BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011125
(493 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49432|QRT3_ARATH Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1
Length = 481
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/466 (49%), Positives = 301/466 (64%), Gaps = 43/466 (9%)
Query: 24 SISEENMPARLLAKLQVAQNAPCPSASSIKNNGRVFYPIGYGADPTGANESSDAILQALN 83
S+ N+PA + Q P P RV+ I YGADPTG +S+DAIL+A+
Sbjct: 50 SLVRRNLPALVSPPPTPPQAVPGP---------RVYQVISYGADPTGKLDSTDAILKAME 100
Query: 84 DAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFP-PGVGNVVVQGGTLRASDTFP 142
+AF+ + L+ G+ DLGG ID QGG+Y IS+P+RFP G GN+++ GGTLRAS+ FP
Sbjct: 101 EAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTLRASNDFP 160
Query: 143 SDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYY--EDITFRDVLFDSGFRG 200
DR+LIEL KD++++ Y E IT RD+L D +RG
Sbjct: 161 VDRYLIEL-------------------------KDESSKLQYIFEYITLRDLLIDCNYRG 195
Query: 201 GGIFVIDSARIRINNCFFLHF-TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGT 259
G I VI+S R I+NC+ F T GILV+ GHET+I + FLGQ T GGD GE+ FSGT
Sbjct: 196 GAIAVINSLRTSIDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGT 255
Query: 260 AIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTR 319
AI+L NDNA+TD IFSA IGV++ GQAN+++ VHCYNKAT FGG GI ++L R
Sbjct: 256 AINLMGNDNAVTDTVIFSARIGVMVSGQANLLSGVHCYNKATGFGGTGIYLRLPGLTQNR 315
Query: 320 IDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVP 379
I N YLDYTGIV EDPVQ+ ++ FFLGDA I+LKSI G I G++IV+NMF+GS V
Sbjct: 316 IVNSYLDYTGIVAEDPVQLQISGTFFLGDAFILLKSIAGYIRGVSIVDNMFSGS-GHGVQ 374
Query: 380 IIKLDGE---FSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRIS 436
I++LD F ++ QVV++RN+VNGM KST + SV GNGT W DF+P+L+FP+ I+
Sbjct: 375 IVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDGNGTSWTVDFNPVLLFPDLIN 434
Query: 437 HFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQ 482
H QY++ V +F + + NVSDN VVVE++ VT V V V+Q
Sbjct: 435 HVQYTL-VASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQ 479
>sp|A9L2F4|MAO1_SHEB9 NAD-dependent malic enzyme OS=Shewanella baltica (strain OS195)
GN=maeA PE=3 SV=1
Length = 562
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGSGPLLPKLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+ +SK I F VG V V QG TL SD W+P ++ KRT
Sbjct: 513 -----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWSPEYRRYKRT 560
>sp|A3D0E1|MAO1_SHEB5 NAD-dependent malic enzyme OS=Shewanella baltica (strain OS155 /
ATCC BAA-1091) GN=maeA PE=3 SV=1
Length = 562
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGSGPLLPKLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+ +SK I F VG V V QG TL SD W+P ++ KRT
Sbjct: 513 -----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWSPEYRRYKRT 560
>sp|A0KT69|MAO1_SHESA NAD-dependent malic enzyme OS=Shewanella sp. (strain ANA-3) GN=maeA
PE=3 SV=1
Length = 562
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAINGSGPLLPKLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+ +SK I F VG V + QG +L ASD W P ++ KRT
Sbjct: 513 -----HSVSKHIAF--AVGKVAIEQGLSLPASDELLMQSIEDNFWKPEYRRYKRT 560
>sp|A6WSH0|MAO1_SHEB8 NAD-dependent malic enzyme OS=Shewanella baltica (strain OS185)
GN=maeA PE=3 SV=1
Length = 562
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGSGPLLPKLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+ +SK I F VG V V QG TL SD W+P ++ KRT
Sbjct: 513 -----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWSPEYRRYKRT 560
>sp|B8E835|MAO1_SHEB2 NAD-dependent malic enzyme OS=Shewanella baltica (strain OS223)
GN=maeA PE=3 SV=1
Length = 562
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGSGPLLPKLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+ +SK I F VG V V QG TL SD W+P ++ KRT
Sbjct: 513 -----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWSPEYRRYKRT 560
>sp|Q0HYM7|MAO1_SHESR NAD-dependent malic enzyme OS=Shewanella sp. (strain MR-7) GN=maeA
PE=3 SV=1
Length = 562
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAINGSGPLLPKLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+ +SK I F VG V + QG +L ASD W P ++ KRT
Sbjct: 513 -----HSVSKHIAF--AVGKVAIEQGLSLPASDELLMQSIEDNFWKPEYRRYKRT 560
>sp|Q0HFA9|MAO1_SHESM NAD-dependent malic enzyme OS=Shewanella sp. (strain MR-4) GN=maeA
PE=3 SV=1
Length = 562
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAINGSGPLLPKLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+ +SK I F VG V + QG +L ASD W P ++ KRT
Sbjct: 513 -----HSVSKHIAF--AVGKVAIEQGLSLPASDELLMQSIEDNFWKPEYRRYKRT 560
>sp|Q8EAP2|MAO1_SHEON NAD-dependent malic enzyme OS=Shewanella oneidensis (strain MR-1)
GN=maeA PE=3 SV=1
Length = 562
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAINGSGPLLPKLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+ +SK I F VG V + QG +L ASD W P ++ KRT
Sbjct: 513 -----HSVSKHIAF--AVGKVAIEQGLSLPASDELLMQSIEDNFWKPEYRRYKRT 560
>sp|A1RNF8|MAO1_SHESW NAD-dependent malic enzyme OS=Shewanella sp. (strain W3-18-1)
GN=maeA PE=3 SV=1
Length = 562
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGTGPLLPKLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+ +SK I F VG V V QG TL SD W P ++ KRT
Sbjct: 513 -----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWKPEYRRYKRT 560
>sp|A4Y3I1|MAO1_SHEPC NAD-dependent malic enzyme OS=Shewanella putrefaciens (strain CN-32
/ ATCC BAA-453) GN=maeA PE=3 SV=1
Length = 562
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGTGPLLPKLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+ +SK I F VG V V QG TL SD W P ++ KRT
Sbjct: 513 -----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWKPEYRRYKRT 560
>sp|B8CQT6|MAO1_SHEPW NAD-dependent malic enzyme OS=Shewanella piezotolerans (strain WP3
/ JCM 13877) GN=maeA PE=3 SV=1
Length = 562
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 20/115 (17%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIID 107
NN +F IG G GA SDA+L A + A S L LLP ++D+
Sbjct: 459 NNSYIFPGIGLGVLAAGAERVSDAMLMASSRALAECSPLSINGEGSLLPQLEDI------ 512
Query: 108 FQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+K+SK I F V V + +G L SD S W ++ KRT
Sbjct: 513 -----HKVSKHIAF--AVAKVAIEEGHALPTSDELLSQAIEDNFWTAEYRRYKRT 560
>sp|A1S8W7|MAO1_SHEAM NAD-dependent malic enzyme OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=maeA PE=3 SV=1
Length = 562
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNY 113
NN +F IG G GAN S+ +L A + A E P KD G ++ +
Sbjct: 459 NNSYIFPGIGLGVLACGANRVSNEMLMASSRAL-----AECSPLAKDGSGPLLPPLEEIH 513
Query: 114 KISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+SK I F V V + QG L +D W P ++ KRT
Sbjct: 514 DVSKHIAF--AVAKVAIEQGHALDTTDELLMQSIEANFWYPEYRRYKRT 560
>sp|A3QH80|MAO1_SHELP NAD-dependent malic enzyme OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=maeA PE=3 SV=1
Length = 562
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 54 NNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNY 113
NN +F IG G +GA S+ +L A + A E P KD G ++ +
Sbjct: 459 NNSYIFPGIGLGVLASGAKRVSNEMLMASSRAL-----AECSPLAKDGEGSLLPALEDIH 513
Query: 114 KISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 161
+SK I F VG V + QG L ASD W ++ KRT
Sbjct: 514 SVSKHIAF--AVGKVAIEQGHALPASDELLMQAIEDNFWTAEYRRYKRT 560
>sp|B8FA39|TRPF_DESAA N-(5'-phosphoribosyl)anthranilate isomerase OS=Desulfatibacillum
alkenivorans (strain AK-01) GN=trpF PE=3 SV=1
Length = 218
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 57 RVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGV 104
R+ + G DP S AIL A+ DA +V SG+E PGVKD+ V
Sbjct: 153 RMPLALAGGLDPENV---SQAILDAMPDALDVSSGVEASPGVKDMDKV 197
>sp|A8F8F7|TRPB_THELT Tryptophan synthase beta chain OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=trpB PE=3 SV=1
Length = 422
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 16 PLLLQETTSISEENMPARLLAKLQVAQNAPCPSASSIKN----NGRVFYPIGYGADPTGA 71
PL+ QE T E +P +L + V + P A+ ++ R++Y GA PTG+
Sbjct: 51 PLIEQEVTDKREIPIPEPVLEEYAVFRPTPLFRATYLEEFLQTPARIYYKYE-GASPTGS 109
Query: 72 NESSDAILQALNDAFNVQSGLELL 95
++++ A+ QA +N SG E L
Sbjct: 110 HKTNTALAQAY---YNKISGTERL 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,150,395
Number of Sequences: 539616
Number of extensions: 7890028
Number of successful extensions: 17513
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 17495
Number of HSP's gapped (non-prelim): 17
length of query: 493
length of database: 191,569,459
effective HSP length: 122
effective length of query: 371
effective length of database: 125,736,307
effective search space: 46648169897
effective search space used: 46648169897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)