Query 011125
Match_columns 493
No_of_seqs 140 out of 155
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03808 RR_plus_rpt_1 twin-a 100.0 1E-28 2.2E-33 258.9 21.1 272 55-390 34-325 (455)
2 PLN02218 polygalacturonase ADP 100.0 3.2E-26 7E-31 241.0 32.1 252 55-335 64-345 (431)
3 PLN02793 Probable polygalactur 100.0 2.7E-26 5.9E-31 242.3 29.0 250 55-336 49-331 (443)
4 PLN02155 polygalacturonase 99.9 1.3E-25 2.8E-30 234.2 25.5 254 55-343 24-308 (394)
5 PLN03003 Probable polygalactur 99.9 1.3E-24 2.7E-29 230.1 23.2 250 55-344 20-301 (456)
6 PLN03010 polygalacturonase 99.9 1E-23 2.2E-28 220.9 28.2 244 55-343 43-319 (409)
7 PLN02188 polygalacturonase/gly 99.9 1.6E-23 3.4E-28 219.2 25.7 223 55-311 33-286 (404)
8 PF12708 Pectate_lyase_3: Pect 99.8 9.8E-19 2.1E-23 162.4 20.2 206 58-323 1-220 (225)
9 COG5434 PGU1 Endopygalactoruna 99.6 1.8E-13 3.8E-18 148.1 20.7 170 55-242 79-306 (542)
10 PF00295 Glyco_hydro_28: Glyco 99.4 2E-11 4.4E-16 124.4 19.1 213 102-335 5-245 (326)
11 TIGR03805 beta_helix_1 paralle 99.1 8.2E-09 1.8E-13 105.4 19.7 30 78-122 1-30 (314)
12 PF13229 Beta_helix: Right han 98.8 2E-08 4.3E-13 87.7 9.4 150 202-370 2-158 (158)
13 PF13229 Beta_helix: Right han 98.3 2.9E-06 6.4E-11 74.0 8.3 131 224-373 1-137 (158)
14 PF05048 NosD: Periplasmic cop 98.3 2.9E-05 6.2E-10 74.8 15.3 152 198-373 11-167 (236)
15 TIGR03805 beta_helix_1 paralle 98.1 0.00025 5.3E-09 72.9 17.8 165 207-384 61-253 (314)
16 PF14592 Chondroitinas_B: Chon 97.9 0.00056 1.2E-08 73.2 17.2 178 207-384 129-374 (425)
17 PF05048 NosD: Periplasmic cop 97.8 0.00044 9.5E-09 66.7 14.0 134 224-381 14-152 (236)
18 PF01696 Adeno_E1B_55K: Adenov 97.5 0.012 2.7E-07 62.5 19.5 186 56-309 41-232 (386)
19 TIGR03808 RR_plus_rpt_1 twin-a 97.4 0.0029 6.2E-08 68.3 13.6 170 197-384 236-427 (455)
20 PF03718 Glyco_hydro_49: Glyco 97.2 0.025 5.5E-07 62.4 19.4 138 211-371 358-513 (582)
21 COG3420 NosD Nitrous oxidase a 97.1 0.035 7.5E-07 58.5 18.2 152 198-373 148-307 (408)
22 PF07602 DUF1565: Protein of u 97.1 0.043 9.3E-07 55.3 17.8 34 76-124 16-53 (246)
23 PLN02665 pectinesterase family 97.1 0.086 1.9E-06 56.0 20.7 198 68-326 74-296 (366)
24 PLN02793 Probable polygalactur 96.6 0.041 9E-07 59.5 14.3 140 182-346 206-362 (443)
25 PLN02188 polygalacturonase/gly 96.5 0.055 1.2E-06 57.9 14.5 104 182-300 184-306 (404)
26 PLN02480 Probable pectinestera 96.4 0.23 5E-06 52.3 17.7 195 68-326 54-275 (343)
27 PLN02155 polygalacturonase 96.3 0.19 4E-06 53.8 17.2 115 182-311 174-306 (394)
28 PLN03010 polygalacturonase 96.2 0.29 6.3E-06 52.6 17.8 140 182-346 186-342 (409)
29 PLN02682 pectinesterase family 96.2 0.53 1.1E-05 50.2 19.4 135 75-242 82-227 (369)
30 PF00295 Glyco_hydro_28: Glyco 96.2 0.37 7.9E-06 49.8 17.8 115 182-311 121-252 (326)
31 PRK10531 acyl-CoA thioesterase 96.1 1.2 2.6E-05 48.4 21.8 51 67-130 87-137 (422)
32 PLN02634 probable pectinestera 95.9 0.7 1.5E-05 49.1 18.4 52 68-133 62-114 (359)
33 PLN02176 putative pectinestera 95.8 0.77 1.7E-05 48.5 18.5 195 67-326 44-269 (340)
34 PLN02773 pectinesterase 95.7 0.88 1.9E-05 47.6 18.0 203 68-326 11-238 (317)
35 PF01095 Pectinesterase: Pecti 95.4 0.96 2.1E-05 46.7 17.0 198 75-326 12-234 (298)
36 PLN02170 probable pectinestera 95.4 1.2 2.6E-05 49.7 18.6 203 67-326 230-450 (529)
37 PLN02218 polygalacturonase ADP 95.1 0.63 1.4E-05 50.4 15.3 140 207-373 199-345 (431)
38 PLN02916 pectinesterase family 94.9 2 4.4E-05 47.5 18.6 207 68-326 193-424 (502)
39 PLN03003 Probable polygalactur 94.5 1.1 2.3E-05 49.1 15.3 145 202-373 140-291 (456)
40 PF12218 End_N_terminal: N ter 94.3 0.053 1.1E-06 44.4 3.6 36 66-116 1-36 (67)
41 PLN02708 Probable pectinestera 93.8 3.2 6.9E-05 46.5 17.4 205 69-326 248-485 (553)
42 PLN02201 probable pectinestera 93.7 2.4 5.1E-05 47.3 16.1 52 68-133 212-264 (520)
43 PLN03043 Probable pectinestera 93.6 4.6 0.0001 45.1 18.2 207 68-326 229-460 (538)
44 PLN02497 probable pectinestera 93.6 4.8 0.0001 42.5 17.3 195 68-327 38-263 (331)
45 PF00544 Pec_lyase_C: Pectate 93.4 0.56 1.2E-05 45.4 9.5 132 280-417 37-198 (200)
46 PLN02488 probable pectinestera 93.2 3.5 7.6E-05 45.9 16.2 46 75-133 209-255 (509)
47 PLN02432 putative pectinestera 93.0 3.3 7.1E-05 43.0 14.9 194 68-326 17-228 (293)
48 PLN02713 Probable pectinestera 92.5 4.2 9.1E-05 45.8 15.9 55 68-133 256-311 (566)
49 PLN02933 Probable pectinestera 92.2 5.4 0.00012 44.6 16.2 52 68-133 224-276 (530)
50 PLN02416 probable pectinestera 92.1 3.9 8.5E-05 45.7 15.1 46 75-133 242-288 (541)
51 PLN02301 pectinesterase/pectin 92.0 10 0.00022 42.6 18.1 51 69-133 243-294 (548)
52 PLN02995 Probable pectinestera 91.8 5.2 0.00011 44.8 15.6 53 69-133 230-283 (539)
53 PLN02197 pectinesterase 91.8 5.3 0.00011 45.2 15.7 51 69-133 282-333 (588)
54 PLN02745 Putative pectinestera 91.6 6.2 0.00013 44.7 16.0 51 69-133 292-343 (596)
55 PF12708 Pectate_lyase_3: Pect 91.4 1.8 3.9E-05 40.3 10.0 100 224-347 113-219 (225)
56 PLN02506 putative pectinestera 91.2 5.2 0.00011 44.8 14.9 51 69-133 239-290 (537)
57 PLN02468 putative pectinestera 91.1 5.5 0.00012 44.8 15.0 51 69-133 265-316 (565)
58 PLN02313 Pectinesterase/pectin 91.0 4.9 0.00011 45.4 14.6 51 69-133 282-333 (587)
59 PLN02217 probable pectinestera 91.0 5.5 0.00012 45.7 15.1 203 69-326 257-484 (670)
60 PLN02484 probable pectinestera 90.7 7.5 0.00016 44.0 15.6 52 69-133 279-331 (587)
61 PLN02671 pectinesterase 90.6 11 0.00024 40.2 16.0 48 68-129 65-112 (359)
62 COG5434 PGU1 Endopygalactoruna 90.5 1.1 2.4E-05 50.0 8.9 111 181-301 266-395 (542)
63 PLN02314 pectinesterase 90.5 8.2 0.00018 43.6 15.7 46 75-133 290-336 (586)
64 PRK10123 wcaM putative colanic 90.4 14 0.00031 38.9 16.1 89 211-303 179-284 (464)
65 PLN02990 Probable pectinestera 90.1 7.6 0.00017 43.8 15.0 51 69-133 266-317 (572)
66 PLN02304 probable pectinestera 89.6 13 0.00028 40.1 15.6 53 67-133 80-133 (379)
67 PF00544 Pec_lyase_C: Pectate 88.9 9.6 0.00021 36.9 13.0 48 199-246 74-130 (200)
68 PF01696 Adeno_E1B_55K: Adenov 86.1 12 0.00027 40.3 12.8 114 211-373 123-240 (386)
69 COG3420 NosD Nitrous oxidase a 86.0 27 0.00059 37.6 14.9 21 222-242 119-139 (408)
70 smart00656 Amb_all Amb_all dom 84.9 14 0.00029 35.7 11.5 132 280-417 32-184 (190)
71 COG4677 PemB Pectin methyleste 84.1 13 0.00028 39.7 11.6 161 61-245 84-267 (405)
72 PF07602 DUF1565: Protein of u 80.6 4.4 9.6E-05 41.1 6.6 33 198-231 112-144 (246)
73 smart00656 Amb_all Amb_all dom 80.5 57 0.0012 31.4 14.5 44 200-243 31-80 (190)
74 PF14592 Chondroitinas_B: Chon 79.4 12 0.00027 40.8 9.8 90 260-349 238-364 (425)
75 COG3866 PelB Pectate lyase [Ca 77.7 52 0.0011 35.0 13.3 58 188-245 104-167 (345)
76 TIGR03804 para_beta_helix para 75.4 3.7 8.1E-05 29.9 3.3 40 202-242 1-40 (44)
77 COG3866 PelB Pectate lyase [Ca 69.9 51 0.0011 35.0 11.0 151 280-437 117-288 (345)
78 TIGR03804 para_beta_helix para 63.3 14 0.0003 26.9 4.1 33 267-299 9-42 (44)
79 PF03718 Glyco_hydro_49: Glyco 63.0 37 0.00079 38.5 8.9 33 211-245 382-414 (582)
80 PF09251 PhageP22-tail: Salmon 54.1 2.8E+02 0.006 31.1 13.4 87 267-363 312-413 (549)
81 smart00722 CASH Domain present 32.5 3.1E+02 0.0068 23.3 9.9 37 327-363 93-133 (146)
82 PF05223 MecA_N: NTF2-like N-t 31.9 33 0.00073 30.1 2.1 23 412-434 92-114 (118)
83 PF11666 DUF2933: Protein of u 28.1 38 0.00082 27.2 1.6 13 6-18 23-35 (55)
84 PF12541 DUF3737: Protein of u 27.2 7.5E+02 0.016 26.0 13.1 51 183-242 116-166 (277)
85 PF10880 DUF2673: Protein of u 23.0 61 0.0013 26.5 1.9 42 1-42 1-54 (65)
86 smart00710 PbH1 Parallel beta- 21.8 1E+02 0.0022 18.6 2.4 21 210-230 3-23 (26)
87 PF12541 DUF3737: Protein of u 21.3 9.7E+02 0.021 25.2 14.3 54 182-242 36-89 (277)
No 1
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.96 E-value=1e-28 Score=258.95 Aligned_cols=272 Identities=21% Similarity=0.306 Sum_probs=215.0
Q ss_pred CCeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCcceeEeCCe
Q 011125 55 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGT 134 (493)
Q Consensus 55 ~~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~i~~GT 134 (493)
..|.+|+++|||+|||++|+|+|||+||++|. .++.+|.||+|+|+. +||+|++.. .+...+|.
T Consensus 34 p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa--------------~gG~tV~Lp~G~Y~~-G~L~L~spl-tL~G~~gA 97 (455)
T TIGR03808 34 STLGRDATQYGVRPNSPDDQTRALQRAIDEAA--------------RAQTPLALPPGVYRT-GPLRLPSGA-QLIGVRGA 97 (455)
T ss_pred CccCCCHHHcCcCCCCcchHHHHHHHHHHHhh--------------cCCCEEEECCCceec-ccEEECCCc-EEEecCCc
Confidence 34569999999999999999999999999763 134689999999987 799999643 34444454
Q ss_pred EEecCCCCCCcceEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeecc-----eeecceEEeeee
Q 011125 135 LRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSG-----FRGGGIFVIDSA 209 (493)
Q Consensus 135 LkAs~~Fpgd~~lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n-----~~ggGI~v~nSq 209 (493)
.+ ..|.++..+|..- .-++++++.+.+|.. .+-.+|.+..++
T Consensus 98 t~--~vIdG~~~lIiai-------------------------------~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~ 144 (455)
T TIGR03808 98 TR--LVFTGGPSLLSSE-------------------------------GADGIGLSGLTLDGGGIPLPQRRGLIHCQGGR 144 (455)
T ss_pred EE--EEEcCCceEEEEe-------------------------------cCCCeEEEeeEEEeCCCcccCCCCEEEEccCC
Confidence 21 0223333333211 123334444444442 355789998899
Q ss_pred cEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCceeeeEEEeecceeEEEe----
Q 011125 210 RIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLR---- 285 (493)
Q Consensus 210 ~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~~ItD~~i~sa~~GI~v~---- 285 (493)
++.|.+|++.+..-.||+++++. ..|+++.|.... +.+.+.+...++.+++| .|.++ ...||++.
T Consensus 145 ~v~Iedn~L~gsg~FGI~L~~~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N--~I~g~----RD~gi~i~r~~~ 213 (455)
T TIGR03808 145 DVRITDCEITGSGGNGIWLETVS-GDISGNTITQIA----VTAIVSFDALGLIVARN--TIIGA----NDNGIEILRSAI 213 (455)
T ss_pred ceEEEeeEEEcCCcceEEEEcCc-ceEecceEeccc----cceEEEeccCCCEEECC--EEEcc----CCCCeEEEEeee
Confidence 99999999987777999999998 888888886554 33466666677777776 77777 77788886
Q ss_pred -cceeEEEeeEEecccccccceeEEEe-----ccc---cccceecccccccceeeeeCCeeEEEEceeeeecceeEEEee
Q 011125 286 -GQANIVTRVHCYNKATAFGGIGILVK-----LAD---AALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSI 356 (493)
Q Consensus 286 -gq~~ii~gvh~yN~~t~~GG~Gi~~~-----~~~---~~~~rI~ncyldy~~iv~~d~~~~~It~~~flg~a~v~l~~~ 356 (493)
....+++++++.+++.+.||+|+++| +++ ++.|||++| +|.+|+.|.+++.||++|.|++.++++|+.+
T Consensus 214 ~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~--r~dgI~~nsss~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 214 GDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNC--DYSAVRGNSASNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred cCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEecc--ccceEEEEcccCcEEECcEeeeeeeeEEEEE
Confidence 33889999999999999999999888 333 899999999 9999999999999999999999999999999
Q ss_pred cceeeeeEEEeeeccCCCCCCcceEeec--Cceeee
Q 011125 357 KGRISGLTIVENMFNGSPARNVPIIKLD--GEFSNI 390 (493)
Q Consensus 357 ~~~~~g~~I~~N~~~g~~~~gv~iv~~~--g~f~~i 390 (493)
++++|..|.+|.++|+ ..|+++++|+ |+...+
T Consensus 292 -fs~~g~~i~~N~~~g~-~~G~av~nf~~ggr~~~~ 325 (455)
T TIGR03808 292 -FAFEGAVIANNTVDGA-AVGVSVCNFNEGGRLAVV 325 (455)
T ss_pred -EeCCCcEEeccEEecC-cceEEEEeecCCceEEEE
Confidence 9999999999999999 9999999999 666544
No 2
>PLN02218 polygalacturonase ADPG
Probab=99.96 E-value=3.2e-26 Score=241.00 Aligned_cols=252 Identities=18% Similarity=0.217 Sum_probs=184.0
Q ss_pred CCeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCc-eEEeeccEEeC-CCCccee-Ee
Q 011125 55 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGG-NYKISKPIRFP-PGVGNVV-VQ 131 (493)
Q Consensus 55 ~~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgG-TYlIs~pI~lp-~g~Gni~-i~ 131 (493)
..++|||+||||++||++|+|+|||+||++||+.. |+++|++|+| +|++ +||.|. ||+.++. ..
T Consensus 64 ~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~------------Ggg~v~vP~G~tyl~-~~i~l~gp~ks~~~l~l 130 (431)
T PLN02218 64 TPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSN------------GAVNLLVPKGNTYLL-KSIQLTGPCKSIRTVQI 130 (431)
T ss_pred CCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcC------------CCcEEEECCCCeEEE-eeeEecCccCCceEEEE
Confidence 67899999999999999999999999999999543 5679999999 6998 799998 8876654 67
Q ss_pred CCeEEecC---CCCCCcceEEeccCCCcccccccceeecc----ceeecccccCcCCccccce-eeeeeEeecceeecce
Q 011125 132 GGTLRASD---TFPSDRHLIELWAPNSQKLKRTDAIKIDR----NYVFNDVKDQTARTYYEDI-TFRDVLFDSGFRGGGI 203 (493)
Q Consensus 132 ~GTLkAs~---~Fpgd~~lI~~~~~n~~~i~G~~~GtlDg----~w~~~c~~s~~~~~~~~~I-T~~~lv~D~n~~ggGI 203 (493)
+|+|+|++ +|+....||.+...+.+.++|+..|++|| ||...|.... ...|... ++..|....+....||
T Consensus 131 ~g~L~~s~d~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~--~~~~~~rP~~i~f~~~~nv~I~gi 208 (431)
T PLN02218 131 FGTLSASQKRSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNK--AKPCTKAPTALTFYNSKSLIVKNL 208 (431)
T ss_pred EEEEEeCCChhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCC--cCccCcCCEEEEEEccccEEEeCe
Confidence 89999986 56655679999888888898854599999 6766665321 3345433 6667777888999999
Q ss_pred EEeeeec--EEEeeeEEeee------------ccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCce
Q 011125 204 FVIDSAR--IRINNCFFLHF------------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNA 269 (493)
Q Consensus 204 ~v~nSq~--v~I~NC~~~~f------------nTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~~ 269 (493)
+++||++ +++.+|+.+.+ |||||++.+|+.+.|++|+|.. ||. ...|+-..++=.
T Consensus 209 tl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDD------cIaIksgs~nI~ 277 (431)
T PLN02218 209 RVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDD------CISIESGSQNVQ 277 (431)
T ss_pred EEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CCc------eEEecCCCceEE
Confidence 9999987 66667765555 9999999999999999999962 333 334443333348
Q ss_pred eeeEEEeecceeEEEecc-----eeEEEeeEEecccccccceeEEEeccccccceecccccccceeeeeCC
Q 011125 270 ITDVTIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDP 335 (493)
Q Consensus 270 ItD~~i~sa~~GI~v~gq-----~~ii~gvh~yN~~t~~GG~Gi~~~~~~~~~~rI~ncyldy~~iv~~d~ 335 (493)
|+|+... ..+||.++.. ...++++++.|+.-----.|+.+|-..-....++|= -|..|.+++-
T Consensus 278 I~n~~c~-~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI--~f~ni~m~~V 345 (431)
T PLN02218 278 INDITCG-PGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNI--IFQNIQMENV 345 (431)
T ss_pred EEeEEEE-CCCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEE--EEEeEEEEcc
Confidence 8898774 4689998733 125777777776432223466666211123345554 5566666654
No 3
>PLN02793 Probable polygalacturonase
Probab=99.95 E-value=2.7e-26 Score=242.27 Aligned_cols=250 Identities=17% Similarity=0.202 Sum_probs=181.1
Q ss_pred CCeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCc-eEEeeccEEeC-CCCccee-Ee
Q 011125 55 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGG-NYKISKPIRFP-PGVGNVV-VQ 131 (493)
Q Consensus 55 ~~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgG-TYlIs~pI~lp-~g~Gni~-i~ 131 (493)
..|+|||+||||++||++|+|+|||+||++||+.. ||++|++|+| +|++ +||.|. ||+.++. ..
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~------------ggg~v~vP~G~~fl~-~~i~l~gpcks~vtL~l 115 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSK------------VKTRIVIPAGYTFLV-RPIDLGGPCKAKLTLQI 115 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccC------------CCCEEEECCCceEEE-EEEEECCccCCCeEEEE
Confidence 56999999999999999999999999999998543 5689999999 5876 799998 8877776 67
Q ss_pred CCeEEecC---CCCC--CcceEEeccCCCcccccccceeecc----ceeecccccCcCCccccce-eeeeeEeecceeec
Q 011125 132 GGTLRASD---TFPS--DRHLIELWAPNSQKLKRTDAIKIDR----NYVFNDVKDQTARTYYEDI-TFRDVLFDSGFRGG 201 (493)
Q Consensus 132 ~GTLkAs~---~Fpg--d~~lI~~~~~n~~~i~G~~~GtlDg----~w~~~c~~s~~~~~~~~~I-T~~~lv~D~n~~gg 201 (493)
+|+|+|+. .|++ ...||.+...+.+.+.|+ |++|| ||...|.... ...|... ++..|.-..+....
T Consensus 116 ~g~l~~~~d~~~w~~~~~~~~i~~~~~~ni~ItG~--G~IDG~G~~ww~~~~~~~~--~~~~~~rP~~i~f~~~~nv~v~ 191 (443)
T PLN02793 116 SGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGG--GTVNGMGHEWWAQSCKINH--TNPCRHAPTAITFHKCKDLRVE 191 (443)
T ss_pred EEEEEccCChHHccCCCCceEEEEecCceEEEEec--eEEECCCcccccccccccC--CCCccCCceEEEEEeeccEEEE
Confidence 79999987 3443 246999988888889987 99999 6644453221 2234332 56666677788999
Q ss_pred ceEEeeeec--EEEeeeEEeee------------ccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCC
Q 011125 202 GIFVIDSAR--IRINNCFFLHF------------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASND 267 (493)
Q Consensus 202 GI~v~nSq~--v~I~NC~~~~f------------nTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd 267 (493)
+++++||++ +.+.+|+...+ |||||++..|+.+.|+||+|.. ||. ...|+-.+.+
T Consensus 192 gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDD------cIaik~~s~n 260 (443)
T PLN02793 192 NLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDD------CISIVGNSSR 260 (443)
T ss_pred CeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCC------eEEecCCcCC
Confidence 999999887 56666655544 9999999999999999999962 333 4444433333
Q ss_pred ceeeeEEEeecceeEEEecc-----eeEEEeeEEecccccccceeEEEec-cccccceecccccccceeeeeCCe
Q 011125 268 NAITDVTIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVKL-ADAALTRIDNCYLDYTGIVLEDPV 336 (493)
Q Consensus 268 ~~ItD~~i~sa~~GI~v~gq-----~~ii~gvh~yN~~t~~GG~Gi~~~~-~~~~~~rI~ncyldy~~iv~~d~~ 336 (493)
=.|.++.... .+||.++.. ..-++++++.|+.-.---.|+.+|- +| ....++|- -|..|++++-.
T Consensus 261 I~I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nI--tf~ni~m~nv~ 331 (443)
T PLN02793 261 IKIRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG-GSGNASKI--TFQNIFMENVS 331 (443)
T ss_pred EEEEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC-CCEEEEEE--EEEeEEEecCC
Confidence 4788887644 578998742 1247777777765433345777772 22 33456666 67777777653
No 4
>PLN02155 polygalacturonase
Probab=99.94 E-value=1.3e-25 Score=234.17 Aligned_cols=254 Identities=19% Similarity=0.223 Sum_probs=182.6
Q ss_pred CCeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeC-CCCccee-EeC
Q 011125 55 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFP-PGVGNVV-VQG 132 (493)
Q Consensus 55 ~~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp-~g~Gni~-i~~ 132 (493)
..++|||++|||++||++|+|+|||+||++||+.. ||++|++|+|+|++ +||.|. ||+.++. ..+
T Consensus 24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~------------gGg~v~vP~G~yl~-g~i~l~gpcksnv~l~l~ 90 (394)
T PLN02155 24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSA------------SSATVVVPTGTFLL-KVITFGGPCKSKITFQVA 90 (394)
T ss_pred CCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccC------------CCeEEEECCCcEEE-EEEEEcccCCCCceEEEe
Confidence 35799999999999999999999999999988543 57899999999997 799998 8987876 567
Q ss_pred CeEEecCCCCC---CcceEEeccCCCcccccccceeecc----ceeecccccCcCCccccc-eeeeeeEeecceeecceE
Q 011125 133 GTLRASDTFPS---DRHLIELWAPNSQKLKRTDAIKIDR----NYVFNDVKDQTARTYYED-ITFRDVLFDSGFRGGGIF 204 (493)
Q Consensus 133 GTLkAs~~Fpg---d~~lI~~~~~n~~~i~G~~~GtlDg----~w~~~c~~s~~~~~~~~~-IT~~~lv~D~n~~ggGI~ 204 (493)
|+|+||++++. ..+||.+...+.+.+.| |++|| ||. |.+. ..+|.. ..+..|....+....||+
T Consensus 91 G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~G---G~iDGqG~~ww~--~~~~---~~~~~~~p~~i~~~~~~nv~i~git 162 (394)
T PLN02155 91 GTVVAPEDYRTFGNSGYWILFNKVNRFSLVG---GTFDARANGFWS--CRKS---GQNCPPGVRSISFNSAKDVIISGVK 162 (394)
T ss_pred eEEECccccccccccceeEEEECcCCCEEEc---cEEecCceeEEE--cccC---CCCCCCcccceeEEEeeeEEEECeE
Confidence 99999986643 34799999988888886 89999 554 3322 234432 244566667788899999
Q ss_pred Eeeeec--EEEeeeEEeee------------ccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCcee
Q 011125 205 VIDSAR--IRINNCFFLHF------------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAI 270 (493)
Q Consensus 205 v~nSq~--v~I~NC~~~~f------------nTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~~I 270 (493)
++||++ +++.+|+...+ |||||++.+|+.+.|++|+|.. ||. ...|+-...+=.|
T Consensus 163 l~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~-----gDD------cIaik~gs~nI~I 231 (394)
T PLN02155 163 SMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQT-----GDD------CVAIGPGTRNFLI 231 (394)
T ss_pred EEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEec-----CCc------eEEcCCCCceEEE
Confidence 999887 66667765555 9999999999999999999862 333 4444433334588
Q ss_pred eeEEEeecceeEEEecc-----eeEEEeeEEecccccccceeEEEec-cccccceecccccccceeeeeCC-eeEEEEce
Q 011125 271 TDVTIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVKL-ADAALTRIDNCYLDYTGIVLEDP-VQVHVTNG 343 (493)
Q Consensus 271 tD~~i~sa~~GI~v~gq-----~~ii~gvh~yN~~t~~GG~Gi~~~~-~~~~~~rI~ncyldy~~iv~~d~-~~~~It~~ 343 (493)
.++...+ .+||.++.. ..-+++++++|+.-.--=.|+.+|- ++-....++|- -|..|.+++- .-+.|.-+
T Consensus 232 ~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI--~f~ni~m~~v~~pI~i~q~ 308 (394)
T PLN02155 232 TKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNV--FFQDLVMKNVENPIIIDQN 308 (394)
T ss_pred EEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEE--EEEeEEEcCccccEEEEec
Confidence 8877765 478998743 2246777776654222224677763 23234567776 6777777765 23444433
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.93 E-value=1.3e-24 Score=230.06 Aligned_cols=250 Identities=18% Similarity=0.229 Sum_probs=180.2
Q ss_pred CCeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCce-EEeeccEEeC-CCCcc-ee-E
Q 011125 55 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGN-YKISKPIRFP-PGVGN-VV-V 130 (493)
Q Consensus 55 ~~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGT-YlIs~pI~lp-~g~Gn-i~-i 130 (493)
+.++|||++|||++||++|+|+|||+||++||+.. ||++|++|+|+ |++ +||.|. ||++. +. .
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~------------ggg~v~VP~G~~yl~-~pl~l~gpck~~~~~~~ 86 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGT------------GDGQFVVPAGMTFML-QPLKFQGSCKSTPVFVQ 86 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhcc------------CCCEEEECCCceEEe-eeeEeCCCccCcceeec
Confidence 56799999999999999999999999999999543 56799999995 777 799999 88764 43 5
Q ss_pred eCCeEEecCC--CCC-CcceEEeccCCCcccccccceeecc----ceeecccccCcCCccccceeeeeeEeecceeecce
Q 011125 131 QGGTLRASDT--FPS-DRHLIELWAPNSQKLKRTDAIKIDR----NYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGI 203 (493)
Q Consensus 131 ~~GTLkAs~~--Fpg-d~~lI~~~~~n~~~i~G~~~GtlDg----~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~ggGI 203 (493)
.+|+|+|+.. +++ ...||.+.+.+.+.+.|+ |+||| ||.. ......+..|....+....||
T Consensus 87 i~G~i~ap~~~~w~~~~~~wI~f~~~~~i~I~G~--GtIDGqG~~wW~~----------~~~rP~~l~f~~~~nv~I~gi 154 (456)
T PLN03003 87 MLGKLVAPSKGNWKGDKDQWILFTDIEGLVIEGD--GEINGQGSSWWEH----------KGSRPTALKFRSCNNLRLSGL 154 (456)
T ss_pred cCceEecCccccccCCCcceEEEEcccceEEecc--ceEeCCchhhhhc----------ccCCceEEEEEecCCcEEeCe
Confidence 7899999763 332 235999999999999987 89999 5531 111235556667778899999
Q ss_pred EEeeeec--EEEeeeEEeee------------ccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCce
Q 011125 204 FVIDSAR--IRINNCFFLHF------------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNA 269 (493)
Q Consensus 204 ~v~nSq~--v~I~NC~~~~f------------nTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~~ 269 (493)
+++||++ +.+.+|....+ |||||++.+|+.+.|+||+|.. ||. ...|+-...+=.
T Consensus 155 tl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDD------CIaiksgs~NI~ 223 (456)
T PLN03003 155 THLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDD------CIAINSGTSNIH 223 (456)
T ss_pred EEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCC------eEEeCCCCccEE
Confidence 9999998 66677776655 9999999999999999999962 333 333332222347
Q ss_pred eeeEEEeecceeEEEecc-----eeEEEeeEEecccccccceeEEEe-ccccccceecccccccceeeeeCCee-EEEEc
Q 011125 270 ITDVTIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVK-LADAALTRIDNCYLDYTGIVLEDPVQ-VHVTN 342 (493)
Q Consensus 270 ItD~~i~sa~~GI~v~gq-----~~ii~gvh~yN~~t~~GG~Gi~~~-~~~~~~~rI~ncyldy~~iv~~d~~~-~~It~ 342 (493)
|.++...+ .+||.++.. ...+++++++|+.-.--=-|+.+| .+| ....++|- -|..|.+++-.+ |.|..
T Consensus 224 I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nI--tf~nI~m~nV~~pI~Idq 299 (456)
T PLN03003 224 ISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG-GSGYARMI--TFNGITLDNVENPIIIDQ 299 (456)
T ss_pred EEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEE--EEEeEEecCccceEEEEc
Confidence 88887755 589999733 135777877777422222466777 223 23456665 777777776533 44444
Q ss_pred ee
Q 011125 343 GF 344 (493)
Q Consensus 343 ~~ 344 (493)
+.
T Consensus 300 ~Y 301 (456)
T PLN03003 300 FY 301 (456)
T ss_pred cc
Confidence 43
No 6
>PLN03010 polygalacturonase
Probab=99.93 E-value=1e-23 Score=220.87 Aligned_cols=244 Identities=20% Similarity=0.276 Sum_probs=168.2
Q ss_pred CCeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCc-eEEeeccEEeC-CCCc-cee-E
Q 011125 55 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGG-NYKISKPIRFP-PGVG-NVV-V 130 (493)
Q Consensus 55 ~~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgG-TYlIs~pI~lp-~g~G-ni~-i 130 (493)
..++|||+||||++||++|+|+|||+||++||...+ |+++|++|+| +|++ +||.|. ||++ ++. .
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g-----------~~g~v~vP~G~~yl~-~~i~l~~pc~~~~v~l~ 110 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEG-----------NINTLLIPSGKTYLL-QPIEFKGPCKSTSIKVQ 110 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCC-----------CceEEEECCCCeEEE-EeEEecCCCCCCcEEEE
Confidence 467999999999999999999999999998873221 2379999999 7988 699999 8864 455 6
Q ss_pred eCCeEEecCC---CCC--CcceEEeccCCCcccccccceeecc----ceeecccccCcCCccccceeeeeeEeecceeec
Q 011125 131 QGGTLRASDT---FPS--DRHLIELWAPNSQKLKRTDAIKIDR----NYVFNDVKDQTARTYYEDITFRDVLFDSGFRGG 201 (493)
Q Consensus 131 ~~GTLkAs~~---Fpg--d~~lI~~~~~n~~~i~G~~~GtlDg----~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~gg 201 (493)
.+|+|+|+++ |+. ...||.+...+.+.+.|. |++|| ||. +..|....+....
T Consensus 111 l~G~l~~~~d~~~w~~~~~~~wi~f~~v~nv~I~G~--G~IDG~G~~ww~-----------------~l~~~~~~nv~v~ 171 (409)
T PLN03010 111 LDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGS--GTIDGRGSSFWE-----------------ALHISKCDNLTIN 171 (409)
T ss_pred EccEEEccCChhhccCCCCcceEEEecccccEEeec--eEEeCCCccccc-----------------eEEEEeecCeEEe
Confidence 7799999975 332 246999998888889986 99999 442 1223345556667
Q ss_pred ceEEeeeec--EEEeeeEEeee------------ccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCC
Q 011125 202 GIFVIDSAR--IRINNCFFLHF------------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASND 267 (493)
Q Consensus 202 GI~v~nSq~--v~I~NC~~~~f------------nTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd 267 (493)
||+++||++ +.+.+|....+ |||||++..|+.+.|++|+|.. ||. ...|+-.+..
T Consensus 172 gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~-----gDD------cIaiksgs~n 240 (409)
T PLN03010 172 GITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQT-----GDD------CIAINSGSSN 240 (409)
T ss_pred eeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEec-----CCC------eEEecCCCCc
Confidence 777777765 44445544333 9999999999999999999962 333 4444443322
Q ss_pred ceeeeEEEeecceeEEEecc-----eeEEEeeEEecccccccceeEEEeccccccceecccccccceeeeeCCee-EEEE
Q 011125 268 NAITDVTIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQ-VHVT 341 (493)
Q Consensus 268 ~~ItD~~i~sa~~GI~v~gq-----~~ii~gvh~yN~~t~~GG~Gi~~~~~~~~~~rI~ncyldy~~iv~~d~~~-~~It 341 (493)
-.|+++... ..+||.++.. ...++++++.|+.-.-.=-|+.+|--.-....++|- -|..|.+++-.+ |.|.
T Consensus 241 i~I~~~~C~-~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nI--tf~nI~m~~v~~pI~I~ 317 (409)
T PLN03010 241 INITQINCG-PGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNI--SFENITLINTKNPIIID 317 (409)
T ss_pred EEEEEEEeE-CcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEe--EEEeEEEecCCccEEEE
Confidence 355555443 4679988732 235788888777544333477777321134456666 677777776422 4444
Q ss_pred ce
Q 011125 342 NG 343 (493)
Q Consensus 342 ~~ 343 (493)
.+
T Consensus 318 q~ 319 (409)
T PLN03010 318 QQ 319 (409)
T ss_pred ee
Confidence 33
No 7
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.92 E-value=1.6e-23 Score=219.24 Aligned_cols=223 Identities=23% Similarity=0.280 Sum_probs=156.9
Q ss_pred CCeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeC-CCCc--ceeEe
Q 011125 55 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFP-PGVG--NVVVQ 131 (493)
Q Consensus 55 ~~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp-~g~G--ni~i~ 131 (493)
..++|||+||||++||.+|+|+|||+||++||+.. ||++|++|+|+|++ +||.|+ ||+. ++..
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~------------Ggg~V~vP~G~yl~-g~i~lkgpc~~~s~v~l- 98 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACAST------------GAVTLLIPPGTYYI-GPVQFHGPCTNVSSLTF- 98 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccC------------CCeEEEECCCeEEE-EeEEeCCCcCcceeEEE-
Confidence 67899999999999999999999999999998543 56799999999998 799999 8853 3323
Q ss_pred CCeEEecC---CCCCCcceEEeccCCCcccccccceeecc----ceeec-ccccCcCCccccce-eeeeeEeecceeecc
Q 011125 132 GGTLRASD---TFPSDRHLIELWAPNSQKLKRTDAIKIDR----NYVFN-DVKDQTARTYYEDI-TFRDVLFDSGFRGGG 202 (493)
Q Consensus 132 ~GTLkAs~---~Fpgd~~lI~~~~~n~~~i~G~~~GtlDg----~w~~~-c~~s~~~~~~~~~I-T~~~lv~D~n~~ggG 202 (493)
+|+|++ .|+....||.+...+.+.+.|+ |++|| ||... |.. ...|... .+..|....+....|
T Consensus 99 --~L~~s~d~~~y~~~~~~i~~~~~~ni~I~G~--G~IDG~G~~ww~~~~~~~----~~~~~~rP~~i~f~~~~nv~i~g 170 (404)
T PLN02188 99 --TLKAATDLSRYGSGNDWIEFGWVNGLTLTGG--GTFDGQGAAAWPFNKCPI----RKDCKLLPTSVKFVNMNNTVVRG 170 (404)
T ss_pred --EEEcCCCHHHCCCccceEEEeceeeEEEEee--EEEeCCCccccccccccc----CCCCCcCceEEEEEeeeeEEEeC
Confidence 999987 4554456999988888889886 99999 55432 322 1234333 555666677888999
Q ss_pred eEEeeeec--EEEeeeEEeee------------ccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCc
Q 011125 203 IFVIDSAR--IRINNCFFLHF------------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDN 268 (493)
Q Consensus 203 I~v~nSq~--v~I~NC~~~~f------------nTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~ 268 (493)
++++||++ +.+..|+...+ |||||++..|+.+.|++|+|.. ||. ...|+-...+=
T Consensus 171 itl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDD------cIaiksg~~nI 239 (404)
T PLN02188 171 ITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDD------CISIGQGNSQV 239 (404)
T ss_pred eEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCc------EEEEccCCccE
Confidence 99999887 55555654444 9999999999999999999862 332 33333222233
Q ss_pred eeeeEEEeecceeEEEec----c-eeEEEeeEEecccccccceeEEEe
Q 011125 269 AITDVTIFSAAIGVLLRG----Q-ANIVTRVHCYNKATAFGGIGILVK 311 (493)
Q Consensus 269 ~ItD~~i~sa~~GI~v~g----q-~~ii~gvh~yN~~t~~GG~Gi~~~ 311 (493)
.|.++... ..+||.++. + ..-++++++.|+.-.---.|+.+|
T Consensus 240 ~I~n~~c~-~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriK 286 (404)
T PLN02188 240 TITRIRCG-PGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIK 286 (404)
T ss_pred EEEEEEEc-CCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEE
Confidence 67776553 457888753 1 122555555555332223466665
No 8
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.82 E-value=9.8e-19 Score=162.36 Aligned_cols=206 Identities=21% Similarity=0.275 Sum_probs=117.2
Q ss_pred EEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCcceeEeCC----
Q 011125 58 VFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGG---- 133 (493)
Q Consensus 58 v~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~i~~G---- 133 (493)
++||++|||+|||++|+|+|||+||+++. ..++.+||||+|+|++++||.++++. .+ ..+|
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~-------------~~~g~~v~~P~G~Y~i~~~l~~~s~v-~l-~G~g~~~~ 65 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAA-------------AAGGGVVYFPPGTYRISGTLIIPSNV-TL-RGAGGNST 65 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHC-------------STTSEEEEE-SEEEEESS-EEE-TTE-EE-EESSTTTE
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcc-------------cCCCeEEEEcCcEEEEeCCeEcCCCe-EE-EccCCCee
Confidence 47999999999999999999999994432 23678999999999999999999863 23 3322
Q ss_pred eEEecCCCCCCcceEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeeccee-----ecceEEeee
Q 011125 134 TLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR-----GGGIFVIDS 208 (493)
Q Consensus 134 TLkAs~~Fpgd~~lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~-----ggGI~v~nS 208 (493)
.++.....+.-...... +.++. ......++++++.+|.... ..++++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~-------------~~~~~------------~~~~~~~~i~nl~i~~~~~~~~~~~~~i~~~~~ 120 (225)
T PF12708_consen 66 ILFLSGSGDSFSVVPGI-------------GVFDS------------GNSNIGIQIRNLTIDGNGIDPNNNNNGIRFNSS 120 (225)
T ss_dssp EEEECTTTSTSCCEEEE-------------EECCS------------CSCCEEEEEEEEEEEETCGCE-SCEEEEEETTE
T ss_pred EEEecCcccccccccce-------------eeeec------------CCCCceEEEEeeEEEcccccCCCCceEEEEEeC
Confidence 23311111110000000 00000 0111114577888888642 368889899
Q ss_pred ecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEcc-CCce-eeeEEEeecceeEEEec
Q 011125 209 ARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLAS-NDNA-ITDVTIFSAAIGVLLRG 286 (493)
Q Consensus 209 q~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~g-Nd~~-ItD~~i~sa~~GI~v~g 286 (493)
+.+.|.||++..++.+||.+..+....+.++... .++.++. .++. +.++.+.++..|+..+.
T Consensus 121 ~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 184 (225)
T PF12708_consen 121 QNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHV----------------SGIFIDNGSNNVIVNNCIFNGGDNGIILGN 184 (225)
T ss_dssp EEEEEEEEEEES-SS-SEEEECCEECEEECCEEE----------------EEEEEESCEEEEEEECEEEESSSCSEECEE
T ss_pred CeEEEEeEEEEccCccEEEEEccccCcEeecccc----------------eeeeeccceeEEEECCccccCCCceeEeec
Confidence 9999999999999999999984433333222211 1344442 1223 36777777777754444
Q ss_pred ceeEEEeeEEecccccccceeEEEeccc---cccceeccc
Q 011125 287 QANIVTRVHCYNKATAFGGIGILVKLAD---AALTRIDNC 323 (493)
Q Consensus 287 q~~ii~gvh~yN~~t~~GG~Gi~~~~~~---~~~~rI~nc 323 (493)
+..+++++.+.+. .+.||.+..-. +.+++|.||
T Consensus 185 ~~~~i~n~~~~~~----~~~gi~i~~~~~~~i~n~~i~~~ 220 (225)
T PF12708_consen 185 NNITISNNTFEGN----CGNGINIEGGSNIIISNNTIENC 220 (225)
T ss_dssp EEEEEECEEEESS----SSESEEEEECSEEEEEEEEEESS
T ss_pred ceEEEEeEEECCc----cceeEEEECCeEEEEEeEEEECC
Confidence 5556777666653 34455444111 345566666
No 9
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=1.8e-13 Score=148.07 Aligned_cols=170 Identities=21% Similarity=0.236 Sum_probs=108.1
Q ss_pred CCeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCcceeEeCC-
Q 011125 55 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGG- 133 (493)
Q Consensus 55 ~~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~i~~G- 133 (493)
..++++|.+|||++||.+|+|+|||+||+++.. .||++|+||+|+| +++||.|.+.. .+....|
T Consensus 79 ~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~-------------a~Gg~V~lPaGty-lsg~l~LKS~~-~L~l~ega 143 (542)
T COG5434 79 TDTAFSVSDDGAVGDGATDNTAAIQAAIDACAS-------------AGGGTVLLPAGTY-LSGPLFLKSNV-TLHLAEGA 143 (542)
T ss_pred ccceeeeccccccccCCccCHHHHHHHHHhhhh-------------hcCceEEECCcee-EeeeEEEeccc-EEEecCCc
Confidence 678999999999999999999999999986421 3789999999999 57999999874 5667788
Q ss_pred eEEecC---CCCC---------Cc---------ceEEec--------------cCCCcccccccceeecc--------ce
Q 011125 134 TLRASD---TFPS---------DR---------HLIELW--------------APNSQKLKRTDAIKIDR--------NY 170 (493)
Q Consensus 134 TLkAs~---~Fpg---------d~---------~lI~~~--------------~~n~~~i~G~~~GtlDg--------~w 170 (493)
||++++ +|+. .. +.|... .++.+.+.|. ++++| +|
T Consensus 144 tl~~~~~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~--~~i~g~~~~~g~~~~ 221 (542)
T COG5434 144 TLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGK--GTIDGNGYKRGDKWF 221 (542)
T ss_pred eeeCCCChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEecc--ceecCccccchhhhh
Confidence 888875 5552 11 111100 0111112222 45555 33
Q ss_pred eecc-cccCcCCccccceeeeeeEeecceeecceEEeeeec--EEEeeeEEeee-----------ccCcEEEeeeeeEEE
Q 011125 171 VFND-VKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSAR--IRINNCFFLHF-----------TTQGILVQRGHETFI 236 (493)
Q Consensus 171 ~~~c-~~s~~~~~~~~~IT~~~lv~D~n~~ggGI~v~nSq~--v~I~NC~~~~f-----------nTDGI~V~~s~~v~I 236 (493)
...- ...+-.+.. .+.-+..|.-..+....|+.+.++.. ++...|....| |+|||...+|+.+.|
T Consensus 222 ~~~g~~~~~i~~~~-~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI 300 (542)
T COG5434 222 SGLGAVETRIGGKG-VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLI 300 (542)
T ss_pred hcccchhhcccccC-cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEE
Confidence 2111 000000000 11122334445556666777766443 66666666666 889999999999999
Q ss_pred eeeeee
Q 011125 237 SSCFLG 242 (493)
Q Consensus 237 sns~ig 242 (493)
.+|+|-
T Consensus 301 ~~~~fd 306 (542)
T COG5434 301 EGCRFD 306 (542)
T ss_pred eccEEe
Confidence 999985
No 10
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.39 E-value=2e-11 Score=124.40 Aligned_cols=213 Identities=21% Similarity=0.225 Sum_probs=136.2
Q ss_pred CceEEEecCceEEeeccEEeC-CCCccee-EeCCeEEecC---CCCCCcceEEeccCCCcccccccceeecc----ceee
Q 011125 102 GGVIIDFQGGNYKISKPIRFP-PGVGNVV-VQGGTLRASD---TFPSDRHLIELWAPNSQKLKRTDAIKIDR----NYVF 172 (493)
Q Consensus 102 Gga~V~lPgGTYlIs~pI~lp-~g~Gni~-i~~GTLkAs~---~Fpgd~~lI~~~~~n~~~i~G~~~GtlDg----~w~~ 172 (493)
|+.+|++|+|+|++ +|+.|. ++.-... ..+|+++++. .++. ..||.+.......+.|+ |++|| ||..
T Consensus 5 ~~~~v~vP~g~~~~-~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~--G~IDG~G~~w~~~ 80 (326)
T PF00295_consen 5 GGGTVVVPAGTYLL-GPLFLKSTLHSDVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGK--GTIDGNGQAWWDG 80 (326)
T ss_dssp EEESEEESTSTEEE-EETSEETECETTCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTS--SEEE--GGGTCSS
T ss_pred cCCEEEECCCCeEE-ceeEEEcccCCCeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCC--ceEcCchhhhhcc
Confidence 56799999999998 799997 3311222 6789999884 4443 67999887766777776 89999 5543
Q ss_pred cccccCcCCccccceeeeeeEeecceeecceEEeeeec--EEEeeeEEeee------------ccCcEEEeeeeeEEEee
Q 011125 173 NDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSAR--IRINNCFFLHF------------TTQGILVQRGHETFISS 238 (493)
Q Consensus 173 ~c~~s~~~~~~~~~IT~~~lv~D~n~~ggGI~v~nSq~--v~I~NC~~~~f------------nTDGI~V~~s~~v~Isn 238 (493)
.+.+.. .... ...+..|....+.+..|++++||++ +.+.+|+...+ |||||.+.+|+.+.|+|
T Consensus 81 ~~~~~~--~~~~-rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n 157 (326)
T PF00295_consen 81 SGDANN--NGQR-RPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIEN 157 (326)
T ss_dssp CTTHCC--SSSS-SSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEES
T ss_pred cccccc--cccc-ccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEE
Confidence 333210 1111 2244444455578888999999887 66677766655 89999999999999999
Q ss_pred eeeeeccccCCCCCccccceEEEEEccCCceeeeEEEeecceeEEEe--cce---eEEEeeEEecccccccceeEEEecc
Q 011125 239 CFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLR--GQA---NIVTRVHCYNKATAFGGIGILVKLA 313 (493)
Q Consensus 239 s~ig~~~t~ggd~~e~~f~gtGI~l~gNd~~ItD~~i~sa~~GI~v~--gq~---~ii~gvh~yN~~t~~GG~Gi~~~~~ 313 (493)
|+|.. ||- ...|+-...+=.|+++.+.+ .+|+.++ +.. ..|+++++.|+.---.-.|+.+|-.
T Consensus 158 ~~i~~-----gDD------~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~ 225 (326)
T PF00295_consen 158 CFIDN-----GDD------CIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTW 225 (326)
T ss_dssp EEEES-----SSE------SEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEE
T ss_pred eeccc-----ccC------cccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEe
Confidence 99952 222 23333332234788888765 5778887 222 3578888888865555567777732
Q ss_pred ccccceecccccccceeeeeCC
Q 011125 314 DAALTRIDNCYLDYTGIVLEDP 335 (493)
Q Consensus 314 ~~~~~rI~ncyldy~~iv~~d~ 335 (493)
--....|+|= -|..|++++-
T Consensus 226 ~~~~G~v~nI--~f~ni~~~~v 245 (326)
T PF00295_consen 226 PGGGGYVSNI--TFENITMENV 245 (326)
T ss_dssp TTTSEEEEEE--EEEEEEEEEE
T ss_pred cccceEEece--EEEEEEecCC
Confidence 1233455554 6666666654
No 11
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.09 E-value=8.2e-09 Score=105.39 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=24.6
Q ss_pred HHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeC
Q 011125 78 ILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFP 122 (493)
Q Consensus 78 iq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp 122 (493)
||+|+++|- -|-+|+||+|+|+++++|.+.
T Consensus 1 iQ~Ai~~A~---------------~GDtI~l~~G~Y~~~~~l~I~ 30 (314)
T TIGR03805 1 LQEALIAAQ---------------PGDTIVLPEGVFQFDRTLSLD 30 (314)
T ss_pred CHhHHhhCC---------------CCCEEEECCCEEEcceeEEEe
Confidence 688998763 245999999999988888887
No 12
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.82 E-value=2e-08 Score=87.66 Aligned_cols=150 Identities=23% Similarity=0.347 Sum_probs=104.7
Q ss_pred ceEEeeeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEcc-CCceeeeEEEeecce
Q 011125 202 GIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLAS-NDNAITDVTIFSAAI 280 (493)
Q Consensus 202 GI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~g-Nd~~ItD~~i~sa~~ 280 (493)
||.+.++..+.|.+|.+.+...+||++..+..+.|++|.|.+ .+.||.+.+ ....|.|+.|..+..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-------------~~~gi~~~~~~~~~i~~~~~~~~~~ 68 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-------------GGYGIYVSGGSNVTISNNTISDNGS 68 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-------------STTSEEEECCES-EEES-EEES-SE
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-------------CCcEEEEecCCCeEEECeEEEEccc
Confidence 677777888999999999999999999999999999999985 134578885 466999999998889
Q ss_pred eEEEecc-eeEEEeeEEecccccccceeEEEeccccccceecccccccc---eeeeeCCe--eEEEEceeeeecceeEEE
Q 011125 281 GVLLRGQ-ANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYT---GIVLEDPV--QVHVTNGFFLGDANIVLK 354 (493)
Q Consensus 281 GI~v~gq-~~ii~gvh~yN~~t~~GG~Gi~~~~~~~~~~rI~ncyldy~---~iv~~d~~--~~~It~~~flg~a~v~l~ 354 (493)
|+.+.+. ...++++++++. ++.||++.. ..+...|.+|.+..+ +|.+.+.. .+.|.+|.|.+...--++
T Consensus 69 ~i~~~~~~~~~i~~~~i~~~----~~~gi~~~~-~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~ 143 (158)
T PF13229_consen 69 GIYVSGSSNITIENNRIENN----GDYGIYISN-SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIY 143 (158)
T ss_dssp EEECCS-CS-EEES-EEECS----SS-SCE-TC-EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE
T ss_pred eEEEEecCCceecCcEEEcC----CCccEEEec-cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEE
Confidence 9999855 669999999999 666888862 135677777777775 69998887 999999999988755555
Q ss_pred eecceeeeeEEEeeec
Q 011125 355 SIKGRISGLTIVENMF 370 (493)
Q Consensus 355 ~~~~~~~g~~I~~N~~ 370 (493)
.. ..-.++.|.+|.|
T Consensus 144 ~~-~~~~~~~v~~n~~ 158 (158)
T PF13229_consen 144 LI-SGSSNCTVTNNTF 158 (158)
T ss_dssp -T-T-SS--EEES-E-
T ss_pred EE-CCCCeEEEECCCC
Confidence 54 2223788888876
No 13
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.29 E-value=2.9e-06 Score=74.00 Aligned_cols=131 Identities=21% Similarity=0.344 Sum_probs=72.4
Q ss_pred CcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCc-eeeeEEEeecceeEEEecc-eeEEEeeEEecccc
Q 011125 224 QGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDN-AITDVTIFSAAIGVLLRGQ-ANIVTRVHCYNKAT 301 (493)
Q Consensus 224 DGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~-~ItD~~i~sa~~GI~v~gq-~~ii~gvh~yN~~t 301 (493)
+||.+..+..+.|++|.|.+.. +.||.+.+... .|.++.|.....||.+.+. ...++++.+++..
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~~------------~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~~~~~~i~~~~~~~~~- 67 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNNG------------GDGIHVSGSSNITIENCTISNGGYGIYVSGGSNVTISNNTISDNG- 67 (158)
T ss_dssp -CEEETTCEC-EEESEEEESSS------------SECEEE-SSCESEEES-EEESSTTSEEEECCES-EEES-EEES-S-
T ss_pred CEEEEECCcCeEEeeeEEEeCC------------CeEEEEEcCCCeEEECeEEECCCcEEEEecCCCeEEECeEEEEcc-
Confidence 6899999999999999997432 56688886655 8888888888888888875 5588888888775
Q ss_pred cccceeEEEeccc---cccceecccccccceeeeeC-CeeEEEEceeeeecceeEEEeecceeeeeEEEeeeccCC
Q 011125 302 AFGGIGILVKLAD---AALTRIDNCYLDYTGIVLED-PVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGS 373 (493)
Q Consensus 302 ~~GG~Gi~~~~~~---~~~~rI~ncyldy~~iv~~d-~~~~~It~~~flg~a~v~l~~~~~~~~g~~I~~N~~~g~ 373 (493)
.|+++.... +..++|.+| .-.+|.+++ ..++.|.+|.|.....-.++.....-..+.|.+|.|...
T Consensus 68 ----~~i~~~~~~~~~i~~~~i~~~--~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~ 137 (158)
T PF13229_consen 68 ----SGIYVSGSSNITIENNRIENN--GDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNN 137 (158)
T ss_dssp ----EEEECCS-CS-EEES-EEECS--SS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECE
T ss_pred ----ceEEEEecCCceecCcEEEcC--CCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeC
Confidence 555544211 444444444 111666665 556666666666654333333322222344444444443
No 14
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.26 E-value=2.9e-05 Score=74.84 Aligned_cols=152 Identities=24% Similarity=0.307 Sum_probs=116.5
Q ss_pred eeecceEEeeeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccC-CceeeeEEEe
Q 011125 198 FRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASN-DNAITDVTIF 276 (493)
Q Consensus 198 ~~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gN-d~~ItD~~i~ 276 (493)
+...||.+.++....|.++.+. ...+||.+..+....|+++.+... ..||.+++. +..|++..|.
T Consensus 11 ~~~~Gi~l~~~~~~~i~~n~i~-~~~~gi~~~~s~~~~I~~n~i~~~-------------~~GI~~~~s~~~~i~~n~i~ 76 (236)
T PF05048_consen 11 FVSNGIYLWNSSNNSIENNTIS-NSRDGIYVENSDNNTISNNTISNN-------------RYGIHLMGSSNNTIENNTIS 76 (236)
T ss_pred EEcCcEEEEeCCCCEEEcCEEE-eCCCEEEEEEcCCeEEEeeEEECC-------------CeEEEEEccCCCEEEeEEEE
Confidence 3448888888888888877664 567999999999999999988622 467888844 5699999999
Q ss_pred ecceeEEEecce-eEEEeeEEecccccccceeEEEeccc---cccceecccccccceeeeeCCeeEEEEceeeeecceeE
Q 011125 277 SAAIGVLLRGQA-NIVTRVHCYNKATAFGGIGILVKLAD---AALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIV 352 (493)
Q Consensus 277 sa~~GI~v~gq~-~ii~gvh~yN~~t~~GG~Gi~~~~~~---~~~~rI~ncyldy~~iv~~d~~~~~It~~~flg~a~v~ 352 (493)
....||.+.+.. .+|+++++.+... ||++.... +..+.|.+| ..+|.+.++.+.+|++|.|......-
T Consensus 77 ~n~~Gi~l~~s~~~~I~~N~i~~n~~-----GI~l~~s~~~~I~~N~i~~~---~~GI~l~~s~~n~I~~N~i~~n~~~G 148 (236)
T PF05048_consen 77 NNGYGIYLMGSSNNTISNNTISNNGY-----GIYLYGSSNNTISNNTISNN---GYGIYLSSSSNNTITGNTISNNTDYG 148 (236)
T ss_pred ccCCCEEEEcCCCcEEECCEecCCCc-----eEEEeeCCceEEECcEEeCC---CEEEEEEeCCCCEEECeEEeCCCccc
Confidence 888999998774 6899999998854 88887432 555555544 44999999999999999999986665
Q ss_pred EEeecceeeeeEEEeeeccCC
Q 011125 353 LKSIKGRISGLTIVENMFNGS 373 (493)
Q Consensus 353 l~~~~~~~~g~~I~~N~~~g~ 373 (493)
|+-. ..-++..|.+|.| ..
T Consensus 149 i~~~-~~s~~n~I~~N~f-~N 167 (236)
T PF05048_consen 149 IYFL-SGSSGNTIYNNNF-NN 167 (236)
T ss_pred eEEe-ccCCCCEEECCCc-cC
Confidence 5522 1225688999999 55
No 15
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.05 E-value=0.00025 Score=72.86 Aligned_cols=165 Identities=17% Similarity=0.204 Sum_probs=80.3
Q ss_pred eeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cCCceeeeEEEeecc-eeEEE
Q 011125 207 DSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDNAITDVTIFSAA-IGVLL 284 (493)
Q Consensus 207 nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gNd~~ItD~~i~sa~-~GI~v 284 (493)
.+..+.|.++.+.+...+||.+..++.+.|+++.+.-.. ++ .....+-||.+. +.+..|.|+.+.++. .||.+
T Consensus 61 ~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~----~~-~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv 135 (314)
T TIGR03805 61 TSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTG----GP-KSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV 135 (314)
T ss_pred EeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEecc----Cc-cccCCcceEEEeccCCEEEECCEEECCCcccEEE
Confidence 344455555555554455555555555555555543111 00 001124445555 334455555555433 25555
Q ss_pred ecc-eeEEEeeEEecccccccceeEEEe---ccccccceecccccccceeee--------eCCeeEEEEceeeeec----
Q 011125 285 RGQ-ANIVTRVHCYNKATAFGGIGILVK---LADAALTRIDNCYLDYTGIVL--------EDPVQVHVTNGFFLGD---- 348 (493)
Q Consensus 285 ~gq-~~ii~gvh~yN~~t~~GG~Gi~~~---~~~~~~~rI~ncyldy~~iv~--------~d~~~~~It~~~flg~---- 348 (493)
..- ..+++++++++.. -||++. ..-+..|++.++. .||.+ -...++.|.+|.|.+.
T Consensus 136 ~~s~~~~v~nN~~~~n~-----~GI~i~~S~~~~v~~N~~~~N~---~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n 207 (314)
T TIGR03805 136 GQSQNIVVRNNVAEENV-----AGIEIENSQNADVYNNIATNNT---GGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPN 207 (314)
T ss_pred CCCCCeEEECCEEccCc-----ceEEEEecCCcEEECCEEeccc---eeEEEeecCCCCcCCccceEEECCEEECCCCCC
Confidence 422 3455555554432 233332 1113334443331 24433 2345667777777653
Q ss_pred ----ceeEEE--eeccee----eeeEEEeeeccCCCCCCcceEeec
Q 011125 349 ----ANIVLK--SIKGRI----SGLTIVENMFNGSPARNVPIIKLD 384 (493)
Q Consensus 349 ----a~v~l~--~~~~~~----~g~~I~~N~~~g~~~~gv~iv~~~ 384 (493)
++.+.. ..+|.+ +.+.|.+|.|.+....++-++.++
T Consensus 208 ~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~~ 253 (314)
T TIGR03805 208 FAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSYH 253 (314)
T ss_pred CcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEecc
Confidence 333321 122333 688999999998877777776554
No 16
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.88 E-value=0.00056 Score=73.24 Aligned_cols=178 Identities=20% Similarity=0.235 Sum_probs=81.6
Q ss_pred eeecEEEeeeEEeeeccCcEEEeee----------eeEEEeeeeeeeccccCCCCCcc----------------------
Q 011125 207 DSARIRINNCFFLHFTTQGILVQRG----------HETFISSCFLGQRSTVGGDPGEK---------------------- 254 (493)
Q Consensus 207 nSq~v~I~NC~~~~fnTDGI~V~~s----------~~v~Isns~ig~~~t~ggd~~e~---------------------- 254 (493)
.++.-+|++|+|.+-.+.|-.+.-- .+-.|.+++++.++..|+..+|-
T Consensus 129 ~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlF 208 (425)
T PF14592_consen 129 YGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLF 208 (425)
T ss_dssp ---S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EE
T ss_pred eccCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccccceeeecchh
Confidence 5777899999999886666554411 24469999999888776633221
Q ss_pred ---ccceEEEEEccCCceeeeEEEeecceeEEEe-cceeEEEeeEEeccc--ccccceeEEEeccccccceecccc--cc
Q 011125 255 ---GFSGTAIDLASNDNAITDVTIFSAAIGVLLR-GQANIVTRVHCYNKA--TAFGGIGILVKLADAALTRIDNCY--LD 326 (493)
Q Consensus 255 ---~f~gtGI~l~gNd~~ItD~~i~sa~~GI~v~-gq~~ii~gvh~yN~~--t~~GG~Gi~~~~~~~~~~rI~ncy--ld 326 (493)
+-..-=|+..+++|++..=+|+-...++.++ |..+++.++-|.... ...||+.||....-+..+.+.+|= --
T Consensus 209 e~cdGE~EIISvKS~~N~ir~Ntf~es~G~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~ 288 (425)
T PF14592_consen 209 ERCDGEVEIISVKSSDNTIRNNTFRESQGSLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRF 288 (425)
T ss_dssp EEE-SSSEEEEEESBT-EEES-EEES-SSEEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TT
T ss_pred hhcCCceeEEEeecCCceEeccEEEeccceEEEecCCCceEeccEEecCCCcCCCCceEEecCCcEEEcceeecccccee
Confidence 0001225555667788888888888888886 778899999988654 467999999875556666666660 00
Q ss_pred cceee-ee-----------CCeeEEEEceeeeecc-eeEEEee--------------cc-eeeeeEEEeeeccCCCCCCc
Q 011125 327 YTGIV-LE-----------DPVQVHVTNGFFLGDA-NIVLKSI--------------KG-RISGLTIVENMFNGSPARNV 378 (493)
Q Consensus 327 y~~iv-~~-----------d~~~~~It~~~flg~a-~v~l~~~--------------~~-~~~g~~I~~N~~~g~~~~gv 378 (493)
..++. ++ -+.++.|.+|.|.... .|.+-+- .+ .-.-+.+.+|.+...-...+
T Consensus 289 ~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~i~~g~g~~~~~~~~~~~~~i~s~~p~~~~~~nN~i~~~~~~~~ 368 (425)
T PF14592_consen 289 RGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSPIHFGAGSDEERKDVLPASNIRSARPINSTFANNIIYNDDGDQY 368 (425)
T ss_dssp TTSEE-EEE--BSTTSTT---BSEEEES-EEES-SEEEESST-THHHHHHHHHHCT---B---SEEEES-EEE--SS---
T ss_pred ecceeeccCCCCCCcccccccceeEEecceEEccCCceEEccccccccccccccccccccCCceEEeeCCeEEcCCCCcc
Confidence 11232 11 1256788888888765 3444330 01 12366777888777633445
Q ss_pred ceEeec
Q 011125 379 PIIKLD 384 (493)
Q Consensus 379 ~iv~~~ 384 (493)
+++..|
T Consensus 369 ~~~~~d 374 (425)
T PF14592_consen 369 PIFNND 374 (425)
T ss_dssp -SEE-T
T ss_pred ceEecc
Confidence 555554
No 17
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.82 E-value=0.00044 Score=66.71 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=106.7
Q ss_pred CcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cCCceeeeEEEeecceeEEEecc-eeEEEeeEEecccc
Q 011125 224 QGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDNAITDVTIFSAAIGVLLRGQ-ANIVTRVHCYNKAT 301 (493)
Q Consensus 224 DGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gNd~~ItD~~i~sa~~GI~v~gq-~~ii~gvh~yN~~t 301 (493)
+||++..++...|+++.+... ..||.+. ..+..|.+..|.....||.+.+. ..+++++++.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~-------------~~gi~~~~s~~~~I~~n~i~~~~~GI~~~~s~~~~i~~n~i~~n~- 79 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNS-------------RDGIYVENSDNNTISNNTISNNRYGIHLMGSSNNTIENNTISNNG- 79 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeC-------------CCEEEEEEcCCeEEEeeEEECCCeEEEEEccCCCEEEeEEEEccC-
Confidence 899999999999988888622 3446555 56789999999999999999877 5699999999984
Q ss_pred cccceeEEEeccc---cccceecccccccceeeeeCCeeEEEEceeeeecceeEEEeecceeeeeEEEeeeccCCCCCCc
Q 011125 302 AFGGIGILVKLAD---AALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNV 378 (493)
Q Consensus 302 ~~GG~Gi~~~~~~---~~~~rI~ncyldy~~iv~~d~~~~~It~~~flg~a~v~l~~~~~~~~g~~I~~N~~~g~~~~gv 378 (493)
.||++.... ++.++|.+| .+ +|.+++.....|++|.|. ..+.-++-... ....|.+|.|.+....|+
T Consensus 80 ----~Gi~l~~s~~~~I~~N~i~~n--~~-GI~l~~s~~~~I~~N~i~-~~~~GI~l~~s--~~n~I~~N~i~~n~~~Gi 149 (236)
T PF05048_consen 80 ----YGIYLMGSSNNTISNNTISNN--GY-GIYLYGSSNNTISNNTIS-NNGYGIYLSSS--SNNTITGNTISNNTDYGI 149 (236)
T ss_pred ----CCEEEEcCCCcEEECCEecCC--Cc-eEEEeeCCceEEECcEEe-CCCEEEEEEeC--CCCEEECeEEeCCCccce
Confidence 788888443 778888888 44 999999999999999998 66666665522 788999999998855666
Q ss_pred ceE
Q 011125 379 PII 381 (493)
Q Consensus 379 ~iv 381 (493)
.+.
T Consensus 150 ~~~ 152 (236)
T PF05048_consen 150 YFL 152 (236)
T ss_pred EEe
Confidence 633
No 18
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.45 E-value=0.012 Score=62.48 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=115.1
Q ss_pred CeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCce-EEeeccEEeCCCCcceeEeCC-
Q 011125 56 GRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGN-YKISKPIRFPPGVGNVVVQGG- 133 (493)
Q Consensus 56 ~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGT-YlIs~pI~lp~g~Gni~i~~G- 133 (493)
+--=.|+.|=..|+- |=.+||++= |+|+|.||. |.|++||.++.+. .| +..|
T Consensus 41 ~~FEqvkt~~~~P~e--Dle~~I~~h----------------------aKVaL~Pg~~Y~i~~~V~I~~~c-YI-iGnGA 94 (386)
T PF01696_consen 41 YSFEQVKTYWMEPGE--DLEEAIRQH----------------------AKVALRPGAVYVIRKPVNIRSCC-YI-IGNGA 94 (386)
T ss_pred eeeEeEEEEEcCCCc--CHHHHHHhc----------------------CEEEeCCCCEEEEeeeEEecceE-EE-ECCCE
Confidence 333378899999965 666655432 577776665 9999999999432 34 4444
Q ss_pred eEEecCCCCCCcceEEeccCCCcccccccceeeccceeecccccCcCC-ccccceeeeeeEeecceeecceEEeeeecEE
Q 011125 134 TLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTAR-TYYEDITFRDVLFDSGFRGGGIFVIDSARIR 212 (493)
Q Consensus 134 TLkAs~~Fpgd~~lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~-~~~~~IT~~~lv~D~n~~ggGI~v~nSq~v~ 212 (493)
++|....-+. -+.....+. .++ ..=..+|+.++.|+..-.-.|+-+...-.+.
T Consensus 95 ~V~v~~~~~~---~f~v~~~~~-----------------------~P~V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~ 148 (386)
T PF01696_consen 95 TVRVNGPDRV---AFRVCMQSM-----------------------GPGVVGMEGVTFVNIRFEGRDTFSGVVFHANTNTL 148 (386)
T ss_pred EEEEeCCCCc---eEEEEcCCC-----------------------CCeEeeeeeeEEEEEEEecCCccceeEEEecceEE
Confidence 4553211111 122221111 001 0123568888888887666777677777799
Q ss_pred EeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccC-CceeeeEEEeecceeEEEecceeEE
Q 011125 213 INNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASN-DNAITDVTIFSAAIGVLLRGQANIV 291 (493)
Q Consensus 213 I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gN-d~~ItD~~i~sa~~GI~v~gq~~ii 291 (493)
|.+|.|.+|...=+... -...+++|++- -+-.||.-.+. +..|.-++|--...||...|... +
T Consensus 149 ~hgC~F~gf~g~cl~~~--~~~~VrGC~F~-------------~C~~gi~~~~~~~lsVk~C~FekC~igi~s~G~~~-i 212 (386)
T PF01696_consen 149 FHGCSFFGFHGTCLESW--AGGEVRGCTFY-------------GCWKGIVSRGKSKLSVKKCVFEKCVIGIVSEGPAR-I 212 (386)
T ss_pred EEeeEEecCcceeEEEc--CCcEEeeeEEE-------------EEEEEeecCCcceEEeeheeeeheEEEEEecCCeE-E
Confidence 99999999965555444 45667777763 13445555543 56888899999999998777755 5
Q ss_pred EeeEEeccc--ccccceeEE
Q 011125 292 TRVHCYNKA--TAFGGIGIL 309 (493)
Q Consensus 292 ~gvh~yN~~--t~~GG~Gi~ 309 (493)
+++-+.|+. --.+|.|..
T Consensus 213 ~hn~~~ec~Cf~l~~g~g~i 232 (386)
T PF01696_consen 213 RHNCASECGCFVLMKGTGSI 232 (386)
T ss_pred ecceecccceEEEEcccEEE
Confidence 555555442 224777765
No 19
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.35 E-value=0.0029 Score=68.32 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=115.0
Q ss_pred ceeecceEEeeeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cCC-ceeeeEE
Q 011125 197 GFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SND-NAITDVT 274 (493)
Q Consensus 197 n~~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gNd-~~ItD~~ 274 (493)
..+|.||+++++..+.|.+-++...-=|||-...++...|++..+. +.+| +||..+ +.+ +.+.+=+
T Consensus 236 ~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~~i~~N~~~-------~~R~-----~alhymfs~~g~~i~~N~ 303 (455)
T TIGR03808 236 GQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNIQITGNSVS-------DVRE-----VALYSEFAFEGAVIANNT 303 (455)
T ss_pred CCccccEEEEccCCeEEECCEEeccccceEEEEcccCcEEECcEee-------eeee-----eEEEEEEeCCCcEEeccE
Confidence 4578899999999988887776554449999999999999999986 2212 467777 666 7999999
Q ss_pred EeecceeEEEe-----c-----ceeEEEeeEEecc----cccccceeEEEe-ccccccceecccccccceeeeeCC---e
Q 011125 275 IFSAAIGVLLR-----G-----QANIVTRVHCYNK----ATAFGGIGILVK-LADAALTRIDNCYLDYTGIVLEDP---V 336 (493)
Q Consensus 275 i~sa~~GI~v~-----g-----q~~ii~gvh~yN~----~t~~GG~Gi~~~-~~~~~~~rI~ncyldy~~iv~~d~---~ 336 (493)
+.+++.|+.|- | |.|+||++.-..- .---.|+|||+. ..-+++|-|.|- +--+|++-=. +
T Consensus 304 ~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p~~~~~~~~~g~gi~~ead~~~~~n~~e~a--p~~g~~~gwg~y~r 381 (455)
T TIGR03808 304 VDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRPIGTAPDDDAGIGIYVEADTAVTGNVVENA--PSFGIVAGWGKYLR 381 (455)
T ss_pred EecCcceEEEEeecCCceEEEEecceeeccccCCCCCCCCCCCCceeEEEEecceeccceecCC--cceeEEecchHhhh
Confidence 99999999996 2 3556666554331 122478999998 223777877777 4445544322 5
Q ss_pred eEEEEceeeeecceeE--EEeecceeeeeEEEeeeccCCCCCCcceEeec
Q 011125 337 QVHVTNGFFLGDANIV--LKSIKGRISGLTIVENMFNGSPARNVPIIKLD 384 (493)
Q Consensus 337 ~~~It~~~flg~a~v~--l~~~~~~~~g~~I~~N~~~g~~~~gv~iv~~~ 384 (493)
++.||+|-.. ++.+= .... -...-+.|.+|+|++. ..| .|+.||
T Consensus 382 ~~~~~~n~~r-~~~~g~~vs~~-~~~g~~~~~~n~~~~~-~~g-a~~g~~ 427 (455)
T TIGR03808 382 DVAISGNVIR-NAFVGIGVSVV-DGAGTALVNNNVISET-PRG-AVVGLD 427 (455)
T ss_pred hhhhccceee-ccCccEEEEEe-cCccceEEeCccccCC-CCc-cEeecc
Confidence 6666666433 22221 1111 2233468999999999 445 677777
No 20
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=97.25 E-value=0.025 Score=62.35 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=72.0
Q ss_pred EEEeeeEEee---eccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCceeeeEEEeecceeEEEe-c
Q 011125 211 IRINNCFFLH---FTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLR-G 286 (493)
Q Consensus 211 v~I~NC~~~~---fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~~ItD~~i~sa~~GI~v~-g 286 (493)
.+|.|-+.++ ++||||.+-.+ ..|++||+.--. |. |+|-.++-.|.|++++....|-.+. |
T Consensus 358 ~~i~nyKqVGaW~~qtDGi~ly~n--S~i~dcF~h~nD----D~---------iKlYhS~v~v~~~ViWk~~Ngpiiq~G 422 (582)
T PF03718_consen 358 MNISNYKQVGAWYFQTDGIELYPN--STIRDCFIHVND----DA---------IKLYHSNVSVSNTVIWKNENGPIIQWG 422 (582)
T ss_dssp EEEEEEEEE---CTT----B--TT---EEEEEEEEESS-----S---------EE--STTEEEEEEEEEE-SSS-SEE--
T ss_pred ceeeceeeeeeEEeccCCccccCC--CeeeeeEEEecC----ch---------hheeecCcceeeeEEEecCCCCeEEee
Confidence 5666666666 39999999755 467899995322 33 7888778899999999977776664 2
Q ss_pred c-eeEEEeeEEecccccccceeEEEeccc----cccceeccccccc---ceeeeeCC----eeEEEEceeeeecceeEE-
Q 011125 287 Q-ANIVTRVHCYNKATAFGGIGILVKLAD----AALTRIDNCYLDY---TGIVLEDP----VQVHVTNGFFLGDANIVL- 353 (493)
Q Consensus 287 q-~~ii~gvh~yN~~t~~GG~Gi~~~~~~----~~~~rI~ncyldy---~~iv~~d~----~~~~It~~~flg~a~v~l- 353 (493)
= ---+++++++|+. |.-++.= .-.+-|-+|=-.| ..=---|| ++++|++--|+|--+=++
T Consensus 423 W~pr~isnv~veni~-------IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~r 495 (582)
T PF03718_consen 423 WTPRNISNVSVENID-------IIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFR 495 (582)
T ss_dssp CS---EEEEEEEEEE-------EEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEE
T ss_pred ccccccCceEEeeeE-------EEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEE
Confidence 2 1248888888873 2211111 1234455554445 21123344 588899999998544444
Q ss_pred -EeecceeeeeEEEeeecc
Q 011125 354 -KSIKGRISGLTIVENMFN 371 (493)
Q Consensus 354 -~~~~~~~~g~~I~~N~~~ 371 (493)
++. +..+++.|-|=.|.
T Consensus 496 i~pl-qn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 496 IYPL-QNYDNLVIKNVHFE 513 (582)
T ss_dssp E--S-EEEEEEEEEEEEEC
T ss_pred Eeec-CCCcceEEEEeecc
Confidence 333 56666666665555
No 21
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.035 Score=58.46 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=105.7
Q ss_pred eeecceEEeeeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cCCceeeeEEEe
Q 011125 198 FRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDNAITDVTIF 276 (493)
Q Consensus 198 ~~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gNd~~ItD~~i~ 276 (493)
-|+.||.+.|++...+-.-.+ .+..|||-+..|+.-.|++..+. +. -.|...+ .+|+.++|=...
T Consensus 148 ~rGnGI~vyNa~~a~V~~ndi-sy~rDgIy~~~S~~~~~~gnr~~-~~------------RygvHyM~t~~s~i~dn~s~ 213 (408)
T COG3420 148 ERGNGIYVYNAPGALVVGNDI-SYGRDGIYSDTSQHNVFKGNRFR-DL------------RYGVHYMYTNDSRISDNSSR 213 (408)
T ss_pred hccCceEEEcCCCcEEEcCcc-ccccceEEEcccccceecccchh-he------------eeeEEEEeccCcEeeccccc
Confidence 488999999999977754433 46789999999988888887765 22 3445555 778899998888
Q ss_pred ecceeEEEe-cceeEEEeeEEecccccccceeE-EEeccccccceecc-----cccccceeeeeCCeeEEEEceeeeecc
Q 011125 277 SAAIGVLLR-GQANIVTRVHCYNKATAFGGIGI-LVKLADAALTRIDN-----CYLDYTGIVLEDPVQVHVTNGFFLGDA 349 (493)
Q Consensus 277 sa~~GI~v~-gq~~ii~gvh~yN~~t~~GG~Gi-~~~~~~~~~~rI~n-----cyldy~~iv~~d~~~~~It~~~flg~a 349 (493)
....|..+- -..-++++++.+..+ ..|++. |.+.-.++.||+.. |-+-|+ ..-.+|++|.|+|.+
T Consensus 214 ~N~vG~ALMys~~l~V~~nrS~Gnr--d~Gillnya~~s~i~~N~v~g~~~Gk~vfiyn------~~~~ki~~n~feg~~ 285 (408)
T COG3420 214 DNRVGYALMYSDRLKVSDNRSSGNR--DHGILLNYANYSRIVGNRVAGNVSGKCVFIYN------ANYNKIRGNSFEGCA 285 (408)
T ss_pred CCcceEEEEEeccEEEEcCcccCcc--ccceeeeeeeccceeccEEEecccceEEEEec------cchhhhccceeecce
Confidence 888888775 335568888888765 555555 33334466776665 555554 345688999999865
Q ss_pred eeEEEeecceeeeeEEEeeeccCC
Q 011125 350 NIVLKSIKGRISGLTIVENMFNGS 373 (493)
Q Consensus 350 ~v~l~~~~~~~~g~~I~~N~~~g~ 373 (493)
-=+=.. ...+|..|.+|-|-|+
T Consensus 286 iGIhlt--agsegn~~~gNsFigN 307 (408)
T COG3420 286 IGIHLT--AGSEGNEIIGNSFIGN 307 (408)
T ss_pred EEEEEe--ccccCcEEeccccccc
Confidence 322111 2367888888888887
No 22
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.08 E-value=0.043 Score=55.31 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEee----ccEEeCCC
Q 011125 76 DAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKIS----KPIRFPPG 124 (493)
Q Consensus 76 ~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs----~pI~lp~g 124 (493)
+-|++|++.|- -|.+|+|-+|+|.-. .||++|++
T Consensus 16 ~Ti~~A~~~a~---------------~g~~i~l~~GtY~~~~ge~fPi~i~~g 53 (246)
T PF07602_consen 16 KTITKALQAAQ---------------PGDTIQLAPGTYSEATGETFPIIIKPG 53 (246)
T ss_pred HHHHHHHHhCC---------------CCCEEEECCceeccccCCcccEEecCC
Confidence 46778887652 245999999999764 36777765
No 23
>PLN02665 pectinesterase family protein
Probab=97.06 E-value=0.086 Score=55.96 Aligned_cols=198 Identities=13% Similarity=0.186 Sum_probs=106.2
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCcc
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDRH 146 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~~ 146 (493)
+||..| =.-||+||+++-... ....+|++.+|+|+ ..|.+|..+.++. +.+|. +..
T Consensus 74 ~dG~Gd-f~TIq~AIdaiP~~~-----------~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~---------~~t 130 (366)
T PLN02665 74 KDGSGD-FKTITDAIKSIPAGN-----------TQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPG---------AMP 130 (366)
T ss_pred CCCCCC-ccCHHHHHhhCcccC-----------CceEEEEEeCcEEE--EEEEecCCCCEEEEEecCC---------CCC
Confidence 345444 567999999753221 12368999999998 3699986656665 33331 122
Q ss_pred eEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeeccee--------ecceEE-eeeecEEEeeeE
Q 011125 147 LIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR--------GGGIFV-IDSARIRINNCF 217 (493)
Q Consensus 147 lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~--------ggGI~v-~nSq~v~I~NC~ 217 (493)
.|+....... . |+.+.. +- .....+.+.++|.|-+.+. ...+.+ +++.+..|.||.
T Consensus 131 iIt~~~~a~~--~----gT~~Sa---Tv------~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~ 195 (366)
T PLN02665 131 TLTFDGTAAK--Y----GTVYSA---TL------IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCR 195 (366)
T ss_pred EEEECCccCC--C----CCcceE---EE------EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcce
Confidence 4443221100 0 111110 00 0112233444554544431 123333 346679999999
Q ss_pred EeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cC-CceeeeEEEeeccee---EEE-ec-----
Q 011125 218 FLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SN-DNAITDVTIFSAAIG---VLL-RG----- 286 (493)
Q Consensus 218 ~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gN-d~~ItD~~i~sa~~G---I~v-~g----- 286 (493)
+.++-+. +..+.+ --|.++|+|.... |.. |+ ....-+|.|.+-+.| ..- .+
T Consensus 196 f~G~QDT-L~~~~g-r~yf~~CyIeG~V----------------DFIFG~g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~ 257 (366)
T PLN02665 196 FIGFQDT-LCDDKG-RHFFKDCYIEGTV----------------DFIFGSGKSLYLNTELHVVGDGGLRVITAQARNSEA 257 (366)
T ss_pred eccccce-eEeCCC-CEEEEeeEEeecc----------------ceeccccceeeEccEEEEecCCCcEEEEcCCCCCCC
Confidence 9988332 333333 4678999997332 222 44 335556666654433 221 11
Q ss_pred c--eeEEEeeEEecccccccceeEEEeccc--cccceecccccc
Q 011125 287 Q--ANIVTRVHCYNKATAFGGIGILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 287 q--~~ii~gvh~yN~~t~~GG~Gi~~~~~~--~~~~rI~ncyld 326 (493)
+ ++++.+|++... | ...||-||= .+..=..+|||+
T Consensus 258 ~~~GfvF~~C~itg~----~-~~~yLGRpW~~ysrvVf~~t~m~ 296 (366)
T PLN02665 258 EDSGFSFVHCKVTGT----G-TGAYLGRAWMSRPRVVFAYTEMS 296 (366)
T ss_pred CCceEEEEeeEEecC----C-CceeecCCCCCcceEEEEccccC
Confidence 2 567888777542 2 357888764 456667888887
No 24
>PLN02793 Probable polygalacturonase
Probab=96.59 E-value=0.041 Score=59.50 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=93.1
Q ss_pred ccccceeeeeeEeecc---eeecceEEeeeecEEEeeeEEeeeccCcEEEe-eeeeEEEeeeeeeeccccCCCCCccccc
Q 011125 182 TYYEDITFRDVLFDSG---FRGGGIFVIDSARIRINNCFFLHFTTQGILVQ-RGHETFISSCFLGQRSTVGGDPGEKGFS 257 (493)
Q Consensus 182 ~~~~~IT~~~lv~D~n---~~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~-~s~~v~Isns~ig~~~t~ggd~~e~~f~ 257 (493)
..|+.+++.++..+.. ..-+||.+..|+.+.|.||.+. -++|.|.+. .++.+.|+|+..+.
T Consensus 206 ~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~-~gDDcIaik~~s~nI~I~n~~c~~-------------- 270 (443)
T PLN02793 206 TNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVR-TGDDCISIVGNSSRIKIRNIACGP-------------- 270 (443)
T ss_pred EccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEe-CCCCeEEecCCcCCEEEEEeEEeC--------------
Confidence 4688889998888873 3568999999999999999664 789999996 68999999999741
Q ss_pred eEEEEEccC----------CceeeeEEEeecceeEEEe---cceeEEEeeEEecccccccceeEEEeccccccceecccc
Q 011125 258 GTAIDLASN----------DNAITDVTIFSAAIGVLLR---GQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCY 324 (493)
Q Consensus 258 gtGI~l~gN----------d~~ItD~~i~sa~~GI~v~---gq~~ii~gvh~yN~~t~~GG~Gi~~~~~~~~~~rI~ncy 324 (493)
|-||.+.+- +=.|.|+++.....|+.+- |..-.++++++.|+.-.-=...|++ +-+|
T Consensus 271 GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I----------~q~Y 340 (443)
T PLN02793 271 GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIII----------DQYY 340 (443)
T ss_pred CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEE----------Eeee
Confidence 223444421 1277788888888999984 3333588888888742222223333 3344
Q ss_pred cccceeeeeCCeeEEEEceeee
Q 011125 325 LDYTGIVLEDPVQVHVTNGFFL 346 (493)
Q Consensus 325 ldy~~iv~~d~~~~~It~~~fl 346 (493)
-+-.+--.+.+..++|++=.|.
T Consensus 341 ~~~~~~~~~~ts~v~I~nI~~~ 362 (443)
T PLN02793 341 CDSRKPCANQTSAVKVENISFV 362 (443)
T ss_pred cCCCCCCCCCCCCeEEEeEEEE
Confidence 3322222334455666665555
No 25
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.52 E-value=0.055 Score=57.92 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=77.4
Q ss_pred ccccceeeeeeEeecce---eecceEEeeeecEEEeeeEEeeeccCcEEEee-eeeEEEeeeeeeeccccCCCCCccccc
Q 011125 182 TYYEDITFRDVLFDSGF---RGGGIFVIDSARIRINNCFFLHFTTQGILVQR-GHETFISSCFLGQRSTVGGDPGEKGFS 257 (493)
Q Consensus 182 ~~~~~IT~~~lv~D~n~---~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~-s~~v~Isns~ig~~~t~ggd~~e~~f~ 257 (493)
..|+.+++.++..+... .-+||.+..|+.+.|.||++ .-++|.|.+.. ++.+.|+|++.+.
T Consensus 184 ~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I-~~GDDcIaiksg~~nI~I~n~~c~~-------------- 248 (404)
T PLN02188 184 VECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRI-GTGDDCISIGQGNSQVTITRIRCGP-------------- 248 (404)
T ss_pred EccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEE-eCCCcEEEEccCCccEEEEEEEEcC--------------
Confidence 46888899888887642 45899999999999999966 46899999974 5699999998741
Q ss_pred eEEEEEcc----C------CceeeeEEEeecceeEEEe-----cceeEEEeeEEeccc
Q 011125 258 GTAIDLAS----N------DNAITDVTIFSAAIGVLLR-----GQANIVTRVHCYNKA 300 (493)
Q Consensus 258 gtGI~l~g----N------d~~ItD~~i~sa~~GI~v~-----gq~~ii~gvh~yN~~ 300 (493)
|-||.+.+ . +=.|.|+.|.....|+.+- +..-.++++++.|+.
T Consensus 249 ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~ 306 (404)
T PLN02188 249 GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIV 306 (404)
T ss_pred CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEE
Confidence 23466532 1 1278888899999999993 122357777777774
No 26
>PLN02480 Probable pectinesterase
Probab=96.36 E-value=0.23 Score=52.33 Aligned_cols=195 Identities=13% Similarity=0.256 Sum_probs=104.0
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCcceeE-eCCeEEecCCCCCCcc
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRH 146 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~i-~~GTLkAs~~Fpgd~~ 146 (493)
++|.. +=.-||+||++|-.... ...+|+|.+|+|+ ..|.+|..+.+|.+ .+|. +..
T Consensus 54 ~~G~g-~f~TIQ~AIdaap~~~~-----------~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~---------~~T 110 (343)
T PLN02480 54 INGKG-DFTSVQSAIDAVPVGNS-----------EWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGK---------GRT 110 (343)
T ss_pred CCCCC-CcccHHHHHhhCccCCC-----------ceEEEEEcCcEEE--EEEEECCCCceEEEEecCC---------CCe
Confidence 34543 36789999997643221 2368999999997 57999855555643 2331 112
Q ss_pred eEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeecce--------eecceEE-eeeecEEEeeeE
Q 011125 147 LIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGF--------RGGGIFV-IDSARIRINNCF 217 (493)
Q Consensus 147 lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~--------~ggGI~v-~nSq~v~I~NC~ 217 (493)
.|+.......+. ++.+.++. -.+.++++|.+-+.+ ...++.+ +++.+..|.||.
T Consensus 111 vI~~~~~~~~~~-~saTvtV~----------------a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~ 173 (343)
T PLN02480 111 SIVWSQSSSDNA-ASATFTVE----------------APHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCA 173 (343)
T ss_pred EEEccccccCCC-CceEEEEE----------------CCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeE
Confidence 333222110000 00001111 112233333333332 1245555 457779999999
Q ss_pred EeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cC-CceeeeEEEeecc------eeEE-Ee---
Q 011125 218 FLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SN-DNAITDVTIFSAA------IGVL-LR--- 285 (493)
Q Consensus 218 ~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gN-d~~ItD~~i~sa~------~GI~-v~--- 285 (493)
+.++-+. +..+ ..--|.++|+|..+. |.. |+ ....-+|.|.+-+ .|.. ..
T Consensus 174 f~G~QDT-Ly~~-~gR~yf~~C~IeG~V----------------DFIFG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~ 235 (343)
T PLN02480 174 FYSTHNT-LFDY-KGRHYYHSCYIQGSI----------------DFIFGRGRSIFHNCEIFVIADRRVKIYGSITAHNRE 235 (343)
T ss_pred Eecccce-eEeC-CCCEEEEeCEEEeee----------------eEEccceeEEEEccEEEEecCCCCCCceEEEcCCCC
Confidence 9988433 2222 335678899997332 322 44 2244566666532 1321 11
Q ss_pred -cc--eeEEEeeEEecccccccceeEEEeccc--cccceecccccc
Q 011125 286 -GQ--ANIVTRVHCYNKATAFGGIGILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 286 -gq--~~ii~gvh~yN~~t~~GG~Gi~~~~~~--~~~~rI~ncyld 326 (493)
.+ ++++.+|++... | -.||-||= .+..=+.||||+
T Consensus 236 ~~~~~GfvF~~C~i~g~----g--~~yLGRPW~~ya~vVf~~t~l~ 275 (343)
T PLN02480 236 SEDNSGFVFIKGKVYGI----G--EVYLGRAKGAYSRVIFAKTYLS 275 (343)
T ss_pred CCCCCEEEEECCEEccc----C--ceeeecCCCCcceEEEEecccC
Confidence 11 568888887532 2 36777764 677778889887
No 27
>PLN02155 polygalacturonase
Probab=96.35 E-value=0.19 Score=53.83 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=81.6
Q ss_pred ccccceeeeeeEeecce---eecceEEeeeecEEEeeeEEeeeccCcEEEee-eeeEEEeeeeeeeccccCCCCCccccc
Q 011125 182 TYYEDITFRDVLFDSGF---RGGGIFVIDSARIRINNCFFLHFTTQGILVQR-GHETFISSCFLGQRSTVGGDPGEKGFS 257 (493)
Q Consensus 182 ~~~~~IT~~~lv~D~n~---~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~-s~~v~Isns~ig~~~t~ggd~~e~~f~ 257 (493)
..|+.+++.++.++... .-+||.+..|+.+.|.||++ .-++|.|.+.. ++.+.|+++..+.
T Consensus 174 ~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I-~~gDDcIaik~gs~nI~I~n~~c~~-------------- 238 (394)
T PLN02155 174 NGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTV-QTGDDCVAIGPGTRNFLITKLACGP-------------- 238 (394)
T ss_pred ECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEE-ecCCceEEcCCCCceEEEEEEEEEC--------------
Confidence 46788888888887742 44899999999999999966 46899999997 4799999988861
Q ss_pred eEEEEEcc-----C-----CceeeeEEEeecceeEEE--e--cceeEEEeeEEecccccccceeEEEe
Q 011125 258 GTAIDLAS-----N-----DNAITDVTIFSAAIGVLL--R--GQANIVTRVHCYNKATAFGGIGILVK 311 (493)
Q Consensus 258 gtGI~l~g-----N-----d~~ItD~~i~sa~~GI~v--~--gq~~ii~gvh~yN~~t~~GG~Gi~~~ 311 (493)
|-||.+.+ + +=+|.|++|.+...|+.+ + +..-.++++++.|+.---=...|+++
T Consensus 239 GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~ 306 (394)
T PLN02155 239 GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIID 306 (394)
T ss_pred CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEE
Confidence 12344432 1 227778888889999999 2 23345888888887432222345544
No 28
>PLN03010 polygalacturonase
Probab=96.20 E-value=0.29 Score=52.65 Aligned_cols=140 Identities=17% Similarity=0.166 Sum_probs=91.2
Q ss_pred ccccceeeeeeEeecc---eeecceEEeeeecEEEeeeEEeeeccCcEEEeeee-eEEEeeeeeeeccccCCCCCccccc
Q 011125 182 TYYEDITFRDVLFDSG---FRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGH-ETFISSCFLGQRSTVGGDPGEKGFS 257 (493)
Q Consensus 182 ~~~~~IT~~~lv~D~n---~~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~-~v~Isns~ig~~~t~ggd~~e~~f~ 257 (493)
..|+.+++.++.++.. ..-+|+.+..|+.+.|.||.+. -.+|.|.+..+. .+.|+++..+ .
T Consensus 186 ~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~-~gDDcIaiksgs~ni~I~~~~C~--~------------ 250 (409)
T PLN03010 186 KTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQ-TGDDCIAINSGSSNINITQINCG--P------------ 250 (409)
T ss_pred eccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEe-cCCCeEEecCCCCcEEEEEEEeE--C------------
Confidence 4678888888888763 3458999999999999999664 579999998863 6777766654 0
Q ss_pred eEEEEEcc--C--------CceeeeEEEeecceeEEEe---cceeEEEeeEEecccccccceeEEEeccccccceecccc
Q 011125 258 GTAIDLAS--N--------DNAITDVTIFSAAIGVLLR---GQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCY 324 (493)
Q Consensus 258 gtGI~l~g--N--------d~~ItD~~i~sa~~GI~v~---gq~~ii~gvh~yN~~t~~GG~Gi~~~~~~~~~~rI~ncy 324 (493)
|-||.+.+ . +=.|.|+.|.....|+.+- |..-.++++++.|+.---=... ..|+-||
T Consensus 251 gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~p----------I~I~q~Y 320 (409)
T PLN03010 251 GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNP----------IIIDQQY 320 (409)
T ss_pred cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCcc----------EEEEeec
Confidence 11233331 1 1267777778888899884 4344688888888742222222 3455566
Q ss_pred cccceeeeeCCeeEEEEceeee
Q 011125 325 LDYTGIVLEDPVQVHVTNGFFL 346 (493)
Q Consensus 325 ldy~~iv~~d~~~~~It~~~fl 346 (493)
-+-..--.++++.++|++=.|.
T Consensus 321 ~~~~~~~~~~~s~v~Isdi~~~ 342 (409)
T PLN03010 321 IDKGKLDATKDSAVAISNVKYV 342 (409)
T ss_pred cCCCCCCCCCCCceEEEeEEEE
Confidence 5433323455677777765554
No 29
>PLN02682 pectinesterase family protein
Probab=96.19 E-value=0.53 Score=50.20 Aligned_cols=135 Identities=13% Similarity=0.235 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCcceEEeccC
Q 011125 75 SDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDRHLIELWAP 153 (493)
Q Consensus 75 T~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~~lI~~~~~ 153 (493)
=.-||+||+++-... ....+|++-+|+|+ ..|.+|..+.++. +.+|. +...|+..+.
T Consensus 82 f~TIQ~AIdavP~~~-----------~~r~vI~Ik~G~Y~--EkV~Ip~~k~~Itl~G~g~---------~~TiIt~~~~ 139 (369)
T PLN02682 82 FTTIQAAIDSLPVIN-----------LVRVVIKVNAGTYR--EKVNIPPLKAYITLEGAGA---------DKTIIQWGDT 139 (369)
T ss_pred ccCHHHHHhhccccC-----------CceEEEEEeCceee--EEEEEeccCceEEEEecCC---------CccEEEeccc
Confidence 457999999753221 12369999999997 4699986566775 33342 2224443222
Q ss_pred CCc-ccccccceeeccceeecccccCcCCccccceeeeeeEeeccee--------ecceEE-eeeecEEEeeeEEeeecc
Q 011125 154 NSQ-KLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR--------GGGIFV-IDSARIRINNCFFLHFTT 223 (493)
Q Consensus 154 n~~-~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~--------ggGI~v-~nSq~v~I~NC~~~~fnT 223 (493)
... ..+|+..|+.... +-. ..-.+.+.++|.|-+.+. ...+.+ +++.+..|.||.+.++-+
T Consensus 140 a~~~~~~g~~~gT~~SA---T~~------v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QD 210 (369)
T PLN02682 140 ADTPGPGGRPLGTYGSA---TFA------VNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQD 210 (369)
T ss_pred cCccCCCCCccccccce---EEE------EECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecccc
Confidence 111 0111111122110 000 011223344444444431 123443 447779999999998822
Q ss_pred CcEEEeeeeeEEEeeeeee
Q 011125 224 QGILVQRGHETFISSCFLG 242 (493)
Q Consensus 224 DGI~V~~s~~v~Isns~ig 242 (493)
. +..+. .--|.++|+|.
T Consensus 211 T-Ly~~~-gRqyf~~C~Ie 227 (369)
T PLN02682 211 T-LYDHL-GRHYFKDCYIE 227 (369)
T ss_pred c-eEECC-CCEEEEeeEEc
Confidence 1 22222 24577888886
No 30
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.18 E-value=0.37 Score=49.78 Aligned_cols=115 Identities=17% Similarity=0.343 Sum_probs=79.6
Q ss_pred ccccceeeeeeEeecc---eeecceEEeeeecEEEeeeEEeeeccCcEEEeeee-eEEEeeeeeeeccccCCCCCccccc
Q 011125 182 TYYEDITFRDVLFDSG---FRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGH-ETFISSCFLGQRSTVGGDPGEKGFS 257 (493)
Q Consensus 182 ~~~~~IT~~~lv~D~n---~~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~-~v~Isns~ig~~~t~ggd~~e~~f~ 257 (493)
..|..+++.++.++.. ...+||.+..|+.+.|.||++. -.+|.|.+.++. .+.|+||++..
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~-~gDD~Iaiks~~~ni~v~n~~~~~-------------- 185 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFID-NGDDCIAIKSGSGNILVENCTCSG-------------- 185 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEE-SSSESEEESSEECEEEEESEEEES--------------
T ss_pred EccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecc-cccCcccccccccceEEEeEEEec--------------
Confidence 4577888888877764 3468999999999999999774 579999999988 99999999852
Q ss_pred eEEEEEc--cC--------CceeeeEEEeecceeEEEe---cceeEEEeeEEecccccccceeEEEe
Q 011125 258 GTAIDLA--SN--------DNAITDVTIFSAAIGVLLR---GQANIVTRVHCYNKATAFGGIGILVK 311 (493)
Q Consensus 258 gtGI~l~--gN--------d~~ItD~~i~sa~~GI~v~---gq~~ii~gvh~yN~~t~~GG~Gi~~~ 311 (493)
+-||.+. +. +-.+.|+.|.....|+.+- +..-.++++++.|+.---=...|++.
T Consensus 186 ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~ 252 (326)
T PF00295_consen 186 GHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFID 252 (326)
T ss_dssp SSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEE
T ss_pred cccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEE
Confidence 1123332 21 2377788888888998884 33345777777777432222444433
No 31
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=96.11 E-value=1.2 Score=48.36 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=33.6
Q ss_pred CCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCcceeE
Q 011125 67 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 130 (493)
Q Consensus 67 dptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~i 130 (493)
++||..| =.-||+||++|..... ....+|+|-+|+|+ ..|.+|..+.+|.+
T Consensus 87 a~dGsGd-f~TIQaAIdAa~~~~~----------~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL 137 (422)
T PRK10531 87 AGTQGVT-HTTVQAAVDAAIAKRT----------NKRQYIAVMPGTYQ--GTVYVPAAAPPITL 137 (422)
T ss_pred CCCCCCC-ccCHHHHHhhccccCC----------CceEEEEEeCceeE--EEEEeCCCCceEEE
Confidence 4455544 4579999987642211 11369999999997 36899865567763
No 32
>PLN02634 probable pectinesterase
Probab=95.86 E-value=0.7 Score=49.15 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=34.9
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
+||..| =.-||+||+++-.... ...+|++-+|+|+ ..|.+|..+.++. +.+|
T Consensus 62 ~dGsGd-f~TIQaAIda~P~~~~-----------~r~vI~Ik~GvY~--EkV~Ip~~k~~ItL~G~g 114 (359)
T PLN02634 62 ANGHGD-FRSVQDAVDSVPKNNT-----------MSVTIKINAGFYR--EKVVVPATKPYITFQGAG 114 (359)
T ss_pred CCCCCC-ccCHHHHHhhCcccCC-----------ccEEEEEeCceEE--EEEEEcCCCCeEEEEecC
Confidence 355544 5579999997633221 2368999999997 3699986666775 3434
No 33
>PLN02176 putative pectinesterase
Probab=95.84 E-value=0.77 Score=48.48 Aligned_cols=195 Identities=13% Similarity=0.219 Sum_probs=103.8
Q ss_pred CCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCc
Q 011125 67 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDR 145 (493)
Q Consensus 67 dptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~ 145 (493)
++||..| =.-||+||+++-.... ...+|++.+|+|+ ..|.+|..+.++. +.+|. +.
T Consensus 44 a~dGsGd-f~TIq~AIdavP~~~~-----------~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~---------~~ 100 (340)
T PLN02176 44 NPNDARY-FKTVQSAIDSIPLQNQ-----------NWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGI---------EK 100 (340)
T ss_pred CCCCCCC-ccCHHHHHhhchhcCC-----------ceEEEEECCcEEE--EEEEECCCCccEEEEEcCC---------Cc
Confidence 3455555 5689999997643221 2368999999998 3699996666776 44442 22
Q ss_pred ceEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeeccee---------ecceEE-eeeecEEEee
Q 011125 146 HLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR---------GGGIFV-IDSARIRINN 215 (493)
Q Consensus 146 ~lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~---------ggGI~v-~nSq~v~I~N 215 (493)
..|...+.... ++. .++ .....+.+.++|.+-+.+- +..+.+ +++.+..|.|
T Consensus 101 TiIt~~~~~~t--~~s--aT~--------------~v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~ 162 (340)
T PLN02176 101 TIIAYGDHQAT--DTS--ATF--------------TSYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIID 162 (340)
T ss_pred eEEEEeCCccc--ccc--eEE--------------EEECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEc
Confidence 24443221110 011 111 0111223444444444431 123333 3467799999
Q ss_pred eEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cC-CceeeeEEEeecc--------eeEEE-
Q 011125 216 CFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SN-DNAITDVTIFSAA--------IGVLL- 284 (493)
Q Consensus 216 C~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gN-d~~ItD~~i~sa~--------~GI~v- 284 (493)
|.+.++-+. +..+. .--+.++|+|.... |.. |+ ....-+|.|.+-+ .|..-
T Consensus 163 C~f~G~QDT-Ly~~~-gRqyf~~CyIeG~V----------------DFIFG~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA 224 (340)
T PLN02176 163 SSFDGFQDT-LFDGK-GRHYYKRCVISGGI----------------DFIFGYAQSIFEGCTLKLTLGIYPPNEPYGTITA 224 (340)
T ss_pred cEEecccce-eEeCC-cCEEEEecEEEecc----------------cEEecCceEEEeccEEEEecccCCCCCCcEEEEe
Confidence 999987333 33333 34678899987332 222 43 2244566665421 22222
Q ss_pred ec-----c--eeEEEeeEEecccccccceeEEEeccc--cccceecccccc
Q 011125 285 RG-----Q--ANIVTRVHCYNKATAFGGIGILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 285 ~g-----q--~~ii~gvh~yN~~t~~GG~Gi~~~~~~--~~~~rI~ncyld 326 (493)
.+ + ++++.+|++... | -.||-||= .+..=+.||||+
T Consensus 225 ~~r~~~~~~~GfvF~~C~itg~----g--~~yLGRPW~~yarvVf~~t~m~ 269 (340)
T PLN02176 225 QGRPSPSDKGGFVFKDCTVTGV----G--KALLGRAWGSYARVIFYRSRFS 269 (340)
T ss_pred CCCCCCCCCcEEEEECCEEccC----c--ceeeecCCCCCceEEEEecCcC
Confidence 11 1 567777777521 2 24677664 566667778776
No 34
>PLN02773 pectinesterase
Probab=95.65 E-value=0.88 Score=47.60 Aligned_cols=203 Identities=15% Similarity=0.290 Sum_probs=109.1
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCcc
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDRH 146 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~~ 146 (493)
+||..| =.-||+||+++-.... ...+|+|.+|+|+ ..|.+|..+.+|. +.++. +..
T Consensus 11 ~dGsGd-f~TIq~Aida~P~~~~-----------~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~---------~~T 67 (317)
T PLN02773 11 QDGSGD-YCTVQDAIDAVPLCNR-----------CRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSP---------EAT 67 (317)
T ss_pred CCCCCC-ccCHHHHHhhchhcCC-----------ceEEEEEeCceEE--EEEEECcCCccEEEEeCCC---------Cce
Confidence 355555 4579999997643221 2369999999998 4699995555675 33331 112
Q ss_pred eEEeccCCC-------cccccccceeeccceeecccccCcCCccccceeeeeeEeeccee---ecceEE-eeeecEEEee
Q 011125 147 LIELWAPNS-------QKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR---GGGIFV-IDSARIRINN 215 (493)
Q Consensus 147 lI~~~~~n~-------~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~---ggGI~v-~nSq~v~I~N 215 (493)
.|....... ....|. |++.... . .....+.+.++|.|-+.+. +..+.+ .++.+..|.|
T Consensus 68 iI~~~~~a~~~~~~~~~~~~g~--gT~~SaT----v-----~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~ 136 (317)
T PLN02773 68 VLTWNNTATKIDHHQASRVIGT--GTFGCGT----V-----IVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYN 136 (317)
T ss_pred EEEccCccccccccccccccCc--CccCceE----E-----EEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEc
Confidence 332111000 000010 1111000 0 0112333444555554432 233443 3477799999
Q ss_pred eEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cC-CceeeeEEEeecceeEEEe------cc
Q 011125 216 CFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SN-DNAITDVTIFSAAIGVLLR------GQ 287 (493)
Q Consensus 216 C~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gN-d~~ItD~~i~sa~~GI~v~------gq 287 (493)
|.+.++ -|=+-.+.+ --+.++|+|..+- +.. |+ .-..-+|.|.+-..|..-- .+
T Consensus 137 c~~~G~-QDTL~~~~g-r~yf~~c~IeG~V----------------DFIFG~g~a~Fe~c~i~s~~~g~ITA~~r~~~~~ 198 (317)
T PLN02773 137 CRFLGW-QDTLYLHYG-KQYLRDCYIEGSV----------------DFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQE 198 (317)
T ss_pred cEeecc-cceeEeCCC-CEEEEeeEEeecc----------------cEEeeccEEEEEeeEEEEccCcEEECCCCCCCCC
Confidence 999988 222223322 4688999997332 222 44 2356677777766665431 12
Q ss_pred --eeEEEeeEEeccccccccee-EEEeccc--cccceecccccc
Q 011125 288 --ANIVTRVHCYNKATAFGGIG-ILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 288 --~~ii~gvh~yN~~t~~GG~G-i~~~~~~--~~~~rI~ncyld 326 (493)
++++.+|++... ++.+ .||-||= .+..=+.||||+
T Consensus 199 ~~GfvF~~c~it~~----~~~~~~yLGRpW~~~a~vVf~~t~l~ 238 (317)
T PLN02773 199 STGYVFLRCVITGN----GGSGYMYLGRPWGPFGRVVFAYTYMD 238 (317)
T ss_pred CceEEEEccEEecC----CCCcceeecCCCCCCceEEEEecccC
Confidence 568888888653 2222 4777763 566777888887
No 35
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=95.39 E-value=0.96 Score=46.65 Aligned_cols=198 Identities=18% Similarity=0.290 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCcceEEeccC
Q 011125 75 SDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDRHLIELWAP 153 (493)
Q Consensus 75 T~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~~lI~~~~~ 153 (493)
=.-||+||+++-.... ...+|++.+|+|+ ..|.+|..+.++. +.+|. +...|....
T Consensus 12 f~TIq~Aida~p~~~~-----------~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~---------~~tiI~~~~- 68 (298)
T PF01095_consen 12 FTTIQAAIDAAPDNNT-----------SRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGR---------DKTIITGND- 68 (298)
T ss_dssp BSSHHHHHHHS-SSSS-----------S-EEEEE-SEEEE----EEE-STSTTEEEEES-T---------TTEEEEE---
T ss_pred ccCHHHHHHhchhcCC-----------ceEEEEEeCeeEc--cccEeccccceEEEEecCC---------CceEEEEec-
Confidence 4569999997643221 2369999999998 4699996555675 33331 222444311
Q ss_pred CCcccccccceeeccceeecccccCcCCccccceeeeeeEeeccee---ecceEE-eeeecEEEeeeEEeeeccCcEEEe
Q 011125 154 NSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR---GGGIFV-IDSARIRINNCFFLHFTTQGILVQ 229 (493)
Q Consensus 154 n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~---ggGI~v-~nSq~v~I~NC~~~~fnTDGI~V~ 229 (493)
+. .++. ++..... . ...-.++++++|.+-+.+- ...+.+ ..+.+..+.||.+.++-+ =+..+
T Consensus 69 ~~--~~~~--~t~~saT----~-----~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~QD-TL~~~ 134 (298)
T PF01095_consen 69 NA--ADGG--GTFRSAT----F-----SVNADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGYQD-TLYAN 134 (298)
T ss_dssp -T--TTB---HCGGC-S----E-----EE-STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-STT--EEE-
T ss_pred cc--cccc--ccccccc----c-----cccccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEccccc-eeeec
Confidence 10 0000 1111100 0 0111233444444443321 122222 346779999999999843 34444
Q ss_pred eeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cC-CceeeeEEEeecc-----eeEE-Eec-----c--eeEEEee
Q 011125 230 RGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SN-DNAITDVTIFSAA-----IGVL-LRG-----Q--ANIVTRV 294 (493)
Q Consensus 230 ~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gN-d~~ItD~~i~sa~-----~GI~-v~g-----q--~~ii~gv 294 (493)
.+ .-+..+|+|...- |.. |+ ....-+|.|.+-. .|.. -.+ + +.++.+|
T Consensus 135 ~~-r~y~~~c~IeG~v----------------DFIfG~~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c 197 (298)
T PF01095_consen 135 GG-RQYFKNCYIEGNV----------------DFIFGNGTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNC 197 (298)
T ss_dssp SS-EEEEES-EEEESE----------------EEEEESSEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-
T ss_pred cc-eeEEEeeEEEecC----------------cEEECCeeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEe
Confidence 43 5688999997332 222 32 2234445555321 1222 211 1 5588888
Q ss_pred EEecccccc---cceeEEEeccc--cccceecccccc
Q 011125 295 HCYNKATAF---GGIGILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 295 h~yN~~t~~---GG~Gi~~~~~~--~~~~rI~ncyld 326 (493)
++.-..... +-.-.||-||= .+..=+-|||||
T Consensus 198 ~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~m~ 234 (298)
T PF01095_consen 198 TITGDSGVSPSYSDGSVYLGRPWGPYSRVVFINTYMD 234 (298)
T ss_dssp EEEESTTTCGGCCCSTEEEE--SSEETEEEEES-EE-
T ss_pred EEecCccccccccceeEEecCcccceeeEEEEccccC
Confidence 888664332 23345777763 456667788777
No 36
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=95.36 E-value=1.2 Score=49.66 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=101.4
Q ss_pred CCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCc
Q 011125 67 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDR 145 (493)
Q Consensus 67 dptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~ 145 (493)
++||..| -.-||+||+++.... .....+||+.+|+|+ ..|.+|..+.++. +.+|. +.
T Consensus 230 a~dGsG~-f~TIq~AI~a~~~~~----------~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~---------~~ 287 (529)
T PLN02170 230 AADGSGT-HKTIGEALLSTSLES----------GGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGK---------GK 287 (529)
T ss_pred cCCCCCc-hhhHHHHHHhccccc----------CCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCC---------CC
Confidence 3455555 467999998643111 012379999999998 3589986666776 44552 22
Q ss_pred ceEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeecceeecceEE-eeeecEEEeeeEEeeeccC
Q 011125 146 HLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFV-IDSARIRINNCFFLHFTTQ 224 (493)
Q Consensus 146 ~lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~ggGI~v-~nSq~v~I~NC~~~~fnTD 224 (493)
..|+...... +|. +++..... ... +.+...++||++|-- .......+.+ +++.+..|.||.+.++-+.
T Consensus 288 TiIt~~~~~~---~g~--~T~~SaTv--~v~--~~~F~a~nitf~Nta--g~~~~QAVALrv~gDr~~fy~C~f~GyQDT 356 (529)
T PLN02170 288 TVIVGSRSNR---GGW--TTYQTATV--AAM--GDGFIARDITFVNSA--GPNSEQAVALRVGSDKSVVYRCSVEGYQDS 356 (529)
T ss_pred eEEEeCCcCC---CCC--ccccceEE--EEE--cCCeEEEeeEEEecC--CCCCCceEEEEecCCcEEEEeeeEeccCCc
Confidence 2444322110 010 01100000 000 112333444444310 0011233443 3466789999999988222
Q ss_pred cEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cC-CceeeeEEEeecc----eeEEE-e-----cc--eeE
Q 011125 225 GILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SN-DNAITDVTIFSAA----IGVLL-R-----GQ--ANI 290 (493)
Q Consensus 225 GI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gN-d~~ItD~~i~sa~----~GI~v-~-----gq--~~i 290 (493)
+..+.+ --|.++|+|... ||.. |+ .-..-+|.|.+-+ .|..- . ++ +++
T Consensus 357 -Ly~~~~-Rqyy~~C~I~Gt----------------VDFIFG~a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfv 418 (529)
T PLN02170 357 -LYTHSK-RQFYRETDITGT----------------VDFIFGNSAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGIS 418 (529)
T ss_pred -ceeCCC-CEEEEeeEEccc----------------cceecccceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEE
Confidence 222233 346789998722 2222 44 2244455555432 12221 1 12 557
Q ss_pred EEeeEEecccccccceeEEEeccc--cccceecccccc
Q 011125 291 VTRVHCYNKATAFGGIGILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 291 i~gvh~yN~~t~~GG~Gi~~~~~~--~~~~rI~ncyld 326 (493)
+.+|++... + -.||-||= .+..=+.+|||+
T Consensus 419 f~~C~it~~----~--~~yLGRPW~~ysrvVf~~t~l~ 450 (529)
T PLN02170 419 IHNCRITAE----S--MTYLGRPWKEYSRTVVMQSFID 450 (529)
T ss_pred EEeeEEecC----C--ceeeeCCCCCCceEEEEecccC
Confidence 777777542 1 36777764 456666788777
No 37
>PLN02218 polygalacturonase ADPG
Probab=95.09 E-value=0.63 Score=50.44 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=77.0
Q ss_pred eeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCc-eeeeEEEeecceeEEEe
Q 011125 207 DSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDN-AITDVTIFSAAIGVLLR 285 (493)
Q Consensus 207 nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~-~ItD~~i~sa~~GI~v~ 285 (493)
+++.+.|.+..+...----|++..|+.+.|++-+|-... +. ...-||++.+..+ .|.|+.|..+.-.|.+.
T Consensus 199 ~~~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~----~s----pNTDGIdi~ss~nV~I~n~~I~tGDDcIaIk 270 (431)
T PLN02218 199 NSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPA----DS----PNTDGIHITNTQNIRVSNSIIGTGDDCISIE 270 (431)
T ss_pred ccccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCC----CC----CCCCcEeecccceEEEEccEEecCCceEEec
Confidence 333333433333333445677788899999999885311 11 1235689987644 89999999999888886
Q ss_pred cc-ee-EEEeeEEecccccccceeEEEeccccccceecccccccceeeeeCCeeEEEEceeeeecc-eeEEEeec---ce
Q 011125 286 GQ-AN-IVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDA-NIVLKSIK---GR 359 (493)
Q Consensus 286 gq-~~-ii~gvh~yN~~t~~GG~Gi~~~~~~~~~~rI~ncyldy~~iv~~d~~~~~It~~~flg~a-~v~l~~~~---~~ 359 (493)
.. .+ .|++++|. +|-||=+--.+ .|.. ...=.+|+|.++.|.+.. =+-+|+-. |.
T Consensus 271 sgs~nI~I~n~~c~------~GHGisIGS~g-----------~~~~--~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~ 331 (431)
T PLN02218 271 SGSQNVQINDITCG------PGHGISIGSLG-----------DDNS--KAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGT 331 (431)
T ss_pred CCCceEEEEeEEEE------CCCCEEECcCC-----------CCCC--CceEEEEEEEccEEecCCcceEEeecCCCCeE
Confidence 44 44 56666664 23333211111 0100 001246667777776643 34455532 35
Q ss_pred eeeeEEEeeeccCC
Q 011125 360 ISGLTIVENMFNGS 373 (493)
Q Consensus 360 ~~g~~I~~N~~~g~ 373 (493)
++.+.+-|.....-
T Consensus 332 v~nI~f~ni~m~~V 345 (431)
T PLN02218 332 ASNIIFQNIQMENV 345 (431)
T ss_pred EEEEEEEeEEEEcc
Confidence 56666555555543
No 38
>PLN02916 pectinesterase family protein
Probab=94.86 E-value=2 Score=47.55 Aligned_cols=207 Identities=16% Similarity=0.202 Sum_probs=104.4
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCcc
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDRH 146 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~~ 146 (493)
+||..| =.-||+||+++-+.... +....+||+.+|+|+ ..+.+|..+.+++ +.+|. +..
T Consensus 193 ~dGsG~-f~TIq~AI~a~P~~~~~--------~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~---------~~T 252 (502)
T PLN02916 193 RDGSGT-HRTINQALAALSRMGKS--------RTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGM---------DKT 252 (502)
T ss_pred CCCCCC-ccCHHHHHHhcccccCC--------CCceEEEEEeCceee--EEEEecCCCceEEEEecCC---------CCc
Confidence 345444 45799999876432111 113479999999998 3689986556776 44452 222
Q ss_pred eEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeecce---eecceEE-eeeecEEEeeeEEeeec
Q 011125 147 LIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGF---RGGGIFV-IDSARIRINNCFFLHFT 222 (493)
Q Consensus 147 lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~---~ggGI~v-~nSq~v~I~NC~~~~fn 222 (493)
.|+..... .+|. .++..... ... +.+...++||++ +++ ....+.+ +++.+..|.+|.|.++-
T Consensus 253 iIt~~~~~---~~g~--~T~~SAT~--~v~--~~~F~A~nitf~-----Ntag~~~~QAVALrv~~D~a~fy~C~f~G~Q 318 (502)
T PLN02916 253 IITNNRNV---PDGS--TTYSSATF--GVS--GDGFWARDITFE-----NTAGPHKHQAVALRVSSDLSVFYRCSFKGYQ 318 (502)
T ss_pred EEEeCCcc---CCCC--cceeeEEE--EEE--CCCEEEEeeEEE-----eCCCCCCCceEEEEEcCCcEEEEeeeEeccC
Confidence 44432111 1111 01100000 000 112333444444 332 1233443 34667899999999882
Q ss_pred cCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cCC-ceeeeEEEeecc-----eeEEE-e-----cc--
Q 011125 223 TQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SND-NAITDVTIFSAA-----IGVLL-R-----GQ-- 287 (493)
Q Consensus 223 TDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gNd-~~ItD~~i~sa~-----~GI~v-~-----gq-- 287 (493)
+. +-.+.+ --|.++|+|.... |.. |+. ...-+|.|.+-+ .|..- . .|
T Consensus 319 DT-Ly~~~~-Rqyy~~C~I~GtV----------------DFIFG~a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~t 380 (502)
T PLN02916 319 DT-LFVHSL-RQFYRDCHIYGTI----------------DFIFGDAAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENT 380 (502)
T ss_pred ce-eEeCCC-CEEEEecEEeccc----------------ceeccCceEEEecCEEEEecCCCCCcceEEecCCCCCCCCc
Confidence 22 222222 3577899987332 222 332 233455554422 12211 1 22
Q ss_pred eeEEEeeEEecccc---cccceeEEEeccc--cccceecccccc
Q 011125 288 ANIVTRVHCYNKAT---AFGGIGILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 288 ~~ii~gvh~yN~~t---~~GG~Gi~~~~~~--~~~~rI~ncyld 326 (493)
+.++.+|++.-... ..|..-.||-||= .+.+=+.+|||+
T Consensus 381 Gfvf~~C~it~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t~~~ 424 (502)
T PLN02916 381 GISIQHSRVRASPEFEAVKGRFKSFLGRPWKKYSRTVFLKTDLD 424 (502)
T ss_pred EEEEEeeEEecCccccccccccceEeecCCCCCceEEEEecccC
Confidence 55778888765321 1233346887764 667777888777
No 39
>PLN03003 Probable polygalacturonase At3g15720
Probab=94.53 E-value=1.1 Score=49.13 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=94.0
Q ss_pred ceEEeeeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCc-eeeeEEEeecce
Q 011125 202 GIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDN-AITDVTIFSAAI 280 (493)
Q Consensus 202 GI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~-~ItD~~i~sa~~ 280 (493)
.+++.+++.+.|.+..+...----|++..|+.+.|++-.|-.... -.| --||++.+..+ .|.|+.|..+.-
T Consensus 140 ~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~------spN--TDGIDi~~S~nV~I~n~~I~tGDD 211 (456)
T PLN03003 140 ALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPES------SPN--TDGIDVGASSNVVIQDCIIATGDD 211 (456)
T ss_pred EEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCC------CCC--CCcEeecCcceEEEEecEEecCCC
Confidence 344445555555555444445567888889999999999863211 112 34699996644 899999999999
Q ss_pred eEEEecc-ee-EEEeeEEecccccccceeEEEeccccccceecccccccceeeeeCCeeEEEEceeeeecce-eEEEeec
Q 011125 281 GVLLRGQ-AN-IVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDAN-IVLKSIK 357 (493)
Q Consensus 281 GI~v~gq-~~-ii~gvh~yN~~t~~GG~Gi~~~~~~~~~~rI~ncyldy~~iv~~d~~~~~It~~~flg~a~-v~l~~~~ 357 (493)
.|.+... .+ .|+++.|. +|-||-+-- ..+ |-++ ++-.+|+|.++.|.+..| +-+|+-.
T Consensus 212 CIaiksgs~NI~I~n~~c~------~GHGISIGS----lg~----~g~~-----~~V~NV~v~n~~~~~T~nGvRIKT~~ 272 (456)
T PLN03003 212 CIAINSGTSNIHISGIDCG------PGHGISIGS----LGK----DGET-----ATVENVCVQNCNFRGTMNGARIKTWQ 272 (456)
T ss_pred eEEeCCCCccEEEEeeEEE------CCCCeEEee----ccC----CCCc-----ceEEEEEEEeeEEECCCcEEEEEEeC
Confidence 9999754 33 67777775 344543321 111 0011 123789999999988543 5677653
Q ss_pred ---ceeeeeEEEeeeccCC
Q 011125 358 ---GRISGLTIVENMFNGS 373 (493)
Q Consensus 358 ---~~~~g~~I~~N~~~g~ 373 (493)
|.++++.+-|-..++-
T Consensus 273 Gg~G~v~nItf~nI~m~nV 291 (456)
T PLN03003 273 GGSGYARMITFNGITLDNV 291 (456)
T ss_pred CCCeEEEEEEEEeEEecCc
Confidence 4788888888777766
No 40
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=94.28 E-value=0.053 Score=44.37 Aligned_cols=36 Identities=36% Similarity=0.419 Sum_probs=24.5
Q ss_pred CCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEee
Q 011125 66 ADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKIS 116 (493)
Q Consensus 66 AdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs 116 (493)
|++||.+|||+||.+|+++. ..|-+|..-+=||++|
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---------------~~g~~IDg~GlTykVs 36 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---------------PVGRKIDGAGLTYKVS 36 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----------------TTS-EE-TT-EEEES
T ss_pred CCCccccCcHHHHHHHHhcc---------------CCCeEEecCCceEEEe
Confidence 68999999999999999873 2456888888899997
No 41
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=93.77 E-value=3.2 Score=46.55 Aligned_cols=205 Identities=18% Similarity=0.164 Sum_probs=102.1
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCcce
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDRHL 147 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~~l 147 (493)
||..| =.-||+||+++-.... .+..+||+.+|+|+= .|.+|..+.+++ +.+|. +...
T Consensus 248 dGsg~-f~TIq~Av~a~p~~~~----------~~r~vI~vk~GvY~E--~V~i~~~k~~v~l~G~g~---------~~Ti 305 (553)
T PLN02708 248 DGNCC-YKTVQEAVNAAPDNNG----------DRKFVIRIKEGVYEE--TVRVPLEKKNVVFLGDGM---------GKTV 305 (553)
T ss_pred CCCCC-ccCHHHHHHhhhhccC----------CccEEEEEeCceEEe--eeeecCCCccEEEEecCC---------CceE
Confidence 44433 4679999987643210 123699999999983 699986566776 45553 1224
Q ss_pred EEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeeccee---ecceEE-eeeecEEEeeeEEeeecc
Q 011125 148 IELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR---GGGIFV-IDSARIRINNCFFLHFTT 223 (493)
Q Consensus 148 I~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~---ggGI~v-~nSq~v~I~NC~~~~fnT 223 (493)
|....... .+|. +++... +-. ..-.+...++|.|-++.. ...+.+ ..+.+..|.||.|.++-
T Consensus 306 It~~~~~~--~~g~--~T~~sa---T~~------v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q- 371 (553)
T PLN02708 306 ITGSLNVG--QPGI--STYNTA---TVG------VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ- 371 (553)
T ss_pred EEecCccC--CCCc--CccceE---EEE------EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc-
Confidence 44221110 0010 011000 000 011122333444444331 233444 33667999999999882
Q ss_pred CcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cCC-ceeeeEEEeec----------ceeEEEec-----
Q 011125 224 QGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SND-NAITDVTIFSA----------AIGVLLRG----- 286 (493)
Q Consensus 224 DGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gNd-~~ItD~~i~sa----------~~GI~v~g----- 286 (493)
|=.-.+.+ --|.++|+|.... |.. |+. -..-+|.|..- ...|-..+
T Consensus 372 DTLy~~~~-rq~y~~C~I~GtV----------------DFIFG~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~ 434 (553)
T PLN02708 372 DTLYAHSL-RQFYKSCRIQGNV----------------DFIFGNSAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPA 434 (553)
T ss_pred ccceeCCC-ceEEEeeEEeecC----------------CEEecCceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCC
Confidence 22333333 3477888887332 222 332 23334555432 12222222
Q ss_pred c--eeEEEeeEEeccccc-------ccceeEEEeccc--cccceecccccc
Q 011125 287 Q--ANIVTRVHCYNKATA-------FGGIGILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 287 q--~~ii~gvh~yN~~t~-------~GG~Gi~~~~~~--~~~~rI~ncyld 326 (493)
| +++|.+|++...... .+-.-.||-||= .+.+=+.+|||+
T Consensus 435 ~~~G~vf~~C~it~~~~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~ 485 (553)
T PLN02708 435 QSTGFVFQNCLINGTEEYMKLYRSNPKVHKNFLGRPWKEYSRTVFIGCNLE 485 (553)
T ss_pred CCceEEEEccEEecCCcccccccccccccceeeecCCCCcceEEEEecccC
Confidence 2 457777877543210 111245777764 566667778776
No 42
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=93.68 E-value=2.4 Score=47.25 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=35.8
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
+||..| =.-||+||+++-.... ...+||+.+|+|+ ..|.+|..+.+|. +.+|
T Consensus 212 ~dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g 264 (520)
T PLN02201 212 ADGTGN-FTTIMDAVLAAPDYST-----------KRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDG 264 (520)
T ss_pred CCCCCC-ccCHHHHHHhchhcCC-----------CcEEEEEeCceeE--EEEEecCCCceEEEEecC
Confidence 344444 5679999987643221 2379999999998 3699996666776 4455
No 43
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=93.61 E-value=4.6 Score=45.15 Aligned_cols=207 Identities=14% Similarity=0.157 Sum_probs=102.1
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCcc
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDRH 146 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~~ 146 (493)
+||..| =.-||+||+++-....+. .+..+||+.+|+|+ ..|.+|..+.+++ +.+|. +..
T Consensus 229 ~dGsG~-f~TI~~Av~a~p~~~~~~--------~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~---------~~t 288 (538)
T PLN03043 229 PYGTDN-FTTITDAIAAAPNNSKPE--------DGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGI---------NKT 288 (538)
T ss_pred CCCCCC-CcCHHHHHHhccccCCCC--------cceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCC---------CCe
Confidence 345444 457999998753321110 13469999999997 3699996667886 45552 223
Q ss_pred eEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeecce---eecceEE-eeeecEEEeeeEEeeec
Q 011125 147 LIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGF---RGGGIFV-IDSARIRINNCFFLHFT 222 (493)
Q Consensus 147 lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~---~ggGI~v-~nSq~v~I~NC~~~~fn 222 (493)
.|+..... .+|. +++..... .. .-.+...++|.|-+.+ ....+.+ .++.+..|.||.|.++-
T Consensus 289 iIt~~~~~---~dg~--~T~~saT~--~v-------~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQ 354 (538)
T PLN03043 289 IITGNHSV---VDGW--TTFNSSTF--AV-------SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQ 354 (538)
T ss_pred EEEeCCcc---CCCC--ccccceEE--EE-------ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccC
Confidence 44422110 1111 01110000 00 1112233344444432 1233433 33666889999999882
Q ss_pred cCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cCC-ceeeeEEEeec------ceeEEEe-----cc--
Q 011125 223 TQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SND-NAITDVTIFSA------AIGVLLR-----GQ-- 287 (493)
Q Consensus 223 TDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gNd-~~ItD~~i~sa------~~GI~v~-----gq-- 287 (493)
+. +-.+.+ --|.++|+|.... +.. ||. -..-+|.|.+- ...|-.. .|
T Consensus 355 DT-Ly~~~~-rq~y~~c~I~GtV----------------DFIFG~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~t 416 (538)
T PLN03043 355 DT-LYVHSL-RQFYRECDIYGTV----------------DFIFGNAAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNT 416 (538)
T ss_pred cc-cccCCC-cEEEEeeEEeecc----------------ceEeecceeeeeccEEEEecCCCCCCceEEecCCCCCCCCc
Confidence 21 222222 3578888887332 222 331 23334555441 1122221 12
Q ss_pred eeEEEeeEEecccc---cccceeEEEeccc--cccceecccccc
Q 011125 288 ANIVTRVHCYNKAT---AFGGIGILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 288 ~~ii~gvh~yN~~t---~~GG~Gi~~~~~~--~~~~rI~ncyld 326 (493)
+.+|.+|++.-... ..+..-.||-||= .+.+=+.+|||+
T Consensus 417 G~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~ 460 (538)
T PLN03043 417 GISIINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIG 460 (538)
T ss_pred eEEEEecEEecCCcccccccccceeccCCCCCCceEEEEecccC
Confidence 45677777764311 1122235777763 677778888777
No 44
>PLN02497 probable pectinesterase
Probab=93.56 E-value=4.8 Score=42.51 Aligned_cols=195 Identities=15% Similarity=0.243 Sum_probs=100.8
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCcc
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDRH 146 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~~ 146 (493)
+||..| =.-||+||+++-.... ...+|++-+|+|+ ..|.+|..+.++. +.+|. +..
T Consensus 38 ~dGsGd-f~TIq~AIdavP~~~~-----------~~~~I~Ik~G~Y~--EkV~Ip~~k~~itl~G~g~---------~~t 94 (331)
T PLN02497 38 QSGHGN-FTTIQSAIDSVPSNNK-----------HWFCINVKAGLYR--EKVKIPYDKPFIVLVGAGK---------RRT 94 (331)
T ss_pred CCCCCC-ccCHHHHHhhccccCC-----------ceEEEEEeCcEEE--EEEEecCCCCcEEEEecCC---------CCc
Confidence 345444 5679999987643221 1258999999997 4699985555665 33331 222
Q ss_pred eEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeeccee----------ecceEE-eeeecEEEee
Q 011125 147 LIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR----------GGGIFV-IDSARIRINN 215 (493)
Q Consensus 147 lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~----------ggGI~v-~nSq~v~I~N 215 (493)
.|+..+.... .++ .++. ....+...++|.+-+.+. ...+.+ +++.+..|.|
T Consensus 95 iIt~~~~~~t--~~S--aT~~--------------v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~ 156 (331)
T PLN02497 95 RIEWDDHDST--AQS--PTFS--------------TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYS 156 (331)
T ss_pred eEEEeccccc--cCc--eEEE--------------EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEe
Confidence 4443221110 011 1110 011122333333333321 123333 4467789999
Q ss_pred eEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cCC-ceeeeEEEeecc-------eeEEE-e
Q 011125 216 CFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SND-NAITDVTIFSAA-------IGVLL-R 285 (493)
Q Consensus 216 C~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gNd-~~ItD~~i~sa~-------~GI~v-~ 285 (493)
|.|.++-+. +..+.+ --|.++|+|.... |.- |+. ...-+|.|.+-. .|..- .
T Consensus 157 C~f~G~QDT-Ly~~~g-Rqyf~~C~IeG~V----------------DFIFG~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~ 218 (331)
T PLN02497 157 CGFAGVQDT-LWDSDG-RHYFKRCTIQGAV----------------DFIFGSGQSIYESCVIQVLGGQLEPGLAGFITAQ 218 (331)
T ss_pred eEEeccccc-eeeCCC-cEEEEeCEEEecc----------------cEEccCceEEEEccEEEEecCcCCCCCceEEEec
Confidence 999998333 323333 4688899997332 222 332 233455555421 13222 1
Q ss_pred c-----c--eeEEEeeEEecccccccceeEEEeccc--cccceeccccccc
Q 011125 286 G-----Q--ANIVTRVHCYNKATAFGGIGILVKLAD--AALTRIDNCYLDY 327 (493)
Q Consensus 286 g-----q--~~ii~gvh~yN~~t~~GG~Gi~~~~~~--~~~~rI~ncyldy 327 (493)
+ + ++++.+|++... | =.||-||= .+..=..+|||+=
T Consensus 219 ~r~~~~~~~GfvF~~C~itg~----g--~~yLGRPW~~ysrvvf~~t~m~~ 263 (331)
T PLN02497 219 GRTNPYDANGFVFKNCLVYGT----G--SAYLGRPWRGYSRVLFYNSNLTD 263 (331)
T ss_pred CCCCCCCCceEEEEccEEccC----C--CEEEeCCCCCCceEEEEecccCC
Confidence 1 1 567888887632 1 35777764 5666677887763
No 45
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=93.39 E-value=0.56 Score=45.43 Aligned_cols=132 Identities=19% Similarity=0.309 Sum_probs=81.0
Q ss_pred eeEEEe-ccee-EEEeeEEecc-----------cccccceeEEEeccccccceecccccccc----------e-e-eeeC
Q 011125 280 IGVLLR-GQAN-IVTRVHCYNK-----------ATAFGGIGILVKLADAALTRIDNCYLDYT----------G-I-VLED 334 (493)
Q Consensus 280 ~GI~v~-gq~~-ii~gvh~yN~-----------~t~~GG~Gi~~~~~~~~~~rI~ncyldy~----------~-i-v~~d 334 (493)
.|+.+. +..+ ||+++++.+. ....++-+|-+. +.+.-+|+-|-+... + + +-++
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~--~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~ 114 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID--NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKG 114 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE--STEEEEEES-EEEETTS-GGGSSSSSSEEEESS
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE--ecccEEEeccEEeccccccccccCCceEEEEeC
Confidence 366665 4444 8899999983 222344444444 457889999955554 1 1 2346
Q ss_pred CeeEEEEceeeeecceeEEEeec-----ceeeeeEEEeeeccCCCCCCcceEeecCceeeeeeEEEeeecccceeeEeee
Q 011125 335 PVQVHVTNGFFLGDANIVLKSIK-----GRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTA 409 (493)
Q Consensus 335 ~~~~~It~~~flg~a~v~l~~~~-----~~~~g~~I~~N~~~g~~~~gv~iv~~~g~f~~i~~v~vd~n~~~gm~~~~t~ 409 (493)
+-.|.||.|.|.+--...|.... -.-.-+++..|.|.+. ..-.|.+++ |.+..+.+.+.+. ..++|..+. -
T Consensus 115 s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~-~~R~P~~r~-G~~Hv~NN~~~~~-~~y~i~~~~-~ 190 (200)
T PF00544_consen 115 SDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANT-NSRNPRVRF-GYVHVYNNYYYNW-SGYAIGARS-G 190 (200)
T ss_dssp TEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEE-EE-TTEECS-CEEEEES-EEEEE-CSESEEEET-T
T ss_pred CceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECch-hhCCCcccc-cEEEEEEeeeECC-CCEEEEccC-C
Confidence 79999999999986554444431 1115789999999877 334476665 8888888888654 566777665 5
Q ss_pred eEEEeecc
Q 011125 410 GKLSVAGN 417 (493)
Q Consensus 410 ~r~~~~gn 417 (493)
|++.+++|
T Consensus 191 a~v~~E~N 198 (200)
T PF00544_consen 191 AQVLVENN 198 (200)
T ss_dssp EEEEEES-
T ss_pred eEEEEECc
Confidence 67778877
No 46
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=93.17 E-value=3.5 Score=45.85 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 75 SDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 75 T~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
=.-||+||+++-.... ...+||+-+|+|+= .|.+|..+.+++ +.+|
T Consensus 209 f~TIq~AI~a~P~~~~-----------~r~vI~Ik~GvY~E--~V~I~~~k~nItliGdg 255 (509)
T PLN02488 209 YNTVNAAIAAAPEHSR-----------KRFVIYIKTGVYDE--IVRIGSTKPNLTLIGDG 255 (509)
T ss_pred ccCHHHHHHhchhcCC-----------CcEEEEEeCCeeEE--EEEecCCCccEEEEecC
Confidence 4569999987643321 23699999999984 699996666776 4555
No 47
>PLN02432 putative pectinesterase
Probab=93.01 E-value=3.3 Score=43.00 Aligned_cols=194 Identities=13% Similarity=0.222 Sum_probs=98.7
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCcc
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDRH 146 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~~ 146 (493)
++|..| =.-||+||+++-.... ...+|++.+|+|+ ..|.+|..+.+|. +..|. +..
T Consensus 17 ~~Gsg~-f~TIq~Aida~p~~~~-----------~~~~I~I~~G~Y~--E~V~ip~~k~~itl~G~~~---------~~T 73 (293)
T PLN02432 17 QSGKGD-FRKIQDAIDAVPSNNS-----------QLVFIWVKPGIYR--EKVVVPADKPFITLSGTQA---------SNT 73 (293)
T ss_pred CCCCCC-ccCHHHHHhhccccCC-----------ceEEEEEeCceeE--EEEEEeccCceEEEEEcCC---------CCe
Confidence 344444 5679999997643221 1369999999996 4699986556775 33331 222
Q ss_pred eEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeeccee--ecceEE-eeeecEEEeeeEEeeecc
Q 011125 147 LIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR--GGGIFV-IDSARIRINNCFFLHFTT 223 (493)
Q Consensus 147 lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~--ggGI~v-~nSq~v~I~NC~~~~fnT 223 (493)
.|...+... ..++.+.. ....+..+++|.+-+.+. +..+.+ +++.+..|.||.+.++-
T Consensus 74 vI~~~~~~~--~~~saT~~----------------v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~Q- 134 (293)
T PLN02432 74 IITWNDGGD--IFESPTLS----------------VLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQ- 134 (293)
T ss_pred EEEecCCcc--cccceEEE----------------EECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEeccc-
Confidence 343221110 00000011 111233444555554442 233433 34667999999999872
Q ss_pred CcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cC-CceeeeEEEeecc--eeEEE-ec-----c--eeEE
Q 011125 224 QGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SN-DNAITDVTIFSAA--IGVLL-RG-----Q--ANIV 291 (493)
Q Consensus 224 DGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gN-d~~ItD~~i~sa~--~GI~v-~g-----q--~~ii 291 (493)
|=+..+.+ --+..+|+|..+. |.. |+ ....-+|.|.+-+ .|... .+ + ++++
T Consensus 135 DTLy~~~g-r~yf~~c~I~G~V----------------DFIFG~g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf 197 (293)
T PLN02432 135 DTLLDDTG-RHYYRNCYIEGAT----------------DFICGNAASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTF 197 (293)
T ss_pred ceeEECCC-CEEEEeCEEEecc----------------cEEecCceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEE
Confidence 22223333 4578888887332 222 33 2244555555421 23222 11 1 4567
Q ss_pred EeeEEecccccccceeEEEeccc--cccceecccccc
Q 011125 292 TRVHCYNKATAFGGIGILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 292 ~gvh~yN~~t~~GG~Gi~~~~~~--~~~~rI~ncyld 326 (493)
.+|++... | -.||-||= .+..=+.||||+
T Consensus 198 ~~c~itg~----g--~~yLGRpW~~~srvvf~~t~l~ 228 (293)
T PLN02432 198 LGCKLTGA----G--TTYLGRPWGPYSRVVFALSYMS 228 (293)
T ss_pred EeeEEccc----c--hhhccCCCCCccEEEEEecccC
Confidence 77776521 2 34666553 455556667665
No 48
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=92.46 E-value=4.2 Score=45.75 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=35.7
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
+||..| =.-||+||+++-...... .+..+||+.+|+|+ ..|.+|..+.+++ +.+|
T Consensus 256 ~dGsG~-f~TIq~Av~a~p~~~~~~--------~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g 311 (566)
T PLN02713 256 QNGTGN-FTTINDAVAAAPNNTDGS--------NGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDG 311 (566)
T ss_pred CCCCCC-CCCHHHHHHhhhcccCCC--------CceEEEEEcCcEEE--EEEEecCCCceEEEEecC
Confidence 344444 457999998764321101 13469999999998 3699996666776 4555
No 49
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=92.16 E-value=5.4 Score=44.60 Aligned_cols=52 Identities=23% Similarity=0.370 Sum_probs=35.2
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
+||..| =.-||+||+++-.... ...+||+-+|+|+ ..|.+|..+.++. +.+|
T Consensus 224 ~dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g 276 (530)
T PLN02933 224 IDGTGN-FTTINEAVSAAPNSSE-----------TRFIIYIKGGEYF--ENVELPKKKTMIMFIGDG 276 (530)
T ss_pred CCCCCC-ccCHHHHHHhchhcCC-----------CcEEEEEcCceEE--EEEEecCCCceEEEEEcC
Confidence 344444 4579999997643221 2369999999998 3699996666776 4444
No 50
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=92.12 E-value=3.9 Score=45.73 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 75 SDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 75 T~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
=.-||+||+++-.... ...+||+.+|+|+ ..|.+|..+.+++ +.+|
T Consensus 242 f~TIq~Ai~a~p~~~~-----------~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g 288 (541)
T PLN02416 242 FSTITDAINFAPNNSN-----------DRIIIYVREGVYE--ENVEIPIYKTNIVLIGDG 288 (541)
T ss_pred ccCHHHHHHhhhhcCC-----------ceEEEEEeCceeE--EEEecCCCCccEEEEecC
Confidence 4579999987643321 2368999999997 4688886566776 4455
No 51
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=91.99 E-value=10 Score=42.65 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=35.0
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
||..| =.-||+||+++-.... ...+||+-+|+|+= .|.+|..+.+++ +.+|
T Consensus 243 dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~G~Y~E--~V~i~~~k~~i~l~G~g 294 (548)
T PLN02301 243 DGSGK-YKTVKEAVASAPDNSK-----------TRYVIYVKKGTYKE--NVEIGKKKKNLMLVGDG 294 (548)
T ss_pred CCCCC-cccHHHHHHhhhhcCC-----------ceEEEEEeCceeeE--EEEecCCCceEEEEecC
Confidence 44443 5679999987643321 23699999999984 699986556776 4555
No 52
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=91.82 E-value=5.2 Score=44.79 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=35.2
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
||..| =.-||+||+++-.... +.+..+||+-+|+|+= .|.+|..+.++. +.+|
T Consensus 230 dGsG~-f~TIq~Ai~a~p~~~~---------~~~r~vI~Ik~G~Y~E--~V~i~~~k~~i~l~G~g 283 (539)
T PLN02995 230 DGSGH-FNTVQAAIDVAGRRKV---------TSGRFVIYVKRGIYQE--NINVRLNNDDIMLVGDG 283 (539)
T ss_pred CCCCC-ccCHHHHHHhcccccC---------CCceEEEEEeCCEeEE--EEEecCCCCcEEEEEcC
Confidence 44443 4579999987632110 1134799999999984 599996667786 5555
No 53
>PLN02197 pectinesterase
Probab=91.77 E-value=5.3 Score=45.20 Aligned_cols=51 Identities=24% Similarity=0.422 Sum_probs=34.8
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
||..| =.-||+||+++-.... ...+||+-+|+|+ ..+.+|..+.+++ +.+|
T Consensus 282 dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~GvY~--E~V~I~~~k~ni~l~G~g 333 (588)
T PLN02197 282 DGSGQ-FKTISQAVMACPDKNP-----------GRCIIHIKAGIYN--EQVTIPKKKNNIFMFGDG 333 (588)
T ss_pred CCCCC-cCCHHHHHHhccccCC-----------ceEEEEEeCceEE--EEEEccCCCceEEEEEcC
Confidence 44444 4579999987643321 2368999999998 3699996666776 4555
No 54
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=91.59 E-value=6.2 Score=44.74 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=34.5
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
||..| =.-||+||+++-.... ...+||+.+|+|+= .|..|..+.+++ +.+|
T Consensus 292 dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~GvY~E--~V~I~~~k~~i~l~G~g 343 (596)
T PLN02745 292 DGSGN-FTTISDALAAMPAKYE-----------GRYVIYVKQGIYDE--TVTVDKKMVNVTMYGDG 343 (596)
T ss_pred CCCCC-cccHHHHHHhccccCC-----------ceEEEEEeCCeeEE--EEEEcCCCceEEEEecC
Confidence 34433 4679999987643221 23699999999984 589986566776 4455
No 55
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=91.38 E-value=1.8 Score=40.29 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=63.7
Q ss_pred CcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccC-CceeeeEEEeecce-eEEEecc-e-eEEEeeEEecc
Q 011125 224 QGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASN-DNAITDVTIFSAAI-GVLLRGQ-A-NIVTRVHCYNK 299 (493)
Q Consensus 224 DGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gN-d~~ItD~~i~sa~~-GI~v~gq-~-~ii~gvh~yN~ 299 (493)
.||+...++...|+++.+.... ..|+.+... +..+.+. ... ++++.+. . .++.++.+...
T Consensus 113 ~~i~~~~~~~~~i~nv~~~~~~------------~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
T PF12708_consen 113 NGIRFNSSQNVSISNVRIENSG------------GDGIYFNTGTDYRIIGS----THVSGIFIDNGSNNVIVNNCIFNGG 176 (225)
T ss_dssp EEEEETTEEEEEEEEEEEES-S------------S-SEEEECCEECEEECC----EEEEEEEEESCEEEEEEECEEEESS
T ss_pred eEEEEEeCCeEEEEeEEEEccC------------ccEEEEEccccCcEeec----ccceeeeeccceeEEEECCccccCC
Confidence 6899999999999999986322 223444411 1122221 233 6777653 2 33466666655
Q ss_pred cccccceeEEEeccccccceeccccccc---ceeeeeCCeeEEEEceeeee
Q 011125 300 ATAFGGIGILVKLADAALTRIDNCYLDY---TGIVLEDPVQVHVTNGFFLG 347 (493)
Q Consensus 300 ~t~~GG~Gi~~~~~~~~~~rI~ncyldy---~~iv~~d~~~~~It~~~flg 347 (493)
. .|++... .+-.|.||+.+- ++|.+++..++.|.++.|.+
T Consensus 177 ~-----~g~~~~~---~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~ 219 (225)
T PF12708_consen 177 D-----NGIILGN---NNITISNNTFEGNCGNGINIEGGSNIIISNNTIEN 219 (225)
T ss_dssp S-----CSEECEE---EEEEEECEEEESSSSESEEEEECSEEEEEEEEEES
T ss_pred C-----ceeEeec---ceEEEEeEEECCccceeEEEECCeEEEEEeEEEEC
Confidence 3 3343331 466789998865 59999999999999999885
No 56
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=91.24 E-value=5.2 Score=44.76 Aligned_cols=51 Identities=29% Similarity=0.372 Sum_probs=34.6
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
||..| =.-||+||+++-.... +..+||+.+|+|+= .|.+|..+.+++ +.+|
T Consensus 239 dGsG~-f~TIq~Av~a~p~~~~-----------~r~vI~Vk~GvY~E--~V~I~~~k~~i~l~G~g 290 (537)
T PLN02506 239 DGSGH-YRTITEAINEAPNHSN-----------RRYIIYVKKGVYKE--NIDMKKKKTNIMLVGDG 290 (537)
T ss_pred CCCCC-ccCHHHHHHhchhcCC-----------CcEEEEEeCCeeeE--EEeccCCCceEEEEEcC
Confidence 44444 4579999987643221 34799999999974 588886566776 4445
No 57
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=91.10 E-value=5.5 Score=44.81 Aligned_cols=51 Identities=29% Similarity=0.344 Sum_probs=34.7
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
||..| =.-||+|++++-.... ...+||+.+|+|+ ..|.+|..+.+++ +.+|
T Consensus 265 dGsg~-f~tI~~Av~a~p~~~~-----------~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g 316 (565)
T PLN02468 265 DGSGK-YKTISEALKDVPEKSE-----------KRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDG 316 (565)
T ss_pred CCCCC-ccCHHHHHHhchhcCC-----------CcEEEEEeCCceE--EEEEecCCCCeEEEEecC
Confidence 44444 3679999987643322 2369999999998 4699985556776 4555
No 58
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=91.05 E-value=4.9 Score=45.40 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=34.8
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
||..| =.-||+||+++-.... ...+||+-+|+|+= -+.+|..+.+++ +.+|
T Consensus 282 dGsG~-f~TI~~Av~a~p~~~~-----------~r~vI~ik~GvY~E--~V~i~~~k~ni~l~Gdg 333 (587)
T PLN02313 282 DGSGD-FTTVAAAVAAAPEKSN-----------KRFVIHIKAGVYRE--NVEVTKKKKNIMFLGDG 333 (587)
T ss_pred CCCCC-CccHHHHHHhccccCC-----------ceEEEEEeCceeEE--EEEeCCCCCeEEEEecC
Confidence 34433 4579999987643221 23699999999984 588886566776 5556
No 59
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=91.04 E-value=5.5 Score=45.72 Aligned_cols=203 Identities=12% Similarity=0.181 Sum_probs=103.9
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCCeEEecCCCCCCcce
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGGTLRASDTFPSDRHL 147 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~GTLkAs~~Fpgd~~l 147 (493)
||..| =.-||+||+++-.... ...+||+-+|+|+= .|.+|..+.+++ +.+|. +...
T Consensus 257 dGsG~-f~TIq~Av~a~P~~~~-----------~r~vI~Ik~GvY~E--~V~I~~~k~~i~l~Gdg~---------~~Ti 313 (670)
T PLN02217 257 DGSGQ-YKTINEALNFVPKKKN-----------TTFVVHIKAGIYKE--YVQVNRSMTHLVFIGDGP---------DKTV 313 (670)
T ss_pred CCCCC-ccCHHHHHHhccccCC-----------ceEEEEEeCCceEE--EEEEcCCCCcEEEEecCC---------CCeE
Confidence 44433 4579999987643221 23699999999974 699985556775 45552 1223
Q ss_pred EEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeeccee---ecceEE-eeeecEEEeeeEEeeecc
Q 011125 148 IELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR---GGGIFV-IDSARIRINNCFFLHFTT 223 (493)
Q Consensus 148 I~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~---ggGI~v-~nSq~v~I~NC~~~~fnT 223 (493)
|...... .+|. +++.. ++- ...-.+...++|.|-+.+. ...+.+ +++.+..|.||.|.++-+
T Consensus 314 It~~~~~---~dg~--~T~~S---AT~------~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD 379 (670)
T PLN02217 314 ISGSKSY---KDGI--TTYKT---ATV------AIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQD 379 (670)
T ss_pred EEcCCcc---CCCC--Cccce---EEE------EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccc
Confidence 3321100 0110 01100 000 0011122334444444432 233443 346779999999998722
Q ss_pred CcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEc-cCCc-eeeeEEEeecc----eeEEEe-------cc--e
Q 011125 224 QGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDN-AITDVTIFSAA----IGVLLR-------GQ--A 288 (493)
Q Consensus 224 DGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~-gNd~-~ItD~~i~sa~----~GI~v~-------gq--~ 288 (493)
=+..+. .--|.++|+|.... |.. ||.- ..-+|.|..-. ..-.+. +| +
T Consensus 380 -TLy~~~-~Rqyy~~C~I~GtV----------------DFIFG~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tG 441 (670)
T PLN02217 380 -TLYAHS-HRQFYRDCTISGTI----------------DFLFGDAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTG 441 (670)
T ss_pred -hhccCC-CcEEEEeCEEEEec----------------cEEecCceEEEEccEEEEccCCCCCceeEecCCCCCCCCCce
Confidence 122222 24588999997332 222 4422 33455555421 111222 22 5
Q ss_pred eEEEeeEEeccccccc--ce-eEEEeccc--cccceecccccc
Q 011125 289 NIVTRVHCYNKATAFG--GI-GILVKLAD--AALTRIDNCYLD 326 (493)
Q Consensus 289 ~ii~gvh~yN~~t~~G--G~-Gi~~~~~~--~~~~rI~ncyld 326 (493)
++|.+|++........ +. -.||-||= .+.+=+.+|||+
T Consensus 442 fvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~ 484 (670)
T PLN02217 442 FVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIP 484 (670)
T ss_pred EEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccC
Confidence 6888888876432211 22 35777764 677778888887
No 60
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=90.69 E-value=7.5 Score=44.00 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=35.0
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
||..| =.-||+||+++-.... ...+||+.+|+|+= +-|.+|..+.+++ +.+|
T Consensus 279 dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~G~Y~E-~~v~i~~~k~ni~l~G~g 331 (587)
T PLN02484 279 DGNGT-FKTISEAIKKAPEHSS-----------RRTIIYVKAGRYEE-NNLKVGRKKTNLMFIGDG 331 (587)
T ss_pred CCCCC-cccHHHHHHhccccCC-----------CcEEEEEeCCEEEE-EEEEECCCCceEEEEecC
Confidence 44444 4569999997643221 23799999999974 2488886666776 4455
No 61
>PLN02671 pectinesterase
Probab=90.59 E-value=11 Score=40.23 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=33.8
Q ss_pred CCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee
Q 011125 68 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV 129 (493)
Q Consensus 68 ptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~ 129 (493)
++|..| =.-||+||+++-.... ...+|++-+|+|+ ..|.+|..+.+|.
T Consensus 65 ~dGsGd-f~TIQ~AIdavP~~~~-----------~~~~I~Ik~GvY~--EkV~I~~~k~~It 112 (359)
T PLN02671 65 KNGGGD-SLTVQGAVDMVPDYNS-----------QRVKIYILPGIYR--EKVLVPKSKPYIS 112 (359)
T ss_pred CCCCCC-ccCHHHHHHhchhcCC-----------ccEEEEEeCceEE--EEEEECCCCCeEE
Confidence 455555 5679999997643221 2369999999998 4699986666775
No 62
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=90.55 E-value=1.1 Score=49.99 Aligned_cols=111 Identities=16% Similarity=0.318 Sum_probs=71.9
Q ss_pred CccccceeeeeeEeeccee--ecceEEeeeecEEEeeeEEeeeccCcEEEeee------------eeEEEeeeeeeeccc
Q 011125 181 RTYYEDITFRDVLFDSGFR--GGGIFVIDSARIRINNCFFLHFTTQGILVQRG------------HETFISSCFLGQRST 246 (493)
Q Consensus 181 ~~~~~~IT~~~lv~D~n~~--ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~s------------~~v~Isns~ig~~~t 246 (493)
.+.|++++++++.++.+.. -.|+..-.++.+.|++|+|.. .+|.|-+.++ +++.|++|++....
T Consensus 266 ~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~gh- 343 (542)
T COG5434 266 PVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGH- 343 (542)
T ss_pred eecccCceecceEEECCCCCCCCccccccceeEEEeccEEec-CCceEEeecccCCcccccccccccEEEecceecccc-
Confidence 4578899999999998754 478888889999999999986 8899988776 34667777765211
Q ss_pred cCCCCCccccceEEEEEccC--CceeeeEEEeecceeEEEe---cceeEEEeeEEecccc
Q 011125 247 VGGDPGEKGFSGTAIDLASN--DNAITDVTIFSAAIGVLLR---GQANIVTRVHCYNKAT 301 (493)
Q Consensus 247 ~ggd~~e~~f~gtGI~l~gN--d~~ItD~~i~sa~~GI~v~---gq~~ii~gvh~yN~~t 301 (493)
|+. =.|-++.|- +=+++||++.....|+.|. +.+=.++++++...+.
T Consensus 344 -G~~-------v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI~~~~~~~ 395 (542)
T COG5434 344 -GGL-------VLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKM 395 (542)
T ss_pred -cce-------EeeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEEEEEecccc
Confidence 010 011122211 1167777777767777664 3333466665555543
No 63
>PLN02314 pectinesterase
Probab=90.50 E-value=8.2 Score=43.64 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 75 SDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 75 T~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
=.-||+|++++-.... ...+||+-+|+|+ ..|.+|..+.+++ +.+|
T Consensus 290 f~TI~~Av~a~p~~~~-----------~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g 336 (586)
T PLN02314 290 VKTINEAVASIPKKSK-----------SRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDG 336 (586)
T ss_pred ccCHHHHHhhccccCC-----------ceEEEEEcCceEE--EEEEecCCCceEEEEecC
Confidence 4459999987543221 2369999999998 4688985556776 4555
No 64
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=90.43 E-value=14 Score=38.91 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=58.3
Q ss_pred EEEeeeEEeeeccCcEEEee---eeeEEEeeeeeeeccccCCCCCccccceEEEEEccC--Cc------eeeeEEEe---
Q 011125 211 IRINNCFFLHFTTQGILVQR---GHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASN--DN------AITDVTIF--- 276 (493)
Q Consensus 211 v~I~NC~~~~fnTDGI~V~~---s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gN--d~------~ItD~~i~--- 276 (493)
.+|.||.|.+.-.|.|+-.- -+++.|++-.|.+..-..| +-+-|.||-+.|+ || +|.+.++.
T Consensus 179 aritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctng----kinwgigiglagstydn~ype~q~vknfvvanit 254 (464)
T PRK10123 179 ANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNG----KINWGIGIGLAGSTYDNNYPEDQAVKNFVVANIT 254 (464)
T ss_pred ceeeccccccccCceEEEEEEecccceeeehheheeecccCC----cccceeeeeeccccccCCCchhhhhhhEEEEecc
Confidence 78899999988888776543 3577777777776654333 2245788888865 55 45444443
Q ss_pred --ecceeEEEe-cceeEEEeeEEecccccc
Q 011125 277 --SAAIGVLLR-GQANIVTRVHCYNKATAF 303 (493)
Q Consensus 277 --sa~~GI~v~-gq~~ii~gvh~yN~~t~~ 303 (493)
-++.=|+|. |.-++|++++.-|+.--|
T Consensus 255 gs~crqlvhvengkhfvirnvkaknitpdf 284 (464)
T PRK10123 255 GSDCRQLIHVENGKHFVIRNIKAKNITPDF 284 (464)
T ss_pred CcChhheEEecCCcEEEEEeeeccccCCCc
Confidence 123445664 448899999988875444
No 65
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=90.12 E-value=7.6 Score=43.80 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=34.6
Q ss_pred CCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 69 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 69 tG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
||..| =.-||+||+++-.... ...+||+.+|+|+= .|.+|..+.+++ +.+|
T Consensus 266 dGsG~-f~TIq~Av~a~p~~~~-----------~r~vI~Ik~GvY~E--~V~i~~~k~~i~l~G~g 317 (572)
T PLN02990 266 DGSGQ-YKTINEALNAVPKANQ-----------KPFVIYIKQGVYNE--KVDVTKKMTHVTFIGDG 317 (572)
T ss_pred CCCCC-CcCHHHHHhhCcccCC-----------ceEEEEEeCceeEE--EEEecCCCCcEEEEecC
Confidence 44443 4569999997633221 23699999999983 699996666776 4555
No 66
>PLN02304 probable pectinesterase
Probab=89.64 E-value=13 Score=40.08 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=35.6
Q ss_pred CCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125 67 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG 133 (493)
Q Consensus 67 dptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G 133 (493)
++||..| =.-||+||+++-.... ...+|++-+|+|+ ..|.+|..+.++. +.+|
T Consensus 80 a~dGsGd-f~TIQ~AIdavP~~~~-----------~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g 133 (379)
T PLN02304 80 DPNGCCN-FTTVQSAVDAVGNFSQ-----------KRNVIWINSGIYY--EKVTVPKTKPNITFQGQG 133 (379)
T ss_pred CCCCCCC-ccCHHHHHhhCcccCC-----------CcEEEEEeCeEeE--EEEEECCCCCcEEEEecC
Confidence 4556555 4579999997543221 2368999999997 3688986566775 4444
No 67
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=88.91 E-value=9.6 Score=36.94 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=36.2
Q ss_pred eecceEEeeeecEEEeeeEEeee--------ccCcEEEee-eeeEEEeeeeeeeccc
Q 011125 199 RGGGIFVIDSARIRINNCFFLHF--------TTQGILVQR-GHETFISSCFLGQRST 246 (493)
Q Consensus 199 ~ggGI~v~nSq~v~I~NC~~~~f--------nTDGI~V~~-s~~v~Isns~ig~~~t 246 (493)
..++|.+.++..++||.|.+..- .+.-+.+.. +.++.|++|.+.+|..
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k 130 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNK 130 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEE
T ss_pred CCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhcccccc
Confidence 45778888999999999999877 444477764 7999999999999864
No 68
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=86.12 E-value=12 Score=40.35 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=62.7
Q ss_pred EEEeeeEEeeec-cCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCceeeeEEEeecceeEEEeccee
Q 011125 211 IRINNCFFLHFT-TQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQAN 289 (493)
Q Consensus 211 v~I~NC~~~~fn-TDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~~ItD~~i~sa~~GI~v~gq~~ 289 (493)
+.|.||.|.+-. -.|+.+.....+.|.+|.+-. |.|+.|++.+ +..
T Consensus 123 VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~g------------f~g~cl~~~~-~~~-------------------- 169 (386)
T PF01696_consen 123 VTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFG------------FHGTCLESWA-GGE-------------------- 169 (386)
T ss_pred eEEEEEEEecCCccceeEEEecceEEEEeeEEec------------CcceeEEEcC-CcE--------------------
Confidence 778888777665 667777777777788877641 3355555442 123
Q ss_pred EEEeeEEecccccccceeEEEeccccccceecccccccc--eeeeeCCeeEEEEceeeeecc-eeEEEeecceeeeeEEE
Q 011125 290 IVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYT--GIVLEDPVQVHVTNGFFLGDA-NIVLKSIKGRISGLTIV 366 (493)
Q Consensus 290 ii~gvh~yN~~t~~GG~Gi~~~~~~~~~~rI~ncyldy~--~iv~~d~~~~~It~~~flg~a-~v~l~~~~~~~~g~~I~ 366 (493)
++|++||.+-.++-+.| .+.-++++|..+== +|+.+.+ ..|+.|.|.... -++++.+ ..|.
T Consensus 170 -VrGC~F~~C~~gi~~~~-------~~~lsVk~C~FekC~igi~s~G~--~~i~hn~~~ec~Cf~l~~g~------g~i~ 233 (386)
T PF01696_consen 170 -VRGCTFYGCWKGIVSRG-------KSKLSVKKCVFEKCVIGIVSEGP--ARIRHNCASECGCFVLMKGT------GSIK 233 (386)
T ss_pred -EeeeEEEEEEEEeecCC-------cceEEeeheeeeheEEEEEecCC--eEEecceecccceEEEEccc------EEEe
Confidence 56666666544433333 23333344411111 5555554 345566665533 3444444 4567
Q ss_pred eeeccCC
Q 011125 367 ENMFNGS 373 (493)
Q Consensus 367 ~N~~~g~ 373 (493)
+|||-+.
T Consensus 234 ~N~v~~~ 240 (386)
T PF01696_consen 234 HNMVCGP 240 (386)
T ss_pred ccEEeCC
Confidence 7777755
No 69
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=85.95 E-value=27 Score=37.56 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=14.9
Q ss_pred ccCcEEEeeeeeEEEeeeeee
Q 011125 222 TTQGILVQRGHETFISSCFLG 242 (493)
Q Consensus 222 nTDGI~V~~s~~v~Isns~ig 242 (493)
|.-||.++.+..+.|...+|.
T Consensus 119 n~~Gi~l~~s~d~~i~~n~i~ 139 (408)
T COG3420 119 NSFGIYLHGSADVRIEGNTIQ 139 (408)
T ss_pred cceEEEEeccCceEEEeeEEe
Confidence 566777777777777777665
No 70
>smart00656 Amb_all Amb_all domain.
Probab=84.91 E-value=14 Score=35.68 Aligned_cols=132 Identities=16% Similarity=0.239 Sum_probs=83.3
Q ss_pred eeEEEeccee-EEEeeEEeccccc--ccceeEEEeccccccceecccccccc-----------e--eeeeCCeeEEEEce
Q 011125 280 IGVLLRGQAN-IVTRVHCYNKATA--FGGIGILVKLADAALTRIDNCYLDYT-----------G--IVLEDPVQVHVTNG 343 (493)
Q Consensus 280 ~GI~v~gq~~-ii~gvh~yN~~t~--~GG~Gi~~~~~~~~~~rI~ncyldy~-----------~--iv~~d~~~~~It~~ 343 (493)
.|+.+.+..| ||+++++.+.... .++-+|.+. +.+.-+|+-|-+... + .+-+....+.|+.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~--~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~ 109 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID--GSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNN 109 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe--CCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECc
Confidence 4555654433 8899999887553 367888875 468889999944442 1 11244588999999
Q ss_pred eeeecceeEEEeec-ce----eeeeEEEeeeccCCCCCCcceEeecCceeeeeeEEEeeecccceeeEeeeeEEEeecc
Q 011125 344 FFLGDANIVLKSIK-GR----ISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGN 417 (493)
Q Consensus 344 ~flg~a~v~l~~~~-~~----~~g~~I~~N~~~g~~~~gv~iv~~~g~f~~i~~v~vd~n~~~gm~~~~t~~r~~~~gn 417 (493)
.|.+-..-.|-... .. ...+++.+|.|.+. ..-.|-+++ |.+....+++.+ ..-.+|..+ .-+++.+++|
T Consensus 110 ~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~-~~R~P~~r~-g~~hv~NN~~~n-~~~~~~~~~-~~~~v~~E~N 184 (190)
T smart00656 110 YFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL-RQRAPRVRF-GYVHVYNNYYTG-WTSYAIGGR-MGATILSEGN 184 (190)
T ss_pred eEecCCEEEEEccCCCccccccceEEEECcEEcCc-ccCCCcccC-CEEEEEeeEEeC-cccEeEecC-CCcEEEEECe
Confidence 99886665554431 11 23589999999876 333355554 577777776643 323455544 2445666666
No 71
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=84.14 E-value=13 Score=39.67 Aligned_cols=161 Identities=15% Similarity=0.184 Sum_probs=81.1
Q ss_pred eccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-E----eCCeE
Q 011125 61 PIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-V----QGGTL 135 (493)
Q Consensus 61 V~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i----~~GTL 135 (493)
|..-||++ |.=.-||+|+++|....+. -...|.+-+|.|. ..+..|.--|.|. . .+++.
T Consensus 84 vvsa~a~G----~~f~TIQaAvdaA~~~~~~----------kr~yI~vk~GvY~--e~v~Vp~~~~~ITLyGed~~~~~t 147 (405)
T COG4677 84 VVSAGAQG----VTFTTIQAAVDAAIIKRTN----------KRQYIAVKAGVYQ--ETVYVPAAPGGITLYGEDEKPIDT 147 (405)
T ss_pred EEecCCCc----cchHHHHHHHhhhcccCCC----------ceEEEEEccceec--eeEEecCCCCceeEEecCCCCcce
Confidence 33445444 5557799999987533220 1258889999996 4688882112342 1 11221
Q ss_pred E--ecCCC-CCCcceEEeccCCCcccccccceeecc--ceeecccccCcCCccccceeeeeeEeecceee--cceEE-ee
Q 011125 136 R--ASDTF-PSDRHLIELWAPNSQKLKRTDAIKIDR--NYVFNDVKDQTARTYYEDITFRDVLFDSGFRG--GGIFV-ID 207 (493)
Q Consensus 136 k--As~~F-pgd~~lI~~~~~n~~~i~G~~~GtlDg--~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~g--gGI~v-~n 207 (493)
+ +..+- |+...|.......+... .+.|++-. .|. +++...|+.+|+++-.-|+.+.+ -.+.+ .+
T Consensus 148 vIg~n~aagp~np~~~m~n~c~ss~~--~tigt~~Sat~~v------~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~d 219 (405)
T COG4677 148 VIGLNLAAGPGNPAGYMYNSCQSSRS--ATIGTLCSATFWV------QNNDFQLQNLTIENTLGDGVLAGNHPAVALATD 219 (405)
T ss_pred EEEEecCCCCCCccceeecccccchh--hhhhhhhhhhhee------ecCCcccccceeecccCCccccCCceeEEEEec
Confidence 1 11111 22322332222111000 01122211 232 34467888888887777777665 33333 34
Q ss_pred eecEEEeeeEEeee------ccCcEEE----eeeeeEEEeeeeeeecc
Q 011125 208 SARIRINNCFFLHF------TTQGILV----QRGHETFISSCFLGQRS 245 (493)
Q Consensus 208 Sq~v~I~NC~~~~f------nTDGI~V----~~s~~v~Isns~ig~~~ 245 (493)
+.++.|.||...+- .+.|..= ...--.|.+||+|..+.
T Consensus 220 gDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~Gdv 267 (405)
T COG4677 220 GDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDV 267 (405)
T ss_pred CCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccc
Confidence 66799999988875 2222111 11224567777777543
No 72
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=80.55 E-value=4.4 Score=41.09 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=24.8
Q ss_pred eeecceEEeeeecEEEeeeEEeeeccCcEEEeee
Q 011125 198 FRGGGIFVIDSARIRINNCFFLHFTTQGILVQRG 231 (493)
Q Consensus 198 ~~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~s 231 (493)
+++.|+++..+ ...|.||.|.+...+||.+...
T Consensus 112 ~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~ 144 (246)
T PF07602_consen 112 ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGT 144 (246)
T ss_pred CcceEEEEecC-CcEEEeeEEECCccccEEEEee
Confidence 47777755444 7888899888888888888554
No 73
>smart00656 Amb_all Amb_all domain.
Probab=80.50 E-value=57 Score=31.44 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=26.6
Q ss_pred ecceEEeeeecEEEeeeEEeee------ccCcEEEeeeeeEEEeeeeeee
Q 011125 200 GGGIFVIDSARIRINNCFFLHF------TTQGILVQRGHETFISSCFLGQ 243 (493)
Q Consensus 200 ggGI~v~nSq~v~I~NC~~~~f------nTDGI~V~~s~~v~Isns~ig~ 243 (493)
+.|+++..+..+-|.|..+... +.|+|.++.++.+-|..|.+..
T Consensus 31 g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~ 80 (190)
T smart00656 31 GGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSG 80 (190)
T ss_pred eeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEc
Confidence 3445555444555555555543 4477777777777777777763
No 74
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=79.37 E-value=12 Score=40.81 Aligned_cols=90 Identities=16% Similarity=0.253 Sum_probs=47.9
Q ss_pred EEEEc-cCCceeeeEEEeecc-----eeEEEecceeEEEeeEEeccccc-c-cceeE-EEe------------ccccccc
Q 011125 260 AIDLA-SNDNAITDVTIFSAA-----IGVLLRGQANIVTRVHCYNKATA-F-GGIGI-LVK------------LADAALT 318 (493)
Q Consensus 260 GI~l~-gNd~~ItD~~i~sa~-----~GI~v~gq~~ii~gvh~yN~~t~-~-GG~Gi-~~~------------~~~~~~~ 318 (493)
+|.+. ||.+.|.+=.|.|.. .||.|-|+.-+|.++.+++++.. + ++..+ ++. .+-+..+
T Consensus 238 ~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~N 317 (425)
T PF14592_consen 238 SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANN 317 (425)
T ss_dssp EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-
T ss_pred eEEEecCCCceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecc
Confidence 47777 999999999999753 59999999888999999998543 3 22221 111 1225677
Q ss_pred eecccc--cccc--------------eeeeeCCeeEEEEceeeeecc
Q 011125 319 RIDNCY--LDYT--------------GIVLEDPVQVHVTNGFFLGDA 349 (493)
Q Consensus 319 rI~ncy--ldy~--------------~iv~~d~~~~~It~~~flg~a 349 (493)
-+.||- +.+- .|+...|.++++.+|.+..+-
T Consensus 318 T~In~~~~i~~g~g~~~~~~~~~~~~~i~s~~p~~~~~~nN~i~~~~ 364 (425)
T PF14592_consen 318 TFINCKSPIHFGAGSDEERKDVLPASNIRSARPINSTFANNIIYNDD 364 (425)
T ss_dssp EEES-SEEEESST-THHHHHHHHHHCT---B---SEEEES-EEE--S
T ss_pred eEEccCCceEEccccccccccccccccccccCCceEEeeCCeEEcCC
Confidence 788884 2222 356778999999999999855
No 75
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=77.70 E-value=52 Score=34.96 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=47.7
Q ss_pred eeeeeEeecceeecceEEeeeecEEEeeeEEeeec-----cCcEEE-eeeeeEEEeeeeeeecc
Q 011125 188 TFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFT-----TQGILV-QRGHETFISSCFLGQRS 245 (493)
Q Consensus 188 T~~~lv~D~n~~ggGI~v~nSq~v~I~NC~~~~fn-----TDGI~V-~~s~~v~Isns~ig~~~ 245 (493)
|+...--|....++|+.+++++.+-|.|..|.+|- -|.|.+ ..+|.+-|.+|++-.++
T Consensus 104 TivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s 167 (345)
T COG3866 104 TIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGS 167 (345)
T ss_pred EEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccc
Confidence 44444456667789999999999999999999994 599999 88999999999987654
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=75.37 E-value=3.7 Score=29.94 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=29.9
Q ss_pred ceEEeeeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeee
Q 011125 202 GIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLG 242 (493)
Q Consensus 202 GI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig 242 (493)
||.+.+|..-.|.++.+.. +.+||++..++...|+++.+.
T Consensus 1 GI~l~~s~~~~i~~N~i~~-~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeC-CCCEEEEEeCCCCEeECCEEE
Confidence 5777778877788887764 444888888888787777764
No 77
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=69.89 E-value=51 Score=35.03 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=89.4
Q ss_pred eeEEEeccee-EEEeeEEecccccccc-eeEEEeccccccceecccccccc----------e--eeeeCCeeEEEEceee
Q 011125 280 IGVLLRGQAN-IVTRVHCYNKATAFGG-IGILVKLADAALTRIDNCYLDYT----------G--IVLEDPVQVHVTNGFF 345 (493)
Q Consensus 280 ~GI~v~gq~~-ii~gvh~yN~~t~~GG-~Gi~~~~~~~~~~rI~ncyldy~----------~--iv~~d~~~~~It~~~f 345 (493)
.|+.++-.+| |||+++|..--.+.+- -.|-+. -+-+..||+.|=|-+. + =+.+|+..|.|+.|-|
T Consensus 117 ~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~-~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~f 195 (345)
T COG3866 117 GGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIY-DDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKF 195 (345)
T ss_pred ceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEec-cCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeee
Confidence 4555553333 6777777655433331 123222 2358889999933331 1 2468889999999999
Q ss_pred eecceeEEEeec------ceeeeeEEEeeeccCCCCCCcceEeecCceeeeeeEEEeeecccceee-EeeeeEEEeeccc
Q 011125 346 LGDANIVLKSIK------GRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSL-KSTAGKLSVAGNG 418 (493)
Q Consensus 346 lg~a~v~l~~~~------~~~~g~~I~~N~~~g~~~~gv~iv~~~g~f~~i~~v~vd~n~~~gm~~-~~t~~r~~~~gng 418 (493)
.......|-... ..-.-++|-+|-|.+- ..-.|.++|- .+. +.+=+-+.+...|... ..|-||+-++.|
T Consensus 196 hdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~-~qR~PriRfG-~vH-vyNNYy~~~~~~g~a~~iG~~AkiyvE~N- 271 (345)
T COG3866 196 HDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL-YQRGPRIRFG-MVH-VYNNYYEGNPKFGVAITIGTSAKIYVENN- 271 (345)
T ss_pred ecCCeeeeeccCCcccccCCceeEEEeccccccc-cccCCceEee-EEE-EeccccccCcccceEEeeccceEEEEecc-
Confidence 987766665531 2334599999999998 5555777664 211 1222333444466664 566778888777
Q ss_pred eEEEEeCCCccccccCccc
Q 011125 419 TKWVADFSPILVFPNRISH 437 (493)
Q Consensus 419 t~w~~df~~~llf~~~i~~ 437 (493)
.--+.++-|-|-+.+..
T Consensus 272 --yF~~~~~~~~f~dt~~~ 288 (345)
T COG3866 272 --YFENGSEGLGFLDTKGT 288 (345)
T ss_pred --eeccCCCCceeeecCCc
Confidence 33334555555544444
No 78
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=63.33 E-value=14 Score=26.92 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=19.0
Q ss_pred CceeeeEEEeecceeEEEecc-eeEEEeeEEecc
Q 011125 267 DNAITDVTIFSAAIGVLLRGQ-ANIVTRVHCYNK 299 (493)
Q Consensus 267 d~~ItD~~i~sa~~GI~v~gq-~~ii~gvh~yN~ 299 (493)
++.|.+-.|.....||.+... .++++++++.+.
T Consensus 9 ~~~i~~N~i~~~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 9 NNTLENNTASNNSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CCEEECcEEeCCCCEEEEEeCCCCEeECCEEEcC
Confidence 445555555555566666544 556666666553
No 79
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=63.04 E-value=37 Score=38.45 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=23.3
Q ss_pred EEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeecc
Q 011125 211 IRINNCFFLHFTTQGILVQRGHETFISSCFLGQRS 245 (493)
Q Consensus 211 v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~ 245 (493)
..|.+|++ +.|+|.|++-++ .+.|++|.|=++.
T Consensus 382 S~i~dcF~-h~nDD~iKlYhS-~v~v~~~ViWk~~ 414 (582)
T PF03718_consen 382 STIRDCFI-HVNDDAIKLYHS-NVSVSNTVIWKNE 414 (582)
T ss_dssp -EEEEEEE-EESS-SEE--ST-TEEEEEEEEEE-S
T ss_pred CeeeeeEE-EecCchhheeec-CcceeeeEEEecC
Confidence 45789954 799999999875 8999999997654
No 80
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=54.09 E-value=2.8e+02 Score=31.11 Aligned_cols=87 Identities=13% Similarity=0.329 Sum_probs=48.3
Q ss_pred CceeeeEEEe-ecceeEEEecceeEEEeeEEecccccccceeEEEeccc--cccceeccc-ccccceeeeeCCeeEEEEc
Q 011125 267 DNAITDVTIF-SAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLAD--AALTRIDNC-YLDYTGIVLEDPVQVHVTN 342 (493)
Q Consensus 267 d~~ItD~~i~-sa~~GI~v~gq~~ii~gvh~yN~~t~~GG~Gi~~~~~~--~~~~rI~nc-yldy~~iv~~d~~~~~It~ 342 (493)
.+.|.+...+ +--.|++.-|+..+++++..|.+ .|.|+|..-.+ +++.-+-+| |+.|+ ..||.|.+
T Consensus 312 nHiidNi~~~~~lGVG~~~DG~~~yvsni~~~d~----~g~G~~~~~~~~~ftNitvId~N~~n~~------~nQI~i~G 381 (549)
T PF09251_consen 312 NHIIDNILVRGSLGVGIGMDGKGGYVSNITVQDC----AGAGIFIRGTNKVFTNITVIDTNTDNFN------ANQIYIEG 381 (549)
T ss_dssp --EEEEEEEES-SSESCEEECCS-EEEEEEEES-----SSESEEEECCS-EEEEEEEES-STT-SS------SECEEE-S
T ss_pred hhhhhhhheeccceeeeeecCCCceEeeEEeecc----cCCceEEeecCCceeeeEEEeccccCCC------CceEEEec
Confidence 4566666666 45677888899888999999999 78999988433 222222233 22222 36777776
Q ss_pred eeeeecc-----------eeEEEeecceeeee
Q 011125 343 GFFLGDA-----------NIVLKSIKGRISGL 363 (493)
Q Consensus 343 ~~flg~a-----------~v~l~~~~~~~~g~ 363 (493)
-..+.-= -.++++-+..++|+
T Consensus 382 ~~~vnGir~igi~~~~~~Gl~I~APnStvS~i 413 (549)
T PF09251_consen 382 ACIVNGIRLIGIKPTPSQGLAIDAPNSTVSGI 413 (549)
T ss_dssp S-EEEEEEE-ECC-STSSSECEEEEEEEEEEE
T ss_pred ceEEcceeEeeeeccCCCceEEECCCCeeecc
Confidence 6555422 23455555556554
No 81
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=32.51 E-value=3.1e+02 Score=23.27 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=25.7
Q ss_pred cceeeeeCCeeEEEEceeee----ecceeEEEeecceeeee
Q 011125 327 YTGIVLEDPVQVHVTNGFFL----GDANIVLKSIKGRISGL 363 (493)
Q Consensus 327 y~~iv~~d~~~~~It~~~fl----g~a~v~l~~~~~~~~g~ 363 (493)
+.||..+......+.+|.+. ++++.+.++....+.+.
T Consensus 93 ~~Gi~~~~~~~~~~~~N~i~~~~~g~G~~~~~~~~~~~~~~ 133 (146)
T smart00722 93 GAGIVVTAGSEGLFIGNRIITNNDGDGNYLSDSSGGDLIGN 133 (146)
T ss_pred eEEEEEECCccceEecCeEEeecCCCCEEEeCCCCcEEEcc
Confidence 55777777766667777776 77877777775555554
No 82
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=31.95 E-value=33 Score=30.13 Aligned_cols=23 Identities=30% Similarity=0.796 Sum_probs=12.9
Q ss_pred EEeeccceEEEEeCCCccccccC
Q 011125 412 LSVAGNGTKWVADFSPILVFPNR 434 (493)
Q Consensus 412 ~~~~gngt~w~~df~~~llf~~~ 434 (493)
+.+...+..|.++.+|.|+||++
T Consensus 92 ~~l~~~~~~W~V~W~ps~I~P~L 114 (118)
T PF05223_consen 92 LTLVKEDDDWKVDWDPSLIFPGL 114 (118)
T ss_dssp EEEEEETTCEEE---GGGTSTT-
T ss_pred EEEEecCCcEEEEeCccCCCCCC
Confidence 33333333499999999999975
No 83
>PF11666 DUF2933: Protein of unknown function (DUF2933); InterPro: IPR021682 This bacterial family of proteins has no known function.
Probab=28.09 E-value=38 Score=27.18 Aligned_cols=13 Identities=62% Similarity=1.121 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhhh
Q 011125 6 ALCFTLLLLCPLL 18 (493)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (493)
.+-|.+||+|||.
T Consensus 23 ~lp~l~lL~CPLm 35 (55)
T PF11666_consen 23 ALPYLLLLACPLM 35 (55)
T ss_pred HHHHHHHHHhHHH
Confidence 3567889999986
No 84
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=27.22 E-value=7.5e+02 Score=26.00 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=30.8
Q ss_pred cccceeeeeeEeecceeecceEEeeeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeee
Q 011125 183 YYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLG 242 (493)
Q Consensus 183 ~~~~IT~~~lv~D~n~~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig 242 (493)
.|.++++++....+.|- .++|+.+.+++....| =-.-|++..+.|+||.|-
T Consensus 116 ~c~~i~l~nv~~~gdYf-----~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~ 166 (277)
T PF12541_consen 116 NCRGIKLKNVQANGDYF-----FMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLD 166 (277)
T ss_pred EeCCeEEEeEEEeceEe-----eeeccceEEeceEEeC----CEEeeceeeEEEEccEEe
Confidence 57777777666655543 4566666666654431 123355677778888774
No 85
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=23.04 E-value=61 Score=26.48 Aligned_cols=42 Identities=26% Similarity=0.458 Sum_probs=26.6
Q ss_pred ChhhHHHHHHHHHhhhhhc-----cccccccccccch-------hhHhhhhhcc
Q 011125 1 MKHLLALCFTLLLLCPLLL-----QETTSISEENMPA-------RLLAKLQVAQ 42 (493)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------~~~~~~~~~~ 42 (493)
||.||-+...|.+..|.+. |..+|.......+ .|+++|+..+
T Consensus 1 mknllkillilafa~pvfassmq~p~pasvtttqi~amst~~qq~wvasltadq 54 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVFASSMQMPDPASVTTTQIQAMSTDDQQAWVASLTADQ 54 (65)
T ss_pred ChhHHHHHHHHHHhhhHhhhcccCCCCcceeHHHHHHhcchhHHHHHHHhhhhh
Confidence 7888888777777777663 3333333322222 8999997654
No 86
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=21.82 E-value=1e+02 Score=18.62 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=14.2
Q ss_pred cEEEeeeEEeeeccCcEEEee
Q 011125 210 RIRINNCFFLHFTTQGILVQR 230 (493)
Q Consensus 210 ~v~I~NC~~~~fnTDGI~V~~ 230 (493)
.+.|.+|.+.+...+||.+..
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~~ 23 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIGG 23 (26)
T ss_pred CEEEECCEEEeCCCCcEEEec
Confidence 466777777776666777643
No 87
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=21.29 E-value=9.7e+02 Score=25.20 Aligned_cols=54 Identities=17% Similarity=0.427 Sum_probs=37.1
Q ss_pred ccccceeeeeeEeecceeecceEEeeeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeee
Q 011125 182 TYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLG 242 (493)
Q Consensus 182 ~~~~~IT~~~lv~D~n~~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig 242 (493)
..|..|.+.+-.|...|- ++-++.+.|.||++.--...||+- ++.+.|.+|.|.
T Consensus 36 Kes~nI~~~~~~F~~KYP-----~Wh~~~~~i~~~~f~~~aRa~iWY--s~~i~m~d~~i~ 89 (277)
T PF12541_consen 36 KESRNIELKNCIFKWKYP-----LWHSDNIKIENCYFTEMARAAIWY--SNNITMKDSVIQ 89 (277)
T ss_pred ccccceEEECCEEeeECc-----eEEECCeEEEeeEEeecceeeeeE--eCCEEEEeeecc
Confidence 345566665555555544 566777888888888777777765 677888888875
Done!