Query 011124
Match_columns 493
No_of_seqs 535 out of 3321
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 21:18:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i32_A Heat resistant RNA depe 100.0 7.1E-44 2.4E-48 351.5 28.7 289 61-372 2-291 (300)
2 3eaq_A Heat resistant RNA depe 100.0 3.4E-34 1.2E-38 269.4 26.3 206 62-268 6-212 (212)
3 2db3_A ATP-dependent RNA helic 100.0 5.9E-33 2E-37 288.9 22.2 203 1-207 215-421 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 8.9E-32 3E-36 290.1 22.3 215 1-215 187-419 (579)
5 2j0s_A ATP-dependent RNA helic 100.0 2.1E-31 7.1E-36 274.6 20.9 214 1-217 191-406 (410)
6 3i5x_A ATP-dependent RNA helic 100.0 3.8E-31 1.3E-35 284.2 21.5 214 1-214 238-469 (563)
7 1s2m_A Putative ATP-dependent 100.0 7.4E-30 2.5E-34 262.0 24.3 211 2-216 176-387 (400)
8 2i4i_A ATP-dependent RNA helic 100.0 1.6E-30 5.6E-35 268.2 19.4 206 1-208 187-397 (417)
9 3fht_A ATP-dependent RNA helic 100.0 1.2E-29 4.2E-34 260.9 24.2 215 4-221 184-407 (412)
10 3eiq_A Eukaryotic initiation f 100.0 1.6E-30 5.4E-35 268.0 17.3 212 2-216 196-409 (414)
11 1xti_A Probable ATP-dependent 100.0 3.8E-29 1.3E-33 255.6 24.7 211 4-216 168-380 (391)
12 2hjv_A ATP-dependent RNA helic 100.0 4.4E-29 1.5E-33 224.6 20.5 156 58-214 6-162 (163)
13 1hv8_A Putative ATP-dependent 100.0 4.8E-29 1.6E-33 252.2 22.1 205 2-214 160-365 (367)
14 3pey_A ATP-dependent RNA helic 100.0 2E-28 6.9E-33 250.1 26.6 216 4-222 161-386 (395)
15 2rb4_A ATP-dependent RNA helic 100.0 4.6E-29 1.6E-33 227.1 17.7 161 58-219 4-172 (175)
16 1t5i_A C_terminal domain of A 100.0 1.3E-28 4.5E-33 223.5 17.5 156 59-215 3-160 (172)
17 2p6n_A ATP-dependent RNA helic 100.0 6E-29 2E-33 229.6 15.2 168 38-209 8-177 (191)
18 3fmp_B ATP-dependent RNA helic 100.0 1.5E-30 5.2E-35 274.1 5.1 214 4-220 251-473 (479)
19 1fuk_A Eukaryotic initiation f 100.0 2.4E-28 8.4E-33 220.2 16.2 155 61-216 3-159 (165)
20 1fuu_A Yeast initiation factor 100.0 8.5E-30 2.9E-34 260.6 5.2 211 2-215 175-387 (394)
21 2jgn_A DBX, DDX3, ATP-dependen 100.0 3.8E-28 1.3E-32 223.1 14.0 154 57-210 15-169 (185)
22 2v1x_A ATP-dependent DNA helic 99.9 2E-27 6.8E-32 255.4 19.5 197 2-202 178-382 (591)
23 2z0m_A 337AA long hypothetical 99.9 6.8E-27 2.3E-31 233.7 17.5 194 2-207 142-335 (337)
24 3fho_A ATP-dependent RNA helic 99.9 1.2E-27 3.9E-32 253.9 10.2 214 4-220 275-497 (508)
25 1oyw_A RECQ helicase, ATP-depe 99.9 2.6E-25 8.8E-30 236.3 24.8 193 3-204 153-353 (523)
26 2yjt_D ATP-dependent RNA helic 99.9 2.5E-28 8.7E-33 221.2 0.0 154 61-215 3-158 (170)
27 3oiy_A Reverse gyrase helicase 99.9 3.5E-26 1.2E-30 236.2 14.2 194 1-213 161-384 (414)
28 1tf5_A Preprotein translocase 99.9 8.8E-26 3E-30 244.5 7.3 126 68-195 411-546 (844)
29 2xau_A PRE-mRNA-splicing facto 99.9 4.3E-24 1.5E-28 235.9 14.9 177 10-196 231-445 (773)
30 4ddu_A Reverse gyrase; topoiso 99.9 6.6E-24 2.3E-28 242.0 14.7 205 1-224 218-524 (1104)
31 2whx_A Serine protease/ntpase/ 99.9 3.6E-24 1.2E-28 231.0 8.8 179 2-206 289-493 (618)
32 3l9o_A ATP-dependent RNA helic 99.9 1.3E-22 4.4E-27 231.5 21.9 199 1-203 302-607 (1108)
33 3o8b_A HCV NS3 protease/helica 99.9 1.9E-23 6.6E-28 224.1 12.9 187 1-219 329-543 (666)
34 2p6r_A Afuhel308 helicase; pro 99.9 4.3E-22 1.5E-26 219.2 18.7 186 3-195 152-389 (702)
35 1yks_A Genome polyprotein [con 99.9 5.6E-24 1.9E-28 221.3 3.1 177 4-206 113-314 (440)
36 4a2p_A RIG-I, retinoic acid in 99.9 4.5E-22 1.6E-26 212.5 17.8 123 73-197 372-511 (556)
37 2zj8_A DNA helicase, putative 99.9 9.7E-22 3.3E-26 217.0 20.4 199 3-214 152-405 (720)
38 1gku_B Reverse gyrase, TOP-RG; 99.9 1.9E-23 6.4E-28 238.2 6.8 206 6-224 190-487 (1054)
39 2xgj_A ATP-dependent RNA helic 99.9 1.9E-21 6.5E-26 220.0 22.8 198 1-202 204-508 (1010)
40 2fsf_A Preprotein translocase 99.9 4.5E-23 1.5E-27 222.9 8.8 127 67-195 419-584 (853)
41 2d7d_A Uvrabc system protein B 99.9 1.3E-21 4.4E-26 212.9 20.2 174 19-202 385-564 (661)
42 2ykg_A Probable ATP-dependent 99.9 5.9E-23 2E-27 225.8 9.0 129 72-202 379-524 (696)
43 2va8_A SSO2462, SKI2-type heli 99.9 1.5E-21 5E-26 215.4 19.2 202 3-213 159-426 (715)
44 1nkt_A Preprotein translocase 99.9 3.2E-22 1.1E-26 216.6 13.3 127 68-196 439-619 (922)
45 2wv9_A Flavivirin protease NS2 99.9 6.2E-23 2.1E-27 222.9 6.8 176 5-206 347-548 (673)
46 1c4o_A DNA nucleotide excision 99.9 4.3E-21 1.5E-25 208.8 20.4 176 19-204 379-560 (664)
47 3tbk_A RIG-I helicase domain; 99.9 2.8E-21 9.6E-26 206.1 15.9 128 73-202 371-515 (555)
48 3jux_A Protein translocase sub 99.9 1E-20 3.5E-25 200.8 19.4 167 22-195 411-588 (822)
49 2z83_A Helicase/nucleoside tri 99.9 6.3E-23 2.2E-27 214.6 2.2 102 88-194 190-313 (459)
50 1wp9_A ATP-dependent RNA helic 99.8 6.7E-21 2.3E-25 198.8 16.5 123 72-195 342-476 (494)
51 4a4z_A Antiviral helicase SKI2 99.8 1.7E-20 5.9E-25 212.2 20.3 126 75-202 324-502 (997)
52 2jlq_A Serine protease subunit 99.8 3E-21 1E-25 201.5 13.0 165 3-193 123-310 (451)
53 4a2q_A RIG-I, retinoic acid in 99.8 2.2E-20 7.4E-25 208.4 20.3 123 73-197 613-752 (797)
54 2eyq_A TRCF, transcription-rep 99.8 7.6E-21 2.6E-25 218.1 15.4 180 8-194 739-922 (1151)
55 3dmq_A RNA polymerase-associat 99.8 2.7E-20 9.2E-25 210.7 17.6 177 69-246 485-668 (968)
56 3rc3_A ATP-dependent RNA helic 99.8 2.6E-20 8.9E-25 201.8 15.2 191 1-212 251-462 (677)
57 4gl2_A Interferon-induced heli 99.8 1.7E-20 5.7E-25 206.4 13.2 103 88-193 400-517 (699)
58 4a2w_A RIG-I, retinoic acid in 99.8 1.3E-19 4.5E-24 204.7 20.0 122 74-197 614-752 (936)
59 1gm5_A RECG; helicase, replica 99.8 2.6E-20 8.8E-25 204.8 10.2 179 17-201 513-704 (780)
60 2v6i_A RNA helicase; membrane, 99.8 2.3E-20 7.8E-25 193.6 9.3 162 4-191 107-288 (431)
61 4f92_B U5 small nuclear ribonu 99.8 8.2E-19 2.8E-23 207.1 20.6 188 11-202 1074-1316(1724)
62 2fwr_A DNA repair protein RAD2 99.8 4.4E-20 1.5E-24 193.7 2.9 117 71-192 333-452 (472)
63 2oca_A DAR protein, ATP-depend 99.8 1.6E-18 5.5E-23 183.6 12.5 184 8-192 240-453 (510)
64 1z5z_A Helicase of the SNF2/RA 99.8 1E-18 3.5E-23 169.6 9.8 124 70-193 93-223 (271)
65 4f92_B U5 small nuclear ribonu 99.8 1.9E-18 6.6E-23 203.9 13.7 184 15-202 239-481 (1724)
66 3h1t_A Type I site-specific re 99.7 1.3E-17 4.6E-22 179.8 15.7 101 82-183 433-545 (590)
67 1z63_A Helicase of the SNF2/RA 99.6 1.2E-15 4E-20 161.2 12.0 118 72-189 324-446 (500)
68 1z3i_X Similar to RAD54-like; 99.6 8.3E-15 2.8E-19 159.2 15.9 135 72-206 398-542 (644)
69 3mwy_W Chromo domain-containin 99.5 3.7E-14 1.3E-18 157.9 15.5 137 72-208 555-700 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 2.3E-13 7.8E-18 153.6 17.5 134 88-223 537-738 (1038)
71 2e29_A ATP-dependent RNA helic 99.0 1.3E-09 4.4E-14 86.2 7.9 89 267-362 2-91 (92)
72 1dsq_A Nucleic acid binding pr 98.7 8.1E-09 2.8E-13 61.6 2.0 18 476-493 3-20 (26)
73 2ipc_A Preprotein translocase 98.6 2.2E-06 7.5E-11 93.4 19.6 167 22-195 380-699 (997)
74 1a6b_B Momulv, zinc finger pro 98.5 7.4E-08 2.5E-12 63.2 3.3 17 477-493 12-28 (40)
75 2vl7_A XPD; helicase, unknown 98.4 1.1E-06 3.9E-11 93.1 11.9 75 87-166 383-463 (540)
76 2g0c_A ATP-dependent RNA helic 98.3 6.9E-07 2.4E-11 68.5 4.4 61 287-354 1-61 (76)
77 1u6p_A GAG polyprotein; MLV, A 98.3 2.1E-07 7E-12 66.0 1.3 17 477-493 25-41 (56)
78 1nc8_A Nucleocapsid protein; H 98.2 2.6E-07 8.8E-12 56.6 1.2 17 477-493 8-24 (29)
79 2ysa_A Retinoblastoma-binding 98.1 1.2E-06 4.2E-11 61.8 2.0 16 477-492 9-24 (55)
80 4a15_A XPD helicase, ATP-depen 97.8 0.00016 5.6E-09 77.7 13.8 104 87-193 447-583 (620)
81 2a51_A Nucleocapsid protein; s 97.8 8.1E-06 2.8E-10 53.7 2.2 17 477-493 23-39 (39)
82 2bl6_A Nucleocapsid protein P1 97.8 8E-06 2.7E-10 53.1 1.5 17 477-493 21-37 (37)
83 3i31_A Heat resistant RNA depe 97.7 6.4E-05 2.2E-09 56.6 6.2 77 275-371 2-78 (88)
84 2a51_A Nucleocapsid protein; s 97.7 1.1E-05 3.7E-10 53.1 1.7 17 477-493 2-18 (39)
85 2bl6_A Nucleocapsid protein P1 97.7 1.5E-05 5E-10 51.8 1.8 16 478-493 3-18 (37)
86 1cl4_A Protein (GAG polyprotei 97.7 1.7E-05 5.9E-10 57.6 2.4 18 476-493 31-48 (60)
87 2li8_A Protein LIN-28 homolog 97.6 3.9E-05 1.3E-09 58.0 3.8 18 476-493 47-64 (74)
88 1wrb_A DJVLGB; RNA helicase, D 97.6 4.4E-05 1.5E-09 72.3 4.7 51 1-51 186-240 (253)
89 2ec7_A GAG polyprotein (PR55GA 97.5 2.4E-05 8.3E-10 54.2 1.7 17 477-493 8-24 (49)
90 2ec7_A GAG polyprotein (PR55GA 97.5 3.2E-05 1.1E-09 53.6 1.8 17 477-493 29-45 (49)
91 3nyb_B Protein AIR2; polya RNA 97.5 2.6E-05 8.8E-10 60.3 1.2 18 476-493 47-64 (83)
92 2li8_A Protein LIN-28 homolog 97.5 0.00014 4.7E-09 54.9 5.2 17 476-492 25-41 (74)
93 2ihx_A Nucleocapsid (NC) prote 97.5 3E-05 1E-09 56.4 1.3 17 477-493 6-22 (61)
94 2ihx_A Nucleocapsid (NC) prote 97.4 4.3E-05 1.5E-09 55.6 2.0 18 476-493 31-48 (61)
95 3ts2_A Protein LIN-28 homolog 97.4 0.00012 3.9E-09 63.5 4.9 17 477-493 121-137 (148)
96 1a1t_A Nucleocapsid protein; s 97.4 4.5E-05 1.5E-09 54.3 1.6 17 477-493 35-51 (55)
97 2cqf_A RNA-binding protein LIN 97.4 9.5E-05 3.2E-09 54.1 3.0 19 475-493 29-47 (63)
98 3hgt_A HDA1 complex subunit 3; 97.4 0.0018 6.2E-08 63.1 12.9 120 71-195 107-238 (328)
99 2cqf_A RNA-binding protein LIN 97.3 5.4E-05 1.9E-09 55.4 1.5 17 477-493 9-25 (63)
100 1a1t_A Nucleocapsid protein; s 97.3 5.8E-05 2E-09 53.7 1.2 17 477-493 14-30 (55)
101 3crv_A XPD/RAD3 related DNA he 97.0 0.0057 1.9E-07 64.7 13.3 75 87-166 392-473 (551)
102 3ts2_A Protein LIN-28 homolog 96.9 0.00045 1.5E-08 59.7 2.8 17 477-493 99-115 (148)
103 2lli_A Protein AIR2; RNA surve 96.7 0.00058 2E-08 57.3 2.5 19 475-493 105-123 (124)
104 1gm5_A RECG; helicase, replica 95.7 0.023 7.8E-07 62.4 8.8 90 72-161 400-496 (780)
105 2lli_A Protein AIR2; RNA surve 95.5 0.0052 1.8E-07 51.4 2.3 18 476-493 65-82 (124)
106 3oiy_A Reverse gyrase helicase 95.4 0.031 1E-06 56.5 8.0 80 82-161 58-145 (414)
107 4ddu_A Reverse gyrase; topoiso 94.0 0.074 2.5E-06 60.8 7.2 89 72-161 104-202 (1104)
108 3fe2_A Probable ATP-dependent 93.6 0.75 2.6E-05 42.4 12.4 70 88-161 102-182 (242)
109 2eyq_A TRCF, transcription-rep 93.2 0.22 7.5E-06 57.2 9.5 89 72-160 635-730 (1151)
110 2v1x_A ATP-dependent DNA helic 92.4 0.2 7E-06 53.2 7.2 59 87-145 83-144 (591)
111 1wrb_A DJVLGB; RNA helicase, D 92.3 0.94 3.2E-05 41.9 11.1 69 89-161 101-180 (253)
112 3ber_A Probable ATP-dependent 92.1 0.99 3.4E-05 41.9 10.9 70 88-161 111-192 (249)
113 1oyw_A RECQ helicase, ATP-depe 91.8 0.19 6.3E-06 52.7 6.0 74 87-160 64-144 (523)
114 3iuy_A Probable ATP-dependent 91.1 0.66 2.3E-05 42.2 8.4 71 87-161 93-173 (228)
115 1t6n_A Probable ATP-dependent 90.1 2.5 8.6E-05 37.9 11.4 69 89-160 83-163 (220)
116 2oxc_A Probable ATP-dependent 89.4 0.8 2.7E-05 41.8 7.4 86 70-160 70-171 (230)
117 2gxq_A Heat resistant RNA depe 89.2 2.6 8.9E-05 37.3 10.6 70 88-161 72-150 (207)
118 1qde_A EIF4A, translation init 89.1 2.7 9.1E-05 37.8 10.7 86 70-160 60-160 (224)
119 3bor_A Human initiation factor 88.9 1.4 4.9E-05 40.3 8.8 72 87-161 97-179 (237)
120 2hqh_E Restin; beta/BETA struc 88.5 0.11 3.9E-06 29.8 0.5 16 478-493 6-21 (26)
121 1vec_A ATP-dependent RNA helic 88.3 1.3 4.6E-05 39.2 8.0 69 88-160 71-151 (206)
122 3ly5_A ATP-dependent RNA helic 87.4 2.3 7.8E-05 39.7 9.3 71 87-161 125-207 (262)
123 3nyb_B Protein AIR2; polya RNA 87.2 0.14 4.7E-06 39.3 0.4 15 478-492 27-41 (83)
124 2db3_A ATP-dependent RNA helic 86.9 1.6 5.3E-05 44.2 8.3 69 88-160 129-208 (434)
125 1gku_B Reverse gyrase, TOP-RG; 86.0 0.89 3E-05 51.7 6.4 75 85-161 96-181 (1054)
126 1xti_A Probable ATP-dependent 86.0 2.9 9.8E-05 41.0 9.6 71 88-161 76-158 (391)
127 4a2p_A RIG-I, retinoic acid in 85.0 1.6 5.4E-05 45.3 7.5 70 88-161 55-136 (556)
128 2pl3_A Probable ATP-dependent 85.0 3.4 0.00012 37.5 9.0 69 87-160 96-176 (236)
129 2i4i_A ATP-dependent RNA helic 84.0 2.5 8.5E-05 41.9 8.1 69 89-161 102-181 (417)
130 1wp9_A ATP-dependent RNA helic 83.1 3.5 0.00012 41.3 8.9 69 87-160 51-130 (494)
131 1h2v_Z 20 kDa nuclear CAP bind 82.6 4.9 0.00017 34.0 8.4 60 285-353 38-102 (156)
132 3tbk_A RIG-I helicase domain; 82.4 1.6 5.5E-05 45.1 6.2 70 88-161 52-133 (555)
133 1q0u_A Bstdead; DEAD protein, 82.3 1.5 5.1E-05 39.5 5.2 69 88-160 72-155 (219)
134 4a2q_A RIG-I, retinoic acid in 81.9 2.5 8.5E-05 46.4 7.7 70 88-161 296-377 (797)
135 3dkp_A Probable ATP-dependent 81.8 2.8 9.5E-05 38.4 6.9 89 70-161 75-181 (245)
136 2z0m_A 337AA long hypothetical 80.8 5 0.00017 38.1 8.7 69 87-160 55-134 (337)
137 1fuu_A Yeast initiation factor 79.7 3.5 0.00012 40.3 7.3 70 87-161 88-168 (394)
138 1hv8_A Putative ATP-dependent 78.2 17 0.00057 34.8 11.7 86 71-161 54-153 (367)
139 2j0s_A ATP-dependent RNA helic 78.2 6.8 0.00023 38.6 8.9 70 87-160 104-184 (410)
140 1s2m_A Putative ATP-dependent 78.1 7.9 0.00027 37.9 9.4 70 88-161 89-169 (400)
141 3pgw_S U1-70K; protein-RNA com 77.0 36 0.0012 34.3 14.0 60 285-353 101-165 (437)
142 3fmo_B ATP-dependent RNA helic 76.6 3.3 0.00011 39.5 5.8 85 70-161 140-241 (300)
143 3fmp_B ATP-dependent RNA helic 76.1 5.1 0.00017 40.8 7.5 85 70-161 140-241 (479)
144 3eiq_A Eukaryotic initiation f 74.4 4.3 0.00015 40.0 6.3 72 87-161 107-189 (414)
145 2pzo_E CAP-Gly domain-containi 73.1 0.9 3.1E-05 29.2 0.5 17 477-493 22-38 (42)
146 4a2w_A RIG-I, retinoic acid in 71.9 3.5 0.00012 46.2 5.3 69 88-160 296-376 (936)
147 3q2s_C Cleavage and polyadenyl 71.5 6.6 0.00023 35.9 6.3 62 285-353 67-133 (229)
148 2pk2_A Cyclin-T1, protein TAT; 70.9 1.2 4E-05 44.1 1.0 9 256-264 192-200 (358)
149 1tf5_A Preprotein translocase 69.4 8.2 0.00028 42.2 7.2 68 87-160 123-208 (844)
150 2ykg_A Probable ATP-dependent 69.2 5.5 0.00019 42.7 6.0 69 89-161 62-142 (696)
151 2fsf_A Preprotein translocase 68.7 9 0.00031 41.9 7.4 69 87-161 114-200 (853)
152 3b6e_A Interferon-induced heli 68.0 3.8 0.00013 36.3 3.8 54 88-145 82-140 (216)
153 2zj8_A DNA helicase, putative 67.5 5.4 0.00018 43.1 5.5 67 87-160 67-143 (720)
154 3l9o_A ATP-dependent RNA helic 66.3 6.9 0.00024 44.6 6.2 69 81-160 220-295 (1108)
155 2oca_A DAR protein, ATP-depend 64.5 6.2 0.00021 40.4 5.0 67 88-161 157-231 (510)
156 1nkt_A Preprotein translocase 63.3 13 0.00044 41.0 7.3 57 82-145 147-208 (922)
157 2va8_A SSO2462, SKI2-type heli 62.0 6.1 0.00021 42.6 4.5 84 70-160 55-150 (715)
158 2ipc_A Preprotein translocase 61.4 13 0.00043 41.2 6.7 54 87-146 119-177 (997)
159 3gk5_A Uncharacterized rhodane 60.5 7.7 0.00026 30.6 3.8 42 81-122 48-90 (108)
160 3e2u_E CAP-Gly domain-containi 59.6 2.4 8.3E-05 27.3 0.5 17 477-493 22-38 (42)
161 3i5x_A ATP-dependent RNA helic 59.4 4 0.00014 42.5 2.5 69 89-160 147-231 (563)
162 3sqw_A ATP-dependent RNA helic 58.7 4.2 0.00014 42.7 2.5 69 89-160 96-180 (579)
163 4gl2_A Interferon-induced heli 58.2 3.2 0.00011 44.5 1.5 68 89-160 57-141 (699)
164 3dmn_A Putative DNA helicase; 58.2 67 0.0023 27.4 9.9 114 31-164 8-123 (174)
165 2p6r_A Afuhel308 helicase; pro 57.6 11 0.00036 40.6 5.5 82 73-161 52-144 (702)
166 3g5j_A Putative ATP/GTP bindin 56.5 14 0.00049 29.8 5.0 41 82-122 82-125 (134)
167 2jtq_A Phage shock protein E; 55.0 29 0.00098 25.6 6.2 42 79-121 30-75 (85)
168 1gmx_A GLPE protein; transfera 54.4 15 0.00051 28.7 4.6 44 79-122 49-94 (108)
169 3hix_A ALR3790 protein; rhodan 51.2 15 0.00053 28.6 4.2 40 83-122 47-88 (106)
170 1c4o_A DNA nucleotide excision 51.2 75 0.0026 33.8 10.8 83 67-151 34-144 (664)
171 2dgu_A Heterogeneous nuclear r 50.5 80 0.0027 23.9 10.1 68 286-366 11-82 (103)
172 2xgj_A ATP-dependent RNA helic 50.3 23 0.0008 39.8 6.9 78 72-160 112-197 (1010)
173 3o8b_A HCV NS3 protease/helica 49.1 28 0.00097 37.1 6.9 64 87-161 256-324 (666)
174 2fz4_A DNA repair protein RAD2 48.5 47 0.0016 30.0 7.7 61 70-145 117-179 (237)
175 1tq1_A AT5G66040, senescence-a 46.7 12 0.0004 30.6 2.8 39 84-122 78-118 (129)
176 3flh_A Uncharacterized protein 46.5 12 0.00041 30.3 2.8 43 80-122 63-108 (124)
177 2l82_A Designed protein OR32; 46.4 1.1E+02 0.0036 24.1 12.3 128 91-223 5-143 (162)
178 3hjh_A Transcription-repair-co 45.6 1E+02 0.0035 31.3 10.3 110 64-175 17-145 (483)
179 2fwr_A DNA repair protein RAD2 45.5 26 0.0009 35.2 5.9 59 72-145 119-179 (472)
180 3fht_A ATP-dependent RNA helic 44.8 46 0.0016 32.3 7.4 84 70-160 73-173 (412)
181 4a4z_A Antiviral helicase SKI2 44.0 32 0.0011 38.7 6.7 51 84-145 78-131 (997)
182 3pey_A ATP-dependent RNA helic 42.6 64 0.0022 30.9 8.1 67 87-161 74-151 (395)
183 3iwh_A Rhodanese-like domain p 42.4 12 0.00042 29.3 2.2 38 84-121 52-90 (103)
184 3foj_A Uncharacterized protein 41.1 23 0.00078 27.2 3.6 37 85-121 53-90 (100)
185 3eme_A Rhodanese-like domain p 40.4 20 0.00069 27.6 3.2 37 85-121 53-90 (103)
186 2d7d_A Uvrabc system protein B 40.3 2E+02 0.0069 30.4 12.1 107 67-175 38-176 (661)
187 1rif_A DAR protein, DNA helica 40.2 32 0.0011 31.9 5.2 51 88-145 157-212 (282)
188 1wv9_A Rhodanese homolog TT165 39.7 32 0.0011 26.0 4.2 36 86-122 52-88 (94)
189 2k0z_A Uncharacterized protein 36.4 58 0.002 25.3 5.4 38 85-122 53-91 (110)
190 3fho_A ATP-dependent RNA helic 36.0 51 0.0017 33.6 6.4 66 88-161 189-265 (508)
191 2pju_A Propionate catabolism o 34.9 1.4E+02 0.0047 26.9 8.3 133 6-145 24-162 (225)
192 2fsx_A RV0390, COG0607: rhodan 33.2 51 0.0017 27.3 4.8 37 86-122 78-116 (148)
193 1qys_A TOP7; alpha-beta, novel 33.1 1.3E+02 0.0045 22.0 6.2 51 60-110 15-69 (106)
194 1vee_A Proline-rich protein fa 31.6 58 0.002 26.4 4.8 37 86-122 72-110 (134)
195 2hhg_A Hypothetical protein RP 29.9 43 0.0015 27.2 3.8 37 86-122 84-122 (139)
196 1vp8_A Hypothetical protein AF 28.2 1.5E+02 0.005 26.2 6.8 75 69-148 23-109 (201)
197 3nhv_A BH2092 protein; alpha-b 28.0 43 0.0015 27.7 3.5 37 86-122 70-109 (144)
198 3mwy_W Chromo domain-containin 26.3 1.2E+02 0.0041 33.0 7.5 59 86-145 284-353 (800)
199 2q5c_A NTRC family transcripti 26.3 1.6E+02 0.0056 25.6 7.2 123 89-222 5-132 (196)
200 3ilm_A ALR3790 protein; rhodan 25.7 48 0.0016 27.3 3.3 38 85-122 53-92 (141)
201 3mb5_A SAM-dependent methyltra 25.3 2.5E+02 0.0086 24.9 8.6 41 70-110 169-209 (255)
202 1qxn_A SUD, sulfide dehydrogen 24.6 53 0.0018 26.8 3.4 38 85-122 79-118 (137)
203 3sxu_A DNA polymerase III subu 24.4 1.3E+02 0.0044 25.2 5.8 76 74-164 24-104 (150)
204 3d1p_A Putative thiosulfate su 23.9 57 0.002 26.5 3.5 36 87-122 90-127 (139)
205 2fcj_A Small toprim domain pro 23.6 1.6E+02 0.0054 23.7 5.9 54 90-145 5-58 (119)
206 3rot_A ABC sugar transporter, 22.2 4.3E+02 0.015 23.7 10.6 60 104-163 152-225 (297)
207 1t57_A Conserved protein MTH16 22.1 92 0.0032 27.5 4.4 75 69-147 31-115 (206)
208 2pju_A Propionate catabolism o 20.8 4.5E+02 0.015 23.4 10.0 126 89-223 13-145 (225)
209 1uar_A Rhodanese; sulfurtransf 20.3 95 0.0032 28.6 4.6 44 78-121 221-269 (285)
210 4fn4_A Short chain dehydrogena 20.1 2.3E+02 0.0079 25.8 7.1 58 87-144 30-91 (254)
211 2q5c_A NTRC family transcripti 20.0 2.9E+02 0.0098 24.0 7.5 130 6-145 16-150 (196)
No 1
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=7.1e-44 Score=351.48 Aligned_cols=289 Identities=38% Similarity=0.587 Sum_probs=251.8
Q ss_pred ceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEE
Q 011124 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 61 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (493)
.+.|+++.++...|.++|.++++... ..++||||+|++.++.+++.|.. ++.+..+||+|++.+|+.+++.|++|+++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 46788999999999999999998874 78999999999999999999985 88999999999999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHH
Q 011124 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219 (493)
Q Consensus 140 iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~ 219 (493)
|||||+++++|||+|++++||||++|++.++|+||+|||||.|++|.|++|+++.+...++.+++.++.+++.+.+|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCcccc
Q 011124 220 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 299 (493)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (493)
++.+.....++..+..+....+..|.+.+++++++..++.+++||+.+++... ..+++++..++|+|++++.++ .
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~--~~~~l~~~~~~~~~~~~~~g~---~ 235 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPR---L 235 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC--CCBCTTTCCBSCBCEEEECTT---C
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc--CccccccCCCCcEEEEEecCC---C
Confidence 99999999999999988888899999999999999999999999999988765 667888889999999999997 3
Q ss_pred CCcchhhHHHHhhhhcCcCcCccccEEEeeccccceeEeecCHHHHHHHHhhcCCCCCceeeeccCCCCCCCC
Q 011124 300 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDG 372 (493)
Q Consensus 300 ~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~~~~~~~i~~~~~lP~~~~~~ 372 (493)
.. |++++ .|.+. +. +||+|++.+++ +|||||++.++ ...++.++++++||++.+.+
T Consensus 236 ~~--~~~~~-~i~~~-~~---~ig~i~~~~~~----~~~dvp~~~~~------~~~~~~~~~~~~~p~~~~~~ 291 (300)
T 3i32_A 236 SL--PRLVA-LLKGQ-GL---EVGKVAEAEGG----FYVDLRPEARP------EVAGLRLEPARRVEGLLEIP 291 (300)
T ss_dssp CH--HHHHH-HHHHT-TC---CCCCEEEETTE----EEECBCSSCCC------CCTTCEEEEC----------
T ss_pred CC--cHHHH-HHHhc-CC---eECcEEEeCCE----EEEEeCHHHcC------cCCCcEEEecccCCCCccCC
Confidence 33 99997 55553 33 89999998765 89999999888 34689999999999998864
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=100.00 E-value=3.4e-34 Score=269.40 Aligned_cols=206 Identities=44% Similarity=0.704 Sum_probs=192.7
Q ss_pred eEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEE
Q 011124 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (493)
Q Consensus 62 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (493)
+.+.++.++...|.++|.++++.. ...++||||+|++.++.+++.|.. ++.+..+||+|++.+|+++++.|++++++|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 445777788899999999999876 568999999999999999999985 899999999999999999999999999999
Q ss_pred EEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHH
Q 011124 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (493)
Q Consensus 141 LVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (493)
||||+++++|||+|++++||+|++|+++++|+||+|||||.|++|.|++|+++.+...++.+++.++.+++...+|+.++
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~e 164 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 164 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHH
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc
Q 011124 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (493)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~aal~~~~ 268 (493)
+.+.....++..+..........|.+.+++++++.+++++++||++++
T Consensus 165 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~ll 212 (212)
T 3eaq_A 165 VLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL 212 (212)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Confidence 999999999999999887777899999999999999999999999873
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.9e-33 Score=288.94 Aligned_cols=203 Identities=34% Similarity=0.586 Sum_probs=179.7
Q ss_pred CCCCcHHHHHHHHHHhC--CCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHH
Q 011124 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~--~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (493)
|+++||.+++..|+..+ ++++|+++||||+|+++.++++.++.++..+.+.. .......+.+.+..+....|...|
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l 292 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGI--VGGACSDVKQTIYEVNKYAKRSKL 292 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESS--TTCCCTTEEEEEEECCGGGHHHHH
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecc--ccccccccceEEEEeCcHHHHHHH
Confidence 68999999999999985 67899999999999999999999999988876642 233456788888888888899888
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011124 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
.+++.... .++||||+|++.|+.+++.|.+ ++.+..+||++++.+|++++++|++++.+|||||+++++|||+|+|+
T Consensus 293 ~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 293 IEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 88887653 4599999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChh-hHHHHHHHHHHhC
Q 011124 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVG 207 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~ 207 (493)
+|||||+|.+.++|+||+|||||.|+.|.+++|+++. +...++.|.+.+.
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999954 4455555555543
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.98 E-value=8.9e-32 Score=290.10 Aligned_cols=215 Identities=27% Similarity=0.419 Sum_probs=180.2
Q ss_pred CCCCcHHHHHHHHHHhCC-------CCCcEEEEeccCChHHHHHHHHhcCCCceEEecc--ccccccccceEEEEEEcCc
Q 011124 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-------~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~--~~~~~~~~~i~~~~~~~~~ 71 (493)
|+++||.++++.|+..++ .++|+++||||+|+.+.++++.++.++..+.+.. .........+.+.++....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 578999999999988764 3779999999999999999999999887665432 2223344556665555543
Q ss_pred c--cHHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEE
Q 011124 72 T--SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (493)
Q Consensus 72 ~--~k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (493)
. .+...+..++..+ ....++||||+|++.|+.+++.|.. .+.+..+||+|++.+|.++++.|++++++|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 2333333333322 4567999999999999999999984 68899999999999999999999999999999
Q ss_pred ecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCC
Q 011124 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (493)
Q Consensus 143 aT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (493)
||+++++|||+|+|++||+|++|.+++.|+||+|||||+|+.|.|++|+++.+...++.|++.....+.....
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~ 419 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEK 419 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999888876543
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=2.1e-31 Score=274.63 Aligned_cols=214 Identities=35% Similarity=0.607 Sum_probs=191.5
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCccc-HHHHHH
Q 011124 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (493)
|++++|...+..|+..+++..|+++||||+|+.+.++++.++.+|..+.+. ........+.+++..+.... +...|.
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~l~ 268 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDTLC 268 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC--GGGCSCTTEEEEEEEESSTTHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec--CccccCCCceEEEEEeCcHHhHHHHHH
Confidence 468899999999999999999999999999999999998999988877543 22334456777776665544 888888
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011124 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
.++... ...++||||++++.++.+++.|.. ++.+..+||+|++.+|+++++.|++++.+|||||+++++|||+|++++
T Consensus 269 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 269 DLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 888776 457999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCC
Q 011124 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (493)
Q Consensus 159 VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (493)
||+|++|++...|+||+||+||.|++|.+++|+++.+...++.++++++.++++++...
T Consensus 348 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred EEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccch
Confidence 99999999999999999999999999999999999999999999999999998876543
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=3.8e-31 Score=284.21 Aligned_cols=214 Identities=27% Similarity=0.421 Sum_probs=178.7
Q ss_pred CCCCcHHHHHHHHHHhCC-------CCCcEEEEeccCChHHHHHHHHhcCCCceEEecc--ccccccccceEEEEEEcCc
Q 011124 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-------~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~--~~~~~~~~~i~~~~~~~~~ 71 (493)
|+++||.++++.|+..++ .+.|+|+||||+|+.+.+++..++.++..+.+.. .........+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 578999999999987763 3789999999999999999999998877654432 2223334556665555443
Q ss_pred c-cH-HHHHHHHHH---HHcCCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEE
Q 011124 72 T-SK-RTILSDLIT---VYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (493)
Q Consensus 72 ~-~k-~~~l~~ll~---~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (493)
. .+ ...+..+.. ......++||||+|++.|+.+++.|.. .+.+..+|++|++.+|..+++.|++++++|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2 22 233333333 224567999999999999999999984 68899999999999999999999999999999
Q ss_pred ecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeC
Q 011124 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (493)
Q Consensus 143 aT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (493)
||+++++|||+|+|++||+|++|.++++|+||+|||||.|+.|.+++|+.+.+...++.|++.....++...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999988887654
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=7.4e-30 Score=262.01 Aligned_cols=211 Identities=31% Similarity=0.530 Sum_probs=191.5
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHH
Q 011124 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (493)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (493)
++.+|...++.|+..+++..|+++||||+|..+.+++..++.+|..+.+.. ......+.+++..+....|...+..+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME---ELTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS---SCBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc---ccccCCceeEEEEechhhHHHHHHHH
Confidence 566789999999999999999999999999999999999999887765542 23456677888888888899888888
Q ss_pred HHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEE
Q 011124 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (493)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI 160 (493)
++.. ...++||||++++.++.+++.|.. ++.+..+|++|++.+|..+++.|++++.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 253 FSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred Hhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 8765 567999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCC
Q 011124 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (493)
Q Consensus 161 ~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (493)
+|++|++..+|+||+||+||.|++|.|++|+++.+...++.+++.++.+++.++..
T Consensus 332 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 332 NFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp ESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred EeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999999999999999999999999999999998877644
No 8
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=268.24 Aligned_cols=206 Identities=39% Similarity=0.597 Sum_probs=180.2
Q ss_pred CCCCcHHHHHHHHHHh--CCC--CCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHH
Q 011124 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~--~~~--~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (493)
|++++|..+++.|+.. ++. ..|+++||||+|+.+..+++.++.++..+.+.. .......+.+.++.+....+..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~ 264 (417)
T 2i4i_A 187 MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSENITQKVVWVEESDKRS 264 (417)
T ss_dssp HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSSEEEEEEECCGGGHHH
T ss_pred hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCCccCceEEEEEeccHhHHH
Confidence 3567899999999985 443 689999999999999999999999887776542 2334567788888888889999
Q ss_pred HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCC
Q 011124 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (493)
Q Consensus 77 ~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~ 155 (493)
.+.++++......++||||++++.++.+++.|.+ ++.+..+||+|++++|.++++.|++++.+|||||+++++|||+|+
T Consensus 265 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~ 344 (417)
T 2i4i_A 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 344 (417)
T ss_dssp HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCC
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 9999888766678999999999999999999985 789999999999999999999999999999999999999999999
Q ss_pred ccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCC
Q 011124 156 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 208 (493)
Q Consensus 156 v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~ 208 (493)
+++||+|++|.+..+|+||+||+||.|++|.+++|+++.+...++.+.+.+..
T Consensus 345 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 345 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp EEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888776643
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=1.2e-29 Score=260.94 Aligned_cols=215 Identities=31% Similarity=0.480 Sum_probs=183.9
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011124 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (493)
.+|...+..|+..++.+.|+++||||+++.+..++..++.++..+.+.. .......+.+.++.... ..+...+..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (412)
T 3fht_A 184 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 261 (412)
T ss_dssp TTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG--GGSSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc--ccccccCceEEEEEcCChHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988776543 23345566666666554 46777777777
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe
Q 011124 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~ 161 (493)
... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|||+|++++||+
T Consensus 262 ~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 262 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp HHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred hhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 765 568999999999999999999986 789999999999999999999999999999999999999999999999999
Q ss_pred CCCCC------ChhHHHHHhhccCCCCCcceEEEecChhh-HHHHHHHHHHhCCCceeeCCCCHHHH
Q 011124 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVEDV 221 (493)
Q Consensus 162 ~~~p~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~~~ 221 (493)
|++|+ +..+|+||+||+||.|+.|.+++++++.+ ...++.+++.++.+++..+.+..+++
T Consensus 341 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 341 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp SSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred ECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 99994 67899999999999999999999998765 78899999999999998877665544
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=267.96 Aligned_cols=212 Identities=33% Similarity=0.574 Sum_probs=173.2
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcc-cHHHHHHH
Q 011124 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (493)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ 80 (493)
++.+|...+..|+..++++.|+++||||+|..+..+++.++.++..+.+.. .......+.+.++..... .+...+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK--EELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCC--CCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecC--CccCCCCceEEEEEeChHHhHHHHHHH
Confidence 467899999999999999999999999999999999999999888775542 233445566666665544 48888888
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011124 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
+++.. ...++||||++++.++.+++.|.. .+.+..+|++|++.+|.++++.|++++.+|||||+++++|||+|++++|
T Consensus 274 ~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 274 LYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 77665 457999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCC
Q 011124 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (493)
|+|++|.+..+|+||+||+||.|++|.|++|+++.+...++.+++.++..++.+++.
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 999999999999999999999999999999999999999999999999998887543
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=3.8e-29 Score=255.63 Aligned_cols=211 Identities=24% Similarity=0.461 Sum_probs=188.7
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011124 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (493)
++|...+..++..++...|+++||||+|+.+..+++.++.+|..+.+... .......+.+++.......+...+..+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE-TKLTLHGLQQYYVKLKDNEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCC-CCCCCTTCEEEEEECCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCc-cccCcccceEEEEEcCchhHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999887765432 22334567788888888889998888887
Q ss_pred HHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeC
Q 011124 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 162 (493)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~ 162 (493)
.. ...++||||++++.++.+++.|.. ++.+..+|++|++.+|.++++.|++++.+|||||+++++|+|+|++++||++
T Consensus 247 ~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 247 VL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred hc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 75 568999999999999999999985 7899999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhccCCCCCcceEEEecChh-hHHHHHHHHHHhCCCceeeCCC
Q 011124 163 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPP 216 (493)
Q Consensus 163 ~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~p 216 (493)
++|++...|+||+||+||.|++|.+++++++. +...++.+++.+..+++.++..
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 99999999999999999999999999999876 5577899999998888876543
No 12
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=4.4e-29 Score=224.64 Aligned_cols=156 Identities=34% Similarity=0.609 Sum_probs=147.0
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCC
Q 011124 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 136 (493)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g 136 (493)
...+++++++.++...|...|..++... ...++||||++++.++.+++.|.. ++.+..+||+|++.+|..+++.|+++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567899999999999999999999876 567999999999999999999985 78999999999999999999999999
Q ss_pred CEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeC
Q 011124 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (493)
Q Consensus 137 ~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (493)
+++|||||+++++|+|+|++++||+|++|+++.+|+||+||++|.|++|.+++|+++.+...++.+++.++.++++++
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887654
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=4.8e-29 Score=252.16 Aligned_cols=205 Identities=36% Similarity=0.599 Sum_probs=185.1
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHH
Q 011124 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (493)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (493)
++.+|...+..++..+++..|++++|||+|.++..+++.++.++..+... ....+.+.++.+....+...+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK------INANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC------SSSSSEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec------CCCCceEEEEEeChHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999887666532 223566777778888888888777
Q ss_pred HHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEE
Q 011124 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (493)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI 160 (493)
++ ....++||||++++.++.+++.|.. ++.+..+|+++++.+|+++++.|++++.+|||||+++++|+|+|++++||
T Consensus 234 l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 234 LK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp HC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred Hh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 75 3567999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeC
Q 011124 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (493)
Q Consensus 161 ~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (493)
++++|+++.+|+||+||++|.|++|.+++++++.+...++.+++.++.+++.++
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999999887654
No 14
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=2e-28 Score=250.05 Aligned_cols=216 Identities=31% Similarity=0.538 Sum_probs=185.9
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcC-cccHHHHHHHHH
Q 011124 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILSDLI 82 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll 82 (493)
.+|...+..++..++.+.|+++||||+++.+..+++.++.++..+.+.. .......+.+.+.... ...+...+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEcCchHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999998888776543 2333455666666554 345677777666
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe
Q 011124 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~ 161 (493)
... ...++||||++++.++.+++.|.. .+.+..+|++|++.+|.++++.|++++.+|||||+++++|||+|++++||+
T Consensus 239 ~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 317 (395)
T 3pey_A 239 GLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN 317 (395)
T ss_dssp TTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE
T ss_pred Hhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE
Confidence 554 568999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred CCCCC------ChhHHHHHhhccCCCCCcceEEEecCh-hhHHHHHHHHHHhC-CCceeeCCCCHHHHH
Q 011124 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVG-CKFEFVSPPVVEDVL 222 (493)
Q Consensus 162 ~~~p~------~~~~y~qr~GR~gR~g~~g~~i~l~~~-~e~~~~~~l~~~~~-~~~~~~~~p~~~~~~ 222 (493)
|++|+ ++.+|+||+||+||.|++|.+++++.+ .+...++.+++.++ ..+..++.+..+++.
T Consensus 318 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 318 YDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVE 386 (395)
T ss_dssp SSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHH
T ss_pred cCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHH
Confidence 99999 999999999999999999999999985 55678889999888 777777777665544
No 15
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=227.15 Aligned_cols=161 Identities=28% Similarity=0.502 Sum_probs=145.2
Q ss_pred cccceEEEEEEcCccc-HHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccC
Q 011124 58 LAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (493)
Q Consensus 58 ~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~ 135 (493)
+..++.|+++.++... |...|..+++.. +..++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4567899999888765 999998888765 467999999999999999999986 7899999999999999999999999
Q ss_pred CCEEEEEecccccccCCCCCccEEEeCCCC------CChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCC
Q 011124 136 GKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (493)
Q Consensus 136 g~~~iLVaT~~~~~Gidip~v~~VI~~~~p------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (493)
++++|||||+++++|+|+|++++||+|++| .+..+|+||+||+||.|++|.+++|+++.+...++.+++.++.+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCHH
Q 011124 210 FEFVSPPVVE 219 (493)
Q Consensus 210 ~~~~~~p~~~ 219 (493)
++.++++..+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 9988877554
No 16
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.3e-28 Score=223.53 Aligned_cols=156 Identities=23% Similarity=0.451 Sum_probs=143.6
Q ss_pred ccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCC
Q 011124 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (493)
Q Consensus 59 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~ 137 (493)
...+.|+++.++...|...|.++++.. +..++||||++++.++.+++.|.. ++.+..+||+|++.+|+.+++.|++++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 456889999999999999999999875 567999999999999999999985 889999999999999999999999999
Q ss_pred EEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChh-hHHHHHHHHHHhCCCceeeCC
Q 011124 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 215 (493)
Q Consensus 138 ~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~ 215 (493)
++|||||+++++|+|+|++++||+||+|++++.|+||+||++|.|++|.+++|+++. +...++.+++.+..+++.++.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999999999999876 567899999999988877653
No 17
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=6e-29 Score=229.58 Aligned_cols=168 Identities=27% Similarity=0.393 Sum_probs=132.7
Q ss_pred HHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEE
Q 011124 38 SRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEA 116 (493)
Q Consensus 38 ~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~ 116 (493)
...||++|..|.+.. ...+..++.++++.++...|...|.+++... ..++||||++++.++.+++.|.. ++.+..
T Consensus 8 ~~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 8 SSGVDLGTENLYFQS--MGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccccCCCEEEEECC--CCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 346899999887653 3345678999999999999999988888653 46899999999999999999985 899999
Q ss_pred EeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChh-h
Q 011124 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-Q 195 (493)
Q Consensus 117 lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e 195 (493)
+||+|++.+|+.+++.|++++++|||||+++++|||+|++++||+||+|+++++|+||+||+||.|++|.+++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred HHHHHHHHHHhCCC
Q 011124 196 RRTVRSLERDVGCK 209 (493)
Q Consensus 196 ~~~~~~l~~~~~~~ 209 (493)
...++.|++.+...
T Consensus 164 ~~~~~~l~~~l~~~ 177 (191)
T 2p6n_A 164 ESVLMDLKALLLEA 177 (191)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 67777777765433
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=1.5e-30 Score=274.08 Aligned_cols=214 Identities=31% Similarity=0.475 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011124 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (493)
.+|...+..|+..++.++|+|+||||++..+..++..++.+|..+.+... ......+.+.++.+.. ..+...|..++
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVLCSSRDEKFQALCNLY 328 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc--ccCcCCceEEEEEeCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999888876532 2334455555555543 45666777766
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe
Q 011124 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~ 161 (493)
... ...++||||++++.|+.+++.|.. .+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 329 ~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 329 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 554 457999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred CCCCC------ChhHHHHHhhccCCCCCcceEEEecChhh-HHHHHHHHHHhCCCceeeCCCCHHH
Q 011124 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVED 220 (493)
Q Consensus 162 ~~~p~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (493)
||+|. +...|+||+|||||.|+.|.+++|+++.+ ...++.|++.++.+++.+.....++
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 473 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDE 473 (479)
T ss_dssp ------------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHHH
Confidence 99995 56899999999999999999999998765 7788889888888777665544433
No 19
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=2.4e-28 Score=220.18 Aligned_cols=155 Identities=31% Similarity=0.580 Sum_probs=139.5
Q ss_pred ceEEEEEEcCccc-HHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCE
Q 011124 61 GIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (493)
Q Consensus 61 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~ 138 (493)
++.|+++.++... |.+.|..+++.. +..++||||++++.++.++..|.. .+.+..+|++|++.+|+.+++.|+++++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5678888887777 999999999876 568999999999999999999985 7899999999999999999999999999
Q ss_pred EEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCC
Q 011124 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (493)
Q Consensus 139 ~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (493)
+|||||+++++|+|+|++++||+|++|+++.+|+||+||+||.|++|.+++|+++.+...++.+++.++.+++.++.+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887654
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=8.5e-30 Score=260.57 Aligned_cols=211 Identities=34% Similarity=0.589 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcc-cHHHHHHH
Q 011124 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (493)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ 80 (493)
++.+|...+..++..+++..|+++||||+|+.+.++...++.+|..+.+.. .......+.+++..+... .+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK--DELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC--ccccCCCceEEEEEcCchhhHHHHHHH
Confidence 456789999999999999999999999999999999999999988776542 222334455555544443 36677777
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011124 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
+++.. ...++||||++++.++.+++.|.. .+.+..+||+|++.+|+++++.|++++.+|||||+++++|+|+|++++|
T Consensus 253 ~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~V 331 (394)
T 1fuu_A 253 LYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEE
Confidence 77654 457999999999999999999985 7889999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCC
Q 011124 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (493)
|++++|+++.+|+||+||+||.|++|.+++++++.+...++.+++.++.+++.++.
T Consensus 332 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp --------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 99999999999999999999999999999999999999999999988888776554
No 21
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=223.14 Aligned_cols=154 Identities=40% Similarity=0.553 Sum_probs=128.2
Q ss_pred ccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccC
Q 011124 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (493)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~ 135 (493)
.+..++.++++.++...|...|.++++...+..++||||++++.++.++..|.. ++.+..+||+|++.+|+.+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 346789999999999999999999998865678999999999999999999985 7899999999999999999999999
Q ss_pred CCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCc
Q 011124 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210 (493)
Q Consensus 136 g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~ 210 (493)
++++|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.+++|+++.+...++.+++.+....
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 169 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 169 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999888888887775443
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=2e-27 Score=255.44 Aligned_cols=197 Identities=20% Similarity=0.332 Sum_probs=157.8
Q ss_pred CCCc--HHHHHHH--HHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHH
Q 011124 2 LAVG--FEEDVEL--ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI 77 (493)
Q Consensus 2 L~~G--F~~~l~~--Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 77 (493)
+++| |+.++.. ++....++.|+|+||||+++.+.+.+..++..+..+.+... . ...++.+... .....+...
T Consensus 178 s~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~--~r~nl~~~v~-~~~~~~~~~ 253 (591)
T 2v1x_A 178 SQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-F--NRPNLYYEVR-QKPSNTEDF 253 (591)
T ss_dssp STTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-C--CCTTEEEEEE-ECCSSHHHH
T ss_pred cccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-C--CCcccEEEEE-eCCCcHHHH
Confidence 4556 7777665 44444558999999999999998888888876654433321 1 1233433332 233334444
Q ss_pred HHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCC
Q 011124 78 LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (493)
Q Consensus 78 l~~ll~~~~---~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (493)
+..+++.+. +..++||||+|++.++.+++.|.. ++.+..+|++|++.+|.+++++|++++++|||||+++++|||+
T Consensus 254 ~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~ 333 (591)
T 2v1x_A 254 IEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDK 333 (591)
T ss_dssp HHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCC
T ss_pred HHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCc
Confidence 444444432 467999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHH
Q 011124 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (493)
Q Consensus 154 p~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (493)
|+|++||+|++|.+++.|+||+||+||.|+++.|++|+++.+...++.+
T Consensus 334 p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 334 PDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp SCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred ccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887766655
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=6.8e-27 Score=233.67 Aligned_cols=194 Identities=28% Similarity=0.542 Sum_probs=163.3
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHH
Q 011124 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (493)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (493)
++.+|..++..++..++...|+++||||+|+.+.+....++.++..+... .....+.+.++.+....+..+ ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~ 214 (337)
T 2z0m_A 142 FEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRSKV--QA 214 (337)
T ss_dssp HHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHHHH--HH
T ss_pred hccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHHHH--HH
Confidence 35688999999999999999999999999999999999999888766432 223456666666655444322 23
Q ss_pred HHHHcCCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe
Q 011124 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (493)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~ 161 (493)
+.. ....++||||++++.++.+++.|. .+..+|++|++.+|.+++++|++++.+|||||+++++|+|+|++++||+
T Consensus 215 ~~~-~~~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 215 LRE-NKDKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp HHT-CCCSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred HHh-CCCCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 322 356899999999999999988886 5789999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhC
Q 011124 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (493)
Q Consensus 162 ~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (493)
+++|+++.+|+||+||+||.|++|.+++++. .+...++.+++.++
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 78888888877654
No 24
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.2e-27 Score=253.88 Aligned_cols=214 Identities=30% Similarity=0.506 Sum_probs=153.2
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEc-CcccHHHHHHHHH
Q 011124 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST-TATSKRTILSDLI 82 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll 82 (493)
.+|...+..|+..++.+.|+|++|||+++.+..+...++.++..+.+... ......+.+.+... ....+...+..++
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 275 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE--ELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC--C----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc--cCCcccceEEEEECCchHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999998887765432 22233444444444 3445677777776
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe
Q 011124 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~ 161 (493)
... ...++||||++++.|+.++..|.+ .+.+..+|++|++.+|+.+++.|++++++|||||+++++|||+|++++||+
T Consensus 353 ~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 353 GLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp C----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred Hhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 654 458999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred CCCC------CChhHHHHHhhccCCCCCcceEEEecCh-hhHHHHHHHHHHhCCCceeeCCCCHHH
Q 011124 162 YELP------NDPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVGCKFEFVSPPVVED 220 (493)
Q Consensus 162 ~~~p------~~~~~y~qr~GR~gR~g~~g~~i~l~~~-~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (493)
+++| .+...|+||+||+||.|++|.+++|+.+ .+...++.+++.+...++.++....++
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~ 497 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEE 497 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC---------
T ss_pred ECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHHH
Confidence 9999 7899999999999999999999999984 556778999999998888776554443
No 25
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=2.6e-25 Score=236.28 Aligned_cols=193 Identities=20% Similarity=0.368 Sum_probs=154.6
Q ss_pred CCc--HHHHHHH---HHHhCCCCCcEEEEeccCChHHHHHHHHhcC--CCceEEeccccccccccceEEEEEEcCcccHH
Q 011124 3 AVG--FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKR 75 (493)
Q Consensus 3 ~~G--F~~~l~~---Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~ 75 (493)
+.| |+.++.. ++..+| +.|++++|||+++.+.+.+.+++. ++..+ +... ...++.+.. .....+.
T Consensus 153 ~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~----~r~~l~~~v--~~~~~~~ 224 (523)
T 1oyw_A 153 QWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF----DRPNIRYML--MEKFKPL 224 (523)
T ss_dssp TTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCC----CCTTEEEEE--EECSSHH
T ss_pred cCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCC----CCCceEEEE--EeCCCHH
Confidence 445 6666554 455554 689999999999987665544443 44333 2211 122333222 2334566
Q ss_pred HHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC
Q 011124 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (493)
Q Consensus 76 ~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip 154 (493)
..|..++... +..++||||+|++.++.+++.|.. ++.+..+|++|++++|+.+++.|++++++|||||+++++|||+|
T Consensus 225 ~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p 303 (523)
T 1oyw_A 225 DQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303 (523)
T ss_dssp HHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCT
T ss_pred HHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCcc
Confidence 6677777654 567999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred CccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHH
Q 011124 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (493)
Q Consensus 155 ~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (493)
+|++||||++|.++++|+||+||+||.|.++.|++|+++.+...++.+..
T Consensus 304 ~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998877776654
No 26
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.89 E-value=2.5e-28 Score=221.20 Aligned_cols=154 Identities=29% Similarity=0.497 Sum_probs=139.9
Q ss_pred ceEEEEEEcCc-ccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCE
Q 011124 61 GIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (493)
Q Consensus 61 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~ 138 (493)
++.|+++.++. ..|..+|..+++.. ...++||||++++.++.+++.|.. .+.+..+||+|++.+|..+++.|+++++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45667777776 78999998888764 457999999999999999999986 7889999999999999999999999999
Q ss_pred EEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCC
Q 011124 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (493)
Q Consensus 139 ~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (493)
+|||||+++++|+|+|++++||+|++|+++.+|+||+||+||.|++|.+++++++.+...++.+++.++.++++..+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777765443
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.93 E-value=3.5e-26 Score=236.16 Aligned_cols=194 Identities=22% Similarity=0.386 Sum_probs=154.3
Q ss_pred CCC-CcHHHH-HHHHHHhCC-----------CCCcEEEEecc-CChHHH-HHHHHhcCCCceEEeccccccccccceEEE
Q 011124 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVK-KLSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (493)
Q Consensus 1 mL~-~GF~~~-l~~Il~~~~-----------~~~q~ll~SAT-~p~~v~-~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~ 65 (493)
||+ +||.++ ++.|+..+| .+.|+++|||| +|..+. .+.+.++. +.+. ........+.+.
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~i~~~ 234 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 234 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSS--CCCCCCCSEEEE
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcC--ccccccccchhe
Confidence 456 899999 899999887 88999999999 676554 33444433 1111 222344566676
Q ss_pred EEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceE-EEeCCCCHHHHHHHHhcccCCCEEEEEe
Q 011124 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (493)
Q Consensus 66 ~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~-~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (493)
++.+ .+...|..+++.. +.++||||++++.|+.++..|.. ++.+. .+||+ +|+ ++.|++|+++||||
T Consensus 235 ~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 6655 4555667777664 48999999999999999999986 78888 89985 444 99999999999999
Q ss_pred ----cccccccCCCCC-ccEEEeCCCC--CChhHHHHHhhccCCCC----CcceEEEecChhhHHHHHHHHHHhC--CCc
Q 011124 144 ----TDVAARGLDIPN-VDLIIHYELP--NDPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG--CKF 210 (493)
Q Consensus 144 ----T~~~~~Gidip~-v~~VI~~~~p--~~~~~y~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l~~~~~--~~~ 210 (493)
|+++++|||+|+ |++||+|++| .+..+|+||+|||||.| ++|.+++|+ .+...++.+++.++ .++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~ 381 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEE 381 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCC
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccc
Confidence 999999999999 9999999999 99999999999999987 589999999 56677788888777 444
Q ss_pred eee
Q 011124 211 EFV 213 (493)
Q Consensus 211 ~~~ 213 (493)
+..
T Consensus 382 ~~~ 384 (414)
T 3oiy_A 382 EII 384 (414)
T ss_dssp CEE
T ss_pred ccc
Confidence 443
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.92 E-value=8.8e-26 Score=244.49 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=112.0
Q ss_pred EcCcccHHHHHHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 68 ~~~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.+....|..+|..++.. +....++||||+|++.++.|+..|.. ++++.+||+++.+.+|..+.++|+.+ .||||||
T Consensus 411 ~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATd 488 (844)
T 1tf5_A 411 YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATN 488 (844)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCC
Confidence 34456778777776654 34567999999999999999999985 89999999999999998888888877 5999999
Q ss_pred cccccCCCC--------CccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhh
Q 011124 146 VAARGLDIP--------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 146 ~~~~Gidip--------~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
+|+||+||+ ++.|||||++|.+.+.|+||+|||||+|++|.+++|++..|
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999 78899999999999999999999999999999999998765
No 29
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.91 E-value=4.3e-24 Score=235.93 Aligned_cols=177 Identities=16% Similarity=0.345 Sum_probs=141.1
Q ss_pred HHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHH--c
Q 011124 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--A 86 (493)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~--~ 86 (493)
++.|+... ++.|+|+||||++.+ . +.+|+.++..+.+.... ..+++++...+..++.. ++..+++.+ .
T Consensus 231 l~~l~~~~-~~~~iIl~SAT~~~~--~-l~~~~~~~~vi~v~gr~-----~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~ 301 (773)
T 2xau_A 231 LKQVVKRR-PDLKIIIMSATLDAE--K-FQRYFNDAPLLAVPGRT-----YPVELYYTPEFQRDYLDSAIRTVLQIHATE 301 (773)
T ss_dssp HHHHHHHC-TTCEEEEEESCSCCH--H-HHHHTTSCCEEECCCCC-----CCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC-CCceEEEEeccccHH--H-HHHHhcCCCcccccCcc-----cceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence 44455544 479999999999753 3 34577766666554321 24566666655555443 333344333 2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc------------cCceEEEeCCCCHHHHHHHHhccc-----CCCEEEEEecccccc
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS------------IIASEALHGDISQHQRERTLNGFR-----QGKFTVLVATDVAAR 149 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~------------~~~~~~lhg~~~~~~r~~~~~~F~-----~g~~~iLVaT~~~~~ 149 (493)
..+++||||+++++++.+++.|.+ .+.+..+||+|++++|.++++.|+ +|..+|||||+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 468999999999999999999873 467899999999999999999999 999999999999999
Q ss_pred cCCCCCccEEEeCCC------------------CCChhHHHHHhhccCCCCCcceEEEecChhhH
Q 011124 150 GLDIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 150 Gidip~v~~VI~~~~------------------p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
|||||+|++||++++ |.+.++|+||+|||||. ++|.||+|+++.+.
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999888 89999999999999999 89999999988665
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.90 E-value=6.6e-24 Score=242.04 Aligned_cols=205 Identities=20% Similarity=0.348 Sum_probs=156.1
Q ss_pred CCC-CcHHHH-HHHHHHhCC-----------CCCcEEEEecc-CChHHHH-HHHHhcCCCceEEeccccccccccceEEE
Q 011124 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVKK-LSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (493)
Q Consensus 1 mL~-~GF~~~-l~~Il~~~~-----------~~~q~ll~SAT-~p~~v~~-l~~~~l~~~~~i~~~~~~~~~~~~~i~~~ 65 (493)
||+ +||.++ ++.|++.+| .+.|+++|||| .|..+.. +.+.++. +.+. .......++.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~i~~~ 291 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 291 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCCEEEE
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCCceeE
Confidence 466 999999 999999888 88999999999 6766553 3333333 2222 223345667777
Q ss_pred EEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceE-EEeCCCCHHHHHHHHhcccCCCEEEEEe
Q 011124 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (493)
Q Consensus 66 ~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~-~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (493)
++.+ .+...|..++... +.++||||++++.|+.++..|.. ++.+. .+||+ |++ +++|++|+++||||
T Consensus 292 ~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 292 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEE
T ss_pred EEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEE
Confidence 7665 4556667777664 48999999999999999999985 78898 99993 555 99999999999999
Q ss_pred ----cccccccCCCCC-ccEEEeCCCCC----------------------------------------------------
Q 011124 144 ----TDVAARGLDIPN-VDLIIHYELPN---------------------------------------------------- 166 (493)
Q Consensus 144 ----T~~~~~Gidip~-v~~VI~~~~p~---------------------------------------------------- 166 (493)
|+++++|||+|+ |++|||||+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------ChhHHHHHhhccCCCC----CcceEEEecChhhHHHHHHHHHHhC----CCceeeCCCCH
Q 011124 167 --------------------DPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG----CKFEFVSPPVV 218 (493)
Q Consensus 167 --------------------~~~~y~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l~~~~~----~~~~~~~~p~~ 218 (493)
|..+|+||+|||||.+ ..|.+++++ .+...++.|++.+. .++..+.....
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 518 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANW 518 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCH
Confidence 8889999999999954 357778877 45566666766654 33333443344
Q ss_pred HHHHHH
Q 011124 219 EDVLES 224 (493)
Q Consensus 219 ~~~~~~ 224 (493)
+++++.
T Consensus 519 ~~~~~~ 524 (1104)
T 4ddu_A 519 KELVHE 524 (1104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.90 E-value=3.6e-24 Score=230.96 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=141.6
Q ss_pred CCCcHHHHHHHHHHhCC-CCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011124 2 LAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 2 L~~GF~~~l~~Il~~~~-~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
++++|..++..|++.++ ++.|+|+||||+|..+..+++ .++..+.+.... +......++..
T Consensus 289 ~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~---------------~~~~~~~ll~~ 350 (618)
T 2whx_A 289 TDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI---------------PERSWNTGFDW 350 (618)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSSCCSSSCHH
T ss_pred CCccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC---------------CHHHHHHHHHH
Confidence 47889999999998886 689999999999887544322 244444432110 00111111222
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011124 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
+. . ...++||||+|++.|+.+++.|.+ .+.+..+|++ +|++++++|++++++||||||++++|||+| |++|
T Consensus 351 l~-~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 351 IT-D--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp HH-H--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HH-h--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 22 2 367999999999999999999985 7899999985 788899999999999999999999999997 9988
Q ss_pred --------------------EeCCCCCChhHHHHHhhccCCCC-CcceEEEecC---hhhHHHHHHHHHHh
Q 011124 160 --------------------IHYELPNDPETFVHRSGRTGRAG-KEGTAILMFT---SSQRRTVRSLERDV 206 (493)
Q Consensus 160 --------------------I~~~~p~~~~~y~qr~GR~gR~g-~~g~~i~l~~---~~e~~~~~~l~~~~ 206 (493)
|||++|.+.++|+||+|||||.| ++|.+++|++ +.+...++.+++.+
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 77778999999999999999996 5999999997 77777888888765
No 32
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-22 Score=231.54 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=146.6
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChH--HHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcc------
Q 011124 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------ 72 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~--v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~------ 72 (493)
|++++|...++.|+..++++.|+|+||||+|+. +.+++..+...|..+...... +..++++.+.....
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEeecCCcceeeee
Confidence 577899999999999999999999999999874 446666666666655433211 12223332211100
Q ss_pred -------------------------------------------cH---HHHHHHHHHHH--cCCCeEEEEeCChHHHHHH
Q 011124 73 -------------------------------------------SK---RTILSDLITVY--AKGGKTIVFTQTKRDADEV 104 (493)
Q Consensus 73 -------------------------------------------~k---~~~l~~ll~~~--~~~~~~IVF~~t~~~~~~l 104 (493)
.+ ...+..++..+ ....++||||++++.|+.+
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH
Confidence 00 22333344333 2346999999999999999
Q ss_pred HHHHHc-cC---------------------------------------ceEEEeCCCCHHHHHHHHhcccCCCEEEEEec
Q 011124 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (493)
Q Consensus 105 ~~~L~~-~~---------------------------------------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (493)
+..|.. .+ .+.++||+|++.+|+.+++.|++|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 998853 11 17899999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEeCCCCC--------ChhHHHHHhhccCCCC--CcceEEEecChh-hHHHHHHHH
Q 011124 145 DVAARGLDIPNVDLIIHYELPN--------DPETFVHRSGRTGRAG--KEGTAILMFTSS-QRRTVRSLE 203 (493)
Q Consensus 145 ~~~~~Gidip~v~~VI~~~~p~--------~~~~y~qr~GR~gR~g--~~g~~i~l~~~~-e~~~~~~l~ 203 (493)
+++++|||+|++++||+++.|+ ++.+|+||+|||||.| ..|.|++++.+. +...++.+.
T Consensus 538 ~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred cHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 9999999999999999887643 6677999999999999 789999998775 334444443
No 33
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.89 E-value=1.9e-23 Score=224.08 Aligned_cols=187 Identities=22% Similarity=0.295 Sum_probs=141.3
Q ss_pred CCCCcHHHHHHHHHHhCCCCCc--EEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHH
Q 011124 1 MLAVGFEEDVELILENLPPKRQ--SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q--~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (493)
|++++|..++..|++.++...| +++||||+|..+. ...+....+... . ...+..+ .....
T Consensus 329 ~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~-~---~~~i~~~----~~~~~---- 390 (666)
T 3o8b_A 329 STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALS-N---TGEIPFY----GKAIP---- 390 (666)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB-S---CSSEEET----TEEEC----
T ss_pred hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeec-c---cchhHHH----Hhhhh----
Confidence 6899999999999999998877 6777999988421 122332222110 0 1111111 00000
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011124 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
++ .....++||||+|++.++.+++.|++ ++.+..+||+|++++ |+++..+||||||++++|||+| |+
T Consensus 391 ---l~-~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 ---IE-AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp ---GG-GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred ---hh-hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 11 12568999999999999999999986 799999999999874 4556669999999999999997 99
Q ss_pred EEE----------eCC-----------CCCChhHHHHHhhccCCCCCcceEEEecChhhHHH--H--HHHHHHhCCCcee
Q 011124 158 LII----------HYE-----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--V--RSLERDVGCKFEF 212 (493)
Q Consensus 158 ~VI----------~~~-----------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~--~--~~l~~~~~~~~~~ 212 (493)
+|| ||| +|.+.++|+||+||||| +++|. ++|+++.+... + +.+++..+..+++
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 988 677 89999999999999999 99999 99998877654 4 7788888777777
Q ss_pred eCCCCHH
Q 011124 213 VSPPVVE 219 (493)
Q Consensus 213 ~~~p~~~ 219 (493)
..+|..+
T Consensus 537 ~~l~~~~ 543 (666)
T 3o8b_A 537 YELTPAE 543 (666)
T ss_dssp SCCCHHH
T ss_pred ccCCchH
Confidence 7776544
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.88 E-value=4.3e-22 Score=219.21 Aligned_cols=186 Identities=23% Similarity=0.375 Sum_probs=136.7
Q ss_pred CCcHHHHHHHHHHhC---CCCCcEEEEeccCChHHHHHHHHhcCCCceEEecccccccccc----ceEEEEEEcC-----
Q 011124 3 AVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE----GIKLYAISTT----- 70 (493)
Q Consensus 3 ~~GF~~~l~~Il~~~---~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~----~i~~~~~~~~----- 70 (493)
+.++...++.|+..+ .++.|+|+||||+|+ ..+++ .|+..+ .+........ ... .....+....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~~~-~~~~~~r~~~-l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDAD-YYVSDWRPVP-LVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTCE-EEECCCCSSC-EEEEEECSSEEEEEETTEEEEE
T ss_pred CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH-HHhCCC-cccCCCCCcc-ceEEEeeCCeeeccCcchhhhh
Confidence 446777777776655 578999999999986 44554 455532 2222111100 000 0000111100
Q ss_pred cccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHcc-------------------------------CceEEEeC
Q 011124 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IASEALHG 119 (493)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------------------------------~~~~~lhg 119 (493)
...+...+.++ +.+++++||||++++.++.++..|... ..+..+|+
T Consensus 228 ~~~~~~~~~~~---~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 228 RVKFEELVEEC---VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp ECCHHHHHHHH---HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhHHHHHHHH---HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 00144444433 346789999999999999999888642 35888999
Q ss_pred CCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe----CC---CCCChhHHHHHhhccCCCC--CcceEEEe
Q 011124 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE---LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (493)
Q Consensus 120 ~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~----~~---~p~~~~~y~qr~GR~gR~g--~~g~~i~l 190 (493)
+|++++|+.+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|+++
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999999 66 7899999999999999988 58999999
Q ss_pred cChhh
Q 011124 191 FTSSQ 195 (493)
Q Consensus 191 ~~~~e 195 (493)
+++.+
T Consensus 385 ~~~~~ 389 (702)
T 2p6r_A 385 VGKRD 389 (702)
T ss_dssp CCGGG
T ss_pred ecCcc
Confidence 99877
No 35
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.88 E-value=5.6e-24 Score=221.33 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=123.9
Q ss_pred CcHHHHHHHHHHhC-CCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHH
Q 011124 4 VGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (493)
Q Consensus 4 ~GF~~~l~~Il~~~-~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (493)
.+|...+..+...+ +.+.|+|+||||+|+.+.+++. .+..+... ...++...+..++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~l~ 174 (440)
T 1yks_A 113 PASIAARGWAAHRARANESATILMTATPPGTSDEFPH----SNGEIEDV--------------QTDIPSEPWNTGHDWIL 174 (440)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC----CSSCEEEE--------------ECCCCSSCCSSSCHHHH
T ss_pred cchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh----cCCCeeEe--------------eeccChHHHHHHHHHHH
Confidence 34444444444443 3679999999999876543321 11111110 01111111112222222
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe
Q 011124 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~ 161 (493)
+ ...++||||++++.|+.+++.|.. .+.+..+|| ++|+++++.|++|+++|||||+++++|||+| +++||+
T Consensus 175 ~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 A---DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp H---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEE
T ss_pred h---cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEe
Confidence 2 367999999999999999999986 789999999 4688999999999999999999999999999 999996
Q ss_pred -------------------CCCCCChhHHHHHhhccCCC-CCcceEEEec---ChhhHHHHHHHHHHh
Q 011124 162 -------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (493)
Q Consensus 162 -------------------~~~p~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~e~~~~~~l~~~~ 206 (493)
++.|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 88899999999999999998 6899999996 677777777777765
No 36
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.88 E-value=4.5e-22 Score=212.50 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHcc-------------CceEEEeCCCCHHHHHHHHhcccC-
Q 011124 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 135 (493)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~r~~~~~~F~~- 135 (493)
.|...|..+|... .+..++||||++++.++.|++.|... .....+|++|++.+|.+++++|++
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 3555566666443 45689999999999999999999742 234456788999999999999999
Q ss_pred CCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHH
Q 011124 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (493)
Q Consensus 136 g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 197 (493)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp --CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999999999999999 999 899999999886653
No 37
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.88 E-value=9.7e-22 Score=216.95 Aligned_cols=199 Identities=22% Similarity=0.261 Sum_probs=145.8
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEE------EcC-----c
Q 011124 3 AVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI------STT-----A 71 (493)
Q Consensus 3 ~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~------~~~-----~ 71 (493)
+..+...++.|+..++.+.|+|+||||+|+ ..++. .|+..+ .+...... ..+...+. ... .
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~-~~l~~~-~~~~~~rp-----~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELA-EWLNAE-LIVSDWRP-----VKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHH-HHTTEE-EEECCCCS-----SEEEEEEEETTEEEETTSCEEEC
T ss_pred CCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHH-HHhCCc-ccCCCCCC-----CcceEEEEeCCeeeccccchhhh
Confidence 457788899999988778999999999986 34444 455422 12111000 01111110 111 1
Q ss_pred ccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHcc----------------------------------CceEEE
Q 011124 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------IASEAL 117 (493)
Q Consensus 72 ~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----------------------------------~~~~~l 117 (493)
..+...+.++ +.++.++||||++++.++.++..|.+. ..+..+
T Consensus 224 ~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 224 SSWEELVYDA---IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp SSTTHHHHHH---HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred hHHHHHHHHH---HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 2333343333 346789999999999999999988642 138899
Q ss_pred eCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe----CC----CCCChhHHHHHhhccCCCC--CcceE
Q 011124 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE----LPNDPETFVHRSGRTGRAG--KEGTA 187 (493)
Q Consensus 118 hg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~----~~----~p~~~~~y~qr~GR~gR~g--~~g~~ 187 (493)
|++|++++|+.+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 380 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEG 380 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999 77 6899999999999999988 57999
Q ss_pred EEecChhhHHHHHHHHHHhCCCceeeC
Q 011124 188 ILMFTSSQRRTVRSLERDVGCKFEFVS 214 (493)
Q Consensus 188 i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (493)
++++++.+.. ..+++.+...++.+.
T Consensus 381 ~~l~~~~~~~--~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 381 IIVSTSDDPR--EVMNHYIFGKPEKLF 405 (720)
T ss_dssp EEECSSSCHH--HHHHHHTTSCCCCCC
T ss_pred EEEecCccHH--HHHHHHhcCCCCCcE
Confidence 9999887622 234455554554443
No 38
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.88 E-value=1.9e-23 Score=238.21 Aligned_cols=206 Identities=18% Similarity=0.279 Sum_probs=153.5
Q ss_pred HHHHHHHHHHhC-----------CCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccH
Q 011124 6 FEEDVELILENL-----------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (493)
Q Consensus 6 F~~~l~~Il~~~-----------~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (493)
|..+++.|+..+ +...|+++||||++.. ..++..++.++..+.+. ........+.+.++ ...+
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEE---SCCC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEe---chhH
Confidence 456777777776 4578999999999887 65555555555444432 12233455666665 2455
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEe----ccccccc
Q 011124 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARG 150 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa----T~~~~~G 150 (493)
...|..+++.. +.++||||+|++.|+.+++.|...+.+..+||++ ..++++|++|+++|||| |+++++|
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 66666666543 5789999999999999999998668999999998 47889999999999999 9999999
Q ss_pred CCCCCc-cEEEeCCCC----------------------------------------------------------------
Q 011124 151 LDIPNV-DLIIHYELP---------------------------------------------------------------- 165 (493)
Q Consensus 151 idip~v-~~VI~~~~p---------------------------------------------------------------- 165 (493)
||+|+| ++||||++|
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999996 999999999
Q ss_pred -------CChhHHHHHhhccCCCCCcc--eEEEecChhhHHHHHHHHHHhC---CCceeeCCCCHHHHHHH
Q 011124 166 -------NDPETFVHRSGRTGRAGKEG--TAILMFTSSQRRTVRSLERDVG---CKFEFVSPPVVEDVLES 224 (493)
Q Consensus 166 -------~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~e~~~~~~l~~~~~---~~~~~~~~p~~~~~~~~ 224 (493)
.+..+|+||+|||||.|..| .+++++...+...++.|++.++ ..+..+..+..+++++.
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 487 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRE 487 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHH
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHh
Confidence 78999999999999977665 3666666667778888887776 35555666666666654
No 39
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.9e-21 Score=220.04 Aligned_cols=198 Identities=22% Similarity=0.316 Sum_probs=146.0
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHH--HHHHHhcCCCceEEeccccccccccceEEEEEEcC--------
Q 011124 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVK--KLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~--~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------- 70 (493)
|+++++...++.++..+|++.|+|+||||+|+... +.+......+..+...... +..++++++...
T Consensus 204 l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~~ 279 (1010)
T 2xgj_A 204 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 279 (1010)
T ss_dssp GGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred hcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEEecCCcceeeee
Confidence 45677788889999999999999999999987532 3333333445544332211 122333333211
Q ss_pred -ccc-----------------------------------H--------HHHHHHHHHHHc--CCCeEEEEeCChHHHHHH
Q 011124 71 -ATS-----------------------------------K--------RTILSDLITVYA--KGGKTIVFTQTKRDADEV 104 (493)
Q Consensus 71 -~~~-----------------------------------k--------~~~l~~ll~~~~--~~~~~IVF~~t~~~~~~l 104 (493)
... | ...+..++..+. ...++||||+|++.|+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~l 359 (1010)
T 2xgj_A 280 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 359 (1010)
T ss_dssp CTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHH
Confidence 000 1 122233333321 345899999999999999
Q ss_pred HHHHHc-cC---------------------------------------ceEEEeCCCCHHHHHHHHhcccCCCEEEEEec
Q 011124 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (493)
Q Consensus 105 ~~~L~~-~~---------------------------------------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (493)
+..|.. .+ .+..+||+|++.+|+.+++.|++|.++|||||
T Consensus 360 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT 439 (1010)
T 2xgj_A 360 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 439 (1010)
T ss_dssp HHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 988864 22 27889999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEe----CCC----CCChhHHHHHhhccCCCCC--cceEEEecChh-hHHHHHHH
Q 011124 145 DVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAGK--EGTAILMFTSS-QRRTVRSL 202 (493)
Q Consensus 145 ~~~~~Gidip~v~~VI~----~~~----p~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~-e~~~~~~l 202 (493)
+++++|||+|++++||+ ||. |.++.+|+||+|||||.|. .|.|++++++. +...++.+
T Consensus 440 ~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 440 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp GGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred hHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999999999999999 999 8999999999999999995 59999999865 55555554
No 40
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.87 E-value=4.5e-23 Score=222.88 Aligned_cols=127 Identities=24% Similarity=0.235 Sum_probs=113.6
Q ss_pred EEcCcccHHHHHHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEec
Q 011124 67 ISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (493)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (493)
+.+....|..+|..++.. +....++||||+|++.++.|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+|||
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 345556788888777754 34567999999999999999999985 89999999999999999999999998 599999
Q ss_pred ccccccCCCCCc-------------------------------------cEEEeCCCCCChhHHHHHhhccCCCCCcceE
Q 011124 145 DVAARGLDIPNV-------------------------------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTA 187 (493)
Q Consensus 145 ~~~~~Gidip~v-------------------------------------~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~ 187 (493)
|+|+||+||+.. .|||+|+.|.+...|+||+|||||+|.+|.+
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999873 5999999999999999999999999999999
Q ss_pred EEecChhh
Q 011124 188 ILMFTSSQ 195 (493)
Q Consensus 188 i~l~~~~e 195 (493)
++|++..|
T Consensus 577 ~~fls~eD 584 (853)
T 2fsf_A 577 RFYLSMED 584 (853)
T ss_dssp EEEEETTS
T ss_pred EEEecccH
Confidence 99998766
No 41
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=1.3e-21 Score=212.87 Aligned_cols=174 Identities=20% Similarity=0.321 Sum_probs=132.7
Q ss_pred CCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCCh
Q 011124 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (493)
Q Consensus 19 ~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~ 98 (493)
...|+++||||+++...... .. .+............ ...+......+..++..+......+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~--~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DE--MVEQIIRPTGLLDP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SS--CEEECCCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHhh----hC--eeeeeecccCCCCC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 46899999999987643221 11 12221111111111 12222223334444455555555678999999999
Q ss_pred HHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCC-----CCChhHHH
Q 011124 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (493)
Q Consensus 99 ~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~-----p~~~~~y~ 172 (493)
..++.|++.|.. ++.+..+|+++++.+|.+++++|++|+++|||||+++++|+|+|+|++||+++. |.+.++|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 999999999986 789999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhccCCCCCcceEEEecChhhHHHHHHH
Q 011124 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (493)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (493)
||+|||||. .+|.+++|+++.+....+.+
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 999999998 78999999988665544443
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.87 E-value=5.9e-23 Score=225.85 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=81.3
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHc-c----CceEEE--------eCCCCHHHHHHHHhcccC
Q 011124 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-I----IASEAL--------HGDISQHQRERTLNGFRQ 135 (493)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~----~~~~~l--------hg~~~~~~r~~~~~~F~~ 135 (493)
..|...|..++... .+..++||||++++.++.|++.|.. . +.+..+ |++|++++|++++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 45777777777665 2467999999999999999999986 3 788888 569999999999999998
Q ss_pred -CCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHH
Q 011124 136 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (493)
Q Consensus 136 -g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (493)
|+++|||||+++++|||+|+|++||+||+|+++++|+||+|| ||. +.|.+++|++..+......+
T Consensus 459 ~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp --CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 78999999998776554444
No 43
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.87 E-value=1.5e-21 Score=215.45 Aligned_cols=202 Identities=23% Similarity=0.342 Sum_probs=139.8
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccce--------EEEEEEcC----
Q 011124 3 AVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--------KLYAISTT---- 70 (493)
Q Consensus 3 ~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i--------~~~~~~~~---- 70 (493)
+..|...++.|+..++ +.|+|+||||+++ ..++++ |+..+ .+........ ....+ ........
T Consensus 159 ~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (715)
T 2va8_A 159 DPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAE-PVATNWRPVP-LIEGVIYPERKKKEYNVIFKDNTTK 233 (715)
T ss_dssp CTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCE-EEECCCCSSC-EEEEEEEECSSTTEEEEEETTSCEE
T ss_pred CcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCC-ccCCCCCCCC-ceEEEEecCCcccceeeecCcchhh
Confidence 4567788888888887 8999999999986 344444 55422 1211111000 00000 00011111
Q ss_pred ----cccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHcc-----------------------------------
Q 011124 71 ----ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------- 111 (493)
Q Consensus 71 ----~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----------------------------------- 111 (493)
...+ +..+.+.+.+++++||||+++++++.++..|.+.
T Consensus 234 ~~~~~~~~---~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 234 KVHGDDAI---IAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEESSSHH---HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hcccchHH---HHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 1223 3333444456789999999999999999998742
Q ss_pred --CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe----CC-------CCCChhHHHHHhhcc
Q 011124 112 --IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-------LPNDPETFVHRSGRT 178 (493)
Q Consensus 112 --~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~----~~-------~p~~~~~y~qr~GR~ 178 (493)
..+.++|++|++++|..+++.|++|.++|||||+++++|||+|++++||+ |+ .|.+..+|+||+|||
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24889999999999999999999999999999999999999999999999 99 899999999999999
Q ss_pred CCCC--CcceEEEecChhhHHHHHHHHHHhCCCceee
Q 011124 179 GRAG--KEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (493)
Q Consensus 179 gR~g--~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (493)
||.| ..|.|++++++.+. ....+++.+...++.+
T Consensus 391 GR~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~ 426 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPI 426 (715)
T ss_dssp CCTTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCC
T ss_pred CCCCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCc
Confidence 9988 58999999987653 1223344444444443
No 44
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.87 E-value=3.2e-22 Score=216.57 Aligned_cols=127 Identities=24% Similarity=0.280 Sum_probs=111.9
Q ss_pred EcCcccHHHHHHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 68 ~~~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.+....|..+|...+.. +..+.++||||+|++.++.|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+||||
T Consensus 439 ~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn 516 (922)
T 1nkt_A 439 YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 516 (922)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 34455677777766644 44567999999999999999999985 89999999999888888899999988 5999999
Q ss_pred cccccCCCCCc----------------------------------------------------cEEEeCCCCCChhHHHH
Q 011124 146 VAARGLDIPNV----------------------------------------------------DLIIHYELPNDPETFVH 173 (493)
Q Consensus 146 ~~~~Gidip~v----------------------------------------------------~~VI~~~~p~~~~~y~q 173 (493)
+++||+||+.+ .|||+|+.|.+...|+|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999975 59999999999999999
Q ss_pred HhhccCCCCCcceEEEecChhhH
Q 011124 174 RSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 174 r~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
|+|||||+|.+|.+++|++..|.
T Consensus 597 r~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhcccccCCCCeeEEEEechhHH
Confidence 99999999999999999987664
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.87 E-value=6.2e-23 Score=222.85 Aligned_cols=176 Identities=14% Similarity=0.181 Sum_probs=131.0
Q ss_pred cHHHHHHHHHHhCC-CCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011124 5 GFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (493)
Q Consensus 5 GF~~~l~~Il~~~~-~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (493)
.+..++..+...++ .+.|+|+||||+|..+..+.. .+...+.+.. ..+...+..++..+.
T Consensus 347 ~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~---~~~~i~~v~~---------------~~~~~~~~~~l~~l~- 407 (673)
T 2wv9_A 347 ASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD---TNSPVHDVSS---------------EIPDRAWSSGFEWIT- 407 (673)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC---------------CCCSSCCSSCCHHHH-
T ss_pred cHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc---cCCceEEEee---------------ecCHHHHHHHHHHHH-
Confidence 34445555555543 689999999999876443221 1111111110 011111111222222
Q ss_pred HHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe-
Q 011124 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH- 161 (493)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~- 161 (493)
....++||||++++.++.+++.|.. .+.+..+||. +|+++++.|++++++|||||+++++|||+| +++|||
T Consensus 408 --~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 408 --DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp --SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEEC
T ss_pred --hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEEC
Confidence 2468999999999999999999986 7899999994 799999999999999999999999999999 999998
Q ss_pred -------------------CCCCCChhHHHHHhhccCCC-CCcceEEEec---ChhhHHHHHHHHHHh
Q 011124 162 -------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (493)
Q Consensus 162 -------------------~~~p~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~e~~~~~~l~~~~ 206 (493)
|++|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67899999999999999998 7999999996 566766666666654
No 46
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.86 E-value=4.3e-21 Score=208.84 Aligned_cols=176 Identities=22% Similarity=0.306 Sum_probs=134.0
Q ss_pred CCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCCh
Q 011124 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (493)
Q Consensus 19 ~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~ 98 (493)
...|+++||||++...... . ...+............ ...+.........++..+......+.++||||+|+
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----S--GRVVEQIIRPTGLLDP---LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----C--SEEEEECSCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----h--hCeeeeeeccCCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3679999999998764222 1 1122222111111111 12222222233444455544445678999999999
Q ss_pred HHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCC-----CCChhHHH
Q 011124 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (493)
Q Consensus 99 ~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~-----p~~~~~y~ 172 (493)
..++.|++.|.+ ++.+..+|++|++.+|.+++++|++|+++|||||+++++|+|+|+|++||+++. |.+..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 999999999986 789999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHhhccCCCCCcceEEEecChhhHHHHHHHHH
Q 011124 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (493)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (493)
||+|||||. .+|.+++|+++.+....+.+++
T Consensus 530 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARN-ARGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999998 4899999999877766666543
No 47
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.86 E-value=2.8e-21 Score=206.08 Aligned_cols=128 Identities=24% Similarity=0.358 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHcc-----Cce--------EEEeCCCCHHHHHHHHhcccC-
Q 011124 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-----IAS--------EALHGDISQHQRERTLNGFRQ- 135 (493)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~--------~~lhg~~~~~~r~~~~~~F~~- 135 (493)
.|...|..+|... .+..++||||++++.++.|+..|... +.+ ..+||+|++.+|.+++++|++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 3555555666543 34589999999999999999999852 333 445669999999999999999
Q ss_pred CCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHH
Q 011124 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (493)
Q Consensus 136 g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (493)
++++|||||+++++|||+|++++||+||+|+++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 89999999998776544433
No 48
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.85 E-value=1e-20 Score=200.79 Aligned_cols=167 Identities=21% Similarity=0.202 Sum_probs=133.2
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCChH
Q 011124 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~ 99 (493)
++..||+|+..+..++.+.|-- .++.+. .+.+...+.+ ..+......|..++...+.. +..+.++||||+|++
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l--~vv~IP---tnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGM--EVVVIP---THKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCC--CEEECC---CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHhCC--eEEEEC---CCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHH
Confidence 5778999999988888777642 333332 2222223322 23445666788777776654 345789999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC--------CccEEEeCCCCCChhH
Q 011124 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--------NVDLIIHYELPNDPET 170 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip--------~v~~VI~~~~p~~~~~ 170 (493)
.++.|+..|.+ ++++.+||++..+.++..+.++|+.+ .|+||||+++||+||+ ++.+||++++|.+...
T Consensus 486 ~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~ 563 (822)
T 3jux_A 486 KSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRI 563 (822)
T ss_dssp HHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHH
T ss_pred HHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHH
Confidence 99999999986 89999999997777777777777776 4999999999999998 5669999999999999
Q ss_pred HHHHhhccCCCCCcceEEEecChhh
Q 011124 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
|+||+|||||+|.+|.+++|++..|
T Consensus 564 y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 564 DNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp HHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred HHHhhCccccCCCCeeEEEEechhH
Confidence 9999999999999999999998766
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.85 E-value=6.3e-23 Score=214.57 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=93.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe-----
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----- 161 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~----- 161 (493)
..++||||+|++.|+.+++.|.. .+.+..+|++ +|+++++.|++|+.+|||||+++++|||+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 57999999999999999999986 7899999995 7889999999999999999999999999999 99999
Q ss_pred ---------------CCCCCChhHHHHHhhccCCCCC-cceEEEecChh
Q 011124 162 ---------------YELPNDPETFVHRSGRTGRAGK-EGTAILMFTSS 194 (493)
Q Consensus 162 ---------------~~~p~~~~~y~qr~GR~gR~g~-~g~~i~l~~~~ 194 (493)
|++|.+.++|+||+|||||.|+ +|.+++|+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999775
No 50
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=6.7e-21 Score=198.79 Aligned_cols=123 Identities=33% Similarity=0.545 Sum_probs=109.0
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeC--------CCCHHHHHHHHhcccCCCEE
Q 011124 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg--------~~~~~~r~~~~~~F~~g~~~ 139 (493)
..|...|.+++..+ ..+.++||||++++.++.+++.|.. ++.+..+|| +|++.+|++++++|++++++
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~ 421 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 421 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce
Confidence 34566666666654 4578999999999999999999986 789999999 99999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhh
Q 011124 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 140 iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
|||||+++++|||+|++++||+|++|+++..|+||+||++|.|. |.+++|+++.+
T Consensus 422 vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 422 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 99999999999999999999999999999999999999999997 99999988754
No 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.85 E-value=1.7e-20 Score=212.17 Aligned_cols=126 Identities=25% Similarity=0.327 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cC---------------------------------------ce
Q 011124 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------AS 114 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~---------------------------------------~~ 114 (493)
...+..++... ...++||||+|++.|+.++..|.. .+ .+
T Consensus 324 ~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 324 WPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 33444444432 446999999999999999998864 22 47
Q ss_pred EEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCC---------CChhHHHHHhhccCCCC--C
Q 011124 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP---------NDPETFVHRSGRTGRAG--K 183 (493)
Q Consensus 115 ~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p---------~~~~~y~qr~GR~gR~g--~ 183 (493)
.++|++|++.+|+.+++.|++|.++|||||+++++|||+|++.+|| +++| .++.+|+||+|||||.| .
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-eccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 8999999999999999999999999999999999999999955554 4444 49999999999999988 6
Q ss_pred cceEEEecC--hhhHHHHHHH
Q 011124 184 EGTAILMFT--SSQRRTVRSL 202 (493)
Q Consensus 184 ~g~~i~l~~--~~e~~~~~~l 202 (493)
.|.|++++. +.+...++.+
T Consensus 482 ~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 482 TGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp SEEEEEECCSSCCCHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHH
Confidence 788888883 3445555554
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.85 E-value=3e-21 Score=201.45 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=123.1
Q ss_pred CCcHHHHHHHHHHh-CCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHH
Q 011124 3 AVGFEEDVELILEN-LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (493)
Q Consensus 3 ~~GF~~~l~~Il~~-~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (493)
++.+...+..+... .+++.|+|+||||+|..+..+ +..++..+.+... .+.. .+ .. +..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~----~p~~--~~------~~----~~~~ 183 (451)
T 2jlq_A 123 DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE----IPER--SW------NT----GFDW 183 (451)
T ss_dssp SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC----CCSS--CC------SS----SCHH
T ss_pred CcchHHHHHHHHHhhcCCCceEEEEccCCCccchhh---hcCCCceEecCcc----CCch--hh------HH----HHHH
Confidence 34444444444332 356899999999998864332 3344444433210 0000 00 01 1122
Q ss_pred HHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEE
Q 011124 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (493)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI 160 (493)
+.. ..+++||||+|++.|+.+++.|.+ ++.+..+|+++ ++++++.|++|+++|||||+++++|||+|+ ++||
T Consensus 184 l~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI 256 (451)
T 2jlq_A 184 ITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVI 256 (451)
T ss_dssp HHH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEE
T ss_pred HHh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEE
Confidence 322 357999999999999999999986 78899999985 357999999999999999999999999999 9999
Q ss_pred eCC--------------------CCCChhHHHHHhhccCCCCC-cceEEEecCh
Q 011124 161 HYE--------------------LPNDPETFVHRSGRTGRAGK-EGTAILMFTS 193 (493)
Q Consensus 161 ~~~--------------------~p~~~~~y~qr~GR~gR~g~-~g~~i~l~~~ 193 (493)
||+ .|.+.++|+||+|||||.|+ +|.+++|+..
T Consensus 257 ~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 257 DPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 999 99999999999999999997 8899888743
No 53
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.85 E-value=2.2e-20 Score=208.36 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHcc-------------CceEEEeCCCCHHHHHHHHhcccC-
Q 011124 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 135 (493)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~r~~~~~~F~~- 135 (493)
.|...|..+|... .+..++||||++++.++.|+..|... ..+..+|++|++.+|..++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3555555566442 45689999999999999999999752 245567899999999999999999
Q ss_pred CCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHH
Q 011124 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (493)
Q Consensus 136 g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 197 (493)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 693 g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp -CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999999999999999999999999 999 899999999886643
No 54
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.84 E-value=7.6e-21 Score=218.12 Aligned_cols=180 Identities=17% Similarity=0.230 Sum_probs=144.7
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcC
Q 011124 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK 87 (493)
Q Consensus 8 ~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 87 (493)
....++++.++.+.|+|+||||+++....++...+.++..+... . .....+..+.... .+..+...++..+..
T Consensus 739 ~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~--~~r~~i~~~~~~~---~~~~i~~~il~~l~~ 811 (1151)
T 2eyq_A 739 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--P--ARRLAVKTFVREY---DSMVVREAILREILR 811 (1151)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--C--CBCBCEEEEEEEC---CHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--C--CCccccEEEEecC---CHHHHHHHHHHHHhc
Confidence 34566777777889999999998877766666555554433221 1 1112334333332 344555666667767
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCC
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~ 164 (493)
+.++||||++++.++.+++.|.+ .+.+..+||+|++.+|++++++|++++++|||||+++++|||+|++++||+++.
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~ 891 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 891 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCC
Confidence 89999999999999999999985 467999999999999999999999999999999999999999999999999888
Q ss_pred -CCChhHHHHHhhccCCCCCcceEEEecChh
Q 011124 165 -PNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (493)
Q Consensus 165 -p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (493)
+++...|+||+||+||.|+.|.|++++.+.
T Consensus 892 ~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 892 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 579999999999999999999999998764
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.83 E-value=2.7e-20 Score=210.70 Aligned_cols=177 Identities=17% Similarity=0.239 Sum_probs=147.7
Q ss_pred cCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc--cCceEEEeCCCCHHHHHHHHhcccCCC--EEEEEec
Q 011124 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGK--FTVLVAT 144 (493)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~--~~iLVaT 144 (493)
+....|...|..+++. .+..++||||+++..++.++..|.. ++.+..+||+|++.+|++++++|++++ ++|||||
T Consensus 485 ~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp TTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred cCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 3445688888888877 3678999999999999999999984 789999999999999999999999998 9999999
Q ss_pred ccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHh--CCCceeeCCCCHHHHH
Q 011124 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVL 222 (493)
Q Consensus 145 ~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~--~~~~~~~~~p~~~~~~ 222 (493)
+++++|||+|++++||+||+|+++..|+||+||++|.|+++.+++++...+....+.|.+.+ +.++....+|..+++.
T Consensus 564 ~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~ 643 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIY 643 (968)
T ss_dssp CCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHH
T ss_pred chhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHH
Confidence 99999999999999999999999999999999999999988777765544444445555555 5666667889999999
Q ss_pred HHHHHHHHHHhcCCC-ccchhhhHH
Q 011124 223 ESSAEQVVATLNGVH-PESVEFFTP 246 (493)
Q Consensus 223 ~~~~~~~~~~l~~~~-~~~~~~~~~ 246 (493)
+...+++...+.... .+.++.+.+
T Consensus 644 ~~~~~~l~~~l~~~~~~~~~~~~~~ 668 (968)
T 3dmq_A 644 DSVYNDLINYLASPDQTEGFDDLIK 668 (968)
T ss_dssp HHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHH
Confidence 988888888776543 333444433
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.83 E-value=2.6e-20 Score=201.83 Aligned_cols=191 Identities=18% Similarity=0.173 Sum_probs=141.5
Q ss_pred CCCCcHHHHHHHHHHhCC-CCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011124 1 MLAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (493)
|++++|...++.++..++ .+.|++++|||. +.+..++... .....+.... .. ..+. +.... +.
T Consensus 251 l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~~----r~-~~l~---~~~~~------l~ 314 (677)
T 3rc3_A 251 IRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDYK----RL-TPIS---VLDHA------LE 314 (677)
T ss_dssp GGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEECC----CS-SCEE---ECSSC------CC
T ss_pred cCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEee----ec-chHH---HHHHH------HH
Confidence 468899999999999998 788999999996 3455555433 2333332110 00 0011 00000 00
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccC--CCEEEEEecccccccCCCCCc
Q 011124 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNV 156 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~~~~~Gidip~v 156 (493)
.+.. .....||||+|+++++.+++.|.+ .+.+..+||+|++++|+++++.|++ |+++|||||+++++|||+ +|
T Consensus 315 -~l~~--~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v 390 (677)
T 3rc3_A 315 -SLDN--LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SI 390 (677)
T ss_dssp -SGGG--CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CB
T ss_pred -HHHh--cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Cc
Confidence 0111 134568999999999999999986 7899999999999999999999999 889999999999999999 89
Q ss_pred cEEEeCCC--------------CCChhHHHHHhhccCCCCCc---ceEEEecChhhHHHHHHHHHHhCCCcee
Q 011124 157 DLIIHYEL--------------PNDPETFVHRSGRTGRAGKE---GTAILMFTSSQRRTVRSLERDVGCKFEF 212 (493)
Q Consensus 157 ~~VI~~~~--------------p~~~~~y~qr~GR~gR~g~~---g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (493)
++||++++ |.+.++|+||+|||||.|.. |.|++++.. +...++.+.......++.
T Consensus 391 ~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 391 RRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp SEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSCCCCCCC
T ss_pred cEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcCcchhhh
Confidence 99999999 88999999999999999954 677666554 445666666555555554
No 57
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=206.39 Aligned_cols=103 Identities=28% Similarity=0.518 Sum_probs=89.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-------cCceEEEeCC--------CCHHHHHHHHhcccCCCEEEEEecccccccCC
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGD--------ISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~--------~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gid 152 (493)
..++||||++++.++.|++.|.. ++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999985 4889999999 99999999999999999999999999999999
Q ss_pred CCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecCh
Q 011124 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (493)
Q Consensus 153 ip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (493)
+|+|++||+||+|++++.|+||+||++|.| .+++++.+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999976554 45555443
No 58
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.82 E-value=1.3e-19 Score=204.73 Aligned_cols=122 Identities=20% Similarity=0.340 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHcc-------------CceEEEeCCCCHHHHHHHHhcccC-C
Q 011124 74 KRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ-G 136 (493)
Q Consensus 74 k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~r~~~~~~F~~-g 136 (493)
|...|.++|... ....++||||++++.++.|+..|... ..+..+||+|++.+|.+++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 444455555543 34589999999999999999999852 234566899999999999999999 9
Q ss_pred CEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHH
Q 011124 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (493)
Q Consensus 137 ~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 197 (493)
+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+..
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999999999999999999999999999999999 998 789999998876543
No 59
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.81 E-value=2.6e-20 Score=204.83 Aligned_cols=179 Identities=17% Similarity=0.262 Sum_probs=129.4
Q ss_pred CCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeC
Q 011124 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (493)
Q Consensus 17 ~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~ 96 (493)
.....|+++||||+++....+. ++.+.....+...... ...+..+ .........++..+.+....+.+++|||+
T Consensus 513 ~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~--r~~i~~~--~~~~~~~~~l~~~i~~~l~~g~qvlVf~~ 586 (780)
T 1gm5_A 513 KGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPG--RKEVQTM--LVPMDRVNEVYEFVRQEVMRGGQAFIVYP 586 (780)
T ss_dssp SSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSS--CCCCEEC--CCCSSTHHHHHHHHHHHTTTSCCBCCBCC
T ss_pred hCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCC--CcceEEE--EeccchHHHHHHHHHHHHhcCCcEEEEec
Confidence 3457899999999876654443 3333222111111111 1122222 22333444455555555566789999999
Q ss_pred ChH--------HHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCC
Q 011124 97 TKR--------DADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (493)
Q Consensus 97 t~~--------~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~ 164 (493)
+.+ .++.+++.|.+ .+.+..+||+|++.+|+.++++|++|+++|||||+++++|||+|++++||+++.
T Consensus 587 ~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~ 666 (780)
T 1gm5_A 587 LIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENP 666 (780)
T ss_dssp CC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSC
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCC
Confidence 764 47788888876 357899999999999999999999999999999999999999999999999999
Q ss_pred CC-ChhHHHHHhhccCCCCCcceEEEecChhhHHHHHH
Q 011124 165 PN-DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 201 (493)
Q Consensus 165 p~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~ 201 (493)
|. +.+.|+||+||+||.+++|.|++++++.+....++
T Consensus 667 ~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~r 704 (780)
T 1gm5_A 667 ERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMER 704 (780)
T ss_dssp SSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHH
T ss_pred CCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHH
Confidence 96 78899999999999999999999998533333333
No 60
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.81 E-value=2.3e-20 Score=193.61 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=116.1
Q ss_pred CcHHHHHHHHHHhC-CCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHH
Q 011124 4 VGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (493)
Q Consensus 4 ~GF~~~l~~Il~~~-~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (493)
+.|...+..+.... +.+.|+|+||||+++.+..+.. .++..+.+.. ..+.... ..+..++
T Consensus 107 ~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~---~~~~i~~~~~---------------~~~~~~~-~~~~~~l 167 (431)
T 2v6i_A 107 PASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP---SNSPIIDEET---------------RIPDKAW-NSGYEWI 167 (431)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC---CSSCCEEEEC---------------CCCSSCC-SSCCHHH
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC---CCCceeeccc---------------cCCHHHH-HHHHHHH
Confidence 34555555555443 5689999999999875332211 0111111110 0111111 1111223
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE---
Q 011124 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL--- 158 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~--- 158 (493)
.. ..+++||||++++.++.+++.|.+ .+.+..+||+ +|++++++|++|+++|||||+++++|||+| +.+
T Consensus 168 ~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~ 240 (431)
T 2v6i_A 168 TE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVID 240 (431)
T ss_dssp HS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEE
T ss_pred Hc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEe
Confidence 22 357999999999999999999986 7889999997 588899999999999999999999999999 655
Q ss_pred --------------EEeCCCCCChhHHHHHhhccCCCCC-cceEEEec
Q 011124 159 --------------IIHYELPNDPETFVHRSGRTGRAGK-EGTAILMF 191 (493)
Q Consensus 159 --------------VI~~~~p~~~~~y~qr~GR~gR~g~-~g~~i~l~ 191 (493)
||+++.|.+.++|+||+||+||.+. .+.++++.
T Consensus 241 ~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 241 PRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999984 55666665
No 61
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.80 E-value=8.2e-19 Score=207.09 Aligned_cols=188 Identities=15% Similarity=0.195 Sum_probs=136.5
Q ss_pred HHHHHhCCCCCcEEEEeccCChHHHHHHHHhcC-CCceEEeccccccccccceEEEEEEcCcccH-------HHHHHHHH
Q 011124 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSK-------RTILSDLI 82 (493)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~l~~ll 82 (493)
..|..+++++.|+|+||||+|+ ..++++ |+. ++..+....... -+..++++......... ...+...+
T Consensus 1074 ~~i~~~~~~~~riI~lSATl~N-~~dla~-WL~~~~~~~~~~~~~~--RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i 1149 (1724)
T 4f92_B 1074 RYISSQIERPIRIVALSSSLSN-AKDVAH-WLGCSATSTFNFHPNV--RPVPLELHIQGFNISHTQTRLLSMAKPVYHAI 1149 (1724)
T ss_dssp HHHHHTTSSCCEEEEEESCBTT-HHHHHH-HHTCCSTTEEECCGGG--CSSCEEEEEEEECCCSHHHHHHTTHHHHHHHH
T ss_pred HHHHhhcCCCceEEEEeCCCCC-HHHHHH-HhCCCCCCeEEeCCCC--CCCCeEEEEEeccCCCchhhhhhhcchHHHHH
Confidence 3344566789999999999986 455554 554 332222221111 12223333322222221 12233445
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHcc-----------------------------------CceEEEeCCCCHHHHH
Q 011124 83 TVYAKGGKTIVFTQTKRDADEVSLALTSI-----------------------------------IASEALHGDISQHQRE 127 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-----------------------------------~~~~~lhg~~~~~~r~ 127 (493)
..+....++||||+|++.|+.++..|... ..+.++|++|++.+|+
T Consensus 1150 ~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1150 TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHH
T ss_pred HHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHH
Confidence 55667789999999999999888766320 2478899999999999
Q ss_pred HHHhcccCCCEEEEEecccccccCCCCCccEEEe----------CCCCCChhHHHHHhhccCCCCC--cceEEEecChhh
Q 011124 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----------YELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQ 195 (493)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~----------~~~p~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e 195 (493)
.+++.|++|.++|||||+++++|||+|.+.+||. ...|.++.+|+||+|||||+|. .|.|++++.+.+
T Consensus 1230 ~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~ 1309 (1724)
T 4f92_B 1230 LVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSK 1309 (1724)
T ss_dssp HHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGG
T ss_pred HHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchH
Confidence 9999999999999999999999999999999993 3347799999999999999985 799999999988
Q ss_pred HHHHHHH
Q 011124 196 RRTVRSL 202 (493)
Q Consensus 196 ~~~~~~l 202 (493)
...++++
T Consensus 1310 ~~~~~~l 1316 (1724)
T 4f92_B 1310 KDFFKKF 1316 (1724)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.77 E-value=4.4e-20 Score=193.70 Aligned_cols=117 Identities=24% Similarity=0.437 Sum_probs=102.6
Q ss_pred cccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccccc
Q 011124 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (493)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (493)
...|...|.+++... .+.++||||++++.++.+++.|. +..+|+++++.+|++++++|++++++|||||+++++|
T Consensus 333 ~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~G 407 (472)
T 2fwr_A 333 SKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEG 407 (472)
T ss_dssp CSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSS
T ss_pred ChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcC
Confidence 345677788888763 57899999999999999998873 6789999999999999999999999999999999999
Q ss_pred CCCCCccEEEeCCCCCChhHHHHHhhccCCCCCc-ceEE--EecC
Q 011124 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAI--LMFT 192 (493)
Q Consensus 151 idip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~-g~~i--~l~~ 192 (493)
+|+|++++||++++|+++..|+||+||++|.|.. ..++ .|++
T Consensus 408 ldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~ 452 (472)
T 2fwr_A 408 IDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 452 (472)
T ss_dssp SCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred cccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEe
Confidence 9999999999999999999999999999999844 3444 3444
No 63
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.76 E-value=1.6e-18 Score=183.59 Aligned_cols=184 Identities=11% Similarity=0.109 Sum_probs=128.3
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCChHHHHHHH-HhcCCCceEEecccc----ccccccceEEEEEEcCc-----------
Q 011124 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSR-KYLDNPLNIDLVGNQ----DEKLAEGIKLYAISTTA----------- 71 (493)
Q Consensus 8 ~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~-~~l~~~~~i~~~~~~----~~~~~~~i~~~~~~~~~----------- 71 (493)
.+++.|++.++...++|+||||++.....+.. ..+..+..+.+.... ....+..+....+..+.
T Consensus 240 ~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (510)
T 2oca_A 240 KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTY 319 (510)
T ss_dssp HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCH
T ss_pred ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccch
Confidence 56778889998889999999999776433221 112233322221100 00011111111111111
Q ss_pred ----------ccHHHHHHHHHHHH-cC-CCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCE
Q 011124 72 ----------TSKRTILSDLITVY-AK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (493)
Q Consensus 72 ----------~~k~~~l~~ll~~~-~~-~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~ 138 (493)
..+...+.+++... .. ..++||||+ .+.++.+++.|.+ ...+..+||+|++.+|+++++.|+++++
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 320 QEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 12333344444433 22 345666666 8889999999986 5689999999999999999999999999
Q ss_pred EEEEec-ccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecC
Q 011124 139 TVLVAT-DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (493)
Q Consensus 139 ~iLVaT-~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (493)
+||||| +++++|+|+|++++||++++|+++..|+||+||+||.+..+.++++++
T Consensus 399 ~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 399 IIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999 999999999999999999999999999999999999997774445443
No 64
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.76 E-value=1e-18 Score=169.65 Aligned_cols=124 Identities=15% Similarity=0.273 Sum_probs=97.0
Q ss_pred CcccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHc--cCceEEEeCCCCHHHHHHHHhcccCC-CEE-EEEec
Q 011124 70 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVAT 144 (493)
Q Consensus 70 ~~~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~-iLVaT 144 (493)
....|...|.++|..+ ..+.++||||+++..++.|...|.. ++.+..+||++++.+|++++++|+++ +++ +||+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567899888888765 3568999999999999999999985 78899999999999999999999998 666 79999
Q ss_pred ccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceE--EEecCh
Q 011124 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 193 (493)
Q Consensus 145 ~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~--i~l~~~ 193 (493)
+++++|||++.+++||+||+||++..|+||+||++|.|++..+ |.|++.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 9999999999999999999999999999999999999976654 445544
No 65
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=1.9e-18 Score=203.94 Aligned_cols=184 Identities=20% Similarity=0.310 Sum_probs=132.0
Q ss_pred HhCCCCCcEEEEeccCChHHHHHHHHhcCC-Cc-eEEeccccccccccceEEEEEEcCcccH---HHHHHHH----HHHH
Q 011124 15 ENLPPKRQSMLFSATMPSWVKKLSRKYLDN-PL-NIDLVGNQDEKLAEGIKLYAISTTATSK---RTILSDL----ITVY 85 (493)
Q Consensus 15 ~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~-~~-~i~~~~~~~~~~~~~i~~~~~~~~~~~k---~~~l~~l----l~~~ 85 (493)
..++++.|+|++|||+|+ +.+++ +|+.. +. .+.+..... -+..+++.++....... ...+..+ +..+
T Consensus 239 ~~~~~~~riI~LSATl~N-~~dvA-~wL~~~~~~~~~~~~~~~--RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPN-YEDVA-TFLRVDPAKGLFYFDNSF--RPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH 314 (1724)
T ss_dssp HHHTCCCEEEEEECSCTT-HHHHH-HHTTCCHHHHEEECCGGG--CSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCCCcEEEEecccCC-HHHHH-HHhCCCCCCCeEEECCCC--ccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHH
Confidence 456788999999999986 44555 46653 21 122221111 12234444444333322 2222222 2222
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHcc--------------------------------------CceEEEeCCCCHHHHH
Q 011124 86 AKGGKTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRE 127 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~~~~~~r~ 127 (493)
....++||||+|++.|+.++..|.+. ..+.++|++|++.+|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 34579999999999999888877421 2378899999999999
Q ss_pred HHHhcccCCCEEEEEecccccccCCCCCccEEEe----CC------CCCChhHHHHHhhccCCCC--CcceEEEecChhh
Q 011124 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (493)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~----~~------~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e 195 (493)
.+++.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|+||+|||||.| ..|.+++++.+.+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 9999999999999999999999999999999995 43 3568999999999999987 5799999998877
Q ss_pred HHHHHHH
Q 011124 196 RRTVRSL 202 (493)
Q Consensus 196 ~~~~~~l 202 (493)
...+..+
T Consensus 475 ~~~~~~l 481 (1724)
T 4f92_B 475 LQYYLSL 481 (1724)
T ss_dssp CCHHHHH
T ss_pred HHHHHHH
Confidence 6555554
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.74 E-value=1.3e-17 Score=179.76 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=88.2
Q ss_pred HHHHcCCCeEEEEeCChHHHHHHHHHHHccC---------ceEEEeCCCCHHHHHHHHhcccCCCEE---EEEecccccc
Q 011124 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFT---VLVATDVAAR 149 (493)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~---------~~~~lhg~~~~~~r~~~~~~F~~g~~~---iLVaT~~~~~ 149 (493)
+.......++||||++++.|+.+++.|.+.. .+..+||++++ +|++++++|++++.+ |||||+++++
T Consensus 433 l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~ 511 (590)
T 3h1t_A 433 MKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTT 511 (590)
T ss_dssp HHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTT
T ss_pred HHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhc
Confidence 3333455899999999999999999997521 27789999864 799999999998766 8999999999
Q ss_pred cCCCCCccEEEeCCCCCChhHHHHHhhccCCCCC
Q 011124 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (493)
Q Consensus 150 Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 183 (493)
|||+|++++||++++|+++..|+||+||++|.+.
T Consensus 512 GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999999999999999763
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.62 E-value=1.2e-15 Score=161.15 Aligned_cols=118 Identities=17% Similarity=0.305 Sum_probs=100.6
Q ss_pred ccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHc--cCceEEEeCCCCHHHHHHHHhcccCC-CEE-EEEeccc
Q 011124 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATDV 146 (493)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~-iLVaT~~ 146 (493)
..|...+.+++... ..+.++||||+++..++.++..|.. ++.+..+||++++.+|++++++|+++ ..+ +||+|++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 46777777777654 4568999999999999999999985 78899999999999999999999988 555 7999999
Q ss_pred ccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEE
Q 011124 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (493)
Q Consensus 147 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~ 189 (493)
+++|||+|.+++||+||+|+++..|+||+||++|.|++..+++
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 9999999999999999999999999999999999997665533
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.59 E-value=8.3e-15 Score=159.24 Aligned_cols=135 Identities=12% Similarity=0.236 Sum_probs=112.8
Q ss_pred ccHHHHHHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCE---EEEEecc
Q 011124 72 TSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATD 145 (493)
Q Consensus 72 ~~k~~~l~~ll~~~~--~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~---~iLVaT~ 145 (493)
..|..+|..++.... .+.++||||+++..++.|...|.. ++.+..+||++++.+|++++++|+++.. .+||+|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 457778888777653 468999999999999999999985 8999999999999999999999999865 5899999
Q ss_pred cccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEE--EecChh--hHHHHHHHHHHh
Q 011124 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI--LMFTSS--QRRTVRSLERDV 206 (493)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i--~l~~~~--e~~~~~~l~~~~ 206 (493)
++++|||++.+++||+||+||++..|.|++||+.|.|++..++ .|++.. |...++.++++.
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~ 542 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKK 542 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHH
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999665444 344432 444455444443
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.7e-14 Score=157.86 Aligned_cols=137 Identities=18% Similarity=0.314 Sum_probs=116.4
Q ss_pred ccHHHHHHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCE---EEEEeccc
Q 011124 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATDV 146 (493)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~---~iLVaT~~ 146 (493)
..|+.+|..+|..+. .+.++||||..+..++.|...|.. ++.+..+||.+++.+|++++++|+++.. .+||+|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 457888888887763 457999999999999999999985 8999999999999999999999998544 59999999
Q ss_pred ccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceE--EEecCh--hhHHHHHHHHHHhCC
Q 011124 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS--SQRRTVRSLERDVGC 208 (493)
Q Consensus 147 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~--i~l~~~--~e~~~~~~l~~~~~~ 208 (493)
++.|||++.+++||+||+||++..++|++||+.|.|++..+ |.|++. -|...++.++++...
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999965444 445544 356677776666544
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.50 E-value=2.3e-13 Score=153.58 Aligned_cols=134 Identities=11% Similarity=0.108 Sum_probs=99.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-c------------Cce-EEEeCC----------C----------CH----------
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-I------------IAS-EALHGD----------I----------SQ---------- 123 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~------------~~~-~~lhg~----------~----------~~---------- 123 (493)
..++||||+++..|..+++.|.+ . +.+ .++|++ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 35899999999999999999875 2 344 455542 2 22
Q ss_pred -------------------HHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCc
Q 011124 124 -------------------HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 184 (493)
Q Consensus 124 -------------------~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~ 184 (493)
.+|..++++|++++++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|....
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 248889999999999999999999999999999 788999999999999999999998753
Q ss_pred ----ceEEEecChhhHHHHHHHHHHhCCCcee-eCCCCHHHHHH
Q 011124 185 ----GTAILMFTSSQRRTVRSLERDVGCKFEF-VSPPVVEDVLE 223 (493)
Q Consensus 185 ----g~~i~l~~~~e~~~~~~l~~~~~~~~~~-~~~p~~~~~~~ 223 (493)
|.++.|+.. .....+.+..+....... +..++.+++.+
T Consensus 696 ~K~~G~IVdf~~~-~~~l~~Al~~y~~~~~~~~~~~~~~~~~~~ 738 (1038)
T 2w00_A 696 TKTFGNIVTFRDL-ERSTIDAITLFGDKNTKNVVLEKSYTEYME 738 (1038)
T ss_dssp TCCSEEEEESSCC-HHHHHHHHHHTSCSSHHHHHBCCCHHHHHH
T ss_pred CCCcEEEEEcccc-HHHHHHHHHHHhCCCCcCceehhhhHHHHH
Confidence 667777764 334555565555444322 22344444444
No 71
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=98.97 E-value=1.3e-09 Score=86.20 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=72.8
Q ss_pred HcCCCCCCCCcccccCCCCeEEEEEeecCccccCCcchhhHHHHhhhhc-CcCcCccccEEEeeccccceeEeecCHHHH
Q 011124 267 LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY-PTAADEIGKIHIIADDRVQGAVFDLPEEIA 345 (493)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a 345 (493)
++|+++ ++.|||+++.++++|+.+..+++ .-+|..++.+|.+.. +...++|++|++++|. +|++||||++.+
T Consensus 2 ~SG~te-~~~RSLLt~~eG~~Tl~l~~~~~----i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~--~GavFDvP~e~~ 74 (92)
T 2e29_A 2 SSGSSG-FEPRSLITSDKGFVTMTLESLEE----IQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--MGVCFDVPTTES 74 (92)
T ss_dssp CCSCSC-CCCCCCCCCCCCEEEEEEECSSC----CSSTHHHHHHHHHHSCHHHHTTCEEEEECTTS--SEEEEEEEHHHH
T ss_pred CCCcCC-CCCcccccCCCCCEEEEEecCCc----ccchHHHHHHHHHhcCHHHHhhhCeEEEecCC--CEEEEECcHHHH
Confidence 467777 55699999999999999988763 456888889999854 4456789999999986 599999999999
Q ss_pred HHHHhhcCCCCCceeee
Q 011124 346 KELLNKQIPPGNTISKI 362 (493)
Q Consensus 346 ~~~~~~~~~~~~~i~~~ 362 (493)
+++++.+....+.++++
T Consensus 75 ~~~~~~~~~~~~~l~v~ 91 (92)
T 2e29_A 75 ERLQAEWHDSDWILSVP 91 (92)
T ss_dssp HHHHHHCCSSSCEEECC
T ss_pred HHHHhhCCCCceEEEec
Confidence 99999987644666654
No 72
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.66 E-value=8.1e-09 Score=61.60 Aligned_cols=18 Identities=44% Similarity=1.198 Sum_probs=16.4
Q ss_pred CccccCCCCCcccCCCCC
Q 011124 476 GACFNCGKSGHRASECPN 493 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~~ 493 (493)
..||+||++||||||||+
T Consensus 3 ~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CeeEeCCCCCcccccCCC
Confidence 359999999999999995
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.57 E-value=2.2e-06 Score=93.40 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=116.4
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHHH-HHHHHHHHcCCCeEEEEeCChH
Q 011124 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~-l~~ll~~~~~~~~~IVF~~t~~ 99 (493)
.+..||.|...+..++.+.|--+ ++.+. .+.+.....+ -.+......|..+ +.++...+..+.++||+|.|.+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~--Vv~IP---Tn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe 454 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMD--VVVVP---TNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIE 454 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCC--EEECC---CSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHH
T ss_pred HheecCCCchHHHHHHHHHhCCC--EEEcC---CCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHH
Confidence 56679999988887777766443 23222 1222222222 2223344456555 4455566677899999999999
Q ss_pred HHHHHHHHHH----------------------------------------------------------------------
Q 011124 100 DADEVSLALT---------------------------------------------------------------------- 109 (493)
Q Consensus 100 ~~~~l~~~L~---------------------------------------------------------------------- 109 (493)
..+.|+..|.
T Consensus 455 ~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 534 (997)
T 2ipc_A 455 KSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAV 534 (997)
T ss_dssp HHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhh
Confidence 9999999888
Q ss_pred ------c-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCc-------------------c------
Q 011124 110 ------S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV-------------------D------ 157 (493)
Q Consensus 110 ------~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v-------------------~------ 157 (493)
+ +++..+|...-...+-+.|-++=+.| .|-|||+.|.||.||.=- .
T Consensus 535 ~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~ 612 (997)
T 2ipc_A 535 HTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELF 612 (997)
T ss_dssp HHHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHH
T ss_pred hhhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccc
Confidence 2 45566676664444444444444544 489999999999998421 1
Q ss_pred -------------------------------------------------EEEeCCCCCChhHHHHHhhccCCCCCcceEE
Q 011124 158 -------------------------------------------------LIIHYELPNDPETFVHRSGRTGRAGKEGTAI 188 (493)
Q Consensus 158 -------------------------------------------------~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i 188 (493)
|||-...+.|..-=.|-.||+||.|.+|.+.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSr 692 (997)
T 2ipc_A 613 IKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSR 692 (997)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEE
T ss_pred cccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeE
Confidence 7999999999999999999999999999998
Q ss_pred EecChhh
Q 011124 189 LMFTSSQ 195 (493)
Q Consensus 189 ~l~~~~e 195 (493)
+|++-.|
T Consensus 693 F~LSLeD 699 (997)
T 2ipc_A 693 FYVSFDD 699 (997)
T ss_dssp EEEESSS
T ss_pred EEEECCh
Confidence 8876544
No 74
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.49 E-value=7.4e-08 Score=63.25 Aligned_cols=17 Identities=41% Similarity=1.085 Sum_probs=16.0
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+||+.||||+|||+
T Consensus 12 ~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 12 QCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp SCSSSCCTTCCTTSCSS
T ss_pred eeeECCCCCcchhhCcC
Confidence 59999999999999995
No 75
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.40 E-value=1.1e-06 Score=93.12 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=49.1
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEE--ecccccccCCCCC----ccEEE
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV--ATDVAARGLDIPN----VDLII 160 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV--aT~~~~~Gidip~----v~~VI 160 (493)
.++.+|||++|...++.+++.|.. +. ..+++.. .+|+++++.|+++. .||+ +|+.+++|||+|+ +++||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 457999999999999999988864 22 3455553 46888999998865 4665 8999999999997 88999
Q ss_pred eCCCCC
Q 011124 161 HYELPN 166 (493)
Q Consensus 161 ~~~~p~ 166 (493)
++++|.
T Consensus 458 i~~lPf 463 (540)
T 2vl7_A 458 LAGLPY 463 (540)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999884
No 76
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=98.26 E-value=6.9e-07 Score=68.53 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=52.5
Q ss_pred EEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeeccccceeEeecCHHHHHHHHhhcCC
Q 011124 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~~~ 354 (493)
+|++++.++ ++++.|.+|+++|++...+..++||+|++.+++ +||++|.+.++++++.+..
T Consensus 1 ~~~~i~~Gr---k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~----s~v~v~~~~~~~~~~~l~~ 61 (76)
T 2g0c_A 1 MKLYFNGGK---KKKIRAVDFVGTIAKIDGVSADDIGIITIMDNA----SYVEILNGKGPHVLKVMKN 61 (76)
T ss_dssp CEEEESCCC---C----CHHHHHHHHTSTTCCGGGEEEEEECSSC----EEEEECTTCHHHHHHHHTT
T ss_pred CEEEEeCCC---ccCCCHHHHHHHHHHccCCChhhccEEEEeCCc----EEEEECHHHHHHHHHHhcc
Confidence 378899998 899999999999999999999999999999998 7999999999999988654
No 77
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.26 E-value=2.1e-07 Score=66.00 Aligned_cols=17 Identities=41% Similarity=1.085 Sum_probs=16.0
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+||+.||||+|||.
T Consensus 25 ~C~~Cge~GH~ardCp~ 41 (56)
T 1u6p_A 25 QCAYCKEKGHWAKDCPK 41 (56)
T ss_dssp BCSSSCCBSSCGGGCTT
T ss_pred cceeCCCCCcccccCcC
Confidence 59999999999999995
No 78
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.23 E-value=2.6e-07 Score=56.61 Aligned_cols=17 Identities=53% Similarity=1.300 Sum_probs=15.8
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.|||||++||+|+|||.
T Consensus 8 ~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 8 RCWNCGKEGHSARQCRA 24 (29)
T ss_dssp BCTTTSCBSSCGGGCCS
T ss_pred EEEECCccccCHhHCcc
Confidence 49999999999999984
No 79
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=1.2e-06 Score=61.78 Aligned_cols=16 Identities=56% Similarity=1.481 Sum_probs=15.5
Q ss_pred ccccCCCCCcccCCCC
Q 011124 477 ACFNCGKSGHRASECP 492 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~ 492 (493)
.||+||++|||++|||
T Consensus 9 ~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 9 TCFRCGKPGHYIKNCP 24 (55)
T ss_dssp CCTTTCCTTSCGGGCS
T ss_pred ccccCCCcCcccccCC
Confidence 5999999999999999
No 80
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.80 E-value=0.00016 Score=77.70 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc--cccccCCCCC--ccEEEeC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLIIHY 162 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~--~~~~Gidip~--v~~VI~~ 162 (493)
.++.+|||+++....+.+++.|. .+... ..-+++..++..++++|+ ++-.||++|. .+.+|||+|+ ...||..
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 36789999999999999988876 33222 444555678999999999 7778999975 8999999985 5578887
Q ss_pred CCCCCh-----------------------------hHHHHHhhccCCCCCcceEEEecCh
Q 011124 163 ELPNDP-----------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (493)
Q Consensus 163 ~~p~~~-----------------------------~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (493)
.+|... ....|-+||.=|.-..--+++++++
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 777421 1125888998886544334444444
No 81
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.80 E-value=8.1e-06 Score=53.71 Aligned_cols=17 Identities=47% Similarity=1.331 Sum_probs=16.1
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+|+++||+|+|||+
T Consensus 23 ~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 23 GCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SCTTTCCSSSCTTTSCC
T ss_pred ccccCCCCCCccCcCcC
Confidence 59999999999999996
No 82
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.75 E-value=8e-06 Score=53.05 Aligned_cols=17 Identities=35% Similarity=1.087 Sum_probs=16.0
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+|+++||+|+|||+
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 49999999999999996
No 83
>3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus}
Probab=97.72 E-value=6.4e-05 Score=56.57 Aligned_cols=77 Identities=25% Similarity=0.350 Sum_probs=61.3
Q ss_pred CCcccccCCCCeEEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeeccccceeEeecCHHHHHHHHhhcCC
Q 011124 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (493)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~~~ 354 (493)
.++||++++++|+|+-+.-.+ ++...++.+|.+... +||+|..+.. |+|+|++.+..+ ..
T Consensus 2 ~~~SLLTGEEGw~Tlkl~G~r------LS~~R~VAlLk~aG~----~iGkI~~~~~----gayaDlr~e~l~------~~ 61 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKATGPR------LSLPRLVALLKGQGL----EVGKVAEAEG----GFYVDLRPEARP------EV 61 (88)
T ss_dssp CCBCTTTCCBSCEEEEEECTT------CCHHHHHHHHHHTTC----CEEEEEEETT----EEEEEECTTCCC------CC
T ss_pred CcccccccCcceEEEEEeccc------ccHHHHHHHHHHccc----ccccEEeccc----eeEEecChHHcc------cc
Confidence 458999999999999997544 888888888887654 8999998775 599999888766 33
Q ss_pred CCCceeeeccCCCCCCC
Q 011124 355 PGNTISKITKLPALQDD 371 (493)
Q Consensus 355 ~~~~i~~~~~lP~~~~~ 371 (493)
.++.+++.+++|...+.
T Consensus 62 ~~~~~e~A~~v~~~~E~ 78 (88)
T 3i31_A 62 AGLRLEPARRVEGLLEI 78 (88)
T ss_dssp TTCEEEECCSCCCCC--
T ss_pred ccceehhhhhccccccC
Confidence 67888888888887765
No 84
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.71 E-value=1.1e-05 Score=53.10 Aligned_cols=17 Identities=59% Similarity=1.341 Sum_probs=15.7
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||||+++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 39999999999999994
No 85
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.66 E-value=1.5e-05 Score=51.79 Aligned_cols=16 Identities=56% Similarity=1.410 Sum_probs=15.3
Q ss_pred cccCCCCCcccCCCCC
Q 011124 478 CFNCGKSGHRASECPN 493 (493)
Q Consensus 478 c~~c~~~gh~~~~c~~ 493 (493)
||||+++||+++|||.
T Consensus 3 C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCRA 18 (37)
T ss_dssp BSSSCCSSCCTTTSSC
T ss_pred ccccCCCCcchhhCcC
Confidence 9999999999999984
No 86
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.66 E-value=1.7e-05 Score=57.58 Aligned_cols=18 Identities=39% Similarity=0.905 Sum_probs=16.4
Q ss_pred CccccCCCCCcccCCCCC
Q 011124 476 GACFNCGKSGHRASECPN 493 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~~ 493 (493)
..||+|+++||||+|||+
T Consensus 31 ~~C~~Cg~~GH~ar~C~~ 48 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKS 48 (60)
T ss_dssp CSCSSCSSCSSCSTTCCC
T ss_pred cceeECCCCCCccCcCCC
Confidence 459999999999999995
No 87
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.62 E-value=3.9e-05 Score=58.00 Aligned_cols=18 Identities=28% Similarity=0.700 Sum_probs=15.8
Q ss_pred CccccCCCCCcccCCCCC
Q 011124 476 GACFNCGKSGHRASECPN 493 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~~ 493 (493)
..||+|+++||+|+|||+
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPL 64 (74)
T ss_dssp CCCTTTCCTTSCGGGCTT
T ss_pred CccCCcCCcCCccCcCcC
Confidence 359999999999999985
No 88
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.58 E-value=4.4e-05 Score=72.30 Aligned_cols=51 Identities=37% Similarity=0.690 Sum_probs=44.9
Q ss_pred CCCCcHHHHHHHHHHh--CCC--CCcEEEEeccCChHHHHHHHHhcCCCceEEec
Q 011124 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV 51 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~--~~~--~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~ 51 (493)
|++++|.++++.|+.. ++. +.|+++||||+|+++.++++.++++|..|.+.
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 4678999999999995 454 78999999999999999999999999888764
No 89
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.55 E-value=2.4e-05 Score=54.18 Aligned_cols=17 Identities=53% Similarity=1.300 Sum_probs=14.1
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+|+++||+++|||.
T Consensus 8 ~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 8 RCWNCGKEGHSARQCRA 24 (49)
T ss_dssp BCTTTCCBTCCTTTCCC
T ss_pred eeeecCCCCcChhhCcC
Confidence 48888888888888874
No 90
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.50 E-value=3.2e-05 Score=53.58 Aligned_cols=17 Identities=47% Similarity=1.398 Sum_probs=15.9
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+|+++||+++|||+
T Consensus 29 ~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 29 GCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp SCSSSCCSSCCGGGCCS
T ss_pred eeCcCCCcCCccCCCcC
Confidence 49999999999999995
No 91
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.48 E-value=2.6e-05 Score=60.29 Aligned_cols=18 Identities=39% Similarity=1.030 Sum_probs=16.4
Q ss_pred CccccCCCCCcccCCCCC
Q 011124 476 GACFNCGKSGHRASECPN 493 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~~ 493 (493)
..|||||+.||+++|||+
T Consensus 47 ~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp CBCSSSSCBSSCGGGCSS
T ss_pred CeecccCCCCcCcccCCc
Confidence 359999999999999995
No 92
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.47 E-value=0.00014 Score=54.93 Aligned_cols=17 Identities=47% Similarity=1.146 Sum_probs=15.8
Q ss_pred CccccCCCCCcccCCCC
Q 011124 476 GACFNCGKSGHRASECP 492 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~ 492 (493)
..||||+++||+++|||
T Consensus 25 ~~C~~Cg~~GH~a~~C~ 41 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECK 41 (74)
T ss_dssp SCCTTTCCSSSCTTTCS
T ss_pred CcccccCCcCcCcccCC
Confidence 35999999999999998
No 93
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.46 E-value=3e-05 Score=56.43 Aligned_cols=17 Identities=41% Similarity=1.327 Sum_probs=14.4
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+|+++||||+|||+
T Consensus 6 ~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 6 LCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp BCSSSCCBTCCGGGCTT
T ss_pred cccccCCCCeehhhCcC
Confidence 49999999999999984
No 94
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.45 E-value=4.3e-05 Score=55.60 Aligned_cols=18 Identities=33% Similarity=0.785 Sum_probs=16.4
Q ss_pred CccccCCCCCcccCCCCC
Q 011124 476 GACFNCGKSGHRASECPN 493 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~~ 493 (493)
..||+|+++||+|+|||+
T Consensus 31 ~~C~~Cg~~GH~ar~C~~ 48 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRK 48 (61)
T ss_dssp SBCTTTCCBSSCGGGCCC
T ss_pred CeeCCCCCCCCCcCCCcC
Confidence 359999999999999995
No 95
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=97.43 E-value=0.00012 Score=63.48 Aligned_cols=17 Identities=29% Similarity=0.763 Sum_probs=15.9
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+|+++||+++|||+
T Consensus 121 ~C~~Cg~~GH~~r~Cp~ 137 (148)
T 3ts2_A 121 KCHFCQSINHMVASCPL 137 (148)
T ss_dssp CCTTTCCSSCCGGGCTT
T ss_pred cccccCCcCCEeccCcC
Confidence 49999999999999995
No 96
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.40 E-value=4.5e-05 Score=54.26 Aligned_cols=17 Identities=41% Similarity=1.304 Sum_probs=15.8
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+|+++||+|+|||+
T Consensus 35 ~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 35 GCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred EeCCCCCcCCccCCCcC
Confidence 49999999999999995
No 97
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.37 E-value=9.5e-05 Score=54.11 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=16.2
Q ss_pred CCccccCCCCCcccCCCCC
Q 011124 475 GGACFNCGKSGHRASECPN 493 (493)
Q Consensus 475 ~~~c~~c~~~gh~~~~c~~ 493 (493)
...||+|+++||+|+|||+
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPL 47 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTG
T ss_pred CCccCCcCCcCCccCcCCC
Confidence 4579999999999999984
No 98
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.36 E-value=0.0018 Score=63.11 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=84.9
Q ss_pred cccHHHHHHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccc
Q 011124 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (493)
Q Consensus 71 ~~~k~~~l~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (493)
.+.|+.+|.++|..+. .+.++|||++..+..+.+..++. +++....+.|.....++ +. .+....|.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCC
Confidence 5679999999998774 45699999999999999999998 47888888888544322 21 234555655566656
Q ss_pred ccCC-----CCCccEEEeCCCCCChhHH-HHHhhccCCCC----CcceEEEecChhh
Q 011124 149 RGLD-----IPNVDLIIHYELPNDPETF-VHRSGRTGRAG----KEGTAILMFTSSQ 195 (493)
Q Consensus 149 ~Gid-----ip~v~~VI~~~~p~~~~~y-~qr~GR~gR~g----~~g~~i~l~~~~e 195 (493)
-|++ +...+.||.||.-|++..= +|.+-|+.|.+ ++-.+|.|++...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6675 6788999999999998874 88888887762 4556777776644
No 99
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.35 E-value=5.4e-05 Score=55.42 Aligned_cols=17 Identities=47% Similarity=1.085 Sum_probs=15.7
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||||+++||+++|||.
T Consensus 9 ~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 9 RCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCSSSCCSSSCTTTCCS
T ss_pred cccccCCCCcChhhCCC
Confidence 49999999999999993
No 100
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.31 E-value=5.8e-05 Score=53.68 Aligned_cols=17 Identities=59% Similarity=1.318 Sum_probs=15.8
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+|+++||+|+|||.
T Consensus 14 ~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred ceeeeCCCCcChhhcCC
Confidence 49999999999999984
No 101
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.99 E-value=0.0057 Score=64.75 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=52.7
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEec--ccccccCCCC-----CccEE
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT--DVAARGLDIP-----NVDLI 159 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT--~~~~~Gidip-----~v~~V 159 (493)
.++.+|||+++....+.+++.+ ...+..-.-+++. ..+++.|+...-.||++| ..+.+|||+| .+..|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~--~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRI--SLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTC--CSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHhc--CCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 4679999999999999988732 2333332234554 446666743333799998 6999999999 46788
Q ss_pred EeCCCCC
Q 011124 160 IHYELPN 166 (493)
Q Consensus 160 I~~~~p~ 166 (493)
|...+|.
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 8877775
No 102
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.86 E-value=0.00045 Score=59.74 Aligned_cols=17 Identities=47% Similarity=1.085 Sum_probs=15.8
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||||++.||+|++||.
T Consensus 99 ~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 99 RCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CCTTTCCSSCCGGGCCS
T ss_pred cccEeCCccchhhhCCC
Confidence 49999999999999984
No 103
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.00058 Score=57.30 Aligned_cols=19 Identities=37% Similarity=0.957 Sum_probs=17.2
Q ss_pred CCccccCCCCCcccCCCCC
Q 011124 475 GGACFNCGKSGHRASECPN 493 (493)
Q Consensus 475 ~~~c~~c~~~gh~~~~c~~ 493 (493)
...||||++.||||+|||+
T Consensus 105 ~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 105 TIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCTTTTSSSCTTTTTSCC
T ss_pred CCCcCCCCCCCcCcccCcC
Confidence 4579999999999999996
No 104
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.70 E-value=0.023 Score=62.44 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=71.2
Q ss_pred ccHHH-HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 72 TSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 72 ~~k~~-~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.-|.. .+..++..+..+.++||.+||+..+.++++.+.+ .+.+..+||+++..++..+++.+.+|..+|+|+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 34543 3333444444568999999999999999888764 47899999999999999999999999999999997
Q ss_pred c-ccccCCCCCccEEEe
Q 011124 146 V-AARGLDIPNVDLIIH 161 (493)
Q Consensus 146 ~-~~~Gidip~v~~VI~ 161 (493)
. +...+++.++.+||.
T Consensus 480 ~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVII 496 (780)
T ss_dssp THHHHCCCCSCCCEEEE
T ss_pred HHHhhhhhccCCceEEe
Confidence 4 344578888898874
No 105
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.0052 Score=51.36 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=16.3
Q ss_pred CccccCCCCCcccCCCCC
Q 011124 476 GACFNCGKSGHRASECPN 493 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~~ 493 (493)
..||+|++.||+|+|||+
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPS 82 (124)
T ss_dssp CSSSSSCSSCCCTTTCCC
T ss_pred ccCCCCCcCCcchhhCCC
Confidence 459999999999999995
No 106
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.39 E-value=0.031 Score=56.46 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=64.8
Q ss_pred HHHHcCCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccc----ccCCC
Q 011124 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA----RGLDI 153 (493)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~----~Gidi 153 (493)
+.......++||.+||++.+.++++.+.. .+.+..+||+.+..++...++.+.++..+|+|+|+-.- .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 34444678999999999999999999886 56899999999999998888999888899999997322 12556
Q ss_pred CCccEEEe
Q 011124 154 PNVDLIIH 161 (493)
Q Consensus 154 p~v~~VI~ 161 (493)
..+++||.
T Consensus 138 ~~~~~iVi 145 (414)
T 3oiy_A 138 KRFDFVFV 145 (414)
T ss_dssp CCCSEEEE
T ss_pred ccccEEEE
Confidence 67888774
No 107
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.97 E-value=0.074 Score=60.81 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=68.9
Q ss_pred ccHHHHH-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011124 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 72 ~~k~~~l-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
.-|..+. ..++.....+.++||.+||++.|.++++.+.. .+.+..+||+++..++...++.+.++..+|||+|+-
T Consensus 104 SGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~ 183 (1104)
T 4ddu_A 104 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 183 (1104)
T ss_dssp CCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHH
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHH
Confidence 4454432 33344445678999999999999999999987 358999999999988888999999998999999973
Q ss_pred c-----cccCCCCCccEEEe
Q 011124 147 A-----ARGLDIPNVDLIIH 161 (493)
Q Consensus 147 ~-----~~Gidip~v~~VI~ 161 (493)
. .. +++.++.+||.
T Consensus 184 rL~~~l~~-l~~~~l~~lVi 202 (1104)
T 4ddu_A 184 FVSKNREK-LSQKRFDFVFV 202 (1104)
T ss_dssp HHHHSHHH-HHTSCCSEEEE
T ss_pred HHHHHHHh-hcccCcCEEEE
Confidence 2 22 55678888874
No 108
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.61 E-value=0.75 Score=42.37 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=53.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----cc-ccCCCCCc
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~-~Gidip~v 156 (493)
..++||.++|++.+.++++.+.+ .+.+..++|+.+..++...+.. ..+|+|+|+- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999999999887764 4788899999988777666554 4689999962 22 24577888
Q ss_pred cEEEe
Q 011124 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88774
No 109
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.25 E-value=0.22 Score=57.24 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=69.9
Q ss_pred ccHHHH-HHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 72 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 72 ~~k~~~-l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.-|..+ +..++.....+.++||.|||+..+.+.++.+.+ .+.+..+++..+..++..+++.+.+|+.+|+|+|.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 345433 323334445667999999999999999988874 25688899999999999999999999999999995
Q ss_pred -cccccCCCCCccEEE
Q 011124 146 -VAARGLDIPNVDLII 160 (493)
Q Consensus 146 -~~~~Gidip~v~~VI 160 (493)
.+...+.+.++.+||
T Consensus 715 ~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp HHHHSCCCCSSEEEEE
T ss_pred HHHhCCccccccceEE
Confidence 455568888888877
No 110
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.37 E-value=0.2 Score=53.19 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=53.2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcc--cCCCEEEEEecc
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF--RQGKFTVLVATD 145 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F--~~g~~~iLVaT~ 145 (493)
....+||.+|+++.+++.+..|.. ++.+..++++++..++..++..+ ..+..+|||+|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 467999999999999999999886 78999999999999999988888 567899999998
No 111
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=92.31 E-value=0.94 Score=41.92 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=50.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc------cccCCCCCcc
Q 011124 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNVD 157 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidip~v~ 157 (493)
.++||.++|++.+.++++.+.+ .+.+..++|+.+..+....+. ...+|+|+|+-. ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhC----CCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 5899999999999999888764 356788899887665544442 256899999721 2235677888
Q ss_pred EEEe
Q 011124 158 LIIH 161 (493)
Q Consensus 158 ~VI~ 161 (493)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
No 112
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.08 E-value=0.99 Score=41.89 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=52.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----cc--ccCCCCC
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA--RGLDIPN 155 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~--~Gidip~ 155 (493)
..++||.++|++.+.++++.+.+ .+.+..++|+.+..++...+. ...+|+|+|+- +. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 35799999999999999887763 467889999988766555443 25789999962 11 3567778
Q ss_pred ccEEEe
Q 011124 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887774
No 113
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.84 E-value=0.19 Score=52.65 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=60.3
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccc------ccCCCCCccEE
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 159 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~------~Gidip~v~~V 159 (493)
..+++||.+|++..+++....|.. ++.+..+|+..+..++..++..+..+..+|||+|+--- .-++..++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 457999999999999999999886 78899999999999999999999999999999996321 12333556666
Q ss_pred E
Q 011124 160 I 160 (493)
Q Consensus 160 I 160 (493)
|
T Consensus 144 V 144 (523)
T 1oyw_A 144 A 144 (523)
T ss_dssp E
T ss_pred E
Confidence 5
No 114
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=91.13 E-value=0.66 Score=42.19 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc------ccccCCCCCc
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidip~v 156 (493)
...++||.++|++.+.++++.+.+ .+.+..++++.+..++...+.. ..+|+|+|+- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999998875 4678888988776555444432 4689999962 1224556677
Q ss_pred cEEEe
Q 011124 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 76663
No 115
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.15 E-value=2.5 Score=37.89 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=50.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc------cccCCCCCc
Q 011124 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidip~v 156 (493)
.++||.|+|++.++++++.+.+ .+.+..++|+.+..++...+. ++..+|+|+|.-. ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 4899999999999999888764 367889999988766654443 3456899999621 223556666
Q ss_pred cEEE
Q 011124 157 DLII 160 (493)
Q Consensus 157 ~~VI 160 (493)
++||
T Consensus 160 ~~lV 163 (220)
T 1t6n_A 160 KHFI 163 (220)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7666
No 116
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.38 E-value=0.8 Score=41.81 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=57.2
Q ss_pred CcccHHHH-HHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEE
Q 011124 70 TATSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 70 ~~~~k~~~-l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (493)
.-.-|..+ +..++..+ ....++||.++|++.++++++.+.+ .+.+..++|+.+..++...++ ..+
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~ 144 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCH 144 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCS
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCC
Confidence 33456543 33334433 2346899999999999999988874 356888999998877665543 468
Q ss_pred EEEecccc------cccCCCCCccEEE
Q 011124 140 VLVATDVA------ARGLDIPNVDLII 160 (493)
Q Consensus 140 iLVaT~~~------~~Gidip~v~~VI 160 (493)
|+|+|+-. ...+++.++++||
T Consensus 145 Iiv~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 145 IAVGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp EEEECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred EEEECHHHHHHHHhcCCcccccCCEEE
Confidence 99999731 1234556666655
No 117
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=89.20 E-value=2.6 Score=37.26 Aligned_cols=70 Identities=23% Similarity=0.232 Sum_probs=50.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----c-cccCCCCCccE
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVDL 158 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidip~v~~ 158 (493)
..++||.++|++.+.++++.+.+ .+.+..++++.+..+....+.. ..+|+|+|+- + ...+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 46899999999999999999875 3678889998876554444432 4679999962 1 22456677777
Q ss_pred EEe
Q 011124 159 IIH 161 (493)
Q Consensus 159 VI~ 161 (493)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 118
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=89.10 E-value=2.7 Score=37.80 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=51.1
Q ss_pred CcccHHHH-HHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEE
Q 011124 70 TATSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (493)
Q Consensus 70 ~~~~k~~~-l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (493)
...-|..+ +..++..+ ....++||.++|++.+.++++.+.. .+.+..++|+.+..++...+ . ..+|
T Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~i 134 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQI 134 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSE
T ss_pred CCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCE
Confidence 33456544 33344433 2345899999999999999888764 36788889987665544333 2 2679
Q ss_pred EEecccc------cccCCCCCccEEE
Q 011124 141 LVATDVA------ARGLDIPNVDLII 160 (493)
Q Consensus 141 LVaT~~~------~~Gidip~v~~VI 160 (493)
+|+|+-. ...+++..+++||
T Consensus 135 iv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 135 VVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp EEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEECHHHHHHHHHhCCcchhhCcEEE
Confidence 9999632 2345667778777
No 119
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=88.88 E-value=1.4 Score=40.29 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=44.2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----cccc-cCCCCC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~-Gidip~ 155 (493)
...++||.++|++.+.++++.+.+ .+.+..++++..... .++.+..+..+|+|+|+ .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 346899999999999999988874 256777788765433 33445556678999994 2222 356777
Q ss_pred ccEEEe
Q 011124 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887773
No 120
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=88.47 E-value=0.11 Score=29.76 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=15.1
Q ss_pred cccCCCCCcccCCCCC
Q 011124 478 CFNCGKSGHRASECPN 493 (493)
Q Consensus 478 c~~c~~~gh~~~~c~~ 493 (493)
|-+|-.-|||+.||++
T Consensus 6 Ce~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 6 CEICEMFGHWATNCND 21 (26)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred chHHHHhCcccccCCc
Confidence 9999999999999984
No 121
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=88.29 E-value=1.3 Score=39.21 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=49.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----cc-ccCCCCC
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPN 155 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~-~Gidip~ 155 (493)
..++||.++|++.+.++++.+.+ .+.+..++|+.+..+....+. ...+|+|+|+- +. .-+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 35899999999999999888764 356888999988765544332 35689999972 12 2345666
Q ss_pred ccEEE
Q 011124 156 VDLII 160 (493)
Q Consensus 156 v~~VI 160 (493)
+++||
T Consensus 147 ~~~lV 151 (206)
T 1vec_A 147 VQMIV 151 (206)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77666
No 122
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.44 E-value=2.3 Score=39.72 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=51.1
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----ccc--ccCCCC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA--RGLDIP 154 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~--~Gidip 154 (493)
...++||.+||++.++++++.+.+ .+.+..++|+.........+.. ..+|+|+|+ .+. ..+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC----CCCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999999999988875 3567788898876655544432 378999995 222 246677
Q ss_pred CccEEEe
Q 011124 155 NVDLIIH 161 (493)
Q Consensus 155 ~v~~VI~ 161 (493)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7887764
No 123
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=87.21 E-value=0.14 Score=39.28 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=3.9
Q ss_pred cccCCCCCcccCCCC
Q 011124 478 CFNCGKSGHRASECP 492 (493)
Q Consensus 478 c~~c~~~gh~~~~c~ 492 (493)
||+|+++||+++||+
T Consensus 27 cY~c~~~gh~~~~c~ 41 (83)
T 3nyb_B 27 AYILVDDNEKAKPKV 41 (83)
T ss_dssp CCCBC----------
T ss_pred ccccccCCccccccc
Confidence 777777777777775
No 124
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=86.87 E-value=1.6 Score=44.20 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=52.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----ccc-cCCCCCc
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~-Gidip~v 156 (493)
..++||.++|++.+.++++.+.+ .+.+..++|+.+..++...+.. ..+|+|+|+- +.+ -+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCcccccC
Confidence 35899999999999999988874 3568889999988766655543 5789999962 222 3567888
Q ss_pred cEEE
Q 011124 157 DLII 160 (493)
Q Consensus 157 ~~VI 160 (493)
++||
T Consensus 205 ~~lV 208 (434)
T 2db3_A 205 RFVV 208 (434)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 8877
No 125
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=85.96 E-value=0.89 Score=51.72 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=57.9
Q ss_pred HcCCCeEEEEeCChHHHHHHHHHHHc-----cC----ceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-ccccCC-C
Q 011124 85 YAKGGKTIVFTQTKRDADEVSLALTS-----II----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLD-I 153 (493)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~Gid-i 153 (493)
...+.++||.+||++.|.++++.+.. .+ .+..+||+.+..++.+.++.+++ .+|+|+|+- +..-+. +
T Consensus 96 ~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L 173 (1054)
T 1gku_B 96 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYREL 173 (1054)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTS
T ss_pred hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHh
Confidence 34567999999999999999988874 24 78899999999998888888887 889999972 111111 5
Q ss_pred CCccEEEe
Q 011124 154 PNVDLIIH 161 (493)
Q Consensus 154 p~v~~VI~ 161 (493)
..+++||.
T Consensus 174 ~~l~~lVi 181 (1054)
T 1gku_B 174 GHFDFIFV 181 (1054)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 57777773
No 126
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.96 E-value=2.9 Score=40.98 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=53.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc------cccCCCCC
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidip~ 155 (493)
..++||.|||+..++++++.+.+ .+.+..++|+.+..+....+. ++..+|+|+|.-. ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999999887764 467889999998776655443 3556899999622 23356778
Q ss_pred ccEEEe
Q 011124 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888773
No 127
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=85.04 E-value=1.6 Score=45.25 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc-----ccc-C-CCCC
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-----~~G-i-dip~ 155 (493)
..++||.+||+..+.++++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+-. ..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 57899999999999998888764 5789999999876654333322 46799999632 222 4 6777
Q ss_pred ccEEEe
Q 011124 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888773
No 128
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.02 E-value=3.4 Score=37.53 Aligned_cols=69 Identities=12% Similarity=0.220 Sum_probs=47.1
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc-----cc--cCCCC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLDIP 154 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-----~~--Gidip 154 (493)
...++||.++|++.+.++++.+.+ .+.+..+||+.+..+....+ ...+|+|+|+-. .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 356899999999999999988874 26788899987665544443 246899999621 11 24555
Q ss_pred CccEEE
Q 011124 155 NVDLII 160 (493)
Q Consensus 155 ~v~~VI 160 (493)
++++||
T Consensus 171 ~~~~lV 176 (236)
T 2pl3_A 171 DLQMLV 176 (236)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 666655
No 129
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.98 E-value=2.5 Score=41.93 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=51.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----c-cccCCCCCcc
Q 011124 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 157 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidip~v~ 157 (493)
.++||.+||++.+.++++.+.+ .+.+..+||+.+..+....+.. ..+|+|+|+- + ...+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4799999999999999988864 3678889999887766554432 4689999972 1 1235677788
Q ss_pred EEEe
Q 011124 158 LIIH 161 (493)
Q Consensus 158 ~VI~ 161 (493)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8773
No 130
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.13 E-value=3.5 Score=41.34 Aligned_cols=69 Identities=25% Similarity=0.383 Sum_probs=53.1
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHcc--C---ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc-c-----ccCCCCC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-A-----RGLDIPN 155 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~--~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-~-----~Gidip~ 155 (493)
...++||.||++..+.+.++.+.+. + .+..+||+....++..... ..+|+|+|.-. . .-+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5689999999999999999998863 3 7899999998887765554 35799999622 1 2356777
Q ss_pred ccEEE
Q 011124 156 VDLII 160 (493)
Q Consensus 156 v~~VI 160 (493)
+++||
T Consensus 126 ~~~vI 130 (494)
T 1wp9_A 126 VSLIV 130 (494)
T ss_dssp CSEEE
T ss_pred ceEEE
Confidence 88877
No 131
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=82.62 E-value=4.9 Score=34.03 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=35.7
Q ss_pred CeEEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeeccc----cceeEeec-CHHHHHHHHhhcC
Q 011124 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR----VQGAVFDL-PEEIAKELLNKQI 353 (493)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~----~~gs~fdv-p~~~a~~~~~~~~ 353 (493)
...+|+|..= ...++..+|..++..... |-.|.|..+.. ...+||+. ..+.|+++++.+.
T Consensus 38 ~~~~l~V~nl----p~~~t~~~l~~~F~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 38 KSCTLYVGNL----SFYTTEEQIYELFSKSGD-----IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp TCCEEEEESC----CTTCCHHHHHHHHGGGSC-----EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHhcCC-----eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3457777532 234788899888876654 55666654421 12367777 4556677776543
No 132
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=82.43 E-value=1.6 Score=45.08 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=49.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc-----ccc-C-CCCC
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-----~~G-i-dip~ 155 (493)
..++||.|||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+-. ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999999988888764 5789999999865544333322 46799999632 122 3 5667
Q ss_pred ccEEEe
Q 011124 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787773
No 133
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=82.32 E-value=1.5 Score=39.50 Aligned_cols=69 Identities=13% Similarity=0.256 Sum_probs=45.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----ccc-cCC
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLD 152 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~-Gid 152 (493)
..++||.++|++.+.++++.+.+ .+.+..++|+.+..+. .+.+. ...+|+|+|+- +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLN-VQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCS-SCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcC-CCCCEEEeCHHHHHHHHHcCCCC
Confidence 46899999999999999887763 3567788888754332 22332 35679999962 112 345
Q ss_pred CCCccEEE
Q 011124 153 IPNVDLII 160 (493)
Q Consensus 153 ip~v~~VI 160 (493)
+..+++||
T Consensus 148 ~~~~~~lV 155 (219)
T 1q0u_A 148 VHTAHILV 155 (219)
T ss_dssp GGGCCEEE
T ss_pred cCcceEEE
Confidence 55666655
No 134
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=81.89 E-value=2.5 Score=46.42 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=47.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----ccc-cC-CCCC
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GL-DIPN 155 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~-Gi-dip~ 155 (493)
..++||.|||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +.. -+ .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH----TCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC----CCCEEEEchHHHHHHHHhcccccccc
Confidence 67999999999999998887764 5789999999876654433322 4679999962 122 23 5667
Q ss_pred ccEEEe
Q 011124 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788773
No 135
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=81.76 E-value=2.8 Score=38.36 Aligned_cols=89 Identities=18% Similarity=0.291 Sum_probs=53.7
Q ss_pred CcccHHHH-HHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEE
Q 011124 70 TATSKRTI-LSDLITVYA----KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 70 ~~~~k~~~-l~~ll~~~~----~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (493)
...-|..+ +..++..+. ...++||.++|++.+.++++.+.+ .+.+..++++... ............+
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 151 (245)
T 3dkp_A 75 TGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVA---AKKFGPKSSKKFD 151 (245)
T ss_dssp TTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHH---HTTTSTTSCCCCC
T ss_pred CCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccH---HHHhhhhhcCCCC
Confidence 33455543 333444432 345799999999999999998875 3456666655322 1122233445678
Q ss_pred EEEeccc-----ccc---cCCCCCccEEEe
Q 011124 140 VLVATDV-----AAR---GLDIPNVDLIIH 161 (493)
Q Consensus 140 iLVaT~~-----~~~---Gidip~v~~VI~ 161 (493)
|+|+|+- +.. .+++.++.+||.
T Consensus 152 I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 152 ILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 9999952 112 366777777663
No 136
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=80.77 E-value=5 Score=38.14 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=50.8
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc------cccCCCCC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidip~ 155 (493)
...++||.+|++..++++++.+.+ .+.+..+|++.+..+....+. ..+|+|+|.-. ..-+++..
T Consensus 55 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 129 (337)
T 2z0m_A 55 LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-----NADIVVATPGRLLDLWSKGVIDLSS 129 (337)
T ss_dssp HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-----TCSEEEECHHHHHHHHHTTSCCGGG
T ss_pred hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 367999999999999999998874 357888999988776554443 26799999621 12345667
Q ss_pred ccEEE
Q 011124 156 VDLII 160 (493)
Q Consensus 156 v~~VI 160 (493)
+++||
T Consensus 130 ~~~iV 134 (337)
T 2z0m_A 130 FEIVI 134 (337)
T ss_dssp CSEEE
T ss_pred CcEEE
Confidence 77776
No 137
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=79.70 E-value=3.5 Score=40.35 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc------cccCCCCC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidip~ 155 (493)
...++||.||++..+.++++.+.+ .+.+..++|+.+..+....+. ..+|+|+|.-. ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 346999999999999999888764 367888999988776665554 35699999521 22355667
Q ss_pred ccEEEe
Q 011124 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 787773
No 138
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=78.24 E-value=17 Score=34.80 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=57.0
Q ss_pred cccHHHHH-HHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEE
Q 011124 71 ATSKRTIL-SDLITVYA--KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (493)
Q Consensus 71 ~~~k~~~l-~~ll~~~~--~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (493)
-.-|..+. ..++.... ...++||.+|++..++++++.+.+ .+.+..++++....+....+. ..+|+|
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv 128 (367)
T 1hv8_A 54 GSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVV 128 (367)
T ss_dssp SSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEE
T ss_pred CChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEE
Confidence 34555433 33333332 356899999999999999988874 356788899887766554443 357999
Q ss_pred ecccc------cccCCCCCccEEEe
Q 011124 143 ATDVA------ARGLDIPNVDLIIH 161 (493)
Q Consensus 143 aT~~~------~~Gidip~v~~VI~ 161 (493)
+|.-. ...+++.++++||.
T Consensus 129 ~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 129 GTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp ECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred ecHHHHHHHHHcCCcccccCCEEEE
Confidence 99631 12356677787773
No 139
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.16 E-value=6.8 Score=38.63 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=51.7
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----cccc-cCCCCC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~-Gidip~ 155 (493)
...++||.+||++.+.++++.+.. .+.+..++++....+....+.. ..+|+|+|+ .+.+ .++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCccHhh
Confidence 457999999999999999988864 3567888999887766555442 457999995 2222 466677
Q ss_pred ccEEE
Q 011124 156 VDLII 160 (493)
Q Consensus 156 v~~VI 160 (493)
+++||
T Consensus 180 ~~~vV 184 (410)
T 2j0s_A 180 IKMLV 184 (410)
T ss_dssp CCEEE
T ss_pred eeEEE
Confidence 88777
No 140
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=78.10 E-value=7.9 Score=37.94 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=50.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----cc-ccCCCCCc
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~-~Gidip~v 156 (493)
..++||.++|+..++++++.+.+ .+.+..++++....+....+ ....+|+|+|.- +. ...++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL----NETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHh----cCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 45899999999999999888874 36688889988766544332 236789999952 22 33567788
Q ss_pred cEEEe
Q 011124 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
++||.
T Consensus 165 ~~vIi 169 (400)
T 1s2m_A 165 SLFIM 169 (400)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88773
No 141
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=77.02 E-value=36 Score=34.26 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=34.2
Q ss_pred CeEEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeecc----ccceeEeec-CHHHHHHHHhhcC
Q 011124 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDL-PEEIAKELLNKQI 353 (493)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~----~~~gs~fdv-p~~~a~~~~~~~~ 353 (493)
...+|+|..= ...++..+|..++..... |-.|.|+.+. ....+||+. ..+.|..+++.+.
T Consensus 101 ~~~~lfV~nL----~~~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 101 AFKTLFVARV----NYDTTESKLRREFEVYGP-----IKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHHcCC-----eeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 3567887532 234788899888887654 4456665331 112366666 3445555665433
No 142
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=76.60 E-value=3.3 Score=39.54 Aligned_cols=85 Identities=7% Similarity=0.044 Sum_probs=53.3
Q ss_pred CcccHHHH-HHHHHHHHcC---CCeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEE
Q 011124 70 TATSKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 70 ~~~~k~~~-l~~ll~~~~~---~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (493)
...-|..+ +..++..+.. ..++||.+||++.|.+++..+.. .+.+..++++...... .....+
T Consensus 140 TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 212 (300)
T 3fmo_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQ 212 (300)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCS
T ss_pred CCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCC
Confidence 33455433 3344444322 23799999999999998887763 2456677776543211 123567
Q ss_pred EEEecccc------c-ccCCCCCccEEEe
Q 011124 140 VLVATDVA------A-RGLDIPNVDLIIH 161 (493)
Q Consensus 140 iLVaT~~~------~-~Gidip~v~~VI~ 161 (493)
|||+|+-. . ..+++..+.+||.
T Consensus 213 IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 213 IVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp EEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred EEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 99999732 1 3577888888874
No 143
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=76.13 E-value=5.1 Score=40.78 Aligned_cols=85 Identities=7% Similarity=0.020 Sum_probs=50.8
Q ss_pred CcccHHHH-HHHHHHHHcC---CCeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEE
Q 011124 70 TATSKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 70 ~~~~k~~~-l~~ll~~~~~---~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (493)
.-.-|..+ +..++..+.. ..++||.+||++.+.+++..+.+ .+.+....++.... .......+
T Consensus 140 TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 212 (479)
T 3fmp_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQ 212 (479)
T ss_dssp SSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCS
T ss_pred CCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCC
Confidence 33456544 3334433322 23899999999999998777653 24455555543211 11122457
Q ss_pred EEEeccccc-------ccCCCCCccEEEe
Q 011124 140 VLVATDVAA-------RGLDIPNVDLIIH 161 (493)
Q Consensus 140 iLVaT~~~~-------~Gidip~v~~VI~ 161 (493)
|+|+|+-.- ..+++.++.+||.
T Consensus 213 Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 213 IVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 999997432 3577788888774
No 144
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.41 E-value=4.3 Score=40.02 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=50.2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----cc-ccCCCCC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPN 155 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~-~Gidip~ 155 (493)
...++||.++|+..+.++++.+.. .+.+..++++...... ++.+..+..+|+|+|+- +. .-+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 456899999999999999988875 2456677777655444 33444467789999952 22 2356667
Q ss_pred ccEEEe
Q 011124 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 787773
No 145
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=73.06 E-value=0.9 Score=29.17 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=15.6
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
-|-+|---|||+.||++
T Consensus 22 YCd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccccccCcccccCCc
Confidence 39999999999999984
No 146
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=71.94 E-value=3.5 Score=46.17 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=45.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----ccc-cC-CCCC
Q 011124 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GL-DIPN 155 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~-Gi-dip~ 155 (493)
..++||.+||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +.. -+ .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCCEEEecHHHHHHHHHcCccccccC
Confidence 57899999999999998887764 5789999999866554333222 4679999962 122 23 5667
Q ss_pred ccEEE
Q 011124 156 VDLII 160 (493)
Q Consensus 156 v~~VI 160 (493)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78777
No 147
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=71.52 E-value=6.6 Score=35.87 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=35.8
Q ss_pred CeEEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeecc-c---cceeEeec-CHHHHHHHHhhcC
Q 011124 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD-R---VQGAVFDL-PEEIAKELLNKQI 353 (493)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~-~---~~gs~fdv-p~~~a~~~~~~~~ 353 (493)
...+|+|..= ...++..+|..++..... ..|-.|.|..+. + ...+||+. ..+.|+++++.+.
T Consensus 67 ~~~~lfVgnL----~~~~te~~L~~~F~~~G~---~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln 133 (229)
T 3q2s_C 67 KRIALYIGNL----TWWTTDEDLTEAVHSLGV---NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 133 (229)
T ss_dssp --CEEEEESC----CTTCCHHHHHHHHHTTTC---CCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred CccEEEEeCC----CCCCCHHHHHHHHHHHCC---cceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 3457787532 234788899888876541 136667776552 1 22367766 3456677776543
No 148
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=70.94 E-value=1.2 Score=44.08 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=4.6
Q ss_pred CHHHHHHHH
Q 011124 256 GTDALAAAL 264 (493)
Q Consensus 256 ~~~~l~aal 264 (493)
.+..||+|.
T Consensus 192 ~Ps~IAaAA 200 (358)
T 2pk2_A 192 TPPVVACVC 200 (358)
T ss_dssp CHHHHTTTT
T ss_pred CHHHHHHHH
Confidence 455555543
No 149
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=69.40 E-value=8.2 Score=42.24 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=51.1
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-c-----c-------
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-A-----A------- 148 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~-----~------- 148 (493)
.+..++|.|+|+..|.++++.+.. ++.+.++.|+++.++|.... ..+|+|+|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 457899999999999998887763 47899999999988776553 3589999972 1 1
Q ss_pred ccCCCCCccEEE
Q 011124 149 RGLDIPNVDLII 160 (493)
Q Consensus 149 ~Gidip~v~~VI 160 (493)
.-++...+.++|
T Consensus 197 ~~l~lr~~~~lV 208 (844)
T 1tf5_A 197 EQMVQRPLHFAV 208 (844)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhcccCCCEEE
Confidence 135566777766
No 150
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=69.16 E-value=5.5 Score=42.66 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=48.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----cccc-C-CCCCc
Q 011124 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPNV 156 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~G-i-dip~v 156 (493)
.++||.+||+..+.+.++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH----TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc----CCCEEEECHHHHHHHHhcCcccccccc
Confidence 7899999999999988888764 4778899998865433222221 4689999972 2222 3 56778
Q ss_pred cEEEe
Q 011124 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88773
No 151
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=68.70 E-value=9 Score=41.91 Aligned_cols=69 Identities=7% Similarity=-0.050 Sum_probs=51.4
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc------ccc-----
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARG----- 150 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~G----- 150 (493)
.+.+++|.|+|+..|.++++.+.. ++.+.++.|+++.++|.... ..+|+|+|+-- ...
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 457899999999999988887763 47899999999987666544 36899999732 222
Q ss_pred --CCCCCccEEEe
Q 011124 151 --LDIPNVDLIIH 161 (493)
Q Consensus 151 --idip~v~~VI~ 161 (493)
+....+.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 45567777663
No 152
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=68.02 E-value=3.8 Score=36.25 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCeEEEEeCChHHHHH-HHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 88 GGKTIVFTQTKRDADE-VSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~-l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
..++||+|+++..+++ +.+.+.. .+.+..++++.....+...+. ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5799999999999888 5555543 467888888764332221111 1467899986
No 153
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=67.50 E-value=5.4 Score=43.10 Aligned_cols=67 Identities=22% Similarity=0.370 Sum_probs=48.6
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----ccccCC-CCCc
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARGLD-IPNV 156 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~Gid-ip~v 156 (493)
.+.++||.+|++..+.++++.+++ ++.+..+||+.+...+. .+..+|+|+|+- +..... +.++
T Consensus 67 ~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~ 139 (720)
T 2zj8_A 67 QGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_dssp HCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGGE
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhcC
Confidence 468999999999999999998863 46889999987654431 136789999972 222222 5677
Q ss_pred cEEE
Q 011124 157 DLII 160 (493)
Q Consensus 157 ~~VI 160 (493)
++||
T Consensus 140 ~~vI 143 (720)
T 2zj8_A 140 KILV 143 (720)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 7777
No 154
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=66.35 E-value=6.9 Score=44.62 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=50.4
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----ccccc-CCC
Q 011124 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDI 153 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idi 153 (493)
++..+..+.++||.+||+..+.+.+..|.. .-.+..++|+++ .+...+|+|+|+ .+.++ ..+
T Consensus 220 i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l 288 (1108)
T 3l9o_A 220 IAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVM 288 (1108)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHH
T ss_pred HHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccc
Confidence 344445678999999999999999999986 446888999876 234678999994 33333 235
Q ss_pred CCccEEE
Q 011124 154 PNVDLII 160 (493)
Q Consensus 154 p~v~~VI 160 (493)
.++.+||
T Consensus 289 ~~l~lVV 295 (1108)
T 3l9o_A 289 REVAWVI 295 (1108)
T ss_dssp HHEEEEE
T ss_pred ccCCEEE
Confidence 6677776
No 155
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=64.47 E-value=6.2 Score=40.44 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----CceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-cccc--CCCCCccEE
Q 011124 88 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARG--LDIPNVDLI 159 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~G--idip~v~~V 159 (493)
..++||.|||+..+++.++.+.+. ..+..+|++.+..++ ..+..+|+|+|.- +..- ..+.++.+|
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~li 229 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEE
Confidence 349999999999999999999753 357888998766553 3456789999963 2222 335566776
Q ss_pred Ee
Q 011124 160 IH 161 (493)
Q Consensus 160 I~ 161 (493)
|.
T Consensus 230 Ii 231 (510)
T 2oca_A 230 MN 231 (510)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 156
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=63.25 E-value=13 Score=40.96 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=45.3
Q ss_pred HHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
+..+ .+..++|.|+|+..|.+.++.+.. ++.+.++.|+++.++|.... ..+|+++|+
T Consensus 147 l~aL-~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 147 LNAL-AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHHT-TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHH-hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3443 457899999999999988887763 47899999999988776655 257999997
No 157
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=62.00 E-value=6.1 Score=42.63 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=55.0
Q ss_pred CcccHHHHH-HHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEe
Q 011124 70 TATSKRTIL-SDLITVYA-KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (493)
Q Consensus 70 ~~~~k~~~l-~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (493)
...-|.... ..+++.+. .+.++||.+|++..+.+++..++. ++.+..++|+....++ .+ ...+|+|+
T Consensus 55 TGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~ 127 (715)
T 2va8_A 55 TGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIIT 127 (715)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEE
T ss_pred CCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEE
Confidence 334554443 33333332 568999999999999999998853 4678889998765442 12 26789999
Q ss_pred cc-----cccccCC-CCCccEEE
Q 011124 144 TD-----VAARGLD-IPNVDLII 160 (493)
Q Consensus 144 T~-----~~~~Gid-ip~v~~VI 160 (493)
|+ .+..... +.++++||
T Consensus 128 Tpe~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 128 TYEKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp CHHHHHHHHHHCCGGGGGEEEEE
T ss_pred cHHHHHHHHhCChhHhhccCEEE
Confidence 97 2222322 56778777
No 158
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=61.42 E-value=13 Score=41.15 Aligned_cols=54 Identities=13% Similarity=0.044 Sum_probs=44.5
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
.+.+++|.++|+..|.+.++.+.. ++.+..+.|+++.++|..... .+|+|+|+.
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay~------~DIvyGTpg 177 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYL------ADVTYVTNS 177 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHHT------SSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHcC------CCEEEECch
Confidence 457899999999999998888763 478999999999887777653 689999973
No 159
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=60.48 E-value=7.7 Score=30.59 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=33.1
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCC
Q 011124 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (493)
.+..+.+..++||||.+-..+...+..|.. ++.+..|.|++.
T Consensus 48 ~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 48 KWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 333445667999999998888888999985 678889989864
No 160
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=59.56 E-value=2.4 Score=27.34 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=15.6
Q ss_pred ccccCCCCCcccCCCCC
Q 011124 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
-|-+|---|||..||++
T Consensus 22 YCe~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccceecccccccCCc
Confidence 39999999999999984
No 161
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=59.41 E-value=4 Score=42.51 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=47.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc---------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccc-----c--cCC
Q 011124 89 GKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-----R--GLD 152 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~-----~--Gid 152 (493)
.++||.+||++.+.++++.+.. .+.+..++++.+..... +.+.....+|||+|+-.- + ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHH---HHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 3899999999999999888864 13467777877654433 333334678999997321 1 234
Q ss_pred CCCccEEE
Q 011124 153 IPNVDLII 160 (493)
Q Consensus 153 ip~v~~VI 160 (493)
+..+.+||
T Consensus 224 ~~~~~~lV 231 (563)
T 3i5x_A 224 FRFVDYKV 231 (563)
T ss_dssp CTTCCEEE
T ss_pred cccceEEE
Confidence 66788776
No 162
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=58.73 E-value=4.2 Score=42.71 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=47.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc---------CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc-----cc--cCC
Q 011124 89 GKTIVFTQTKRDADEVSLALTSI---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLD 152 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~---------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-----~~--Gid 152 (493)
.++||.+||++.+.++++.+.+. +.+..++++....... +.+.....+|||+|+-. .+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHH---HHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 48999999999999998888641 4466777776654433 33333457899999632 11 345
Q ss_pred CCCccEEE
Q 011124 153 IPNVDLII 160 (493)
Q Consensus 153 ip~v~~VI 160 (493)
+..+++||
T Consensus 173 ~~~~~~lV 180 (579)
T 3sqw_A 173 FRFVDYKV 180 (579)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 66788776
No 163
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=58.19 E-value=3.2 Score=44.55 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=46.1
Q ss_pred CeEEEEeCChHHHHHH-HHHHHc-c---CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc-c-----------ccC
Q 011124 89 GKTIVFTQTKRDADEV-SLALTS-I---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-A-----------RGL 151 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l-~~~L~~-~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-~-----------~Gi 151 (493)
.++||.+|++..+.++ ++.|.+ . +.+..+||+.+..++...+. +..+|||+|+-. . ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999999998 888775 2 78999999986554433332 357899999622 1 235
Q ss_pred CCCCccEEE
Q 011124 152 DIPNVDLII 160 (493)
Q Consensus 152 dip~v~~VI 160 (493)
.+..+++||
T Consensus 133 ~~~~~~lvV 141 (699)
T 4gl2_A 133 QLSDFSLII 141 (699)
T ss_dssp CGGGCSEEE
T ss_pred ecccCcEEE
Confidence 667788877
No 164
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=58.16 E-value=67 Score=27.43 Aligned_cols=114 Identities=12% Similarity=0.196 Sum_probs=62.7
Q ss_pred ChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHH
Q 011124 31 PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT 109 (493)
Q Consensus 31 p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~ 109 (493)
+.+|.+++..++.+...+....... ..+. ........+-...+.+.+... .....+.|.|++...+..+.+.|.
T Consensus 8 t~~Il~~An~li~~~~~~~~~~~~G----~~p~-~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~ 82 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVTAFDRQG----DLPN-VVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALK 82 (174)
T ss_dssp CHHHHHHHHTTSCC--------CCC----CCCE-EEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCcccCCCCCC----CCCE-EEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHH
Confidence 5677777777775433222111111 1111 122222223333333333322 234678899999999999999998
Q ss_pred c-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCC
Q 011124 110 S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (493)
Q Consensus 110 ~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~ 164 (493)
. ++++..+..+-. .|. -.|.|.|--.+.|+-+ ++||.+++
T Consensus 83 ~~gi~~~~l~~~~~---------~~~---~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 83 ARGEQVTLIQTENQ---------RLA---PGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TTTCCEEECSSCC----------CCC---SSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred HcCCcceeeccccc---------ccC---CCeEEEEccccCCcCC---CEEEEecC
Confidence 6 577766655421 122 2588999999999987 45555443
No 165
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=57.64 E-value=11 Score=40.62 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=55.1
Q ss_pred cHHHHH-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc--
Q 011124 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-- 145 (493)
Q Consensus 73 ~k~~~l-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-- 145 (493)
-|..+. ..+++.+..+.++||.+|++..+.++++.++. ++.+..++|+....++ ..+..+|+|+|+
T Consensus 52 GKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~ 124 (702)
T 2p6r_A 52 GKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEK 124 (702)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHH
Confidence 454332 33444444568999999999999999998853 4678889998755432 123678999996
Q ss_pred ---cccccCC-CCCccEEEe
Q 011124 146 ---VAARGLD-IPNVDLIIH 161 (493)
Q Consensus 146 ---~~~~Gid-ip~v~~VI~ 161 (493)
.+..... +.++++||.
T Consensus 125 l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 125 ADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp HHHHHHTTCSGGGGCCEEEE
T ss_pred HHHHHHcChhHHhhcCEEEE
Confidence 2333333 667888773
No 166
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=56.50 E-value=14 Score=29.78 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=30.7
Q ss_pred HHHHcCC-CeEEEEe-CChHHHHHHHHHHHc-cCceEEEeCCCC
Q 011124 82 ITVYAKG-GKTIVFT-QTKRDADEVSLALTS-IIASEALHGDIS 122 (493)
Q Consensus 82 l~~~~~~-~~~IVF~-~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (493)
+..+.+. .++|||| .+-..+..++..|.. ++.+..|.|++.
T Consensus 82 ~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 82 AAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3334456 7999999 576777788888875 678899999874
No 167
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=55.02 E-value=29 Score=25.58 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=29.8
Q ss_pred HHHHHHH--cCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCC
Q 011124 79 SDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (493)
Q Consensus 79 ~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~ 121 (493)
...+..+ .+..+++|||.+-..+...+..|.. ++. +..+ |++
T Consensus 30 ~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 30 KERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred HHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 3344444 4567899999998888888888875 664 5555 664
No 168
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=54.42 E-value=15 Score=28.70 Aligned_cols=44 Identities=7% Similarity=0.030 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011124 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
...+..+.+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 49 ~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 49 GAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 33444455678999999998888888888885 664 788888874
No 169
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=51.21 E-value=15 Score=28.60 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011124 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
..+.+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 47 ~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 47 SSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4455667899999998888888888885 664 778888863
No 170
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=51.19 E-value=75 Score=33.77 Aligned_cols=83 Identities=23% Similarity=0.306 Sum_probs=57.9
Q ss_pred EEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccC---ceEEEe--------------------CCCC-
Q 011124 67 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEALH--------------------GDIS- 122 (493)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~lh--------------------g~~~- 122 (493)
.-+....|.-++..++... +.++||.+++...|.+++..|...+ .|..+- ...+
T Consensus 34 ~g~tgs~kt~~~a~~~~~~--~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~ 111 (664)
T 1c4o_A 34 LGATGTGKTVTMAKVIEAL--GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASI 111 (664)
T ss_dssp EECTTSCHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSC
T ss_pred EcCCCcHHHHHHHHHHHHh--CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhccc
Confidence 3456667877777777654 4689999999999999999998643 233222 3332
Q ss_pred ----HHHHHHHHhcccCCCEEEEEecccccccC
Q 011124 123 ----QHQRERTLNGFRQGKFTVLVATDVAARGL 151 (493)
Q Consensus 123 ----~~~r~~~~~~F~~g~~~iLVaT~~~~~Gi 151 (493)
..+|..++..+..+.-.|+|+|-.+..++
T Consensus 112 ~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 112 NPEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp CHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 55788888888766666888876544553
No 171
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=50.54 E-value=80 Score=23.94 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=39.9
Q ss_pred eEEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeeccccceeEeec-CHHHHHHHHhhcCC---CCCceee
Q 011124 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL-PEEIAKELLNKQIP---PGNTISK 361 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~gs~fdv-p~~~a~~~~~~~~~---~~~~i~~ 361 (493)
..+|+|..= ...++..+|..++..... |-.+.+..++ +||+. ..+.|+++++.+.. .+..+.+
T Consensus 11 ~~~l~V~nl----~~~~t~~~l~~~F~~~G~-----i~~v~~~~~~----afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 11 VKVLFVRNL----ANTVTEEILEKAFSQFGK-----LERVKKLKDY----AFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCEEEECC----CTTCCHHHHHHHHHHHSC-----EEEEEECSSC----EEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCEEEEeCC----CCCCCHHHHHHHHHhcCC-----EEEEEEECCE----EEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 456777432 234788899988887654 4456776665 67776 45566666664332 3444444
Q ss_pred eccCC
Q 011124 362 ITKLP 366 (493)
Q Consensus 362 ~~~lP 366 (493)
--..|
T Consensus 78 ~~a~~ 82 (103)
T 2dgu_A 78 VFAKP 82 (103)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 43333
No 172
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=50.26 E-value=23 Score=39.82 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=52.3
Q ss_pred ccHHHHH-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc----
Q 011124 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 145 (493)
Q Consensus 72 ~~k~~~l-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~---- 145 (493)
.-|..+. ..++..+..+.++||.+||+..+.+.+..|.+ .-.+..++|+.+.. ...+|+|+|+
T Consensus 112 SGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tpe~L~ 180 (1010)
T 2xgj_A 112 AGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTTEILR 180 (1010)
T ss_dssp SCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEHHHHH
T ss_pred CChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcHHHHH
Confidence 3454332 23334444678999999999999999999886 33678889986532 2467999986
Q ss_pred -ccccc-CCCCCccEEE
Q 011124 146 -VAARG-LDIPNVDLII 160 (493)
Q Consensus 146 -~~~~G-idip~v~~VI 160 (493)
.+.++ ..+.++.+||
T Consensus 181 ~~L~~~~~~l~~l~lVV 197 (1010)
T 2xgj_A 181 SMLYRGSEVMREVAWVI 197 (1010)
T ss_dssp HHHHHTCTTGGGEEEEE
T ss_pred HHHHcCcchhhcCCEEE
Confidence 22233 4556777777
No 173
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=49.09 E-value=28 Score=37.12 Aligned_cols=64 Identities=19% Similarity=0.091 Sum_probs=47.4
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc--cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc---ccccCCCCCccEEEe
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---AARGLDIPNVDLIIH 161 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~---~~~Gidip~v~~VI~ 161 (493)
.+.++||.++|++.|.++++.+.+ ...+...+++.. .....+|+|+|+- ....+++.++++||.
T Consensus 256 ~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 256 QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 456999999999999999988864 455666666643 3556789999973 234566777888875
No 174
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=48.46 E-value=47 Score=29.98 Aligned_cols=61 Identities=18% Similarity=0.089 Sum_probs=42.8
Q ss_pred CcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 70 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 70 ~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.-.-|..+...++... ..++||+++++..++++++.+.+ .+. +..++++.. ...+|+|+|.
T Consensus 117 tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp SSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 3345665554444443 57999999999999999998886 445 777887753 1346888884
No 175
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=46.71 E-value=12 Score=30.58 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=30.6
Q ss_pred HHcCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011124 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
.+.+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 78 ~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 78 HFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred hCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 344567999999998888888888875 664 888999874
No 176
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=46.46 E-value=12 Score=30.27 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=31.6
Q ss_pred HHHHHHcCCCeEEEEeCChHH--HHHHHHHHHc-cCceEEEeCCCC
Q 011124 80 DLITVYAKGGKTIVFTQTKRD--ADEVSLALTS-IIASEALHGDIS 122 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~--~~~l~~~L~~-~~~~~~lhg~~~ 122 (493)
..+..+.+..++||||.+-.. +..++..|.. ++.+..|.|++.
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 333344566789999998766 7778888875 788888888863
No 177
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=46.39 E-value=1.1e+02 Score=24.13 Aligned_cols=128 Identities=12% Similarity=0.216 Sum_probs=70.7
Q ss_pred EEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccc--cc-----CCCCCccEEEeC
Q 011124 91 TIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA--RG-----LDIPNVDLIIHY 162 (493)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~--~G-----idip~v~~VI~~ 162 (493)
.+||....+...++...+++ +..+..|+++.....|.+.++.|....+++--..|--. .. --.|.+++|+..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46778777777778777774 88899999999999999999999876655544333110 00 014666665543
Q ss_pred CC--CCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCC-CceeeCCCCHHHHHH
Q 011124 163 EL--PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC-KFEFVSPPVVEDVLE 223 (493)
Q Consensus 163 ~~--p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~-~~~~~~~p~~~~~~~ 223 (493)
.. -.-+.+|+..+-- +.-.++++|...+...-+...+.+.. ..........+++++
T Consensus 85 ttddkewikdfieeake-----rgvevfvvynnkdddrrkeaqqefrsdgvdvrtvsdkeelie 143 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAKE-----RGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDKEELIE 143 (162)
T ss_dssp ECCCHHHHHHHHHHHHH-----TTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEESSHHHHHH
T ss_pred ecCcHHHHHHHHHHHHh-----cCcEEEEEecCCCchhHHHHHHHhhhcCceeeecCCHHHHHH
Confidence 22 1224455544321 11245555555444433333333332 233334444454443
No 178
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=45.56 E-value=1e+02 Score=31.33 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=73.1
Q ss_pred EEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccC--ceEEEeC-------CCC-----HHHHHHH
Q 011124 64 LYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--ASEALHG-------DIS-----QHQRERT 129 (493)
Q Consensus 64 ~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~--~~~~lhg-------~~~-----~~~r~~~ 129 (493)
+...-+....|.-++..+++.. +.++||.|++...|.+++..|...+ .+..+-. ..+ ..+|..+
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~~--~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~ 94 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHHS--SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHH
Confidence 3444456667777777777653 5789999999999999999998533 2333211 111 2468888
Q ss_pred HhcccCCCEEEEEecccccccCCCC-----CccEEEeCCCCCChhHHHHHh
Q 011124 130 LNGFRQGKFTVLVATDVAARGLDIP-----NVDLIIHYELPNDPETFVHRS 175 (493)
Q Consensus 130 ~~~F~~g~~~iLVaT~~~~~Gidip-----~v~~VI~~~~p~~~~~y~qr~ 175 (493)
+.++.+++..|+|+|-.+....=.| .-.+.+..+-..+.+.+.++.
T Consensus 95 l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 95 LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp HHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 9888877777888875444443333 234566677777888777664
No 179
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=45.47 E-value=26 Score=35.20 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 72 ~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.-|..+...++... ..++||.||++..+.+.++.+.+ .+. +..+||+... ..+|+|+|.
T Consensus 119 sGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 119 SGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp SCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 35655444444443 57999999999999999999987 566 8889988642 356899985
No 180
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=44.76 E-value=46 Score=32.31 Aligned_cols=84 Identities=8% Similarity=0.043 Sum_probs=51.2
Q ss_pred CcccHHHH-HHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEE
Q 011124 70 TATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 70 ~~~~k~~~-l~~ll~~~~---~~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (493)
.-.-|..+ +..++..+. ...++||.+||+..+.++++.+.+ .+.+...+++.... .......+
T Consensus 73 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 145 (412)
T 3fht_A 73 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQ 145 (412)
T ss_dssp TTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC-------TTCCCCCS
T ss_pred CCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh-------hhhcCCCC
Confidence 33456543 333444432 234899999999999999887764 24566666654321 11233567
Q ss_pred EEEeccccc-------ccCCCCCccEEE
Q 011124 140 VLVATDVAA-------RGLDIPNVDLII 160 (493)
Q Consensus 140 iLVaT~~~~-------~Gidip~v~~VI 160 (493)
|+|+|+-.- ..+++.++++||
T Consensus 146 ivv~T~~~l~~~~~~~~~~~~~~~~~iV 173 (412)
T 3fht_A 146 IVIGTPGTVLDWCSKLKFIDPKKIKVFV 173 (412)
T ss_dssp EEEECHHHHHHHHTTSCSSCGGGCCEEE
T ss_pred EEEECchHHHHHHHhcCCcChhhCcEEE
Confidence 999996321 345667788877
No 181
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=44.04 E-value=32 Score=38.67 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=39.8
Q ss_pred HHcCCCeEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 84 VYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
......++||.+|++..+.+++..|.+ .+.+..+||+.+ .+...+|+|+|+
T Consensus 78 ~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tp 131 (997)
T 4a4z_A 78 AHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTT 131 (997)
T ss_dssp HHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEH
T ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECH
Confidence 334567899999999999999999986 357889999874 234567888885
No 182
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=42.57 E-value=64 Score=30.87 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=45.6
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc------cccCCCCC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidip~ 155 (493)
...++||.+||+..++++++.+.+ .+.+..++++... .......+|+|+|.-. ...+++.+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE--------KNKQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSC--------TTSCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchh--------hhccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 356899999999999999998875 2456666665321 1122356799999632 33456778
Q ss_pred ccEEEe
Q 011124 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+++||.
T Consensus 146 ~~~iIi 151 (395)
T 3pey_A 146 IKIFVL 151 (395)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888773
No 183
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=42.41 E-value=12 Score=29.29 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=30.4
Q ss_pred HHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCC
Q 011124 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (493)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~ 121 (493)
.+.+..+++|||.+-..+...+..|.+ ++.+..|.|++
T Consensus 52 ~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 52 SFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 345678999999998888888888885 78887787775
No 184
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=41.05 E-value=23 Score=27.17 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=30.5
Q ss_pred HcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCC
Q 011124 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (493)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~ 121 (493)
+.+..++||||.+-..+...+..|.. ++.+..|.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 34567999999998888889999985 67888888875
No 185
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=40.43 E-value=20 Score=27.61 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=30.2
Q ss_pred HcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCC
Q 011124 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (493)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~ 121 (493)
+.+..++||||.+-..+...+..|.. ++.+..|.|++
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 34567899999998888888888885 67888888875
No 186
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=40.34 E-value=2e+02 Score=30.38 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=71.2
Q ss_pred EEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccC---ceEEEe--------------------CCC--
Q 011124 67 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEALH--------------------GDI-- 121 (493)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~lh--------------------g~~-- 121 (493)
.-+....|.-++..++... +.++||.+++...|.+++..|...+ .|..+- -..
T Consensus 38 ~g~~gs~k~~~~a~~~~~~--~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~ 115 (661)
T 2d7d_A 38 LGATGTGKTFTVSNLIKEV--NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASI 115 (661)
T ss_dssp EECTTSCHHHHHHHHHHHH--CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEE
T ss_pred ECcCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhccc
Confidence 3456667877777777654 4689999999999999999998643 233322 111
Q ss_pred C---HHHHHHHHhcccCCCEEEEEecccccccCCCCC----ccEEEeCCCCCChhHHHHHh
Q 011124 122 S---QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRS 175 (493)
Q Consensus 122 ~---~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~----v~~VI~~~~p~~~~~y~qr~ 175 (493)
+ ..+|..++.++..++-.|+|+|-.+-.++-.|+ -.+.+..+-..+.+.++++.
T Consensus 116 ~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L 176 (661)
T 2d7d_A 116 NDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKL 176 (661)
T ss_dssp CHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHH
Confidence 1 568888998887666568888765545543322 23455666666777776654
No 187
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=40.19 E-value=32 Score=31.93 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 88 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
..++||.++|+..+++.++.+.+. ..+..++++....+ -.....+|+|+|.
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 349999999999999999988753 24566666653322 1124567999996
No 188
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=39.72 E-value=32 Score=25.96 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.3
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCC
Q 011124 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (493)
.+ .+++|||.+-..+...+..|.. ++.+..|.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 7899999998888888888885 777778888863
No 189
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=36.40 E-value=58 Score=25.33 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.7
Q ss_pred HcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCC
Q 011124 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (493)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (493)
..+..++||||.+-..+..++..|.. ++....|.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34667899999998888888888885 665577888863
No 190
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=36.03 E-value=51 Score=33.62 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=39.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHccC-----ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc------cccCCCCCc
Q 011124 88 GGKTIVFTQTKRDADEVSLALTSII-----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~~-----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidip~v 156 (493)
..++||.++++..+.++++.+.+.. .+....++. .... .....+|+|+|.-. ...+++..+
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS---VPKG-----AKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCc---cccc-----ccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 3489999999999999999887532 222222221 1111 11256799999632 224567788
Q ss_pred cEEEe
Q 011124 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
++||.
T Consensus 261 ~lIIi 265 (508)
T 3fho_A 261 KVFVL 265 (508)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88773
No 191
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.93 E-value=1.4e+02 Score=26.93 Aligned_cols=133 Identities=11% Similarity=0.048 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCC--CceEEeccccccccc--cceEEEEEEcCcccHHHHHHHH
Q 011124 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDN--PLNIDLVGNQDEKLA--EGIKLYAISTTATSKRTILSDL 81 (493)
Q Consensus 6 F~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~--~~~i~~~~~~~~~~~--~~i~~~~~~~~~~~k~~~l~~l 81 (493)
+.+-.+.++........+..+.+++.+.+. .+++++.. ...|-..+.....+. .++....+.....+-+.+|..
T Consensus 24 L~~~~~~i~~e~~~~~~I~vi~~~le~av~-~a~~~~~~~~~dVIISRGgta~~Lr~~~~iPVV~I~vs~~Dil~aL~~- 101 (225)
T 2pju_A 24 LFELFRDISLEFDHLANITPIQLGFEKAVT-YIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQFLAK- 101 (225)
T ss_dssp HHHHHHHHHTTTTTTCEEEEECCCHHHHHH-HHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhCCCceEEEecCcHHHHHH-HHHHHHhcCCCeEEEeCChHHHHHHhhCCCCEEEecCCHHHHHHHHHH-
Confidence 344455555554444566666777755444 44444442 333321111111111 234444444444344433333
Q ss_pred HHHHcCCC--eEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 82 ITVYAKGG--KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 82 l~~~~~~~--~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
...... -++-|-+....++.+.+.|.-.+....++. .++-+.++++.+...++++|...
T Consensus 102 --a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~---~ee~~~~i~~l~~~G~~vVVG~~ 162 (225)
T 2pju_A 102 --AGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYIT---EEDARGQINELKANGTEAVVGAG 162 (225)
T ss_dssp --TTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESS---HHHHHHHHHHHHHTTCCEEEESH
T ss_pred --HHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCC---HHHHHHHHHHHHHCCCCEEECCH
Confidence 222223 345566778888888888876555555543 45666677777766678888743
No 192
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=33.19 E-value=51 Score=27.27 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=27.7
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cC-ceEEEeCCCC
Q 011124 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (493)
.+..++||||.+-..+..++..|.. ++ .+..|.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3567899999987777788888875 66 5888889873
No 193
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=33.15 E-value=1.3e+02 Score=21.99 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=35.7
Q ss_pred cceEEEEEEcCcccHHHHHHHHHHHHcC----CCeEEEEeCChHHHHHHHHHHHc
Q 011124 60 EGIKLYAISTTATSKRTILSDLITVYAK----GGKTIVFTQTKRDADEVSLALTS 110 (493)
Q Consensus 60 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~----~~~~IVF~~t~~~~~~l~~~L~~ 110 (493)
.+..+.|.....++...+|..+++.+.+ .-++-|-..|+++++.++..|.+
T Consensus 15 knfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailik 69 (106)
T 1qys_A 15 KNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIK 69 (106)
T ss_dssp CEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHH
Confidence 4556666666666667777777766533 22566888999999999887753
No 194
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=31.56 E-value=58 Score=26.38 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=29.1
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011124 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
.+..++||||.+=..+...+..|.. ++. +..|.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3567999999998777778888875 674 788888874
No 195
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=29.86 E-value=43 Score=27.21 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=29.9
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011124 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
.+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4567999999998888888888875 664 888988863
No 196
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=28.16 E-value=1.5e+02 Score=26.20 Aligned_cols=75 Identities=7% Similarity=-0.029 Sum_probs=45.2
Q ss_pred cCcccHHHHHHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHccCc--eEEEeC--------CCCHHHHHHHHhcccCC
Q 011124 69 TTATSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTSIIA--SEALHG--------DISQHQRERTLNGFRQG 136 (493)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~--~~~~~IVF~~t~~~~~~l~~~L~~~~~--~~~lhg--------~~~~~~r~~~~~~F~~g 136 (493)
....+..+.|...++... .-.+++|...+=+++..+++.+ .++. +..+|- .|+++.|++..+.
T Consensus 23 ~G~eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~-~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~---- 97 (201)
T 1vp8_A 23 PGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA-EGLEVVVVTYHTGFVREGENTMPPEVEEELRKR---- 97 (201)
T ss_dssp CSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC-TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHT----
T ss_pred CCcccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh-cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhC----
Confidence 333444444444443322 2368888888888898888877 4333 334443 3666666655544
Q ss_pred CEEEEEeccccc
Q 011124 137 KFTVLVATDVAA 148 (493)
Q Consensus 137 ~~~iLVaT~~~~ 148 (493)
.++|+-+|-+++
T Consensus 98 G~~V~t~tH~ls 109 (201)
T 1vp8_A 98 GAKIVRQSHILS 109 (201)
T ss_dssp TCEEEECCCTTT
T ss_pred CCEEEEEecccc
Confidence 788888887653
No 197
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=27.95 E-value=43 Score=27.69 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=29.5
Q ss_pred cCCCeEEEEeCCh--HHHHHHHHHHHc-cCceEEEeCCCC
Q 011124 86 AKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t~--~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (493)
.+..++||||.+- ..+..++..|.. ++.+..|.|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 4567899999987 577778888875 778889999964
No 198
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=26.27 E-value=1.2e+02 Score=32.96 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=38.7
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhccc--------CCCEEEEEecc
Q 011124 86 AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFR--------QGKFTVLVATD 145 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~--------~g~~~iLVaT~ 145 (493)
....++||.|| ...+.+....+.+ .+.+..+||...........+.+. ....+|+|+|-
T Consensus 284 ~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 RQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp SCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 44678999999 5566677777765 467888898865544433333322 24567899885
No 199
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=26.26 E-value=1.6e+02 Score=25.64 Aligned_cols=123 Identities=11% Similarity=0.125 Sum_probs=72.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc----cccccCCCCCccEEEeCC
Q 011124 89 GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIHYE 163 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~----~~~~Gidip~v~~VI~~~ 163 (493)
.+++++++.....+.+.+.+.+ ...+..+.+++.... ...+.+ +...+|+||-- .+..-+++| || +
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v--~~a~~~-~~~~dVIISRGgta~~lr~~~~iP----VV--~ 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTRAS--KIAFGL-QDEVDAIISRGATSDYIKKSVSIP----SI--S 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHH--HHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC----EE--E
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHH--HHHHHh-cCCCeEEEECChHHHHHHHhCCCC----EE--E
Confidence 5778888888777755554443 345666777764332 233334 45678998843 444445555 22 2
Q ss_pred CCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHHHH
Q 011124 164 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (493)
Q Consensus 164 ~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~ 222 (493)
+|.+.-++++-+=++-+.+. -.+++-+.. -...++.+...++.++......+.+++.
T Consensus 76 I~~s~~Dil~al~~a~~~~~-kIavvg~~~-~~~~~~~~~~ll~~~i~~~~~~~~~e~~ 132 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN-ELALIAYKH-SIVDKHEIEAMLGVKIKEFLFSSEDEIT 132 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS-EEEEEEESS-CSSCHHHHHHHHTCEEEEEEECSGGGHH
T ss_pred EcCCHhHHHHHHHHHHhhCC-cEEEEeCcc-hhhHHHHHHHHhCCceEEEEeCCHHHHH
Confidence 34567777776666555433 233333322 2234667888888888887777766654
No 200
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=25.66 E-value=48 Score=27.34 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=29.7
Q ss_pred HcCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011124 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
+.+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 34567899999998888888888875 664 778888863
No 201
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=25.30 E-value=2.5e+02 Score=24.86 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=31.1
Q ss_pred CcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc
Q 011124 70 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (493)
Q Consensus 70 ~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~ 110 (493)
.......++..+.+.+.+++.+++++++....+.+.+.|.+
T Consensus 169 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 209 (255)
T 3mb5_A 169 DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLRE 209 (255)
T ss_dssp CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 33344556777777777788888999999988888888874
No 202
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=24.61 E-value=53 Score=26.85 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=30.4
Q ss_pred HcCCCeEEEEeCChHHHHHHHHHHHc-cC-ceEEEeCCCC
Q 011124 85 YAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (493)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (493)
+.+..++||||.+-..+...+..|.. ++ .+..|.|++.
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 34667999999998888888888875 67 5888989863
No 203
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=24.42 E-value=1.3e+02 Score=25.23 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=47.5
Q ss_pred HHHHHHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHcc----CceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccc
Q 011124 74 KRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (493)
Q Consensus 74 k~~~l~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (493)
+....++|+.. +..+.+++|.|.+.+.++.|-+.|-.. |-...+.++-+ .....|+|+++-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~------------~~~~PV~L~~~~~~ 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP------------RGGAPVEIAWPQKR 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS------------TTCCSEEEECTTSC
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC------------CCCCCEEEeCCCCC
Confidence 55666666643 456789999999999999999998642 21222222211 12456999875321
Q ss_pred ccCCCCCccEEEeCCC
Q 011124 149 RGLDIPNVDLIIHYEL 164 (493)
Q Consensus 149 ~Gidip~v~~VI~~~~ 164 (493)
.-+.-+++||.+.
T Consensus 92 ---~~~~~~vLinL~~ 104 (150)
T 3sxu_A 92 ---SSSRRDILISLRT 104 (150)
T ss_dssp ---CCSCCSEEEECCS
T ss_pred ---CCCcCCEEEECCC
Confidence 1234568999774
No 204
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=23.94 E-value=57 Score=26.48 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=28.9
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 457899999998888888888886 664 778888863
No 205
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=23.58 E-value=1.6e+02 Score=23.70 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=38.1
Q ss_pred eEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 90 KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
+.+|.+..+.++..|.+.+.....+...+|.++++..+.+.+..+ ...|+|-||
T Consensus 5 ~~vIVVEGk~D~~~L~~~~~~~~~iI~t~Gsi~~~~l~~I~~~~~--~r~VIi~TD 58 (119)
T 2fcj_A 5 EKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELE--GYDVYLLAD 58 (119)
T ss_dssp CEEEEESSHHHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHTT--TSEEEEECC
T ss_pred CeEEEEechHHHHHHHHhcCCCCCEEEeCCccCHHHHHHHHHHhc--CCCEEEEEC
Confidence 568889999999888776533345777888888877666666654 345667666
No 206
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=22.21 E-value=4.3e+02 Score=23.74 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=27.8
Q ss_pred HHHHHHc-cCceEEEeCCCCHHHHHHHHhc-ccC-CCEEEEEecc-c---------ccccCCCCC-ccEEEeCC
Q 011124 104 VSLALTS-IIASEALHGDISQHQRERTLNG-FRQ-GKFTVLVATD-V---------AARGLDIPN-VDLIIHYE 163 (493)
Q Consensus 104 l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~-F~~-g~~~iLVaT~-~---------~~~Gidip~-v~~VI~~~ 163 (493)
+.+.|.+ ++.+......-..+.-...++. ++. ..++.++|++ . .+.|+.+|+ --.||=+|
T Consensus 152 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D 225 (297)
T 3rot_A 152 IKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFD 225 (297)
T ss_dssp HHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEEC
T ss_pred HHHHHHhcCCeEEEeecCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEeC
Confidence 3444443 4555555544444444444444 322 3455566543 2 235666655 33344444
No 207
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=22.08 E-value=92 Score=27.53 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=43.7
Q ss_pred cCcccHHHHHHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHccCceEEEeC--------CCCHHHHHHHHhcccCCCE
Q 011124 69 TTATSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTSIIASEALHG--------DISQHQRERTLNGFRQGKF 138 (493)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~--~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg--------~~~~~~r~~~~~~F~~g~~ 138 (493)
....+..+.|...++... .-.+++|...+=+.+..+++.+...+-+..+|- .|+++.|++..+. .+
T Consensus 31 ~G~eNT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~~~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~----G~ 106 (206)
T 1t57_A 31 PGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLER----GV 106 (206)
T ss_dssp CSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCSEEEEECCCTTSSSTTCCSSCHHHHHHHHHH----TC
T ss_pred CCcccHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHccCCEEEEeCcCCCCCCCCCcCCHHHHHHHHhC----CC
Confidence 333444444444443322 236788888888888887776622222333443 4667776666555 67
Q ss_pred EEEEecccc
Q 011124 139 TVLVATDVA 147 (493)
Q Consensus 139 ~iLVaT~~~ 147 (493)
+|+-+|-++
T Consensus 107 ~V~t~tH~l 115 (206)
T 1t57_A 107 NVYAGSHAL 115 (206)
T ss_dssp EEECCSCTT
T ss_pred EEEEeeccc
Confidence 788777665
No 208
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.77 E-value=4.5e+02 Score=23.42 Aligned_cols=126 Identities=8% Similarity=0.086 Sum_probs=73.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc---CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc----cccccCCCCCccEEEe
Q 011124 89 GKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIH 161 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~----~~~~Gidip~v~~VI~ 161 (493)
.++++.++.....+.+.+.+.+. ..+..+.+.+..... .+.+.+..+..+|+||-- .+..-+++| ||
T Consensus 13 ~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~-~a~~~~~~~~~dVIISRGgta~~Lr~~~~iP----VV- 86 (225)
T 2pju_A 13 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVT-YIRKKLANERCDAIIAAGSNGAYLKSRLSVP----VI- 86 (225)
T ss_dssp CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHH-HHHHHTTTSCCSEEEEEHHHHHHHHTTCSSC----EE-
T ss_pred CCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHH-HHHHHHhcCCCeEEEeCChHHHHHHhhCCCC----EE-
Confidence 46666677766666444444331 345556677643322 222334444578999843 444445555 22
Q ss_pred CCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHHHHH
Q 011124 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (493)
Q Consensus 162 ~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~ 223 (493)
+++.+.-++++-+=++-+.+. -.+++-+.. -...++.+...++.++......+.+++.+
T Consensus 87 -~I~vs~~Dil~aL~~a~~~~~-kIavVg~~~-~~~~~~~i~~ll~~~i~~~~~~~~ee~~~ 145 (225)
T 2pju_A 87 -LIKPSGYDVLQFLAKAGKLTS-SIGVVTYQE-TIPALVAFQKTFNLRLDQRSYITEEDARG 145 (225)
T ss_dssp -EECCCHHHHHHHHHHTTCTTS-CEEEEEESS-CCHHHHHHHHHHTCCEEEEEESSHHHHHH
T ss_pred -EecCCHHHHHHHHHHHHhhCC-cEEEEeCch-hhhHHHHHHHHhCCceEEEEeCCHHHHHH
Confidence 235677788887777766543 244444433 33457788899999999888777776543
No 209
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=20.28 E-value=95 Score=28.63 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=32.1
Q ss_pred HHHHHHH--HcCCCeEEEEeCChHHHHHHHHHHH-c-cC-ceEEEeCCC
Q 011124 78 LSDLITV--YAKGGKTIVFTQTKRDADEVSLALT-S-II-ASEALHGDI 121 (493)
Q Consensus 78 l~~ll~~--~~~~~~~IVF~~t~~~~~~l~~~L~-~-~~-~~~~lhg~~ 121 (493)
|...+.. +.+..++||||.+-..+..++..|. . ++ .+..|.|++
T Consensus 221 l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 221 LRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 3344443 3456789999999888888888887 5 66 588888886
No 210
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=20.15 E-value=2.3e+02 Score=25.84 Aligned_cols=58 Identities=10% Similarity=0.144 Sum_probs=40.3
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHH-HHHHhcccC--CCEEEEEec
Q 011124 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQR-ERTLNGFRQ--GKFTVLVAT 144 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r-~~~~~~F~~--g~~~iLVaT 144 (493)
.+.++++.-.+.+.++++++.|+. +-.+..+..|++..+. +..++...+ |.++|||..
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNN 91 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNN 91 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 456777777888888999998875 6678889999875533 333333221 678888864
No 211
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=20.01 E-value=2.9e+02 Score=24.01 Aligned_cols=130 Identities=10% Similarity=0.112 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEec-cccccccc--cceEEEEEEcCcccHHHHHHHHH
Q 011124 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV-GNQDEKLA--EGIKLYAISTTATSKRTILSDLI 82 (493)
Q Consensus 6 F~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~-~~~~~~~~--~~i~~~~~~~~~~~k~~~l~~ll 82 (493)
+.+-+++++.... .++-...+++.+.+ ..++++ .....|-+. +.....+. .++....+.....+-+.+|..
T Consensus 16 l~~~~~~i~~e~~--~~i~i~~~~l~~~v-~~a~~~-~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Dil~al~~-- 89 (196)
T 2q5c_A 16 LLNLFPKLALEKN--FIPITKTASLTRAS-KIAFGL-QDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDTMRAVYN-- 89 (196)
T ss_dssp HHHHHHHHHHHHT--CEEEEEECCHHHHH-HHHHHH-TTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHH--
T ss_pred HHHHHHHHHhhhC--CceEEEECCHHHHH-HHHHHh-cCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHHHHHHHH--
Confidence 4555566666543 35666777775544 445555 433222221 11111111 234444555544444444433
Q ss_pred HHHcCCCe--EEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011124 83 TVYAKGGK--TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 83 ~~~~~~~~--~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
......+ ++=|-+....++.+.+.|.-.+....++.. ++-+..+++.+...++++|...
T Consensus 90 -a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~---~e~~~~i~~l~~~G~~vvVG~~ 150 (196)
T 2q5c_A 90 -AKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSE---DEITTLISKVKTENIKIVVSGK 150 (196)
T ss_dssp -HGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSG---GGHHHHHHHHHHTTCCEEEECH
T ss_pred -HHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCH---HHHHHHHHHHHHCCCeEEECCH
Confidence 3222334 455667777888899998766666666654 3334566666666677777743
Done!