Query 011126
Match_columns 493
No_of_seqs 644 out of 3058
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 2E-52 4.4E-57 427.5 25.7 437 1-491 1-472 (712)
2 KOG0271 Notchless-like WD40 re 100.0 2.7E-34 5.9E-39 269.8 19.4 307 144-493 136-474 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 8.1E-34 1.8E-38 269.9 17.3 238 228-492 210-452 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.4E-32 3.1E-37 258.3 20.8 246 225-493 105-432 (480)
5 KOG0263 Transcription initiati 100.0 1.8E-31 3.9E-36 271.8 21.6 238 234-492 377-641 (707)
6 KOG0272 U4/U6 small nuclear ri 100.0 2E-31 4.3E-36 253.7 17.4 230 236-493 176-411 (459)
7 KOG0273 Beta-transducin family 100.0 1.1E-29 2.3E-34 244.8 26.2 272 182-493 193-475 (524)
8 KOG0279 G protein beta subunit 100.0 3.2E-28 7E-33 220.9 24.3 238 228-492 56-305 (315)
9 KOG0286 G-protein beta subunit 100.0 4E-28 8.7E-33 221.5 25.0 235 229-492 49-295 (343)
10 KOG0279 G protein beta subunit 100.0 5.7E-28 1.2E-32 219.3 23.9 238 228-489 8-252 (315)
11 KOG0645 WD40 repeat protein [G 100.0 6E-28 1.3E-32 218.3 20.3 260 145-459 37-311 (312)
12 KOG0286 G-protein beta subunit 100.0 3E-27 6.4E-32 215.8 23.5 277 167-492 53-337 (343)
13 KOG0265 U5 snRNP-specific prot 100.0 5.2E-27 1.1E-31 215.0 23.3 257 226-493 38-331 (338)
14 KOG0291 WD40-repeat-containing 100.0 1.8E-26 3.8E-31 233.4 25.4 235 230-490 345-602 (893)
15 KOG0263 Transcription initiati 99.9 1.2E-26 2.7E-31 236.6 21.0 231 230-488 446-703 (707)
16 KOG0284 Polyadenylation factor 99.9 2E-27 4.3E-32 225.5 13.4 234 231-492 134-372 (464)
17 KOG0295 WD40 repeat-containing 99.9 2.7E-26 5.8E-31 215.1 19.0 236 230-492 145-398 (406)
18 KOG0273 Beta-transducin family 99.9 5.1E-26 1.1E-30 219.5 21.1 202 228-492 269-515 (524)
19 KOG0315 G-protein beta subunit 99.9 2.5E-25 5.5E-30 199.0 22.7 236 230-492 35-280 (311)
20 KOG0645 WD40 repeat protein [G 99.9 3.1E-25 6.7E-30 200.7 22.1 201 227-492 6-217 (312)
21 KOG0315 G-protein beta subunit 99.9 4.2E-25 9E-30 197.6 21.9 228 227-479 75-309 (311)
22 KOG0285 Pleiotropic regulator 99.9 1.2E-25 2.6E-30 210.1 18.3 235 225-489 141-378 (460)
23 KOG0318 WD40 repeat stress pro 99.9 2.2E-24 4.7E-29 210.7 27.7 237 230-493 185-553 (603)
24 KOG0284 Polyadenylation factor 99.9 1.3E-26 2.9E-31 219.9 11.7 226 237-491 98-328 (464)
25 KOG0295 WD40 repeat-containing 99.9 1.7E-25 3.7E-30 209.7 18.7 245 222-493 92-357 (406)
26 KOG0266 WD40 repeat-containing 99.9 1.3E-24 2.8E-29 225.5 25.8 233 235-493 159-402 (456)
27 KOG0319 WD40-repeat-containing 99.9 3.4E-25 7.4E-30 224.0 20.6 238 231-492 361-611 (775)
28 KOG0266 WD40 repeat-containing 99.9 1.8E-24 3.9E-29 224.4 25.1 238 228-490 196-442 (456)
29 KOG0282 mRNA splicing factor [ 99.9 1.5E-25 3.3E-30 217.0 14.7 238 227-491 206-496 (503)
30 KOG0296 Angio-associated migra 99.9 4.7E-24 1E-28 200.3 24.1 239 225-492 54-390 (399)
31 KOG0291 WD40-repeat-containing 99.9 7.3E-24 1.6E-28 214.6 25.0 229 236-492 308-542 (893)
32 KOG1407 WD40 repeat protein [F 99.9 4E-24 8.7E-29 192.6 20.4 256 230-492 15-294 (313)
33 cd00200 WD40 WD40 domain, foun 99.9 2.8E-23 6E-28 199.2 27.8 234 230-491 4-240 (289)
34 cd00200 WD40 WD40 domain, foun 99.9 3.9E-23 8.4E-28 198.3 27.4 232 233-492 49-283 (289)
35 KOG0276 Vesicle coat complex C 99.9 4.1E-24 8.8E-29 212.3 19.3 236 232-493 10-250 (794)
36 PLN00181 protein SPA1-RELATED; 99.9 1.1E-22 2.3E-27 225.9 31.8 258 230-492 478-785 (793)
37 KOG0276 Vesicle coat complex C 99.9 6.7E-24 1.4E-28 210.8 19.6 226 238-490 58-289 (794)
38 KOG0275 Conserved WD40 repeat- 99.9 3.4E-24 7.5E-29 197.9 16.3 236 236-492 214-459 (508)
39 PTZ00421 coronin; Provisional 99.9 6.2E-23 1.4E-27 212.7 26.7 198 230-490 70-279 (493)
40 KOG0285 Pleiotropic regulator 99.9 1.1E-23 2.4E-28 197.1 16.5 194 278-492 145-341 (460)
41 KOG0293 WD40 repeat-containing 99.9 2.9E-23 6.2E-28 197.5 18.3 259 230-492 219-505 (519)
42 KOG0281 Beta-TrCP (transducin 99.9 1.2E-24 2.7E-29 202.5 8.8 217 242-492 202-420 (499)
43 KOG0292 Vesicle coat complex C 99.9 6E-23 1.3E-27 210.9 20.8 246 220-489 32-311 (1202)
44 KOG0643 Translation initiation 99.9 4.6E-22 9.9E-27 179.9 22.2 241 230-490 5-251 (327)
45 KOG0292 Vesicle coat complex C 99.9 7.5E-23 1.6E-27 210.1 19.4 229 236-492 10-272 (1202)
46 KOG0640 mRNA cleavage stimulat 99.9 1.1E-22 2.4E-27 187.1 18.3 217 230-464 107-340 (430)
47 KOG0318 WD40 repeat stress pro 99.9 7.4E-22 1.6E-26 193.1 24.9 237 231-492 55-342 (603)
48 KOG0641 WD40 repeat protein [G 99.9 2.2E-21 4.7E-26 171.5 25.1 239 236-491 33-294 (350)
49 KOG0310 Conserved WD40 repeat- 99.9 2.8E-22 6.1E-27 194.7 20.8 231 234-492 67-301 (487)
50 KOG0316 Conserved WD40 repeat- 99.9 3.5E-22 7.6E-27 177.6 19.4 249 227-489 9-289 (307)
51 PTZ00421 coronin; Provisional 99.9 1.4E-21 3.1E-26 202.6 26.2 199 236-490 21-231 (493)
52 KOG0283 WD40 repeat-containing 99.9 4.8E-22 1E-26 204.8 20.9 239 230-491 261-567 (712)
53 KOG0288 WD40 repeat protein Ti 99.9 2.6E-22 5.7E-27 191.1 16.9 233 228-492 212-453 (459)
54 KOG0319 WD40-repeat-containing 99.9 9.1E-22 2E-26 199.3 21.7 234 235-492 323-569 (775)
55 KOG0299 U3 snoRNP-associated p 99.9 1.5E-21 3.2E-26 188.4 20.8 228 233-489 200-444 (479)
56 PTZ00420 coronin; Provisional 99.9 5.8E-21 1.2E-25 199.3 26.9 177 253-492 50-236 (568)
57 PTZ00420 coronin; Provisional 99.9 5.7E-21 1.2E-25 199.3 26.6 201 228-492 67-285 (568)
58 KOG0646 WD40 repeat protein [G 99.9 4.7E-21 1E-25 185.3 23.7 263 141-492 14-299 (476)
59 KOG0306 WD40-repeat-containing 99.9 1.1E-21 2.3E-26 198.9 20.2 228 237-492 414-656 (888)
60 KOG0264 Nucleosome remodeling 99.9 2.1E-21 4.5E-26 187.4 20.9 241 234-491 123-394 (422)
61 KOG0313 Microtubule binding pr 99.9 6.7E-22 1.5E-26 186.6 16.7 195 233-492 191-410 (423)
62 KOG1332 Vesicle coat complex C 99.9 1.2E-21 2.5E-26 175.2 16.6 242 231-491 7-277 (299)
63 KOG0308 Conserved WD40 repeat- 99.9 6.4E-22 1.4E-26 197.8 16.6 233 244-493 34-278 (735)
64 KOG0973 Histone transcription 99.9 8.9E-22 1.9E-26 207.6 18.1 208 238-490 16-239 (942)
65 KOG0305 Anaphase promoting com 99.9 5.5E-21 1.2E-25 192.2 22.8 230 235-493 217-454 (484)
66 KOG0289 mRNA splicing factor [ 99.9 1.2E-21 2.6E-26 187.7 17.0 225 241-491 225-453 (506)
67 KOG0296 Angio-associated migra 99.9 7.6E-21 1.7E-25 178.8 21.6 206 241-459 154-398 (399)
68 KOG0281 Beta-TrCP (transducin 99.9 1.4E-22 3E-27 189.0 9.7 244 209-491 207-468 (499)
69 KOG0277 Peroxisomal targeting 99.9 1.3E-21 2.9E-26 175.7 15.3 231 236-491 61-300 (311)
70 KOG0641 WD40 repeat protein [G 99.9 4.5E-20 9.7E-25 163.2 24.4 242 232-493 86-342 (350)
71 KOG0265 U5 snRNP-specific prot 99.9 6.7E-21 1.4E-25 175.0 18.2 192 279-491 42-237 (338)
72 KOG0772 Uncharacterized conser 99.9 3.3E-21 7.2E-26 188.0 16.9 264 221-490 153-429 (641)
73 KOG0278 Serine/threonine kinas 99.9 2.3E-21 5E-26 173.7 14.4 190 234-493 99-290 (334)
74 KOG0973 Histone transcription 99.9 1E-20 2.2E-25 199.7 21.3 251 226-492 60-347 (942)
75 KOG0316 Conserved WD40 repeat- 99.9 1.8E-20 4E-25 166.7 19.2 189 278-491 11-204 (307)
76 KOG0267 Microtubule severing p 99.9 7.2E-22 1.6E-26 199.5 10.9 233 230-490 23-258 (825)
77 KOG0268 Sof1-like rRNA process 99.9 3.5E-21 7.6E-26 180.8 14.2 234 226-493 57-295 (433)
78 KOG0269 WD40 repeat-containing 99.9 4.1E-21 8.8E-26 195.5 14.8 230 241-492 93-332 (839)
79 KOG0313 Microtubule binding pr 99.9 1.9E-20 4.2E-25 176.8 16.9 222 230-492 139-368 (423)
80 KOG0293 WD40 repeat-containing 99.9 4.2E-21 9.1E-26 182.8 12.6 258 174-460 227-514 (519)
81 KOG1446 Histone H3 (Lys4) meth 99.9 3.3E-19 7.1E-24 165.4 24.6 237 234-491 13-296 (311)
82 KOG0647 mRNA export protein (c 99.9 1.6E-19 3.4E-24 166.2 22.2 235 235-490 27-313 (347)
83 KOG0310 Conserved WD40 repeat- 99.8 4.4E-20 9.6E-25 179.5 19.3 234 231-492 22-260 (487)
84 KOG2096 WD40 repeat protein [G 99.8 1.1E-19 2.3E-24 168.2 20.7 243 230-491 81-394 (420)
85 KOG0274 Cdc4 and related F-box 99.8 7.2E-20 1.5E-24 190.4 21.1 225 231-491 245-473 (537)
86 KOG0289 mRNA splicing factor [ 99.8 2E-19 4.4E-24 172.4 21.3 238 227-492 253-498 (506)
87 KOG0277 Peroxisomal targeting 99.8 1.6E-20 3.4E-25 168.9 12.5 204 230-458 99-308 (311)
88 KOG0274 Cdc4 and related F-box 99.8 1.6E-19 3.5E-24 187.8 22.0 222 236-492 209-433 (537)
89 KOG0299 U3 snoRNP-associated p 99.8 1.2E-19 2.5E-24 175.4 17.9 244 228-493 135-403 (479)
90 KOG0270 WD40 repeat-containing 99.8 1.1E-19 2.5E-24 174.8 17.5 258 176-464 188-454 (463)
91 KOG0305 Anaphase promoting com 99.8 2.5E-19 5.3E-24 180.4 20.0 219 241-489 183-406 (484)
92 KOG2445 Nuclear pore complex c 99.8 1.7E-18 3.8E-23 159.7 23.5 244 232-493 10-311 (361)
93 PLN00181 protein SPA1-RELATED; 99.8 9.7E-19 2.1E-23 194.3 26.4 222 256-492 457-682 (793)
94 KOG0282 mRNA splicing factor [ 99.8 3.9E-20 8.5E-25 179.6 12.6 222 227-457 250-503 (503)
95 KOG0264 Nucleosome remodeling 99.8 2.4E-19 5.2E-24 173.2 17.4 213 230-460 172-405 (422)
96 KOG4283 Transcription-coupled 99.8 5.6E-19 1.2E-23 161.9 18.2 213 231-462 39-279 (397)
97 KOG0302 Ribosome Assembly prot 99.8 1.9E-19 4.1E-24 170.0 15.4 202 223-488 199-426 (440)
98 KOG0643 Translation initiation 99.8 7.3E-19 1.6E-23 159.3 18.4 248 217-492 30-309 (327)
99 KOG0306 WD40-repeat-containing 99.8 1.3E-18 2.8E-23 176.7 21.4 255 230-493 102-477 (888)
100 KOG0308 Conserved WD40 repeat- 99.8 4.8E-19 1E-23 177.4 17.4 217 228-461 66-287 (735)
101 KOG0639 Transducin-like enhanc 99.8 3.1E-19 6.7E-24 173.7 15.6 235 234-492 418-655 (705)
102 KOG1408 WD40 repeat protein [F 99.8 7E-19 1.5E-23 177.5 18.6 248 225-493 449-706 (1080)
103 KOG0275 Conserved WD40 repeat- 99.8 2.3E-20 5E-25 172.7 6.9 158 281-493 210-371 (508)
104 KOG1446 Histone H3 (Lys4) meth 99.8 4.8E-18 1E-22 157.7 22.1 195 276-490 6-207 (311)
105 KOG0294 WD40 repeat-containing 99.8 5.3E-18 1.1E-22 157.0 21.2 224 249-492 3-273 (362)
106 KOG0288 WD40 repeat protein Ti 99.8 2.3E-19 4.9E-24 171.2 12.5 235 230-492 170-409 (459)
107 KOG0300 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 161.0 16.1 236 227-482 182-456 (481)
108 KOG0301 Phospholipase A2-activ 99.8 4.2E-18 9E-23 171.9 20.6 215 241-492 64-280 (745)
109 KOG0302 Ribosome Assembly prot 99.8 1.5E-18 3.2E-23 164.0 15.9 197 235-491 151-369 (440)
110 KOG1273 WD40 repeat protein [G 99.8 9.9E-18 2.2E-22 155.1 20.3 239 239-490 27-313 (405)
111 KOG1036 Mitotic spindle checkp 99.8 1.2E-17 2.7E-22 154.3 20.2 190 280-491 90-295 (323)
112 KOG0294 WD40 repeat-containing 99.8 6.7E-18 1.5E-22 156.3 18.1 221 227-478 75-305 (362)
113 KOG1007 WD repeat protein TSSC 99.8 5.5E-18 1.2E-22 155.1 16.8 265 142-485 38-345 (370)
114 KOG0772 Uncharacterized conser 99.8 1.2E-17 2.6E-22 163.4 20.2 280 180-492 179-479 (641)
115 KOG0301 Phospholipase A2-activ 99.8 6.9E-18 1.5E-22 170.3 18.6 229 231-492 10-241 (745)
116 KOG1332 Vesicle coat complex C 99.8 3.7E-18 8E-23 152.9 14.6 252 180-464 23-292 (299)
117 KOG4328 WD40 protein [Function 99.8 6E-18 1.3E-22 163.5 17.2 236 231-489 182-439 (498)
118 KOG1274 WD40 repeat protein [G 99.8 3.8E-17 8.2E-22 169.8 23.7 231 233-492 11-254 (933)
119 KOG1407 WD40 repeat protein [F 99.8 1E-17 2.2E-22 151.4 16.0 215 166-450 17-293 (313)
120 KOG0640 mRNA cleavage stimulat 99.8 7.2E-18 1.6E-22 155.6 15.1 196 278-492 106-327 (430)
121 KOG2106 Uncharacterized conser 99.8 1.9E-16 4.2E-21 154.6 25.7 256 228-493 193-470 (626)
122 KOG0642 Cell-cycle nuclear pro 99.8 1.2E-17 2.6E-22 165.3 16.1 226 213-492 273-553 (577)
123 KOG0303 Actin-binding protein 99.8 1.8E-17 4E-22 157.4 16.4 183 247-488 44-234 (472)
124 KOG1539 WD repeat protein [Gen 99.8 1.6E-17 3.4E-22 170.8 17.2 187 237-491 450-638 (910)
125 KOG0278 Serine/threonine kinas 99.8 2.8E-18 6.1E-23 154.0 10.0 232 232-492 11-246 (334)
126 KOG1274 WD40 repeat protein [G 99.8 4.9E-17 1.1E-21 168.9 19.6 189 232-486 93-286 (933)
127 KOG0300 WD40 repeat-containing 99.7 1.4E-17 3.1E-22 154.0 13.3 232 229-491 142-377 (481)
128 KOG2055 WD40 repeat protein [G 99.7 7.7E-17 1.7E-21 156.0 18.8 231 235-490 213-455 (514)
129 KOG0269 WD40 repeat-containing 99.7 1.1E-17 2.4E-22 170.7 13.6 232 237-489 41-282 (839)
130 KOG2048 WD40 repeat protein [G 99.7 3.9E-16 8.4E-21 157.6 23.8 231 235-492 25-267 (691)
131 KOG0639 Transducin-like enhanc 99.7 3.2E-17 6.9E-22 159.8 15.5 230 236-492 466-696 (705)
132 KOG0270 WD40 repeat-containing 99.7 6.9E-17 1.5E-21 155.8 17.5 225 246-489 191-438 (463)
133 KOG4378 Nuclear protein COP1 [ 99.7 7E-17 1.5E-21 157.3 16.9 219 238-482 82-305 (673)
134 KOG0307 Vesicle coat complex C 99.7 1.5E-17 3.3E-22 176.6 13.3 229 239-485 68-311 (1049)
135 KOG1009 Chromatin assembly com 99.7 2.1E-17 4.5E-22 157.7 12.2 208 236-490 14-250 (434)
136 KOG2445 Nuclear pore complex c 99.7 2E-16 4.3E-21 146.2 18.0 248 180-459 25-318 (361)
137 KOG0646 WD40 repeat protein [G 99.7 6.5E-17 1.4E-21 156.8 15.4 224 231-459 119-350 (476)
138 KOG2096 WD40 repeat protein [G 99.7 1.7E-16 3.6E-21 147.2 17.1 203 277-492 79-300 (420)
139 KOG1063 RNA polymerase II elon 99.7 3.3E-16 7.2E-21 158.3 17.3 264 222-493 301-641 (764)
140 KOG0268 Sof1-like rRNA process 99.7 1.1E-16 2.3E-21 150.8 12.6 229 230-492 104-337 (433)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.7E-14 3.6E-19 141.1 27.6 223 238-490 33-268 (300)
142 KOG1063 RNA polymerase II elon 99.7 3.3E-16 7.1E-21 158.3 14.6 203 225-492 515-755 (764)
143 KOG0647 mRNA export protein (c 99.7 2.8E-15 6.2E-20 138.3 18.9 234 180-447 40-311 (347)
144 KOG2106 Uncharacterized conser 99.7 1.9E-14 4.2E-19 140.8 25.5 238 237-492 248-513 (626)
145 KOG0267 Microtubule severing p 99.7 5E-17 1.1E-21 164.8 7.8 214 245-492 2-218 (825)
146 KOG4283 Transcription-coupled 99.7 1.2E-15 2.7E-20 140.1 14.8 205 281-491 40-267 (397)
147 KOG1587 Cytoplasmic dynein int 99.7 3.8E-15 8.2E-20 154.3 19.7 241 235-492 242-508 (555)
148 KOG0303 Actin-binding protein 99.7 6.2E-15 1.3E-19 140.4 18.7 199 228-490 74-283 (472)
149 KOG1538 Uncharacterized conser 99.7 5.9E-15 1.3E-19 148.4 19.4 223 237-493 14-286 (1081)
150 KOG1273 WD40 repeat protein [G 99.7 2.4E-15 5.1E-20 139.5 15.0 144 287-492 26-218 (405)
151 KOG2919 Guanine nucleotide-bin 99.7 4.7E-15 1E-19 137.9 17.0 223 243-491 119-361 (406)
152 KOG1445 Tumor-specific antigen 99.7 1.5E-15 3.2E-20 151.9 14.4 192 242-492 586-786 (1012)
153 KOG1408 WD40 repeat protein [F 99.7 6.4E-15 1.4E-19 149.2 19.1 228 249-493 394-664 (1080)
154 KOG0650 WD40 repeat nucleolar 99.7 5.1E-15 1.1E-19 147.5 18.0 212 278-492 394-629 (733)
155 KOG4378 Nuclear protein COP1 [ 99.6 1.3E-15 2.9E-20 148.4 13.5 230 238-492 37-272 (673)
156 KOG0771 Prolactin regulatory e 99.6 3.3E-15 7.2E-20 143.7 15.7 202 239-460 148-355 (398)
157 KOG1034 Transcriptional repres 99.6 3.9E-15 8.4E-20 138.8 15.3 179 247-492 105-375 (385)
158 KOG0649 WD40 repeat protein [G 99.6 3.3E-14 7.1E-19 127.6 20.6 216 239-481 14-257 (325)
159 KOG1524 WD40 repeat-containing 99.6 2.8E-15 6.1E-20 147.5 15.0 201 248-491 76-277 (737)
160 KOG1539 WD repeat protein [Gen 99.6 1.8E-14 4E-19 148.5 20.4 251 235-492 244-598 (910)
161 KOG2048 WD40 repeat protein [G 99.6 1.2E-14 2.7E-19 146.8 18.5 200 230-492 105-311 (691)
162 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.5E-13 3.2E-18 134.3 25.5 212 240-480 77-300 (300)
163 KOG0642 Cell-cycle nuclear pro 99.6 4.6E-15 1E-19 147.1 14.5 221 225-464 334-566 (577)
164 KOG0307 Vesicle coat complex C 99.6 1.8E-15 3.9E-20 161.0 10.5 215 228-462 109-330 (1049)
165 KOG0321 WD40 repeat-containing 99.6 3.2E-14 6.9E-19 142.9 17.2 229 246-491 63-338 (720)
166 KOG0644 Uncharacterized conser 99.6 1.5E-15 3.2E-20 156.1 7.8 234 228-488 183-456 (1113)
167 KOG1007 WD repeat protein TSSC 99.6 2.8E-14 6.1E-19 131.0 15.2 199 235-491 63-280 (370)
168 KOG1188 WD40 repeat protein [G 99.6 6.8E-14 1.5E-18 131.3 17.6 197 248-464 41-247 (376)
169 KOG1036 Mitotic spindle checkp 99.6 2E-13 4.4E-18 126.6 18.1 183 283-491 12-198 (323)
170 KOG1523 Actin-related protein 99.6 1.1E-13 2.3E-18 129.0 15.4 194 235-492 10-228 (361)
171 KOG0321 WD40 repeat-containing 99.6 6.9E-14 1.5E-18 140.5 15.2 256 228-492 93-383 (720)
172 KOG1445 Tumor-specific antigen 99.6 5.3E-14 1.1E-18 140.9 14.3 160 238-460 630-799 (1012)
173 KOG0322 G-protein beta subunit 99.6 1.9E-13 4.1E-18 124.2 16.5 241 231-492 10-315 (323)
174 KOG1009 Chromatin assembly com 99.5 5.7E-13 1.2E-17 127.6 19.9 235 226-462 56-375 (434)
175 KOG1034 Transcriptional repres 99.5 7.8E-14 1.7E-18 130.2 13.3 221 228-459 128-383 (385)
176 KOG0290 Conserved WD40 repeat- 99.5 1.7E-13 3.7E-18 126.0 14.7 193 239-492 100-309 (364)
177 KOG4328 WD40 protein [Function 99.5 1.6E-13 3.4E-18 133.2 15.2 199 276-491 178-390 (498)
178 KOG0290 Conserved WD40 repeat- 99.5 2.4E-13 5.2E-18 125.1 14.8 191 246-455 162-361 (364)
179 KOG1310 WD40 repeat protein [G 99.5 6.8E-14 1.5E-18 138.2 11.6 181 221-459 33-231 (758)
180 KOG4227 WD40 repeat protein [G 99.5 2.3E-13 5E-18 129.5 14.3 202 230-492 51-266 (609)
181 PF08662 eIF2A: Eukaryotic tra 99.5 1.8E-12 3.9E-17 118.8 19.8 152 241-464 11-184 (194)
182 KOG2055 WD40 repeat protein [G 99.5 1.4E-12 3.1E-17 126.7 19.5 190 284-491 213-408 (514)
183 COG2319 FOG: WD40 repeat [Gene 99.5 1.7E-11 3.7E-16 123.5 28.1 234 230-491 60-305 (466)
184 KOG2394 WD40 protein DMR-N9 [G 99.5 5.5E-13 1.2E-17 131.8 15.9 199 244-480 182-384 (636)
185 KOG0650 WD40 repeat nucleolar 99.5 7.2E-13 1.6E-17 132.3 16.1 247 231-492 396-672 (733)
186 KOG2139 WD40 repeat protein [G 99.5 2.2E-12 4.8E-17 122.0 17.0 191 241-490 104-300 (445)
187 COG2319 FOG: WD40 repeat [Gene 99.5 5.9E-11 1.3E-15 119.5 27.8 218 244-488 119-346 (466)
188 PF08662 eIF2A: Eukaryotic tra 99.4 6.3E-12 1.4E-16 115.3 18.2 99 388-490 59-163 (194)
189 KOG2110 Uncharacterized conser 99.4 2.1E-11 4.6E-16 115.8 21.8 177 256-460 67-249 (391)
190 PRK01742 tolB translocation pr 99.4 8.4E-12 1.8E-16 129.1 19.8 186 231-492 199-393 (429)
191 KOG1310 WD40 repeat protein [G 99.4 5.6E-13 1.2E-17 131.8 10.3 157 274-491 40-222 (758)
192 KOG1963 WD40 repeat protein [G 99.4 3.8E-11 8.3E-16 125.3 22.7 242 241-491 22-313 (792)
193 KOG2919 Guanine nucleotide-bin 99.4 3.7E-11 8E-16 112.3 20.2 234 241-492 55-319 (406)
194 KOG4227 WD40 repeat protein [G 99.4 3.1E-12 6.7E-17 121.9 13.4 156 276-488 48-212 (609)
195 KOG0771 Prolactin regulatory e 99.4 2.4E-12 5.2E-17 124.2 12.6 140 288-491 148-345 (398)
196 KOG1517 Guanine nucleotide bin 99.4 6.6E-12 1.4E-16 132.7 16.7 230 246-492 1122-1373(1387)
197 KOG1240 Protein kinase contain 99.4 5.4E-11 1.2E-15 127.8 22.7 236 221-463 1031-1277(1431)
198 KOG2110 Uncharacterized conser 99.4 1E-10 2.2E-15 111.2 21.9 221 240-492 10-240 (391)
199 KOG0649 WD40 repeat protein [G 99.4 9E-11 2E-15 105.8 19.6 188 235-487 114-302 (325)
200 KOG2111 Uncharacterized conser 99.4 6.9E-10 1.5E-14 103.8 26.1 177 257-460 75-257 (346)
201 KOG1538 Uncharacterized conser 99.4 3.8E-11 8.3E-16 121.3 18.5 210 230-460 48-294 (1081)
202 PRK11028 6-phosphogluconolacto 99.4 3.7E-10 8E-15 112.8 25.8 231 238-490 37-293 (330)
203 PRK05137 tolB translocation pr 99.4 1.1E-10 2.3E-15 121.2 22.3 187 231-490 197-396 (435)
204 PRK04922 tolB translocation pr 99.4 9.1E-11 2E-15 121.6 21.7 187 231-490 199-398 (433)
205 KOG1188 WD40 repeat protein [G 99.3 2.2E-11 4.8E-16 114.6 15.1 170 297-482 41-223 (376)
206 PRK03629 tolB translocation pr 99.3 1.4E-10 3E-15 120.0 22.6 186 234-492 197-395 (429)
207 KOG0322 G-protein beta subunit 99.3 6.8E-12 1.5E-16 114.2 10.4 151 249-458 167-322 (323)
208 KOG1963 WD40 repeat protein [G 99.3 2.3E-10 5E-15 119.6 22.7 249 236-491 206-530 (792)
209 KOG1523 Actin-related protein 99.3 2.9E-11 6.2E-16 113.0 14.0 150 283-492 9-168 (361)
210 PRK02889 tolB translocation pr 99.3 2.1E-10 4.6E-15 118.6 22.0 188 233-491 193-391 (427)
211 PRK11028 6-phosphogluconolacto 99.3 1.1E-09 2.3E-14 109.5 24.1 217 250-489 5-246 (330)
212 KOG0644 Uncharacterized conser 99.3 2.1E-12 4.6E-17 133.3 4.6 150 274-491 180-337 (1113)
213 KOG1517 Guanine nucleotide bin 99.3 2.2E-10 4.7E-15 121.5 19.0 239 239-490 1068-1324(1387)
214 KOG2394 WD40 protein DMR-N9 [G 99.3 4.6E-11 9.9E-16 118.4 13.0 167 236-464 220-457 (636)
215 PRK05137 tolB translocation pr 99.3 8E-10 1.7E-14 114.7 22.4 162 256-489 181-352 (435)
216 KOG3881 Uncharacterized conser 99.3 6.5E-10 1.4E-14 106.6 19.3 224 247-483 115-344 (412)
217 KOG2321 WD40 repeat protein [G 99.2 1.7E-10 3.7E-15 115.2 16.0 102 388-489 228-332 (703)
218 TIGR02800 propeller_TolB tol-p 99.2 8.9E-10 1.9E-14 113.7 22.2 182 237-491 191-385 (417)
219 KOG1524 WD40 repeat-containing 99.2 1.2E-10 2.6E-15 115.4 12.9 193 282-490 12-246 (737)
220 PRK01742 tolB translocation pr 99.2 5E-10 1.1E-14 116.0 17.7 160 256-490 183-352 (429)
221 KOG1272 WD40-repeat-containing 99.2 4.7E-11 1E-15 116.4 8.4 215 240-488 134-352 (545)
222 PRK03629 tolB translocation pr 99.2 3.1E-09 6.7E-14 109.9 22.6 162 257-490 179-350 (429)
223 KOG1587 Cytoplasmic dynein int 99.2 1.8E-09 3.9E-14 112.4 19.8 214 257-488 222-459 (555)
224 KOG1354 Serine/threonine prote 99.2 4.8E-10 1E-14 105.7 14.0 224 234-488 24-290 (433)
225 KOG0974 WD-repeat protein WDR6 99.1 4.5E-10 9.8E-15 119.3 13.8 150 241-461 139-290 (967)
226 KOG2111 Uncharacterized conser 99.1 1.1E-08 2.4E-13 95.9 21.1 213 241-491 11-247 (346)
227 PRK04922 tolB translocation pr 99.1 3.1E-09 6.8E-14 110.2 19.5 161 257-489 184-354 (433)
228 KOG4497 Uncharacterized conser 99.1 1.9E-09 4.1E-14 101.2 15.8 180 241-492 14-232 (447)
229 KOG2321 WD40 repeat protein [G 99.1 2.3E-09 5E-14 107.3 17.3 200 282-483 49-284 (703)
230 KOG2139 WD40 repeat protein [G 99.1 3.9E-09 8.5E-14 100.3 17.9 188 236-489 141-364 (445)
231 KOG1334 WD40 repeat protein [G 99.1 4.8E-10 1E-14 110.1 12.1 257 228-491 135-457 (559)
232 PRK00178 tolB translocation pr 99.1 9.7E-09 2.1E-13 106.5 22.7 184 234-490 197-393 (430)
233 TIGR02800 propeller_TolB tol-p 99.1 9.4E-09 2E-13 106.1 21.6 164 256-491 169-342 (417)
234 KOG0974 WD-repeat protein WDR6 99.1 5.1E-09 1.1E-13 111.5 19.2 188 286-492 89-280 (967)
235 KOG4547 WD40 repeat-containing 99.1 1.3E-08 2.8E-13 102.6 19.7 102 385-489 99-208 (541)
236 KOG4497 Uncharacterized conser 99.1 1.8E-08 3.8E-13 94.8 19.2 103 388-491 318-423 (447)
237 PRK04792 tolB translocation pr 99.1 2.1E-08 4.5E-13 104.3 21.9 184 234-490 216-412 (448)
238 PRK02889 tolB translocation pr 99.1 1.5E-08 3.3E-13 104.8 20.8 162 257-490 176-347 (427)
239 PF02239 Cytochrom_D1: Cytochr 99.1 4E-08 8.6E-13 99.1 23.2 228 238-490 39-335 (369)
240 KOG4190 Uncharacterized conser 99.1 2.9E-10 6.3E-15 112.9 7.5 180 228-467 728-915 (1034)
241 KOG0280 Uncharacterized conser 99.0 1.4E-08 3.1E-13 94.1 16.6 213 255-483 44-266 (339)
242 KOG1064 RAVE (regulator of V-A 99.0 1.1E-09 2.5E-14 121.5 10.5 199 232-465 2205-2404(2439)
243 PRK01029 tolB translocation pr 98.9 2.1E-07 4.5E-12 96.1 23.7 221 237-482 186-426 (428)
244 KOG1334 WD40 repeat protein [G 98.9 5.1E-09 1.1E-13 103.0 10.3 198 278-490 136-356 (559)
245 KOG3914 WD repeat protein WDR4 98.9 9.6E-09 2.1E-13 99.1 11.9 79 384-464 147-228 (390)
246 PRK04792 tolB translocation pr 98.9 1.1E-07 2.5E-12 98.8 20.9 161 258-490 199-369 (448)
247 PRK00178 tolB translocation pr 98.9 1.4E-07 3.1E-12 97.8 20.9 161 258-490 180-350 (430)
248 KOG2315 Predicted translation 98.9 2.3E-07 5E-12 93.1 20.8 229 240-490 130-374 (566)
249 KOG2041 WD40 repeat protein [G 98.9 1.6E-07 3.4E-12 96.4 19.4 251 239-490 18-328 (1189)
250 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.4E-06 2.9E-11 86.5 25.6 227 243-489 53-318 (352)
251 PF02239 Cytochrom_D1: Cytochr 98.9 5.5E-07 1.2E-11 90.9 22.8 169 250-489 9-190 (369)
252 KOG2314 Translation initiation 98.9 1.9E-07 4.1E-12 93.5 18.8 100 388-490 445-557 (698)
253 PF10282 Lactonase: Lactonase, 98.8 1.7E-06 3.6E-11 87.0 25.7 237 236-491 37-312 (345)
254 KOG1409 Uncharacterized conser 98.8 1.2E-07 2.7E-12 89.8 15.5 229 229-463 18-274 (404)
255 KOG1240 Protein kinase contain 98.8 1.2E-07 2.6E-12 102.7 17.3 195 279-490 1043-1261(1431)
256 KOG0280 Uncharacterized conser 98.8 5.3E-08 1.1E-12 90.5 12.5 155 241-461 127-286 (339)
257 KOG1272 WD40-repeat-containing 98.8 8.8E-09 1.9E-13 100.8 7.7 181 286-491 131-314 (545)
258 KOG3881 Uncharacterized conser 98.8 8.4E-07 1.8E-11 85.5 19.7 236 236-491 56-311 (412)
259 PRK01029 tolB translocation pr 98.7 2.5E-06 5.4E-11 88.2 23.5 212 257-490 165-390 (428)
260 PF15492 Nbas_N: Neuroblastoma 98.7 2.7E-06 5.9E-11 79.4 20.7 211 241-464 3-264 (282)
261 KOG2315 Predicted translation 98.7 1.6E-06 3.5E-11 87.2 19.9 218 235-481 165-411 (566)
262 PF07433 DUF1513: Protein of u 98.7 1.1E-05 2.5E-10 77.4 23.9 241 237-490 6-276 (305)
263 COG5170 CDC55 Serine/threonine 98.7 2E-07 4.4E-12 87.1 11.4 231 235-488 26-298 (460)
264 PRK04043 tolB translocation pr 98.7 4.9E-06 1.1E-10 85.6 22.6 177 239-490 191-387 (419)
265 COG4946 Uncharacterized protei 98.6 9.2E-06 2E-10 80.3 21.0 170 246-489 331-507 (668)
266 COG5354 Uncharacterized protei 98.6 1.2E-05 2.7E-10 80.1 21.5 227 241-489 137-378 (561)
267 PF00400 WD40: WD domain, G-be 98.6 1.6E-07 3.4E-12 61.9 5.8 36 277-312 4-39 (39)
268 COG2706 3-carboxymuconate cycl 98.6 5.6E-05 1.2E-09 72.8 25.0 214 256-490 15-263 (346)
269 KOG1354 Serine/threonine prote 98.5 4.3E-06 9.3E-11 79.5 16.2 226 248-491 99-426 (433)
270 KOG3914 WD repeat protein WDR4 98.5 3.9E-07 8.4E-12 88.2 9.4 126 232-426 104-232 (390)
271 COG5354 Uncharacterized protei 98.5 1.5E-05 3.2E-10 79.6 19.7 240 240-492 37-337 (561)
272 PF10282 Lactonase: Lactonase, 98.5 5.2E-05 1.1E-09 76.2 24.3 221 250-490 2-264 (345)
273 PF08450 SGL: SMP-30/Gluconola 98.5 0.0004 8.7E-09 66.2 28.9 224 241-490 5-245 (246)
274 PLN02919 haloacid dehalogenase 98.5 3E-05 6.5E-10 88.4 24.0 205 238-491 626-879 (1057)
275 KOG4547 WD40 repeat-containing 98.5 3.2E-06 7E-11 85.6 14.1 145 246-460 69-221 (541)
276 KOG0882 Cyclophilin-related pe 98.5 1.6E-06 3.5E-11 85.0 11.6 203 243-464 16-236 (558)
277 PF00400 WD40: WD domain, G-be 98.4 8.2E-07 1.8E-11 58.4 6.4 37 379-415 2-39 (39)
278 COG2706 3-carboxymuconate cycl 98.4 0.00024 5.1E-09 68.6 25.4 236 236-491 40-311 (346)
279 KOG1064 RAVE (regulator of V-A 98.4 1.2E-06 2.6E-11 98.3 9.6 161 280-464 2204-2371(2439)
280 KOG2695 WD40 repeat protein [G 98.4 1.8E-06 4E-11 82.0 9.4 161 252-480 229-402 (425)
281 KOG0309 Conserved WD40 repeat- 98.4 1.6E-06 3.4E-11 89.6 9.2 178 244-486 78-261 (1081)
282 PF04762 IKI3: IKI3 family; I 98.3 0.00017 3.6E-09 81.1 25.2 243 233-492 118-448 (928)
283 PLN02919 haloacid dehalogenase 98.3 4.9E-05 1.1E-09 86.7 20.9 183 239-463 686-892 (1057)
284 KOG4190 Uncharacterized conser 98.3 7.6E-07 1.6E-11 89.0 5.5 158 278-493 729-899 (1034)
285 KOG4714 Nucleoporin [Nuclear s 98.2 5.6E-06 1.2E-10 76.0 8.9 71 390-460 181-255 (319)
286 KOG2695 WD40 repeat protein [G 98.2 4.9E-06 1.1E-10 79.2 8.7 139 238-438 255-402 (425)
287 PF04762 IKI3: IKI3 family; I 98.2 0.00015 3.2E-09 81.4 22.0 229 236-491 76-325 (928)
288 KOG4532 WD40-like repeat conta 98.2 0.00019 4.1E-09 66.5 18.4 219 246-489 83-321 (344)
289 KOG2041 WD40 repeat protein [G 98.2 4.6E-06 1E-10 86.0 8.8 157 283-487 13-173 (1189)
290 PRK04043 tolB translocation pr 98.2 0.00019 4.1E-09 73.9 20.3 99 389-490 233-338 (419)
291 KOG1409 Uncharacterized conser 98.2 2.5E-05 5.4E-10 74.5 12.3 199 278-492 18-262 (404)
292 KOG1832 HIV-1 Vpr-binding prot 98.1 2.6E-06 5.6E-11 89.7 4.9 205 271-487 1088-1318(1516)
293 KOG4532 WD40-like repeat conta 98.1 0.00022 4.7E-09 66.0 16.5 92 391-483 161-263 (344)
294 KOG2114 Vacuolar assembly/sort 98.0 0.00095 2.1E-08 71.0 21.6 204 241-464 29-248 (933)
295 PF11768 DUF3312: Protein of u 98.0 0.00031 6.8E-09 72.0 17.4 95 386-482 257-369 (545)
296 KOG2066 Vacuolar assembly/sort 98.0 0.00059 1.3E-08 72.0 19.4 181 246-461 48-235 (846)
297 COG4946 Uncharacterized protei 98.0 0.00096 2.1E-08 66.4 19.5 102 386-488 357-461 (668)
298 KOG1275 PAB-dependent poly(A) 98.0 0.00015 3.4E-09 77.1 14.9 177 245-493 145-335 (1118)
299 KOG1912 WD40 repeat protein [G 97.9 0.00017 3.8E-09 75.4 14.3 151 238-459 18-186 (1062)
300 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.0074 1.6E-07 60.1 25.0 79 388-467 247-338 (352)
301 KOG0309 Conserved WD40 repeat- 97.9 6.2E-05 1.3E-09 78.2 9.1 179 284-479 24-210 (1081)
302 KOG4714 Nucleoporin [Nuclear s 97.8 6.4E-05 1.4E-09 69.2 8.0 72 286-418 181-255 (319)
303 PF15492 Nbas_N: Neuroblastoma 97.8 0.0016 3.4E-08 61.2 17.1 182 241-426 49-268 (282)
304 COG5170 CDC55 Serine/threonine 97.8 0.00014 3E-09 68.6 10.1 152 281-489 169-356 (460)
305 PF06977 SdiA-regulated: SdiA- 97.8 0.0037 8E-08 59.2 20.0 191 280-488 17-239 (248)
306 KOG1645 RING-finger-containing 97.8 0.0009 1.9E-08 65.4 15.8 76 234-317 192-269 (463)
307 PF08596 Lgl_C: Lethal giant l 97.8 0.0021 4.6E-08 65.3 19.4 243 238-489 4-325 (395)
308 PF11768 DUF3312: Protein of u 97.8 0.0038 8.2E-08 64.3 20.7 101 389-491 206-320 (545)
309 KOG1912 WD40 repeat protein [G 97.7 0.0011 2.3E-08 69.8 16.0 206 247-460 79-305 (1062)
310 PF07433 DUF1513: Protein of u 97.7 0.0079 1.7E-07 58.1 20.1 196 241-454 56-280 (305)
311 KOG2314 Translation initiation 97.7 0.00045 9.8E-09 69.9 11.7 133 287-486 213-362 (698)
312 KOG1275 PAB-dependent poly(A) 97.6 0.00036 7.8E-09 74.5 10.9 150 241-415 181-340 (1118)
313 TIGR03300 assembly_YfgL outer 97.6 0.019 4E-07 58.4 22.9 88 400-491 280-370 (377)
314 KOG1832 HIV-1 Vpr-binding prot 97.6 7E-05 1.5E-09 79.3 5.0 236 233-487 1099-1376(1516)
315 PF08450 SGL: SMP-30/Gluconola 97.6 0.012 2.5E-07 56.0 20.0 97 391-490 42-153 (246)
316 KOG1645 RING-finger-containing 97.4 0.00031 6.7E-09 68.5 6.8 82 381-462 186-269 (463)
317 KOG1920 IkappaB kinase complex 97.4 0.0067 1.5E-07 67.1 17.4 228 236-491 69-310 (1265)
318 KOG1008 Uncharacterized conser 97.4 4.2E-05 9E-10 78.5 0.4 178 246-486 69-259 (783)
319 KOG3617 WD40 and TPR repeat-co 97.4 0.002 4.4E-08 68.4 12.4 70 239-315 63-132 (1416)
320 smart00320 WD40 WD40 repeats. 97.4 0.0004 8.8E-09 43.6 4.9 35 278-312 6-40 (40)
321 PF04053 Coatomer_WDAD: Coatom 97.3 0.0078 1.7E-07 62.1 15.7 34 279-313 27-60 (443)
322 KOG4640 Anaphase-promoting com 97.3 0.0014 3E-08 67.6 9.5 91 388-480 20-115 (665)
323 KOG3621 WD40 repeat-containing 97.2 0.003 6.5E-08 66.0 11.1 116 241-418 39-155 (726)
324 smart00320 WD40 WD40 repeats. 97.2 0.0012 2.7E-08 41.3 5.6 36 421-457 4-40 (40)
325 PRK02888 nitrous-oxide reducta 97.1 0.038 8.3E-07 58.4 18.6 102 387-489 319-450 (635)
326 KOG0882 Cyclophilin-related pe 97.1 0.0051 1.1E-07 61.0 11.3 164 253-470 118-316 (558)
327 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.053 1.1E-06 44.1 15.2 66 388-455 42-110 (111)
328 TIGR03300 assembly_YfgL outer 97.1 0.36 7.8E-06 49.0 25.2 62 400-465 242-303 (377)
329 PF04053 Coatomer_WDAD: Coatom 97.0 0.011 2.3E-07 61.1 13.5 160 238-481 35-207 (443)
330 KOG1920 IkappaB kinase complex 97.0 0.03 6.6E-07 62.2 17.4 209 234-458 108-364 (1265)
331 KOG4640 Anaphase-promoting com 97.0 0.0032 6.9E-08 65.1 9.4 91 285-438 21-115 (665)
332 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.17 3.7E-06 51.0 22.1 97 393-490 239-347 (353)
333 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.058 1.3E-06 43.9 14.7 94 391-490 2-104 (111)
334 KOG3621 WD40 repeat-containing 97.0 0.0058 1.3E-07 64.0 11.1 135 283-479 32-179 (726)
335 PF13360 PQQ_2: PQQ-like domai 96.9 0.13 2.9E-06 48.1 19.5 166 295-489 35-219 (238)
336 PF13360 PQQ_2: PQQ-like domai 96.9 0.23 5E-06 46.4 21.1 161 246-465 75-236 (238)
337 PRK02888 nitrous-oxide reducta 96.9 0.052 1.1E-06 57.5 17.5 94 396-490 200-340 (635)
338 PF04841 Vps16_N: Vps16, N-ter 96.9 0.44 9.5E-06 49.0 23.8 81 401-485 192-274 (410)
339 COG3490 Uncharacterized protei 96.8 0.13 2.7E-06 48.8 17.4 220 240-466 72-317 (366)
340 PF08553 VID27: VID27 cytoplas 96.8 0.028 6.1E-07 61.4 15.0 150 296-458 493-646 (794)
341 KOG3617 WD40 and TPR repeat-co 96.8 0.014 2.9E-07 62.4 12.0 106 241-417 21-131 (1416)
342 PF08596 Lgl_C: Lethal giant l 96.8 0.051 1.1E-06 55.3 16.0 169 286-477 3-199 (395)
343 KOG2114 Vacuolar assembly/sort 96.7 0.15 3.2E-06 55.0 19.0 188 291-490 30-234 (933)
344 COG0823 TolB Periplasmic compo 96.7 0.026 5.5E-07 58.1 13.2 95 393-489 242-344 (425)
345 PF06433 Me-amine-dh_H: Methyl 96.7 0.38 8.2E-06 47.3 20.4 58 410-467 270-328 (342)
346 PF03178 CPSF_A: CPSF A subuni 96.6 0.51 1.1E-05 46.8 21.5 167 247-480 42-237 (321)
347 COG3386 Gluconolactonase [Carb 96.6 0.73 1.6E-05 45.3 21.8 105 384-490 158-275 (307)
348 PF08553 VID27: VID27 cytoplas 96.6 0.05 1.1E-06 59.6 14.7 110 379-490 515-638 (794)
349 KOG2066 Vacuolar assembly/sort 96.6 0.022 4.7E-07 60.6 11.4 89 399-490 82-178 (846)
350 PF00930 DPPIV_N: Dipeptidyl p 96.5 1.1 2.4E-05 45.1 25.4 234 244-489 1-299 (353)
351 COG3391 Uncharacterized conser 96.3 0.96 2.1E-05 46.1 21.9 178 240-489 78-271 (381)
352 PF06977 SdiA-regulated: SdiA- 96.0 0.49 1.1E-05 44.9 16.3 207 231-456 17-247 (248)
353 KOG2079 Vacuolar assembly/sort 95.9 0.22 4.8E-06 55.0 15.2 85 246-336 98-182 (1206)
354 COG0823 TolB Periplasmic compo 95.9 0.12 2.6E-06 53.2 12.8 106 385-491 189-302 (425)
355 KOG2395 Protein involved in va 95.9 0.25 5.4E-06 50.6 14.4 151 295-459 344-500 (644)
356 PF00780 CNH: CNH domain; Int 95.9 1.4 3E-05 42.4 19.8 161 244-466 4-172 (275)
357 PF04841 Vps16_N: Vps16, N-ter 95.9 1.5 3.2E-05 45.2 20.7 71 388-461 216-289 (410)
358 PF12894 Apc4_WD40: Anaphase-p 95.9 0.034 7.4E-07 37.9 5.8 32 427-459 10-41 (47)
359 PRK11138 outer membrane biogen 95.8 2.7 5.8E-05 42.9 25.0 63 400-465 295-359 (394)
360 PF12894 Apc4_WD40: Anaphase-p 95.8 0.033 7.1E-07 38.0 5.4 34 284-318 11-44 (47)
361 PRK11138 outer membrane biogen 95.7 1.1 2.3E-05 45.9 18.9 57 399-458 335-393 (394)
362 KOG1008 Uncharacterized conser 95.5 0.0043 9.4E-08 64.2 0.6 154 238-459 105-275 (783)
363 COG3490 Uncharacterized protei 95.1 0.68 1.5E-05 44.0 13.5 63 241-311 119-186 (366)
364 TIGR02604 Piru_Ver_Nterm putat 95.0 0.97 2.1E-05 45.8 15.8 99 389-489 72-202 (367)
365 KOG2395 Protein involved in va 94.9 0.36 7.8E-06 49.5 11.9 106 381-489 369-490 (644)
366 KOG2079 Vacuolar assembly/sort 94.6 0.1 2.2E-06 57.5 7.6 88 401-489 101-194 (1206)
367 COG3204 Uncharacterized protei 94.5 4.9 0.00011 38.6 18.7 200 280-489 81-302 (316)
368 KOG3630 Nuclear pore complex, 94.3 0.67 1.4E-05 51.7 13.1 99 389-488 156-261 (1405)
369 KOG4649 PQQ (pyrrolo-quinoline 94.3 4.8 0.0001 38.0 19.2 74 246-326 62-135 (354)
370 PF15390 DUF4613: Domain of un 94.3 0.57 1.2E-05 48.9 11.8 103 386-489 54-174 (671)
371 KOG4499 Ca2+-binding protein R 94.3 2.1 4.7E-05 39.6 14.3 96 392-488 161-272 (310)
372 PF10168 Nup88: Nuclear pore c 94.2 2.6 5.6E-05 46.4 17.5 80 237-317 86-182 (717)
373 KOG4649 PQQ (pyrrolo-quinoline 94.0 2.7 5.8E-05 39.6 14.5 84 401-485 65-151 (354)
374 PRK13616 lipoprotein LpqB; Pro 94.0 0.26 5.6E-06 53.0 9.3 96 388-488 349-465 (591)
375 cd00216 PQQ_DH Dehydrogenases 93.8 5 0.00011 42.3 18.6 47 440-486 405-453 (488)
376 COG3391 Uncharacterized conser 93.8 4 8.6E-05 41.6 17.2 99 390-489 117-225 (381)
377 PF12234 Rav1p_C: RAVE protein 93.7 1.9 4.1E-05 46.3 15.0 103 388-490 29-148 (631)
378 PF10168 Nup88: Nuclear pore c 93.7 1.9 4.1E-05 47.4 15.4 33 386-418 144-180 (717)
379 PRK13616 lipoprotein LpqB; Pro 93.7 1.9 4.1E-05 46.5 15.1 93 391-487 399-513 (591)
380 KOG2444 WD40 repeat protein [G 93.6 0.089 1.9E-06 48.2 4.2 58 401-459 116-177 (238)
381 PF02897 Peptidase_S9_N: Proly 93.6 9.7 0.00021 39.1 25.2 227 240-488 128-388 (414)
382 PF02897 Peptidase_S9_N: Proly 93.6 9.8 0.00021 39.0 22.8 193 286-488 125-342 (414)
383 PF00780 CNH: CNH domain; Int 93.4 3 6.6E-05 40.0 15.1 96 391-489 38-155 (275)
384 PF05096 Glu_cyclase_2: Glutam 93.3 7.8 0.00017 37.0 21.8 179 286-490 46-250 (264)
385 KOG2444 WD40 repeat protein [G 92.9 0.5 1.1E-05 43.5 7.8 65 247-317 70-135 (238)
386 PF03178 CPSF_A: CPSF A subuni 92.8 6.6 0.00014 38.8 16.7 99 387-490 87-192 (321)
387 KOG1916 Nuclear protein, conta 92.8 0.032 7E-07 60.1 0.1 170 236-418 184-375 (1283)
388 KOG1916 Nuclear protein, conta 92.8 0.14 3E-06 55.5 4.7 86 396-483 243-345 (1283)
389 KOG1983 Tomosyn and related SN 92.6 1.7 3.6E-05 49.8 13.3 76 384-464 194-269 (993)
390 PF14583 Pectate_lyase22: Olig 91.6 17 0.00036 36.8 21.4 246 233-491 33-303 (386)
391 PF10313 DUF2415: Uncharacteri 91.5 0.76 1.6E-05 30.5 5.3 31 285-315 1-34 (43)
392 PF14781 BBS2_N: Ciliary BBSom 91.1 5.9 0.00013 33.5 11.6 88 401-489 12-115 (136)
393 COG3386 Gluconolactonase [Carb 91.0 5.5 0.00012 39.2 13.4 109 236-345 163-273 (307)
394 PF12234 Rav1p_C: RAVE protein 90.9 6.7 0.00014 42.3 14.8 70 387-459 71-156 (631)
395 KOG4441 Proteins containing BT 90.6 17 0.00037 39.1 17.8 91 399-492 427-533 (571)
396 PF07569 Hira: TUP1-like enhan 90.3 1.5 3.3E-05 40.8 8.4 73 241-314 16-95 (219)
397 PF10313 DUF2415: Uncharacteri 90.3 1 2.2E-05 29.9 5.1 32 429-460 1-34 (43)
398 PF10647 Gmad1: Lipoprotein Lp 90.3 2.7 5.9E-05 40.1 10.4 99 390-489 25-130 (253)
399 COG3823 Glutamine cyclotransfe 90.2 11 0.00023 34.6 13.1 90 359-448 145-248 (262)
400 PF05694 SBP56: 56kDa selenium 90.0 11 0.00024 38.5 14.5 61 429-490 312-393 (461)
401 TIGR02604 Piru_Ver_Nterm putat 89.8 11 0.00024 38.1 15.0 71 238-313 16-98 (367)
402 PF15390 DUF4613: Domain of un 89.6 16 0.00035 38.5 15.6 93 393-486 117-218 (671)
403 PF05096 Glu_cyclase_2: Glutam 89.3 21 0.00045 34.1 20.2 183 241-450 50-252 (264)
404 PF07569 Hira: TUP1-like enhan 89.2 4 8.6E-05 38.0 10.3 63 401-465 24-101 (219)
405 PF07995 GSDH: Glucose / Sorbo 89.1 26 0.00056 34.9 24.7 69 423-491 247-326 (331)
406 PF08728 CRT10: CRT10; InterP 88.4 12 0.00026 40.8 14.4 70 389-458 164-245 (717)
407 cd00216 PQQ_DH Dehydrogenases 88.4 37 0.00079 35.9 21.0 56 410-465 257-325 (488)
408 PHA02713 hypothetical protein; 88.2 32 0.00069 37.0 17.8 61 401-464 466-538 (557)
409 PF14727 PHTB1_N: PTHB1 N-term 88.0 35 0.00076 35.1 17.2 57 401-458 147-203 (418)
410 PF14583 Pectate_lyase22: Olig 87.9 33 0.00071 34.7 17.9 77 410-486 169-253 (386)
411 KOG2280 Vacuolar assembly/sort 87.7 25 0.00054 38.2 15.8 96 388-489 216-314 (829)
412 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.4 44 0.00095 35.7 23.5 78 409-487 441-520 (527)
413 KOG4460 Nuclear pore complex, 87.0 6.7 0.00015 40.6 10.8 33 390-422 167-203 (741)
414 PF07995 GSDH: Glucose / Sorbo 86.8 13 0.00029 36.9 13.1 100 390-490 3-133 (331)
415 PF05694 SBP56: 56kDa selenium 86.8 41 0.00088 34.6 16.7 83 407-489 220-330 (461)
416 PF11715 Nup160: Nucleoporin N 85.9 3.4 7.3E-05 44.3 8.9 81 245-325 156-259 (547)
417 PHA03098 kelch-like protein; P 85.8 53 0.0011 35.0 18.3 64 410-476 457-528 (534)
418 PF06433 Me-amine-dh_H: Methyl 85.3 30 0.00065 34.3 14.1 184 235-426 134-329 (342)
419 PF12657 TFIIIC_delta: Transcr 85.0 8 0.00017 34.5 9.5 30 389-418 86-122 (173)
420 KOG2247 WD40 repeat-containing 84.3 0.12 2.6E-06 52.4 -2.8 139 241-452 40-181 (615)
421 KOG3630 Nuclear pore complex, 84.3 1.9 4.2E-05 48.3 5.9 103 390-492 102-220 (1405)
422 KOG4441 Proteins containing BT 84.0 52 0.0011 35.5 16.6 65 401-465 478-552 (571)
423 COG5167 VID27 Protein involved 83.7 5.6 0.00012 41.0 8.5 51 440-490 572-623 (776)
424 KOG2377 Uncharacterized conser 83.5 13 0.00028 38.0 10.8 63 250-316 36-98 (657)
425 TIGR03118 PEPCTERM_chp_1 conse 82.5 51 0.0011 32.2 20.4 76 404-480 217-307 (336)
426 PF11635 Med16: Mediator compl 82.5 89 0.0019 35.0 20.3 63 427-490 258-340 (753)
427 KOG1897 Damage-specific DNA bi 82.2 95 0.0021 35.1 20.6 95 391-489 777-887 (1096)
428 PF14655 RAB3GAP2_N: Rab3 GTPa 82.1 13 0.00029 38.1 10.7 83 382-464 301-403 (415)
429 PF14655 RAB3GAP2_N: Rab3 GTPa 81.0 9.3 0.0002 39.2 9.2 88 393-480 6-118 (415)
430 PF14870 PSII_BNR: Photosynthe 80.6 61 0.0013 31.8 18.9 100 387-489 185-294 (302)
431 KOG1900 Nuclear pore complex, 80.2 20 0.00043 41.4 11.9 71 387-460 177-273 (1311)
432 KOG4499 Ca2+-binding protein R 80.2 29 0.00063 32.5 10.9 103 238-340 160-267 (310)
433 KOG2247 WD40 repeat-containing 79.0 0.34 7.4E-06 49.3 -1.8 97 388-487 74-176 (615)
434 PF14761 HPS3_N: Hermansky-Pud 78.3 11 0.00024 34.7 7.8 47 442-488 29-77 (215)
435 COG5167 VID27 Protein involved 77.7 56 0.0012 34.1 13.1 152 294-459 477-632 (776)
436 COG3204 Uncharacterized protei 76.8 34 0.00073 33.1 10.7 103 385-488 82-198 (316)
437 PRK13684 Ycf48-like protein; P 76.7 40 0.00086 33.6 12.1 99 388-489 172-278 (334)
438 KOG1897 Damage-specific DNA bi 75.2 1.5E+02 0.0033 33.5 25.3 104 389-492 488-605 (1096)
439 PF14870 PSII_BNR: Photosynthe 75.1 87 0.0019 30.7 24.9 104 386-491 142-253 (302)
440 PF10647 Gmad1: Lipoprotein Lp 75.0 78 0.0017 30.1 19.7 159 237-413 25-192 (253)
441 TIGR02276 beta_rpt_yvtn 40-res 74.4 13 0.00029 23.8 5.6 39 398-436 1-41 (42)
442 KOG2377 Uncharacterized conser 74.2 67 0.0014 33.1 12.5 101 387-490 65-173 (657)
443 TIGR02276 beta_rpt_yvtn 40-res 73.4 12 0.00027 23.9 5.2 39 440-478 2-41 (42)
444 PF15477 SMAP: Small acidic pr 71.8 2.6 5.6E-05 31.3 1.7 13 61-73 10-22 (69)
445 PRK10115 protease 2; Provision 70.7 85 0.0019 34.7 13.9 99 390-491 128-243 (686)
446 PHA03098 kelch-like protein; P 70.7 1.3E+02 0.0028 32.0 15.2 87 401-491 392-497 (534)
447 PF10214 Rrn6: RNA polymerase 70.5 1.9E+02 0.0041 32.5 20.4 92 388-481 145-257 (765)
448 PLN00033 photosystem II stabil 70.4 64 0.0014 33.0 12.0 97 391-490 241-347 (398)
449 PHA02713 hypothetical protein; 70.3 1.1E+02 0.0024 32.9 14.4 78 410-491 433-522 (557)
450 TIGR03606 non_repeat_PQQ dehyd 70.1 1.4E+02 0.0031 31.1 19.4 34 283-316 28-61 (454)
451 TIGR03606 non_repeat_PQQ dehyd 70.1 1.4E+02 0.0031 31.0 15.7 105 385-490 26-165 (454)
452 PF13449 Phytase-like: Esteras 69.6 1.2E+02 0.0026 30.0 18.0 96 390-487 86-231 (326)
453 PRK10115 protease 2; Provision 68.0 2E+02 0.0043 31.9 26.7 68 240-316 131-209 (686)
454 PF14781 BBS2_N: Ciliary BBSom 67.7 76 0.0017 27.0 13.1 75 388-464 47-130 (136)
455 PF07676 PD40: WD40-like Beta 67.7 15 0.00033 23.3 4.6 25 466-490 4-28 (39)
456 PF12768 Rax2: Cortical protei 67.1 55 0.0012 31.7 10.2 71 408-479 15-97 (281)
457 PF03088 Str_synth: Strictosid 67.1 15 0.00032 28.8 5.1 44 447-490 33-76 (89)
458 PRK13684 Ycf48-like protein; P 66.7 1.4E+02 0.0031 29.7 18.7 100 388-490 214-322 (334)
459 PF10395 Utp8: Utp8 family; I 66.4 2E+02 0.0044 31.4 15.5 31 284-314 129-159 (670)
460 KOG2280 Vacuolar assembly/sort 65.4 2.2E+02 0.0047 31.4 17.4 36 428-464 216-251 (829)
461 TIGR03074 PQQ_membr_DH membran 64.7 1.3E+02 0.0028 33.8 13.7 65 401-465 262-350 (764)
462 PF12657 TFIIIC_delta: Transcr 64.4 45 0.00097 29.6 8.5 29 286-314 87-121 (173)
463 PF08728 CRT10: CRT10; InterP 63.0 44 0.00095 36.7 9.3 68 245-313 112-194 (717)
464 PF11715 Nup160: Nucleoporin N 62.5 16 0.00036 39.0 6.3 36 390-425 216-256 (547)
465 PLN00033 photosystem II stabil 62.4 1.9E+02 0.0041 29.6 18.0 98 388-489 280-389 (398)
466 KOG3616 Selective LIM binding 61.3 15 0.00033 39.7 5.4 41 421-462 7-47 (1636)
467 PF14761 HPS3_N: Hermansky-Pud 61.2 47 0.001 30.7 7.9 57 392-449 21-79 (215)
468 PF07676 PD40: WD40-like Beta 58.5 44 0.00095 21.1 5.6 29 386-414 6-38 (39)
469 PF08801 Nucleoporin_N: Nup133 58.4 1.4E+02 0.003 30.7 12.1 31 429-460 190-220 (422)
470 PF11538 Snurportin1: Snurport 58.2 15 0.00032 24.1 3.0 23 48-71 4-26 (40)
471 COG4247 Phy 3-phytase (myo-ino 57.9 1.8E+02 0.0038 27.8 18.2 40 284-324 55-94 (364)
472 TIGR03548 mutarot_permut cycli 55.1 2.2E+02 0.0047 28.0 17.2 41 451-491 271-313 (323)
473 smart00564 PQQ beta-propeller 54.5 26 0.00057 21.0 3.8 25 441-465 6-30 (33)
474 PF10433 MMS1_N: Mono-function 54.1 2.9E+02 0.0063 29.1 21.4 79 401-480 224-309 (504)
475 KOG4460 Nuclear pore complex, 53.1 76 0.0017 33.3 8.6 75 390-464 105-203 (741)
476 TIGR03075 PQQ_enz_alc_DH PQQ-d 52.2 2.5E+02 0.0055 29.9 13.0 64 400-464 121-194 (527)
477 COG4590 ABC-type uncharacteriz 50.4 60 0.0013 33.3 7.3 60 401-462 330-389 (733)
478 PF11635 Med16: Mediator compl 50.3 4.1E+02 0.0089 29.8 15.8 66 388-454 259-345 (753)
479 PF14727 PHTB1_N: PTHB1 N-term 50.3 3.1E+02 0.0067 28.3 17.6 140 352-491 35-195 (418)
480 PF07250 Glyoxal_oxid_N: Glyox 49.9 26 0.00057 33.1 4.6 79 412-491 49-138 (243)
481 PHA02790 Kelch-like protein; P 49.6 3.3E+02 0.0072 28.6 16.4 85 401-491 365-456 (480)
482 KOG1898 Splicing factor 3b, su 47.3 3.6E+02 0.0078 31.1 13.1 42 284-325 582-629 (1205)
483 KOG3616 Selective LIM binding 46.7 38 0.00083 36.8 5.5 95 388-486 14-113 (1636)
484 KOG1898 Splicing factor 3b, su 45.7 5.3E+02 0.012 29.8 16.8 85 394-482 939-1031(1205)
485 PF10214 Rrn6: RNA polymerase 45.5 4.9E+02 0.011 29.3 18.4 105 386-490 77-223 (765)
486 PF12341 DUF3639: Protein of u 45.5 59 0.0013 19.3 3.9 25 430-457 3-27 (27)
487 KOG3611 Semaphorins [Signal tr 42.2 2.3E+02 0.005 31.6 10.9 77 377-455 397-489 (737)
488 PF03088 Str_synth: Strictosid 41.4 70 0.0015 25.1 5.1 43 404-447 32-74 (89)
489 PF14779 BBS1: Ciliary BBSome 41.1 2E+02 0.0042 27.5 8.9 70 387-456 175-255 (257)
490 PF10433 MMS1_N: Mono-function 41.1 4.5E+02 0.0098 27.7 19.4 69 409-480 427-503 (504)
491 PF01436 NHL: NHL repeat; Int 40.9 75 0.0016 18.6 4.1 24 431-455 4-27 (28)
492 PF01011 PQQ: PQQ enzyme repea 39.6 61 0.0013 20.5 3.8 23 443-465 2-24 (38)
493 PF03022 MRJP: Major royal jel 39.1 3.7E+02 0.008 26.1 19.5 60 429-489 186-254 (287)
494 PF05935 Arylsulfotrans: Aryls 36.4 5.1E+02 0.011 27.2 12.2 93 394-490 153-290 (477)
495 TIGR02608 delta_60_rpt delta-6 32.7 61 0.0013 22.8 3.1 19 472-490 2-20 (55)
496 PF13570 PQQ_3: PQQ-like domai 32.5 77 0.0017 20.1 3.5 21 440-460 20-40 (40)
497 PF08801 Nucleoporin_N: Nup133 31.7 5.8E+02 0.013 26.1 12.8 31 389-419 190-221 (422)
498 PF13449 Phytase-like: Esteras 31.6 5.1E+02 0.011 25.5 20.8 59 387-446 145-231 (326)
499 KOG2063 Vacuolar assembly/sort 31.5 8.2E+02 0.018 27.9 13.0 75 241-318 20-100 (877)
500 PF05935 Arylsulfotrans: Aryls 30.8 6.5E+02 0.014 26.4 17.1 37 430-466 272-308 (477)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-52 Score=427.50 Aligned_cols=437 Identities=42% Similarity=0.693 Sum_probs=310.9
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCCCCCCCcccccccccccCCccccccCCCCChHHHHHHHHHHhccccccc-
Q 011126 1 MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQS- 79 (493)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (493)
|+.+.+|| ||+|||+.|+++. . |+||+..|+||.|||+|||++|| |+..
T Consensus 1 ~~~~~~ee-~~~f~~~~~~~~~-----------------------~----~~~w~~~p~sv~err~~~l~~mg--ls~~~ 50 (712)
T KOG0283|consen 1 MGAPGEEE-EDRFFDASERVSP-----------------------D----YDLWTSSPGSVSERRRKFLNGMG--LSSKK 50 (712)
T ss_pred CCCccccc-cccccccccccCc-----------------------c----hhhhhcCccchhHHHHHHhhhhc--ccccc
Confidence 55666644 4999999999961 0 99999999999999999999999 6643
Q ss_pred cccccCCC-cccccccccccccccccCCceeccCCCCCCcccccCCCCccCCCCccccccccccCCcceeeeecCCCcee
Q 011126 80 LMNAEDLE-DESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADL 158 (493)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~g~~~ 158 (493)
.+...++. ..+....+.++.-... ..|.....-..+..+ .+|....+ .-..+.. ++.|.++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~-~~s~~~~~-------------~~~~~~~--~~~~~e~ 112 (712)
T KOG0283|consen 51 TLSRSETVDRLSSSSVESNVDESNH--NSVEDTDSEQCRPSS-SSSKSRVS-------------QSSSSIE--LDTGDEF 112 (712)
T ss_pred ccccccccccccccccccccccccc--ccccccccccCCccc-cccccccc-------------cccccee--eccccee
Confidence 23222211 1111111111100000 001000000000001 11111100 0011111 6899999
Q ss_pred EEccCCCchhhhhccccccCCCcccccccccCCCCCCccccccCCcccccc--------ccchhh-----hhhhhccccc
Q 011126 159 VVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEE--------SRDLVD-----AKRKVKRGWL 225 (493)
Q Consensus 159 v~~~~~~~~~~~~~~lr~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~--------~~~~~~-----~~~~~k~~w~ 225 (493)
++.+...+++++. +.+++.+..+.+++|+...+.++. +.+++.++..+ .....+ ..++....|+
T Consensus 113 ~v~e~~~~~~~~~--~sd~~~~~~~~~e~~e~~~g~~~~-v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l 189 (712)
T KOG0283|consen 113 SVSENPEDGSVNR--LSDVGTGASSTLEELESSPGESSR-VKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWL 189 (712)
T ss_pred eEeeccCcccccc--ccCCCcccccccccccCCcCcccc-hhhhhhhcccccchhhcccccccccccccchhhhhhhhhh
Confidence 9999999999987 899999999999999999987887 88887765442 111111 1333445588
Q ss_pred cccCceeeeeccccc---ceeccCCCe-----E--EeeecC--------CeEEEEECCCccccccccccceeee-cccCC
Q 011126 226 KKLGAMARIIDRHGS---ATLKPGDHE-----L--TLGQRM--------RRVRVHPVKKQSRELSSLYTGQEFL-AHEGS 286 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~---~~fsp~g~~-----l--asgs~d--------g~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~ 286 (493)
+.++.+.+..+.... ..+..+..- + .++..+ ..+++-...+..+++..++..|+++ +|.++
T Consensus 190 ~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~ga 269 (712)
T KOG0283|consen 190 KSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGA 269 (712)
T ss_pred hhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCc
Confidence 888777666554311 111111111 1 111111 5788888888999999999999999 99999
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccC-ccccceeeeecCCCce
Q 011126 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-EKIDKTKSLRKSSDLT 365 (493)
Q Consensus 287 I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~ 365 (493)
|++|+|++||+|||+||+||.||||.+...+. +........++.+.......+-+..... ................
T Consensus 270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred EEEEEeCCCCceeeecCCCceEEEEEEeccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 99999999999999999999999999976554 3333344445555444444433333333 2222333344455555
Q ss_pred EEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEE
Q 011126 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~ 445 (493)
++..+.+.+.+.++|++.+.||.+.|.+|+|+.+++|+++++|+|||||++....|+++|.|.++||||+|+|.|.+||+
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFi 426 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFI 426 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEe
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 446 sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+|+.||+||||++...+++.|.+..+.|+++||+|||++.++|+-+
T Consensus 427 SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 427 SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 9999999999999999999999999999999999999999999754
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-34 Score=269.82 Aligned_cols=307 Identities=21% Similarity=0.294 Sum_probs=242.9
Q ss_pred CcceeeeecCCCceeE-EccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhh
Q 011126 144 HAACRIDDWGKGADLV-VSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK 219 (493)
Q Consensus 144 ~~~~~~~~ld~g~~~v-~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~ 219 (493)
+..-++||+++.+..- |++ |.+- |.-|.| |+.|+...-++++. +|.-...+.. ..
T Consensus 136 D~TvR~WD~~TeTp~~t~Kg-----H~~W--VlcvawsPDgk~iASG~~dg~I~-----lwdpktg~~~-g~-------- 194 (480)
T KOG0271|consen 136 DTTVRLWDLDTETPLFTCKG-----HKNW--VLCVAWSPDGKKIASGSKDGSIR-----LWDPKTGQQI-GR-------- 194 (480)
T ss_pred CceEEeeccCCCCcceeecC-----CccE--EEEEEECCCcchhhccccCCeEE-----EecCCCCCcc-cc--------
Confidence 4457999999887644 665 3333 667777 88888888887777 6664443322 12
Q ss_pred hccccccccCceeeeeccccccee-----ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc
Q 011126 220 VKRGWLKKLGAMARIIDRHGSATL-----KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL 294 (493)
Q Consensus 220 ~k~~w~~~~~~~~~~~~~~~~~~f-----sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp 294 (493)
.+.+|..-+.+++| .|..++||+++.||.|+|||+..+.. ...+.+|+.+|+|++|--
T Consensus 195 ----------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-------~~~lsgHT~~VTCvrwGG 257 (480)
T KOG0271|consen 195 ----------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-------VRTLSGHTASVTCVRWGG 257 (480)
T ss_pred ----------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-------EEEeccCccceEEEEEcC
Confidence 23344444555554 45677999999999999999885443 335789999999999975
Q ss_pred CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcc--------------------ccc
Q 011126 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK--------------------IDK 354 (493)
Q Consensus 295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 354 (493)
+| +|++|+.|++|++|+...|.+...++.|..-++.+.++....-..-+++-.... ...
T Consensus 258 ~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 258 EG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred Cc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 55 899999999999999999999999999988777776653321111111111111 011
Q ss_pred eeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEE
Q 011126 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT 432 (493)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~ 432 (493)
-....++.+..+++|.+... .+|+..+.+|..-|+.+.|+|++ ++|+++.|+.|+|||.++++.+.+|. |-+.|+
T Consensus 337 erlVSgsDd~tlflW~p~~~---kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY 413 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKS---KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY 413 (480)
T ss_pred ceeEEecCCceEEEeccccc---ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeE
Confidence 34678899999999987543 46788899999999999999999 99999999999999999999999998 999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 433 ~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.|+|+. |.++|++|+.|.++++|++++.++. .+.+|.+.|.++.|+|||+.+++|+.|++
T Consensus 414 qvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv 474 (480)
T KOG0271|consen 414 QVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKV 474 (480)
T ss_pred EEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceE
Confidence 999999 9999999999999999999999987 58999999999999999999999999975
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.1e-34 Score=269.88 Aligned_cols=238 Identities=21% Similarity=0.341 Sum_probs=213.1
Q ss_pred cCceeeeecccccceeccC--CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126 228 LGAMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D 305 (493)
+..+.+|...+.++.|+|. +..+|+++.||+|++|++... ...+.+.+|...|..++|+|+|++|+|++.|
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD 282 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-------TPLQDLEGHLARVSRVAFHPSGKFLGTASFD 282 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-------cchhhhhcchhhheeeeecCCCceeeecccc
Confidence 3457788889999999998 569999999999999998754 2445789999999999999999999999999
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
.+-++||+.++..+.....|...+.++.|.+++. ...+++.|....+|+.+..+ .+..+.
T Consensus 283 ~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS----------------L~~tGGlD~~~RvWDlRtgr----~im~L~ 342 (459)
T KOG0272|consen 283 STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS----------------LAATGGLDSLGRVWDLRTGR----CIMFLA 342 (459)
T ss_pred cchhhcccccchhhHhhcccccccceeEecCCCc----------------eeeccCccchhheeecccCc----EEEEec
Confidence 9999999999999888888888888888877662 23466777778888887644 478899
Q ss_pred cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
+|..+|.+++|+|+| .||||+.|++++|||++...++.++. |.+-|+.|.|.|..|.+|+|++.|++++||...+.++
T Consensus 343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence 999999999999999 99999999999999999999988886 9999999999998899999999999999999999998
Q ss_pred EE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 464 VD-YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 464 ~~-~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+. +.+|.+.|.++.++|||+++++++-|.
T Consensus 423 ~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 423 LKSLAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred chhhcCCccceEEEEeccCCceEEEeccCc
Confidence 85 899999999999999999999999874
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=258.30 Aligned_cols=246 Identities=21% Similarity=0.363 Sum_probs=208.2
Q ss_pred ccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (493)
.+....+.+|...+-+++|+|+|..||+|+.|.++++||+.+.. +..+.++|...|.|++|+|||+.||+|+.
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCcchhhcccc
Confidence 34556788899999999999999999999999999999988654 33457899999999999999999999999
Q ss_pred CCcEEEEecCCCeee-eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 305 DGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 305 Dg~V~iWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
||+|++||..+++++ ..+..|...+.++.|.+.+... ........+.|+.+.+|+.... +.+..
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-----------~~r~las~skDg~vrIWd~~~~----~~~~~ 242 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-----------PCRRLASSSKDGSVRIWDTKLG----TCVRT 242 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCC-----------CccceecccCCCCEEEEEccCc----eEEEE
Confidence 999999999988765 5577888888888887665321 1114567788999999988753 44788
Q ss_pred EecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEE----------------------------------------
Q 011126 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR---------------------------------------- 423 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~---------------------------------------- 423 (493)
+.||+.+|+|+.|-.+|+|++|+.|++|++|+...+.+.+
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 9999999999999988899999999999999865432100
Q ss_pred ----------------------------------------EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 424 ----------------------------------------VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 424 ----------------------------------------~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
...|..-|+.+.|+| |++|+|+++.|..|++||.++|+.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcch
Confidence 012777899999999 999999999999999999999998
Q ss_pred E-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 464 V-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 464 ~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
+ .+.+|-..|..++|+.|.++|++++.|.+
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCCCce
Confidence 8 58899999999999999999999998864
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=1.8e-31 Score=271.81 Aligned_cols=238 Identities=27% Similarity=0.416 Sum_probs=209.1
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCcc-------cccc-----------------ccccceeeecccCCEEE
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-------RELS-----------------SLYTGQEFLAHEGSILT 289 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~-------~~~~-----------------~~~~~~~l~~H~~~I~~ 289 (493)
....+.|..|++++.+||.|-.|-.|++|.+...+ ..+. ......++.+|.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34567789999999999999999999999988422 0111 11122458899999999
Q ss_pred EEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEc
Q 011126 290 MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL 369 (493)
Q Consensus 290 l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 369 (493)
+.|+|+.++|+++++|++||+|.+.+..++..++.|..+++.+.|++.+ ..+++++.|.+..+|
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G----------------yYFatas~D~tArLW 520 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG----------------YYFATASHDQTARLW 520 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc----------------eEEEecCCCceeeee
Confidence 9999999999999999999999999999999999999999988887653 445566778888888
Q ss_pred CCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEE
Q 011126 370 PPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sg 447 (493)
...- .+|++.+.||.+.|.|+.|+|+. |++|||.|.+||+||+.++..++.|. |.++|++++|+| +|++|++|
T Consensus 521 s~d~----~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg 595 (707)
T KOG0263|consen 521 STDH----NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASG 595 (707)
T ss_pred eccc----CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeec
Confidence 7654 46788999999999999999998 99999999999999999999999997 999999999999 99999999
Q ss_pred eCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 448 SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 448 s~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+.||.|.|||+.+++++ .+.+|.+.|.++.|+.||..||+++.|.
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence 99999999999998877 6899999999999999999999999874
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2e-31 Score=253.69 Aligned_cols=230 Identities=22% Similarity=0.325 Sum_probs=199.9
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECCCcEEEEec
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~V~iWdl 313 (493)
..+..+.|++++..||||+.+|.++||+.... ...++|.+|+..|.++.|+|. +..||||+.||+|++|++
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCc-------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 34555889999999999999999999998743 355689999999999999996 669999999999999999
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (493)
.+...+..+..|...+..+.|.+++.. ..+++-|.+-.+|+.... ..+....||...|.+
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~----------------L~TasfD~tWRlWD~~tk----~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKF----------------LGTASFDSTWRLWDLETK----SELLLQEGHSKGVFS 308 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCce----------------eeecccccchhhcccccc----hhhHhhcccccccce
Confidence 999999999999888888888877643 234455555566665442 335567899999999
Q ss_pred EEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCC
Q 011126 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR 470 (493)
Q Consensus 394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~ 470 (493)
++|.|+| +++||+.|..-||||+++++++..+. |...|.+|.|+| +|..|||||.|++++|||++..+.+ .+..|.
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~ 387 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHS 387 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceeccccc
Confidence 9999999 99999999999999999999999997 999999999999 9999999999999999999988766 588999
Q ss_pred CCeEEEEEcc-CCCEEEEeecCCC
Q 011126 471 EIVSAVCYCP-DGKVRQNSACNFC 493 (493)
Q Consensus 471 ~~I~sv~~sp-dG~~l~s~s~d~~ 493 (493)
+-|+.|+|+| .|.+|++++-|.|
T Consensus 388 nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 388 NLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred chhhheEecccCCeEEEEcccCcc
Confidence 9999999999 7889999988764
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.1e-29 Score=244.76 Aligned_cols=272 Identities=21% Similarity=0.361 Sum_probs=210.5
Q ss_pred ccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeEEE
Q 011126 182 SVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRV 261 (493)
Q Consensus 182 ~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~v 261 (493)
.++..+++.+.. +|.|..........+ ..+...... +.-......+++++|+.+|.+||+|+.+|.++|
T Consensus 193 llasg~~~s~ar-----i~~l~e~~~~~~~q~-~lrh~~~~~-----~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ri 261 (524)
T KOG0273|consen 193 LLASGSGDSTAR-----IWNLLENSNIGSTQL-VLRHCIREG-----GKSVPSNKDVTSLDWNNDGTLLATGSEDGEARI 261 (524)
T ss_pred hhhccCCcccee-----eeeehhhccccchhh-hhhhhhhhh-----cccCCccCCcceEEecCCCCeEEEeecCcEEEE
Confidence 567777777777 777665322221111 111111100 111112356777999999999999999999999
Q ss_pred EECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCc
Q 011126 262 HPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341 (493)
Q Consensus 262 wd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (493)
|+..... ..+|..|+++|.+|+|+.+|.||++++.|+++.+||..++...+.+..+..+...+.|..+.
T Consensus 262 w~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--- 330 (524)
T KOG0273|consen 262 WNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--- 330 (524)
T ss_pred EecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc---
Confidence 9986543 22467799999999999999999999999999999999999988888877664434433222
Q ss_pred eeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc
Q 011126 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR 420 (493)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~ 420 (493)
.+...+.++.+.++.... ..|+.++.||.+.|.+|.|+|.| +|++++.|+|++||.+....
T Consensus 331 --------------~F~ts~td~~i~V~kv~~----~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 331 --------------EFATSSTDGCIHVCKVGE----DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred --------------eEeecCCCceEEEEEecC----CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 123344454555543332 46789999999999999999999 99999999999999999888
Q ss_pred EEEEec-CCCcEEEEEEccC--------CCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeec
Q 011126 421 CLRVFS-HNNYVTSVAFNPV--------DDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 421 ~~~~~~-h~~~V~~v~fsp~--------d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+...+. |...|..+.|+|. .+..+++++.|++|++||+..+.++. +.+|..+|.+++|+|+|+++++|+-
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence 888886 9999999999884 34589999999999999999999884 7799999999999999999999999
Q ss_pred CCC
Q 011126 491 NFC 493 (493)
Q Consensus 491 d~~ 493 (493)
|+|
T Consensus 473 dg~ 475 (524)
T KOG0273|consen 473 DGC 475 (524)
T ss_pred CCe
Confidence 886
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=3.2e-28 Score=220.88 Aligned_cols=238 Identities=19% Similarity=0.320 Sum_probs=196.5
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (493)
.+.+.+|...+..+.++++|++.++++.|+++++||+.... ..+.|.+|...|.+++|++|.+.|++|+.|.+
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT 128 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT 128 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc-------EEEEEEecCCceEEEEecCCCceeecCCCcce
Confidence 44577888889999999999999999999999999988553 34568999999999999999999999999999
Q ss_pred EEEEecCCCeeeeeeecc-CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 308 VRVWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
|++|++............ ..-+.|+.|.|+....+ ++..+-|..+.+|+....++ .+.+.|
T Consensus 129 iklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~--------------Ivs~s~DktvKvWnl~~~~l----~~~~~g 190 (315)
T KOG0279|consen 129 IKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI--------------IVSASWDKTVKVWNLRNCQL----RTTFIG 190 (315)
T ss_pred eeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE--------------EEEccCCceEEEEccCCcch----hhcccc
Confidence 999998655443333332 56678888888774433 34677888999999887665 567889
Q ss_pred CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 387 h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
|++.++.++++|+| ++++|+.||.+.+||++.++++..+.|...|.+++|+| + +|.+....+..|+|||+.++.++.
T Consensus 191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-n-rywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-N-RYWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC-C-ceeEeeccCCceEEEeccchhhhh
Confidence 99999999999999 99999999999999999999999999999999999999 5 455555566679999999987763
Q ss_pred -----ecCC-----CCCeEEEEEccCCCEEEEeecCC
Q 011126 466 -----YTDI-----REIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 466 -----~~~~-----~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
..+. .-...+++|++||+.|.+|-.|.
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 1222 22467889999999999987764
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=4e-28 Score=221.48 Aligned_cols=235 Identities=20% Similarity=0.372 Sum_probs=199.8
Q ss_pred CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
+.+.+|..++.++.|+++.++|++++.||.+.|||.-+..+. +.+.--...|..++|+|.|+++|+|+-|...
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-------haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-------HAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-------eEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 568899999999999999999999999999999998755543 2345567899999999999999999999999
Q ss_pred EEEecCCC------eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126 309 RVWKVIEH------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 309 ~iWdl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
.||++.+. ...+.+..+..-..|..|..+ ..+++++.|.+|.+|+.... +.+.
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-----------------~~ilT~SGD~TCalWDie~g----~~~~ 180 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-----------------NHILTGSGDMTCALWDIETG----QQTQ 180 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCC-----------------CceEecCCCceEEEEEcccc----eEEE
Confidence 99999855 233445556555555555442 23468899999999998764 3478
Q ss_pred EEecCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 383 EFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 383 ~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
.|.||.+.|.+|+++| ++ .+++|+-|++.+|||++.+.+.++|. |...|++|.|.| +|.-|++|+.|++.|+||++
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeec
Confidence 8999999999999999 55 99999999999999999999999997 999999999999 99999999999999999999
Q ss_pred CCeEEEe---cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 460 RCQVVDY---TDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 460 ~~~~~~~---~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
..+.+.. .....+|++++|+-.|++|.+|..|+
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence 8766543 33456899999999999999998776
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=5.7e-28 Score=219.27 Aligned_cols=238 Identities=21% Similarity=0.312 Sum_probs=203.7
Q ss_pred cCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126 228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (493)
.+.+.+|.+-+..++..+.+ ..++++++|.++.+|++......+ ....+.+.||...|..+..++||++.++++.|+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~--G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY--GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc--CceeeeeeccceEecceEEccCCceEEeccccc
Confidence 34677788888888887774 577889999999999998764333 234567899999999999999999999999999
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
++|+||+.+++....+..|...+.++.+.++.. ..+.++.|.++.+|+... ....++..
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~----------------qivSGSrDkTiklwnt~g-----~ck~t~~~ 144 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR----------------QIVSGSRDKTIKLWNTLG-----VCKYTIHE 144 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCc----------------eeecCCCcceeeeeeecc-----cEEEEEec
Confidence 999999999999999999999988888877653 345788888888887643 22333333
Q ss_pred --CCCCEeEEEEeCC--C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 387 --HSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 387 --h~~~V~~l~~sp~--g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
|.+.|.|+.|+|+ . +|++++.|++|++||+++.+....+. |.++++.++++| ||.++++|+.||.+.+||++.
T Consensus 145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE 223 (315)
T ss_pred CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC
Confidence 3789999999998 4 99999999999999999998888775 999999999999 999999999999999999999
Q ss_pred CeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 461 CQVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
++.+...++...|.+++|+|+.-.|..+.
T Consensus 224 ~k~lysl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 224 GKNLYSLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred CceeEeccCCCeEeeEEecCCceeEeecc
Confidence 99999999999999999999988776654
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6e-28 Score=218.26 Aligned_cols=260 Identities=20% Similarity=0.219 Sum_probs=212.3
Q ss_pred cceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhc
Q 011126 145 AACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVK 221 (493)
Q Consensus 145 ~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k 221 (493)
-..+|+++..|..|.|+....++|.++ ||.++| |++|+.++|+.+.. ||+-..+++++...++++++++|
T Consensus 37 k~vriw~~~~~~s~~ck~vld~~hkrs--VRsvAwsp~g~~La~aSFD~t~~-----Iw~k~~~efecv~~lEGHEnEVK 109 (312)
T KOG0645|consen 37 KAVRIWSTSSGDSWTCKTVLDDGHKRS--VRSVAWSPHGRYLASASFDATVV-----IWKKEDGEFECVATLEGHENEVK 109 (312)
T ss_pred ceEEEEecCCCCcEEEEEeccccchhe--eeeeeecCCCcEEEEeeccceEE-----EeecCCCceeEEeeeecccccee
Confidence 346889988888899999999999999 999999 99999999999999 99999999999998888887776
Q ss_pred cccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE
Q 011126 222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301 (493)
Q Consensus 222 ~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las 301 (493)
+ ++|+++|.+||++++|+.|-||...... .+.+...++.|+..|..+.|+|...+|++
T Consensus 110 ~------------------Vaws~sG~~LATCSRDKSVWiWe~dedd----Efec~aVL~~HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 110 C------------------VAWSASGNYLATCSRDKSVWIWEIDEDD----EFECIAVLQEHTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred E------------------EEEcCCCCEEEEeeCCCeEEEEEecCCC----cEEEEeeeccccccccEEEEcCCcceeEE
Confidence 6 8999999999999999999999987332 34455678999999999999999999999
Q ss_pred EECCCcEEEEecC---CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 302 GGEDGTVRVWKVI---EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 302 gs~Dg~V~iWdl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
+++|.+|++|+-. ...+.+++..+...+.++.|.+.+. .....+.+.++.+|...
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~----------------rl~s~sdD~tv~Iw~~~------ 225 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS----------------RLVSCSDDGTVSIWRLY------ 225 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc----------------eEEEecCCcceEeeeec------
Confidence 9999999999875 3456777777776666666654442 23345566666666432
Q ss_pred cceEEE-ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcE---EEE-----ecCCCcEEEEEEccCCCCEEEEEeC
Q 011126 379 KPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRV-----FSHNNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 379 ~~~~~~-~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~---~~~-----~~h~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
..+ .-|..+++.++|. +|.|++++.|+.|+|+....... ... ..|...|++|+|+|...+.|++|+.
T Consensus 226 ---~~~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D 301 (312)
T KOG0645|consen 226 ---TDLSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD 301 (312)
T ss_pred ---cCcchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC
Confidence 111 2388999999999 77999999999999998764311 111 1289999999999955889999999
Q ss_pred CCeEEEEeCC
Q 011126 450 DGKVRIWEVR 459 (493)
Q Consensus 450 Dg~V~IWdl~ 459 (493)
||.|++|.+.
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999874
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=3e-27 Score=215.80 Aligned_cols=277 Identities=18% Similarity=0.249 Sum_probs=223.9
Q ss_pred hhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeeccccccee
Q 011126 167 EIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATL 243 (493)
Q Consensus 167 ~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~f 243 (493)
||.++ |..+.| .|.|-.++-++.+- ||......- .+.-+....| |...+|
T Consensus 53 GH~~K--i~~~~ws~Dsr~ivSaSqDGklI-----vWDs~TtnK-------~haipl~s~W-------------VMtCA~ 105 (343)
T KOG0286|consen 53 GHLNK--IYAMDWSTDSRRIVSASQDGKLI-----VWDSFTTNK-------VHAIPLPSSW-------------VMTCAY 105 (343)
T ss_pred ccccc--eeeeEecCCcCeEEeeccCCeEE-----EEEcccccc-------eeEEecCcee-------------EEEEEE
Confidence 56665 666666 55666666665544 776554321 1111222333 223799
Q ss_pred ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeee
Q 011126 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (493)
Q Consensus 244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~ 323 (493)
+|.|+++|+|+.|+...||++.....+- .....+++.+|++-+.|+.|-+|+ .|+|++.|.++.+||+++++.+..+.
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g-~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEG-NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccc-cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec
Confidence 9999999999999999999998553322 233456789999999999998855 68899999999999999999999999
Q ss_pred ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE
Q 011126 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL 402 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l 402 (493)
.|...+..+.+.+... ..++.++.|....+|+.+.. ..++.|.+|...|+.++|.|+| -+
T Consensus 184 GH~gDV~slsl~p~~~---------------ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~af 244 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDG---------------NTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAF 244 (343)
T ss_pred CCcccEEEEecCCCCC---------------CeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCee
Confidence 8888877777766432 23456778888889988764 4588999999999999999999 99
Q ss_pred EEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEE
Q 011126 403 LSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY 478 (493)
Q Consensus 403 ~sgs~Dg~V~lWd~~~~~~~~~~~h~---~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~ 478 (493)
++|+.|++.|+||++..+.+..+.|. .+|++++|+- .|++|.+|..|.++.+||.-.++.+ .+.+|.+.|+++..
T Consensus 245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV 323 (343)
T ss_pred eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE
Confidence 99999999999999999999999854 5899999999 9999999999999999999888777 68999999999999
Q ss_pred ccCCCEEEEeecCC
Q 011126 479 CPDGKVRQNSACNF 492 (493)
Q Consensus 479 spdG~~l~s~s~d~ 492 (493)
+|||.-+++|+-|.
T Consensus 324 s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 324 SPDGMAVATGSWDS 337 (343)
T ss_pred CCCCcEEEecchhH
Confidence 99999999998764
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=5.2e-27 Score=214.99 Aligned_cols=257 Identities=21% Similarity=0.316 Sum_probs=199.3
Q ss_pred cccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D 305 (493)
..+..+.+|...+..+.|+|+|.+||+|+.|..|.+|++....+.+. .+++|.++|..+.|.+|+..|++++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------~lkgHsgAVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW------VLKGHSGAVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee------eeccccceeEeeeeccCCCEEEEecCC
Confidence 34455778888899999999999999999999999999765554443 467999999999999999999999999
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEE---------eeCCCCceeeeeccCcccc-----------------ceeeee
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYF---------TINHLSQLIPIDVDKEKID-----------------KTKSLR 359 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 359 (493)
.+|+.||+.++++++.++.+..-+..+.. +......+..++.-.+... ......
T Consensus 112 k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred ceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceee
Confidence 99999999999999988877654443331 1111112222221111000 011133
Q ss_pred cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECC----CCcEEEEec---CC--C
Q 011126 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG----IDRCLRVFS---HN--N 429 (493)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~----~~~~~~~~~---h~--~ 429 (493)
+.-+..+.+|+++.. ...+.+.||...|+.|..+|.| ++++-++|.+|++||++ ..+|+..+. |. .
T Consensus 192 ggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred ccccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence 444455555555432 3478899999999999999999 99999999999999997 456787775 33 3
Q ss_pred cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 430 ~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
....++|+| +++++.+|+.|..+++||.....++ .+.+|.+.|+.+.|+|...+|+++++|++
T Consensus 268 nlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 268 NLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred hcceeeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence 456789999 9999999999999999999986655 79999999999999999999999999974
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.8e-26 Score=233.43 Aligned_cols=235 Identities=23% Similarity=0.376 Sum_probs=190.5
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
+.++|.+.+.+++++|||+++|+|+.||.|+|||.. ..++..+|..|+..|+.++|+..|+.|++.+-||+||
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-------SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-------SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVR 417 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEecc-------CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEE
Confidence 467889999999999999999999999999999976 3346668999999999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
.||+......+++..+... ....++.+..+.+++. ..-....+.+|..+..+ .+..+.||.+
T Consensus 418 AwDlkRYrNfRTft~P~p~-QfscvavD~sGelV~A-------------G~~d~F~IfvWS~qTGq----llDiLsGHEg 479 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSPEPI-QFSCVAVDPSGELVCA-------------GAQDSFEIFVWSVQTGQ----LLDILSGHEG 479 (893)
T ss_pred eeeecccceeeeecCCCce-eeeEEEEcCCCCEEEe-------------eccceEEEEEEEeecCe----eeehhcCCCC
Confidence 9999999888888766432 2222333333333322 22334467777766544 3677899999
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCC-CcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-- 465 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~-~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-- 465 (493)
+|.+|+|+|.+ .|++++.|+|||+||+-. ...+.++.+...+..++|.| +|.-|++++.||.|.+||+..+..+.
T Consensus 480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeeccc
Confidence 99999999999 999999999999999864 45677888999999999999 99999999999999999998654331
Q ss_pred -------------------ecCCCCCeEEEEEccCCCEEEEeec
Q 011126 466 -------------------YTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 466 -------------------~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.......+++|+|++||..+++||.
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 0112357999999999999999875
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=1.2e-26 Score=236.61 Aligned_cols=231 Identities=20% Similarity=0.327 Sum_probs=199.2
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+|...|....|+|+.++|++++.|++||+|.+.... +.-.+.||..+|+.+.|+|.|-|+|||+.|++.+
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccce-------eEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 377899999999999999999999999999999987443 3335789999999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+|........+.+..+...+.|+.|.|+.. ...+++.+.++.+|+.... ..++.|.||.+
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~----------------Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~ 578 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSN----------------YVATGSSDRTVRLWDVSTG----NSVRIFTGHKG 578 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCccc----------------ccccCCCCceEEEEEcCCC----cEEEEecCCCC
Confidence 999999999999999999999999988763 2356788999999988654 34888999999
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE----
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV---- 463 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~---- 463 (493)
+|++|+|+|+| +|++|+.|+.|+|||+.++..+..+. |++.|+++.|+. +|..||+|+.|.+|++||+.....
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~~~~~~ 657 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVIELLNL 657 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhcccccc
Confidence 99999999999 99999999999999999999888875 999999999999 999999999999999999863211
Q ss_pred --------------------E-EecCCCCCeEEEEEccCCCEEEEe
Q 011126 464 --------------------V-DYTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 464 --------------------~-~~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
+ .+..-..+|..+.|.--...|++|
T Consensus 658 ~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 658 GHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 1 223334578888888877555554
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=2e-27 Score=225.51 Aligned_cols=234 Identities=18% Similarity=0.282 Sum_probs=201.1
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEECCCcEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
+..|...|.++.|+++|.++++|..+|.|++|+..-.. .+.+++|. ..|++++|+|+...+++|+.||+|+
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence 34567788889999999999999999999999875332 23455555 9999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
|||....+.-..+..+.-.+.++.|.+.. ...+.++.+..+.+|+++.. .++.++.+|..
T Consensus 206 iWdf~~~kee~vL~GHgwdVksvdWHP~k----------------gLiasgskDnlVKlWDprSg----~cl~tlh~HKn 265 (464)
T KOG0284|consen 206 IWDFRMPKEERVLRGHGWDVKSVDWHPTK----------------GLIASGSKDNLVKLWDPRSG----SCLATLHGHKN 265 (464)
T ss_pred EEeccCCchhheeccCCCCcceeccCCcc----------------ceeEEccCCceeEeecCCCc----chhhhhhhccc
Confidence 99998888777778887777777775543 33456777888999999874 45888999999
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-- 465 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-- 465 (493)
.|..+.|+|++ +|+|++.|..++++|+++.+.+.+++ |...|+++.|+|....+|++|+.||.|..|.+...+.+.
T Consensus 266 tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 266 TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence 99999999999 99999999999999999888888887 999999999999999999999999999999998555553
Q ss_pred ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 466 YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 466 ~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
-..|...|++++|+|=|.+|++|+.|.
T Consensus 346 ~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 346 PPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred CcccccceeeeeccccceeEeecCCCc
Confidence 466888999999999999999988775
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.7e-26 Score=215.13 Aligned_cols=236 Identities=20% Similarity=0.290 Sum_probs=198.9
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+|.+.+..++|+..|++||+++.|-.+++|+..+.. .+.+.+.+|...|.+++|-|.|.+|++++.|.+|+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~------~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF------RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHHH------HHHHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence 467788888889999999999999999999999987532 23345678999999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+|++.++.+++++..+..-+. .+.++.. .......+.+..+.+|..... .....+..|..
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr--~v~v~~D--------------Gti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh 278 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVR--MVRVNQD--------------GTIIASCSNDQTLRVWVVATK----QCKAELREHEH 278 (406)
T ss_pred EEecccceeEEeccCchHhEE--EEEecCC--------------eeEEEecCCCceEEEEEeccc----hhhhhhhcccc
Confidence 999999999999987766322 2223322 233456677778888866543 23456788999
Q ss_pred CEeEEEEeC--------------CC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126 390 EVLDLSWSK--------------NG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452 (493)
Q Consensus 390 ~V~~l~~sp--------------~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (493)
+|.+++|.| ++ ++++++.|++|++||+.++.|+.++. |.+.|..++|+| .|+||+++..|++
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKT 357 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCc
Confidence 999999966 22 89999999999999999999999986 999999999999 9999999999999
Q ss_pred EEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 453 VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 453 V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+++||+++++.+ .+..|..-++++.|+.+..++++|+-|.
T Consensus 358 lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 358 LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred EEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc
Confidence 999999999887 4788999999999999999999998653
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=5.1e-26 Score=219.47 Aligned_cols=202 Identities=25% Similarity=0.432 Sum_probs=172.9
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc----------------------------------c
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------S 273 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~----------------------------------~ 273 (493)
+..+.+|...+.++.|+..|.||++++.|+++.+||..+....-. .
T Consensus 269 ~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~ 348 (524)
T KOG0273|consen 269 ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGE 348 (524)
T ss_pred hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecC
Confidence 345677888899999999999999999999999999855332100 1
Q ss_pred cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccc
Q 011126 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (493)
Q Consensus 274 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (493)
-.+..++.+|.+.|.+|+|+|.|.+|++++.|++++||.......
T Consensus 349 ~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~----------------------------------- 393 (524)
T KOG0273|consen 349 DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS----------------------------------- 393 (524)
T ss_pred CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc-----------------------------------
Confidence 112346889999999999999999999999999999999755432
Q ss_pred ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC----------eEEEEeCCCeEEEEECCCCcEEE
Q 011126 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----------FLLSSSADKTVRLWQVGIDRCLR 423 (493)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g----------~l~sgs~Dg~V~lWd~~~~~~~~ 423 (493)
.+.+.+|...|..+.|+|.| .+++++.|++|++||+..+.+++
T Consensus 394 ---------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~ 446 (524)
T KOG0273|consen 394 ---------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH 446 (524)
T ss_pred ---------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE
Confidence 34466788888888888743 79999999999999999999999
Q ss_pred Ee-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 424 VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 424 ~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+| +|..+|.+++|+| +++|+|+|+.||.|.||+++++++++.....+.|..++|+.+|.+|.++.+|.
T Consensus 447 ~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 447 TLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred eeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCC
Confidence 99 6999999999999 99999999999999999999999998777788899999999999998877653
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=199.01 Aligned_cols=236 Identities=16% Similarity=0.306 Sum_probs=188.3
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
++......++.+.+.|+++.||+++. ..|++||+...... +..+|.+|+..|..+.|..+|+.+++|++||++|
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-----Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-----PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK 108 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-----ceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence 34444456677999999999999865 67999999876532 3447899999999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
|||++...+.+.+... .++.++...++. ...+.+..++.+.+|+.+.-.....++ .....
T Consensus 109 IWdlR~~~~qR~~~~~-spVn~vvlhpnQ----------------teLis~dqsg~irvWDl~~~~c~~~li---Pe~~~ 168 (311)
T KOG0315|consen 109 IWDLRSLSCQRNYQHN-SPVNTVVLHPNQ----------------TELISGDQSGNIRVWDLGENSCTHELI---PEDDT 168 (311)
T ss_pred EEeccCcccchhccCC-CCcceEEecCCc----------------ceEEeecCCCcEEEEEccCCccccccC---CCCCc
Confidence 9999987766666655 556666555443 334567778889999886543322221 22346
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc------EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR------CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~------~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
.|.+++..|+| +|+.+...|...+|++-+.. ++..|+ |..++..+.++| +++|||+++.|.+++||++.+.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc
Confidence 89999999999 99999999999999987643 333343 999999999999 9999999999999999999987
Q ss_pred -eEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 462 -QVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 462 -~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+.. .+.+|...++..+|+.||+||+++++|.
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 322 5788889999999999999999999874
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.1e-25 Score=200.73 Aligned_cols=201 Identities=24% Similarity=0.386 Sum_probs=168.2
Q ss_pred ccCceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCccccccccccceee-ecccCCEEEEEEccCCCEEEEEEC
Q 011126 227 KLGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGE 304 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~ 304 (493)
.+..+.+|.+++..++|+|. |..||+++.|+.|+||+..... .+.+...+ .+|+..|+.++|+|.|++||+|+.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~----s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD----SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC----cEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 44567778888888999999 9999999999999999987411 11111122 479999999999999999999999
Q ss_pred CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
|.++.||.-..++ .+.+..+
T Consensus 82 D~t~~Iw~k~~~e------------------------------------------------------------fecv~~l 101 (312)
T KOG0645|consen 82 DATVVIWKKEDGE------------------------------------------------------------FECVATL 101 (312)
T ss_pred cceEEEeecCCCc------------------------------------------------------------eeEEeee
Confidence 9999999743322 1225678
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC---cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~---~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
.||...|.+++|+++| +||||+.|+.|-||.+..+ .|+..+. |...|..+.|+| ...+|++++.|.+|++|+-.
T Consensus 102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeec
Confidence 9999999999999999 9999999999999999744 4666665 999999999999 89999999999999999877
Q ss_pred -CC--eEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 460 -RC--QVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 460 -~~--~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.. +++ .+.+|...|.+++|+|.|..|++++.|.
T Consensus 181 ~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 181 DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence 33 333 6888999999999999999999988775
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=4.2e-25 Score=197.61 Aligned_cols=228 Identities=21% Similarity=0.318 Sum_probs=177.3
Q ss_pred ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (493)
++.++.+|...+.++.|..+|+++++|+.||+++|||++... .+....|..+|+++..+|+...|++|..+|
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--------~qR~~~~~spVn~vvlhpnQteLis~dqsg 146 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--------CQRNYQHNSPVNTVVLHPNQTELISGDQSG 146 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--------cchhccCCCCcceEEecCCcceEEeecCCC
Confidence 445677788888899999999999999999999999988522 223455889999999999999999999999
Q ss_pred cEEEEecCCCeeeeeeecc-CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc--eeecccceEE
Q 011126 307 TVRVWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV--FRLLEKPLHE 383 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~ 383 (493)
.|+|||+.+..+...+-.. ...+..+.+.+++ .........+.|++|..-. ....-.|+..
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg----------------sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k 210 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG----------------SMLAAANNKGNCYVWRLLNHQTASELEPVHK 210 (311)
T ss_pred cEEEEEccCCccccccCCCCCcceeeEEEcCCC----------------cEEEEecCCccEEEEEccCCCccccceEhhh
Confidence 9999999877654433221 1222222222222 1223445566777776543 2223468889
Q ss_pred EecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC-cEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~-~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
++.|.+.|+...+||++ +|++++.|++++||+.... +.-..+ .|...++..+|+. +++||++|+.|+.+++|++..
T Consensus 211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred eecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeeccccc
Confidence 99999999999999999 9999999999999999887 333333 3889999999999 999999999999999999999
Q ss_pred CeEE-EecCCCCCeEEEEEc
Q 011126 461 CQVV-DYTDIREIVSAVCYC 479 (493)
Q Consensus 461 ~~~~-~~~~~~~~I~sv~~s 479 (493)
++.+ .+.+|.....+++..
T Consensus 290 ~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 290 GKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceeeecCCcccccEEEEee
Confidence 8876 588888887777653
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=210.13 Aligned_cols=235 Identities=19% Similarity=0.349 Sum_probs=203.1
Q ss_pred ccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (493)
|+..+.+.+|.+=+.++++.|.+.++++|+.|++|+|||+..+...+ ++.||...|..+++++--.||++++.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-------tltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-------TLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-------eecchhheeeeeeecccCceEEEecC
Confidence 44556688899999999999999999999999999999998766433 57899999999999999999999999
Q ss_pred CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
|+.|+.||+...+.++.+..+-..+.|+...+.- -..++++.|..+.+|+.+.- ..++.+
T Consensus 214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl----------------dvl~t~grDst~RvWDiRtr----~~V~~l 273 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL----------------DVLVTGGRDSTIRVWDIRTR----ASVHVL 273 (460)
T ss_pred CCeeEEEechhhhhHHHhccccceeEEEeccccc----------------eeEEecCCcceEEEeeeccc----ceEEEe
Confidence 9999999999999999888877766666543322 23467888999999998763 458899
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
.||..+|..+.+.|.+ .+++|+.|++|++||++.++...++. |...|.+++.+| ....||+++.|. |+-|++..+.
T Consensus 274 ~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~g~ 351 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPDN-IKQWKLPEGE 351 (460)
T ss_pred cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCcc-ceeccCCccc
Confidence 9999999999999977 99999999999999999998887775 889999999999 899999999885 9999999998
Q ss_pred EE-EecCCCCCeEEEEEccCCCEEEEee
Q 011126 463 VV-DYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 463 ~~-~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+ .+.+|...|++++.+.||- +++|+
T Consensus 352 f~~nlsgh~~iintl~~nsD~v-~~~G~ 378 (460)
T KOG0285|consen 352 FLQNLSGHNAIINTLSVNSDGV-LVSGG 378 (460)
T ss_pred hhhccccccceeeeeeeccCce-EEEcC
Confidence 77 5889999999999999984 44444
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=2.2e-24 Score=210.71 Aligned_cols=237 Identities=19% Similarity=0.308 Sum_probs=179.5
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
+...|..-+.++.|+|||.++|+.+.||+|.+||=+...+... ...-.+|++.|.+|.|+||++.|+|++.|.+++
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~----l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE----LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE----ecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 3445667788899999999999999999999999776543211 001248999999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCc---eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 310 VWKVIEHERLDGFDVQDTDPS---CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
|||+.+.+++.++........ .+.|. ...+ +.-+..+.+-.+++... .+++.+.|
T Consensus 261 IWdVs~~slv~t~~~~~~v~dqqvG~lWq---kd~l---------------ItVSl~G~in~ln~~d~----~~~~~i~G 318 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQ---KDHL---------------ITVSLSGTINYLNPSDP----SVLKVISG 318 (603)
T ss_pred EEEeeccceEEEeecCCchhceEEEEEEe---CCeE---------------EEEEcCcEEEEecccCC----Chhheecc
Confidence 999999999888876544111 11111 1111 22233334444433322 35778889
Q ss_pred CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE--------------------------------------------
Q 011126 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-------------------------------------------- 421 (493)
Q Consensus 387 h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~-------------------------------------------- 421 (493)
|...|++|+.+|++ +|++|+.||.|.-|+..++..
T Consensus 319 HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~ 398 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK 398 (603)
T ss_pred cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc
Confidence 99999999999998 999999999999998643311
Q ss_pred --------------------------------------------------------------------E-----------
Q 011126 422 --------------------------------------------------------------------L----------- 422 (493)
Q Consensus 422 --------------------------------------------------------------------~----------- 422 (493)
+
T Consensus 399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ 478 (603)
T KOG0318|consen 399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK 478 (603)
T ss_pred cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc
Confidence 1
Q ss_pred ---EEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 423 ---RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 423 ---~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~--~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
....|.++|++|+++| ++.|||+|...++|.+||+.++++. .|.-|...|++++|+|+.+.+|+|+-|-|
T Consensus 479 ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~ 553 (603)
T KOG0318|consen 479 EEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTN 553 (603)
T ss_pred ceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccce
Confidence 1112667889999999 9999999999999999999888775 47789999999999999999999987754
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1.3e-26 Score=219.89 Aligned_cols=226 Identities=22% Similarity=0.400 Sum_probs=186.5
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
.|..+.|.|+|+.|++|+..|.+.+|+...-. ..-.+++|..+|.+|.|+++|.+++||+.+|.|++|+..-.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceee-------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 34458999999999999999999999974222 22236899999999999999999999999999999997543
Q ss_pred eeeeeeeccC-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 317 ERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 317 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
. ++.+..+. ..+.+++|+++. ..+++.+.|+.+.+|+.... ++-..+.||.-.|.++.
T Consensus 171 n-Vk~~~ahh~eaIRdlafSpnD----------------skF~t~SdDg~ikiWdf~~~----kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 171 N-VKIIQAHHAEAIRDLAFSPND----------------SKFLTCSDDGTIKIWDFRMP----KEERVLRGHGWDVKSVD 229 (464)
T ss_pred h-hHHhhHhhhhhhheeccCCCC----------------ceeEEecCCCeEEEEeccCC----chhheeccCCCCcceec
Confidence 3 33344333 667788887744 23456678888888876542 34556799999999999
Q ss_pred EeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC-eEEEecCCCCC
Q 011126 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDIREI 472 (493)
Q Consensus 396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~-~~~~~~~~~~~ 472 (493)
|+|.. ++++++.|..|++||.+++.|+.++. |.+.|..+.|+| ++++|+++|.|..++++|+++. ++..+.+|+..
T Consensus 230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd 308 (464)
T KOG0284|consen 230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD 308 (464)
T ss_pred cCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhh
Confidence 99987 99999999999999999999999986 999999999999 9999999999999999999954 45578999999
Q ss_pred eEEEEEccCCCE-EEEeecC
Q 011126 473 VSAVCYCPDGKV-RQNSACN 491 (493)
Q Consensus 473 I~sv~~spdG~~-l~s~s~d 491 (493)
|+++.|+|-..- |++|+.|
T Consensus 309 v~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 309 VTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred heeeccccccccceeeccCC
Confidence 999999998764 4555555
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=209.74 Aligned_cols=245 Identities=20% Similarity=0.322 Sum_probs=208.3
Q ss_pred ccccccc---CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCE
Q 011126 222 RGWLKKL---GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298 (493)
Q Consensus 222 ~~w~~~~---~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~ 298 (493)
..|..+. ..+.++...+..+-|+|+-..+++++.|++|++||+.+... ...+++|++.|..|.|+..|++
T Consensus 92 ~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------e~~LrGHt~sv~di~~~a~Gk~ 164 (406)
T KOG0295|consen 92 ALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------ERSLRGHTDSVFDISFDASGKY 164 (406)
T ss_pred hhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------hhhhhccccceeEEEEecCccE
Confidence 3355542 23566777778899999999999999999999999986654 3358999999999999999999
Q ss_pred EEEEECCCcEEEEecCC-CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec
Q 011126 299 LASGGEDGTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (493)
Q Consensus 299 Lasgs~Dg~V~iWdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (493)
||+++.|-.+++||..+ .++++.+..+...+.++.+.+.+. ..+..+.|..+..|+....
T Consensus 165 l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd----------------~ilS~srD~tik~We~~tg--- 225 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD----------------HILSCSRDNTIKAWECDTG--- 225 (406)
T ss_pred EEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC----------------eeeecccccceeEEecccc---
Confidence 99999999999999977 566777778888888888877652 2345566777777766543
Q ss_pred ccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccC--------------CC
Q 011126 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV--------------DD 441 (493)
Q Consensus 378 ~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~--------------d~ 441 (493)
-.+.++.+|...|.-++.+.+| ++++++.|.+|++|-+.+++|...+. |..+|-|++|-|. .+
T Consensus 226 -~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 226 -YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred -eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCc
Confidence 3478899999999999999999 99999999999999999999998887 9999999999873 23
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 442 NYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 442 ~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.++.+++.|++|++||+.++.++ .+.+|.+.|..++|+|.|+||++.+.||+
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence 59999999999999999999877 68999999999999999999999998874
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=225.50 Aligned_cols=233 Identities=24% Similarity=0.441 Sum_probs=197.8
Q ss_pred ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec-
Q 011126 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV- 313 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl- 313 (493)
...+.++.|+|+|.++++++.++.+++|+...... ...+++.+|...|..++|+|++++|++++.|++|+|||+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 45666799999999999999999999999854332 133345889999999999999999999999999999999
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (493)
..+..++.+..|...+.++.|.+.+ . ..+.++.|..|.+|+.+. .+++..+.+|...|++
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~---------------~i~Sgs~D~tvriWd~~~----~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDG-N---------------LLVSGSDDGTVRIWDVRT----GECVRKLKGHSDGISG 293 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCC-C---------------EEEEecCCCcEEEEeccC----CeEEEeeeccCCceEE
Confidence 5568889999999888888887766 2 235678889999999887 5668899999999999
Q ss_pred EEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEec-CCC--cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 011126 394 LSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (493)
Q Consensus 394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~~-h~~--~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~ 466 (493)
++|++++ +|++++.|+.|+|||+.++. ++..+. +.. .+++++|+| ++.+|++++.|+.+++||+..+..+ .+
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee
Confidence 9999999 99999999999999999999 566664 333 699999999 9999999999999999999988766 46
Q ss_pred cCCCC---CeEEEEEccCCCEEEEeecCCC
Q 011126 467 TDIRE---IVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 467 ~~~~~---~I~sv~~spdG~~l~s~s~d~~ 493 (493)
..|.. .+.+..+++.|+++++|+.|.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~ 402 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGS 402 (456)
T ss_pred cccCCcceeEecccccCCCCeEEEEeCCce
Confidence 66665 4556677899999999988753
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=3.4e-25 Score=224.00 Aligned_cols=238 Identities=20% Similarity=0.296 Sum_probs=198.2
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCcEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVR 309 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~V~ 309 (493)
+.+|.+.+.++....+|.+|++|++|.+|++|.+.+... ...+.+...+|++.|.+++++..+ .+|++++.|++++
T Consensus 361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~---~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS---KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc---hhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 456677777777667789999999999999999854432 223444568999999999998754 4899999999999
Q ss_pred EEecCCCeee---------eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126 310 VWKVIEHERL---------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 310 iWdl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (493)
+|++...+.. .....|...+.++.++++. ....+++.|.++.+|..... ..
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd----------------kLiAT~SqDktaKiW~le~~----~l 497 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND----------------KLIATGSQDKTAKIWDLEQL----RL 497 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecCCC----------------ceEEecccccceeeecccCc----eE
Confidence 9999762211 1223455566666665554 23467888899999988743 34
Q ss_pred eEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
...+.||...|.++.|+|.. .++|+|.|+||+||.+.+..|+++|. |...|..+.|-. ++..|++++.||.|+||++
T Consensus 498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNI 576 (775)
T ss_pred EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEec
Confidence 78899999999999999988 99999999999999999999999998 999999999999 9999999999999999999
Q ss_pred CCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 459 RRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 459 ~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+++.++ .+..|.+.|++++-+|.+..+++|+.|.
T Consensus 577 kt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 577 KTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG 611 (775)
T ss_pred cchhhhhhhhhccceeEEEeecCccceeEecCCCe
Confidence 999988 5889999999999999999999999875
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.8e-24 Score=224.41 Aligned_cols=238 Identities=24% Similarity=0.377 Sum_probs=200.3
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (493)
...+.+|...+..++|+|++.++++++.|++|+||++.... ...+++.+|...|++++|+|+|++|++|+.|++
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC------eEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence 33447788889999999999999999999999999994332 234578899999999999999999999999999
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
|+|||+.+++++..+..+...+..+.+..+.. ....++.++.+.+|+....... ++..+.++
T Consensus 270 vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~----------------~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~ 331 (456)
T KOG0266|consen 270 VRIWDVRTGECVRKLKGHSDGISGLAFSPDGN----------------LLVSASYDGTIRVWDLETGSKL--CLKLLSGA 331 (456)
T ss_pred EEEEeccCCeEEEeeeccCCceEEEEECCCCC----------------EEEEcCCCccEEEEECCCCcee--eeecccCC
Confidence 99999999999999999999888887766552 2234567889999988776643 34556666
Q ss_pred CCC--EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCC---cEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 388 SSE--VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 388 ~~~--V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~---~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
... ++.+.|+|++ ++++++.|+++++||+..+.++..+. |.. .+.+...++ .+.++++|+.|+.|++||+.+
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-CCCeEEEEeCCceEEEEeCCc
Confidence 555 9999999999 99999999999999999999988886 554 344555567 899999999999999999998
Q ss_pred CeEE-EecCC-CCCeEEEEEccCCCEEEEeec
Q 011126 461 CQVV-DYTDI-REIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 461 ~~~~-~~~~~-~~~I~sv~~spdG~~l~s~s~ 490 (493)
+..+ .+.+| ...+..+.|+|...++++++.
T Consensus 411 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 411 GGILQRLEGHSKAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred cchhhhhcCCCCCceeccccCCCcCeeeecCc
Confidence 7666 57788 889999999999999999873
No 29
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=1.5e-25 Score=216.98 Aligned_cols=238 Identities=21% Similarity=0.336 Sum_probs=197.0
Q ss_pred ccCceeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126 227 KLGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D 305 (493)
.+....+|...+.++.|-| .+.+|++++.|+.|+||++-... .+.++|.+|..+|.+++|+++|..++|++.|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------RCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc------ceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 3456788999999999999 89999999999999999987533 2445789999999999999999999999999
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
+.|++||+++|+++..+.... .+.|+.+.+.+.+ .++.+..++.++.|+.+...+ ++.+.
T Consensus 280 ~~lKlwDtETG~~~~~f~~~~-~~~cvkf~pd~~n---------------~fl~G~sd~ki~~wDiRs~kv----vqeYd 339 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLDK-VPTCVKFHPDNQN---------------IFLVGGSDKKIRQWDIRSGKV----VQEYD 339 (503)
T ss_pred eeeeeeccccceEEEEEecCC-CceeeecCCCCCc---------------EEEEecCCCcEEEEeccchHH----HHHHH
Confidence 999999999999998887653 4567776666532 335677888899999887554 66777
Q ss_pred cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--------------------------------EEe-------
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--------------------------------RVF------- 425 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--------------------------------~~~------- 425 (493)
.|.+.|..|.|-++| ++++.+.|++++||+.+..-.+ ..|
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 899999999999999 9999999999999997643221 111
Q ss_pred -------c---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCC-EEEEeecC
Q 011126 426 -------S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGK-VRQNSACN 491 (493)
Q Consensus 426 -------~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~-~l~s~s~d 491 (493)
. ..++-..+.|+| ||++|++|..||++.+||.++.+++ .+..|..+++.+.|+|.-. .+|+++-+
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~ 496 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWD 496 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccC
Confidence 0 235667899999 9999999999999999999999888 5888999999999999864 56666654
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=4.7e-24 Score=200.26 Aligned_cols=239 Identities=21% Similarity=0.256 Sum_probs=194.7
Q ss_pred ccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (493)
...+..+..|.+.+-+++.+|+.+++|+|+.|..-.||+...... .-++.+|+..|+++.|+.+|.+||||+.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-------~~eltgHKDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-------AGELTGHKDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-------eeEecCCCCceEEEEEccCceEEEecCC
Confidence 344456677888888999999999999999999999999886652 2257899999999999999999999999
Q ss_pred CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
+|.|+||+..++.....+......+.-+.|.+. ....+.++.++.+.+|..... ...+.+
T Consensus 127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~----------------a~illAG~~DGsvWmw~ip~~----~~~kv~ 186 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR----------------AHILLAGSTDGSVWMWQIPSQ----ALCKVM 186 (399)
T ss_pred CccEEEEEcccCceEEEeecccCceEEEEeccc----------------ccEEEeecCCCcEEEEECCCc----ceeeEe
Confidence 999999999999887777644333333333331 123456778888888866542 346778
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEE---------------------------------------
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV--------------------------------------- 424 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~--------------------------------------- 424 (493)
.||..++++=.|.|+| .++++..|++|++|+..+++++..
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence 9999999999999999 999999999999999877644221
Q ss_pred ---------------------------------------------------------ecCCCcEEEEEEccCCCCEEEEE
Q 011126 425 ---------------------------------------------------------FSHNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 425 ---------------------------------------------------------~~h~~~V~~v~fsp~d~~~l~sg 447 (493)
+.|...|+.+.|-+ ..+|+++
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~ 344 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTA 344 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheee
Confidence 12556778888876 5789999
Q ss_pred eCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 448 SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 448 s~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+.+|+|++||.++|+++ .+.+|...|..++++|+++++++++.|.
T Consensus 345 c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 345 CANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred ccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 99999999999999988 6999999999999999999999998774
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=7.3e-24 Score=214.62 Aligned_cols=229 Identities=25% Similarity=0.383 Sum_probs=191.8
Q ss_pred cccccceeccCCCeEEeeec-CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126 236 DRHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~ 314 (493)
..+..++|+..|.+||.|+. -|.+.||+++...-.+ ..++|...|++++++|||+++|+|+.||.|+|||..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl-------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL-------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceee-------eccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 45566889999999999765 5899999998654333 247999999999999999999999999999999999
Q ss_pred CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC-CCCEeE
Q 011126 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLD 393 (493)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~ 393 (493)
.+-+..++..|...+..+.|...+. ..+..+-|+++..|+.+.++. .++|... .-...|
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~----------------~llssSLDGtVRAwDlkRYrN----fRTft~P~p~Qfsc 440 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGN----------------VLLSSSLDGTVRAWDLKRYRN----FRTFTSPEPIQFSC 440 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCC----------------EEEEeecCCeEEeeeecccce----eeeecCCCceeeeE
Confidence 9999999999999888888876653 235667888999998876543 3444442 335678
Q ss_pred EEEeCCC-eEEEEeCCCe-EEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC-eEEEecCC
Q 011126 394 LSWSKNG-FLLSSSADKT-VRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDI 469 (493)
Q Consensus 394 l~~sp~g-~l~sgs~Dg~-V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~-~~~~~~~~ 469 (493)
++..|.| ++.+|+.|.. |.||++++|+.+-.+. |.++|.+++|+| ++..|++|+.|.+||+||+-.. ..+....+
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i 519 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEI 519 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEee
Confidence 9999999 7777777764 9999999999999997 999999999999 9999999999999999999755 34455667
Q ss_pred CCCeEEEEEccCCCEEEEeecCC
Q 011126 470 REIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 470 ~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
...+++++|+|||+-|+++.-|+
T Consensus 520 ~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred ccceeEEEEcCCCCeEEEEEecc
Confidence 78899999999999999988763
No 32
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=4e-24 Score=192.58 Aligned_cols=256 Identities=17% Similarity=0.234 Sum_probs=195.4
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV 308 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V 308 (493)
...+|...+.+++|+.+|..|++|+.|++++||++..... .......+|.+.|-.++|+| ...+|++++.|.+|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI 89 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence 3445666777899999999999999999999999986522 22335688999999999998 56689999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCC--------CceeeeeccCcccccee-------eeecCCCceEEEcCCCc
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHL--------SQLIPIDVDKEKIDKTK-------SLRKSSDLTCVVLPPKV 373 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~~ 373 (493)
++||+..+++...+......+ .+.+.+.+. ..+..++....++.... -+.-..+..+.+.....
T Consensus 90 r~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred EEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 999999999988876654433 233333322 22222222211111000 00001111122211111
Q ss_pred e--ee----cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEE
Q 011126 374 F--RL----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 374 ~--~~----~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~ 445 (493)
. .+ .-+|+..+..|.....||.|+|+| +||+|+.|..+.|||+..--|++.|. +.-+|..+.|+. +|++||
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lA 247 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLA 247 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceee
Confidence 0 00 247899999999999999999999 99999999999999999999999997 889999999999 999999
Q ss_pred EEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 446 sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+|+.|..|-|=++.+|..+....+.++...|+|+|...+|+-++.|+
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence 99999999999999999999899999999999999999999888775
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=2.8e-23 Score=199.24 Aligned_cols=234 Identities=25% Similarity=0.449 Sum_probs=189.6
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+|.+.+.+++|+|++++|++++.+|.|++|++.... ....+..|...|..+.|+|++++|++++.||.|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 455777888899999999999999999999999987543 2235678999999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+|++.+++.+..+..+...+.++.+.+. ..+ .+....++.+.+|+... .++...+..|..
T Consensus 77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~--------------~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~ 136 (289)
T cd00200 77 LWDLETGECVRTLTGHTSYVSSVAFSPD--GRI--------------LSSSSRDKTIKVWDVET----GKCLTTLRGHTD 136 (289)
T ss_pred EEEcCcccceEEEeccCCcEEEEEEcCC--CCE--------------EEEecCCCeEEEEECCC----cEEEEEeccCCC
Confidence 9999987777777665555555555443 111 22233466677776653 234566778999
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-e
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y 466 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~ 466 (493)
.|.+++|+|++ ++++++.|+.|++||++.++.+..+. |...|+++.|+| +++.|++++.||.|++||+++++.+. +
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecch
Confidence 99999999988 77777779999999999888888776 777999999999 88899999999999999999888775 4
Q ss_pred cCCCCCeEEEEEccCCCEEEEeecC
Q 011126 467 TDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 467 ~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
..+...|.+++|+|++.++++++.+
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCC
Confidence 4788899999999998888887634
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=3.9e-23 Score=198.25 Aligned_cols=232 Identities=26% Similarity=0.441 Sum_probs=188.3
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
.+...+..+.|.|+++++++++.+|.|++|++.... ....+..|...|.++.|+|+++++++++.|+.|++||
T Consensus 49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121 (289)
T ss_pred cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 344445568999999999999999999999988542 2335678999999999999998999988899999999
Q ss_pred cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
+.+++....+..+...+.++.+.+. ..+ .+.+..++.+.+|+... .+++..+..|...|.
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~--------------l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~i~ 181 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPD--GTF--------------VASSSQDGTIKLWDLRT----GKCVATLTGHTGEVN 181 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCc--CCE--------------EEEEcCCCcEEEEEccc----cccceeEecCccccc
Confidence 9988887777755555555555443 111 12223356677776653 244666778999999
Q ss_pred EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCC
Q 011126 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI 469 (493)
Q Consensus 393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~ 469 (493)
+++|+|++ .+++++.|+.|++||+..++.+..+ .|...+.++.|+| ++.++++++.||.|++||+.+++.+ .+..|
T Consensus 182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence 99999999 8999999999999999999999888 5888999999999 7889999888999999999987766 46678
Q ss_pred CCCeEEEEEccCCCEEEEeecCC
Q 011126 470 REIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 470 ~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
...|.+++|+|++++|++++.|+
T Consensus 261 ~~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 261 TNSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred CCcEEEEEECCCCCEEEEecCCC
Confidence 88999999999999999998775
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.1e-24 Score=212.35 Aligned_cols=236 Identities=19% Similarity=0.273 Sum_probs=205.0
Q ss_pred eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
..+.+++.++.|||...+++++-..|.|.||++++.. +.+.+.-..-+|++.+|-+..+.+++|+.|..||||
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 3366889999999999999999999999999998654 334566678899999999999999999999999999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
+..+++.+..+..|..-+.++...|... ..++.+.|..+.+|+-.. .-.+.++|.||...|
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P----------------~vLtsSDDm~iKlW~we~---~wa~~qtfeGH~HyV 143 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLP----------------YVLTSSDDMTIKLWDWEN---EWACEQTFEGHEHYV 143 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCC----------------eEEecCCccEEEEeeccC---ceeeeeEEcCcceEE
Confidence 9999999999999999888887766542 235667777787776432 224478899999999
Q ss_pred eEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccC-CCCEEEEEeCCCeEEEEeCCCCeEEE-e
Q 011126 392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVVD-Y 466 (493)
Q Consensus 392 ~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~IWdl~~~~~~~-~ 466 (493)
.+++|+|.. .+++++.|+||+||.+.+..+..++. |...|+||.+-|. |..||++|+.|.+|+|||.++.++++ +
T Consensus 144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 144 MQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL 223 (794)
T ss_pred EEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence 999999976 99999999999999999999998886 9999999999882 23499999999999999999999884 7
Q ss_pred cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 467 TDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 467 ~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.+|...|+.++|+|.=.++++|+-|++
T Consensus 224 eGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 224 EGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred hcccccceEEEecCCCcEEEEecCCcc
Confidence 889999999999999999999998764
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=1.1e-22 Score=225.87 Aligned_cols=258 Identities=16% Similarity=0.227 Sum_probs=190.9
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccccc-ccceeeecccCCEEEEEEcc-CCCEEEEEECCCc
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSL-YTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT 307 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~ 307 (493)
.+..|.+.+.+++|+|+|++||+|+.|+.|+||+........... .....+. +...|.+++|+| ++.+|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 345577778889999999999999999999999976421111110 1111233 456899999988 5789999999999
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceee---------eeccCccc------------------cceeeeec
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP---------IDVDKEKI------------------DKTKSLRK 360 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~------------------~~~~~~~~ 360 (493)
|+|||+.+++.+..+..+...+.++.|.+.....++. ++...... .....+.+
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 9999999999888888888777777776533222222 22221110 01123445
Q ss_pred CCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCC------cEEEEec-CCCcEEE
Q 011126 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID------RCLRVFS-HNNYVTS 433 (493)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~------~~~~~~~-h~~~V~~ 433 (493)
+.++.+.+|+.+... .++..+.+|...|.++.|.+..+|++++.|++|+|||+... .++..+. |...+++
T Consensus 637 s~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 637 SADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred eCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 667777777765321 24667789999999999985459999999999999999743 4566665 8999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--------------ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------------YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--------------~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++|+| ++.+|++|+.|++|+||+......+. ...+...|.+++|+|+|..|++++.++
T Consensus 714 v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 714 VGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred EEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 99999 89999999999999999987653321 123455799999999999999998875
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.7e-24 Score=210.82 Aligned_cols=226 Identities=21% Similarity=0.300 Sum_probs=192.7
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC-C
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-H 316 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~-~ 316 (493)
+.+..|-+-.+++++|+.|..|+||++.+.. ..+.|.+|.+-|++|+.+|...+++|++.|-+|++||... .
T Consensus 58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~e-------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w 130 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW 130 (794)
T ss_pred hhhheeeeccceEEEecCCceEEEEecccce-------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce
Confidence 3446677777899999999999999988544 4567999999999999999999999999999999999965 4
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
.+.+++..|..-+.++.+.|...+.+ .+.+-|.++.+|.... ..|..++.||...|+|+.+
T Consensus 131 a~~qtfeGH~HyVMqv~fnPkD~ntF---------------aS~sLDrTVKVWslgs----~~~nfTl~gHekGVN~Vdy 191 (794)
T KOG0276|consen 131 ACEQTFEGHEHYVMQVAFNPKDPNTF---------------ASASLDRTVKVWSLGS----PHPNFTLEGHEKGVNCVDY 191 (794)
T ss_pred eeeeEEcCcceEEEEEEecCCCccce---------------eeeeccccEEEEEcCC----CCCceeeeccccCcceEEe
Confidence 67778888887777777777665544 3556677888887654 3467889999999999999
Q ss_pred eCCC---eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCC
Q 011126 397 SKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIRE 471 (493)
Q Consensus 397 sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~ 471 (493)
-+.| +|+||+.|.+|+|||.++..|++++. |...|.++.|+| .-.++++|+.||+||||+..+-++.. +.-..+
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle 270 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE 270 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcCCc
Confidence 9887 99999999999999999999999997 999999999999 88999999999999999999888774 555567
Q ss_pred CeEEEEEccCCCEEEEeec
Q 011126 472 IVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 472 ~I~sv~~spdG~~l~s~s~ 490 (493)
.|++|+-.+.+..+++|..
T Consensus 271 RvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 271 RVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred eEEEEeecCCCCeEEEecc
Confidence 8999998888888777653
No 38
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=3.4e-24 Score=197.93 Aligned_cols=236 Identities=26% Similarity=0.395 Sum_probs=189.8
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccc-cceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLY-TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~-~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~ 314 (493)
..+.|..|+|||++|++|+.||-|.||++.+++....--+ ....|.-|..+|.||.|+.|...||+|+.||.|+||.+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 4456789999999999999999999999976553222111 223456689999999999999999999999999999999
Q ss_pred CCeeeeeee-ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126 315 EHERLDGFD-VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (493)
Q Consensus 315 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (493)
+|.+++.+. .+...+.|+.|+.++... +.++.+..+.+.-.+. .+.+..+.||+..|+.
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~Sqi----------------LS~sfD~tvRiHGlKS----GK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQI----------------LSASFDQTVRIHGLKS----GKCLKEFRGHSSYVNE 353 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcchh----------------hcccccceEEEecccc----chhHHHhcCccccccc
Confidence 999999987 677778888876655322 2333344444333332 4568889999999999
Q ss_pred EEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec-
Q 011126 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT- 467 (493)
Q Consensus 394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~- 467 (493)
..|.++| ++++++.||+|++|+.++..|+.+|+ ...+|+++..-|.+...++.+...++|+|.++. |+++. +.
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsS 432 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSS 432 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeecc
Confidence 9999999 99999999999999999999999997 556899999999889999999999999999996 45553 32
Q ss_pred --CCCCCeEEEEEccCCCEEEEeecCC
Q 011126 468 --DIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 468 --~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
...+...+.+.+|-|.++.+.+-|+
T Consensus 433 GkREgGdFi~~~lSpkGewiYcigED~ 459 (508)
T KOG0275|consen 433 GKREGGDFINAILSPKGEWIYCIGEDG 459 (508)
T ss_pred CCccCCceEEEEecCCCcEEEEEccCc
Confidence 2334567788999999999988776
No 39
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=6.2e-23 Score=212.74 Aligned_cols=198 Identities=14% Similarity=0.198 Sum_probs=157.0
Q ss_pred ceeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCc
Q 011126 230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGT 307 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~ 307 (493)
.+.+|.+.+.+++|+| ++.+|++|+.|++|+||++...............+.+|...|.+++|+|++ ++|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 3567888899999999 889999999999999999975432111122345688999999999999975 69999999999
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
|+|||+.+++. +..+.+|
T Consensus 150 VrIWDl~tg~~--------------------------------------------------------------~~~l~~h 167 (493)
T PTZ00421 150 VNVWDVERGKA--------------------------------------------------------------VEVIKCH 167 (493)
T ss_pred EEEEECCCCeE--------------------------------------------------------------EEEEcCC
Confidence 99999976542 2335678
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCc-EEEEEEccCCCCEEEEEe----CCCeEEEEeCCC
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY-VTSVAFNPVDDNYFISGS----IDGKVRIWEVRR 460 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~-V~~v~fsp~d~~~l~sgs----~Dg~V~IWdl~~ 460 (493)
...|.+++|+|+| +|++++.|++|+|||+++++.+..+. |... +..+.|.| ++.+|++++ .|+.|++||+++
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCC
Confidence 8999999999999 99999999999999999999888775 6554 45788999 767776654 479999999986
Q ss_pred Ce-EEEe--cCCCCCeEEEEEccCCCEEEEeec
Q 011126 461 CQ-VVDY--TDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 461 ~~-~~~~--~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.. .+.. ......+....|+|++++|++++.
T Consensus 247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred CCCceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 53 3332 233445667789999999988874
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=1.1e-23 Score=197.10 Aligned_cols=194 Identities=22% Similarity=0.373 Sum_probs=168.7
Q ss_pred eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceee
Q 011126 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (493)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (493)
..+.+|.+.|.|+++.|..+++++|+.|++|+|||+.+++...++..+...+..+.++..+. ..
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp----------------Yl 208 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP----------------YL 208 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc----------------eE
Confidence 35789999999999999999999999999999999999999999988877777776655442 23
Q ss_pred eecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEE
Q 011126 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVA 435 (493)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~ 435 (493)
+....+..+..|+... .+.++.+.||-..|.||+.+|.- .|+||+.|.++||||+++...+.++. |..+|..+.
T Consensus 209 Fs~gedk~VKCwDLe~----nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEY----NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred EEecCCCeeEEEechh----hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 4556667777777653 34578889999999999999987 99999999999999999999999997 999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+.| .+..+++|+.|++|++||++.++.+ ....|+..|.+++.+|.-..+++++.|.
T Consensus 285 ~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn 341 (460)
T KOG0285|consen 285 CQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN 341 (460)
T ss_pred eec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc
Confidence 999 5566899999999999999988765 6889999999999999999999988763
No 41
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.9e-23 Score=197.47 Aligned_cols=259 Identities=18% Similarity=0.257 Sum_probs=186.4
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+..|.+.+.-+.|+++|++||+++.|.+..+|.+..... +...+++.+|..+|..|.||||.+||++|+.|..++
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 3556777788899999999999999999999999865442 445668899999999999999999999999999999
Q ss_pred EEecCCCeeeeeeecc-CCCCceEEEeeCCCCce--------eeeeccCccccc--------eeeeecCCCceEEEc--C
Q 011126 310 VWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQL--------IPIDVDKEKIDK--------TKSLRKSSDLTCVVL--P 370 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--------~~~~~~s~~~~~~~~--~ 370 (493)
+||+.++.....+... ...+.++.|.+++...+ +.++.+.+.... ...+.-+.|+.-++. .
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9999999988777655 55667777777665422 222222222111 111222222221111 1
Q ss_pred CCceeec---ccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-C--CCcEEEEEEccCCCCE
Q 011126 371 PKVFRLL---EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-H--NNYVTSVAFNPVDDNY 443 (493)
Q Consensus 371 ~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h--~~~V~~v~fsp~d~~~ 443 (493)
.+...+. ...-..+.....+|++++.|.++ ++++.-.+..|++||+.....+..+. | ..++..-+|--.+..+
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 1111111 11111233456788999999999 77777788999999998766665553 3 4567777887767789
Q ss_pred EEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCE-EEEeecCC
Q 011126 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKV-RQNSACNF 492 (493)
Q Consensus 444 l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~-l~s~s~d~ 492 (493)
+++|+.|++|+||+..+++++ .+.+|...|++|+|+|.... +|+++.|+
T Consensus 455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC
Confidence 999999999999999999988 58999999999999998765 55555554
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=1.2e-24 Score=202.55 Aligned_cols=217 Identities=22% Similarity=0.364 Sum_probs=179.4
Q ss_pred eeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeee
Q 011126 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG 321 (493)
Q Consensus 242 ~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~ 321 (493)
++--|+..+++|..|.+|+|||.. .+.+...+.||++.|.|+.|. .+.|++|+.|.+|+|||+++++++.+
T Consensus 202 ClQYDD~kiVSGlrDnTikiWD~n-------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 202 CLQYDDEKIVSGLRDNTIKIWDKN-------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred EEEecchhhhcccccCceEEeccc-------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence 345567789999999999999976 444556789999999999995 56999999999999999999999988
Q ss_pred eeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCe
Q 011126 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~ 401 (493)
+-.+...+..+.|+. ...++.+.+..+.+|+..... .....+.+.||...|+.+.|+.. +
T Consensus 273 lihHceaVLhlrf~n------------------g~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd~k-y 332 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSN------------------GYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFDDK-Y 332 (499)
T ss_pred HhhhcceeEEEEEeC------------------CEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccccc-e
Confidence 877766554444422 223456677788888765443 23445667899999999999765 9
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEc
Q 011126 402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC 479 (493)
Q Consensus 402 l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~s 479 (493)
+++++.|.+|++|++.++++++++. |...|.|+++ .++++++|+.|.+|++||+..|.++. +.+|.+-|.++.|
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF- 408 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF- 408 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee-
Confidence 9999999999999999999999996 9999999998 67999999999999999999999885 7889999999888
Q ss_pred cCCCEEEEeecCC
Q 011126 480 PDGKVRQNSACNF 492 (493)
Q Consensus 480 pdG~~l~s~s~d~ 492 (493)
|.+.+++|+-|+
T Consensus 409 -d~krIVSGaYDG 420 (499)
T KOG0281|consen 409 -DNKRIVSGAYDG 420 (499)
T ss_pred -cCceeeeccccc
Confidence 567788887664
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6e-23 Score=210.85 Aligned_cols=246 Identities=19% Similarity=0.289 Sum_probs=199.5
Q ss_pred hccccccccCc----eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC
Q 011126 220 VKRGWLKKLGA----MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295 (493)
Q Consensus 220 ~k~~w~~~~~~----~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd 295 (493)
+...|.-+.+. ...|.+.+..+.|||.+.++++|+.|..|+||+++..... -++.||-+-|..+.|++.
T Consensus 32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-------ftL~GHlDYVRt~~FHhe 104 (1202)
T KOG0292|consen 32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-------FTLLGHLDYVRTVFFHHE 104 (1202)
T ss_pred eeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh-------hhhccccceeEEeeccCC
Confidence 33445544333 5567788888999999999999999999999999866533 357899999999999999
Q ss_pred CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (493)
Q Consensus 296 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (493)
-.+|+|++.|-+||||+..+.+++..+..|..-+.|..|.+... ...+++-|.++.+|+....+
T Consensus 105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED----------------lIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED----------------LIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc----------------eEEEecccceEEEEeecchh
Confidence 99999999999999999999999999998887777777765442 22355666677777664332
Q ss_pred ecc-------------------------cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEE--E-ec
Q 011126 376 LLE-------------------------KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--V-FS 426 (493)
Q Consensus 376 ~~~-------------------------~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~--~-~~ 426 (493)
... -..+.+.||...|+-++|+|.- ++++|+.|..|++|.+...+.-. + ..
T Consensus 169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg 248 (1202)
T KOG0292|consen 169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG 248 (1202)
T ss_pred ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc
Confidence 211 1134678999999999999998 99999999999999987544322 2 24
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEee
Q 011126 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
|.+.|.++-|+| ..+++++.|.|++|+|||+...+.+. +....+..+.++-+|..+.+++|-
T Consensus 249 H~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 249 HYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH 311 (1202)
T ss_pred ccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec
Confidence 999999999999 99999999999999999999888774 666778899999999999887764
No 44
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-22 Score=179.88 Aligned_cols=241 Identities=15% Similarity=0.186 Sum_probs=191.1
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+|...+..+.++.+|.+|.+++.|.++.||-..++. ..-++.||++.|+++..+.+.++|++|+.|.+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-------eeeeecCCCceEEEEEecCCcceeeeccccceeE
Confidence 356677788889999999999999999999999764333 2336899999999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc---eeecccceEEEec
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV---FRLLEKPLHEFQG 386 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~ 386 (493)
+||+.+|+++..++.+. ++..+.|...+...++..+-..+ ....+.+++.+. -...+.|+..+..
T Consensus 78 LWDv~tGk~la~~k~~~-~Vk~~~F~~~gn~~l~~tD~~mg-----------~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNS-PVKRVDFSFGGNLILASTDKQMG-----------YTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred EEEcCCCcEEEEeecCC-eeEEEeeccCCcEEEEEehhhcC-----------cceEEEEEEccCChhhhcccCceEEecC
Confidence 99999999999888753 34445555544333333221111 111222222221 1123467888888
Q ss_pred CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-c-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 387 h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
+...++.+-|.|-+ .|++|..||.|.+||++++..+..- . |...|+.++++| +..+|++++.|.+-++||..+-++
T Consensus 146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceee
Confidence 99999999999999 9999999999999999998655443 3 999999999999 999999999999999999999999
Q ss_pred EEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 464 VDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 464 ~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
++......+|++.+++|--..++.|+.
T Consensus 225 ~Kty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 225 LKTYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred EEEeeecccccceecccccceEEecCC
Confidence 988888899999999998877776653
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7.5e-23 Score=210.13 Aligned_cols=229 Identities=20% Similarity=0.298 Sum_probs=193.5
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
.++..++|||...+++++-..|.|++||++-.. ....|..|.++|..+.|+|++.+++|||.|-.|+||+..+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhh-------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 456669999999999999999999999998433 3346789999999999999999999999999999999999
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
.+++.++..|-.-+..+.|.. ...++++.+.|.++.+|+... .+.+..+.||...|.|..
T Consensus 83 rrclftL~GHlDYVRt~~FHh----------------eyPWIlSASDDQTIrIWNwqs----r~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHH----------------EYPWILSASDDQTIRIWNWQS----RKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ceehhhhccccceeEEeeccC----------------CCceEEEccCCCeEEEEeccC----CceEEEEecCceEEEeec
Confidence 999999888877666665533 234567788899999987654 467899999999999999
Q ss_pred EeCCC-eEEEEeCCCeEEEEECCCCc---------------------------E-E-EEe-cCCCcEEEEEEccCCCCEE
Q 011126 396 WSKNG-FLLSSSADKTVRLWQVGIDR---------------------------C-L-RVF-SHNNYVTSVAFNPVDDNYF 444 (493)
Q Consensus 396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~---------------------------~-~-~~~-~h~~~V~~v~fsp~d~~~l 444 (493)
|+|.. .++++|.|.+|||||+..-+ + + +.+ +|...|+.++|+| .-.+|
T Consensus 143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-Tlpli 221 (1202)
T KOG0292|consen 143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLI 221 (1202)
T ss_pred cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceE
Confidence 99977 99999999999999985210 0 1 112 2888999999999 88999
Q ss_pred EEEeCCCeEEEEeCCCCeEE---EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 445 ISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 445 ~sgs~Dg~V~IWdl~~~~~~---~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++|+.|..|++|.+...+.- ...+|.+.|+++-|+|.-..+++.+-|+
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk 272 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK 272 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCc
Confidence 99999999999999865543 4789999999999999999999998876
No 46
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.1e-22 Score=187.11 Aligned_cols=217 Identities=17% Similarity=0.339 Sum_probs=164.3
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCc------cc-----cccccccceeeecccCCEEEEEEccCCCE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQ------SR-----ELSSLYTGQEFLAHEGSILTMKFSLDGQY 298 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~------~~-----~~~~~~~~~~l~~H~~~I~~l~fspdg~~ 298 (493)
-++.|...+.+.+|+|||.++|+|+.|..|+|.|++.. .. .-..-....++..|.+.|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 35667777778999999999999999999999998721 11 01112344678899999999999999999
Q ss_pred EEEEECCCcEEEEecCCCeeeeeeeccC--CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126 299 LASGGEDGTVRVWKVIEHERLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (493)
Q Consensus 299 Lasgs~Dg~V~iWdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (493)
|++|+.|++|+++|+......+.++... .++.++.|.+.+ .++ +.+.....+.+++...++.
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efl--------------lvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFL--------------LVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceE--------------EEecCCCceeEEeccceeE
Confidence 9999999999999997665544444332 234444444443 222 2333444555555554433
Q ss_pred cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--C-CCcEEEEEEccCCCCEEEEEeCCCe
Q 011126 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--H-NNYVTSVAFNPVDDNYFISGSIDGK 452 (493)
Q Consensus 377 ~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h-~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (493)
.-... .-.+|++.|+++.+++.+ +.+|++.||.|+|||--+++|+.+|. | ...|.+..|.. +++|+++.+.|..
T Consensus 251 fvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 251 FVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDST 328 (430)
T ss_pred eeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcce
Confidence 21111 235699999999999999 99999999999999999999999997 5 46899999999 9999999999999
Q ss_pred EEEEeCCCCeEE
Q 011126 453 VRIWEVRRCQVV 464 (493)
Q Consensus 453 V~IWdl~~~~~~ 464 (493)
|++|.+.+++.+
T Consensus 329 vkLWEi~t~R~l 340 (430)
T KOG0640|consen 329 VKLWEISTGRML 340 (430)
T ss_pred eeeeeecCCceE
Confidence 999999877543
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.90 E-value=7.4e-22 Score=193.09 Aligned_cols=237 Identities=18% Similarity=0.277 Sum_probs=187.8
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC--CcE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTV 308 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D--g~V 308 (493)
.+.|...+.-+.++|.|.|+|+|...|.|+||+.......+ ..+++.-.++|..|+|+.++++|+..++- ...
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiL-----Knef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHIL-----KNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceee-----eeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 34454555558899999999999999999999987544333 23677788999999999999999887653 334
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
+++-..++..+..+..+...+..+.+.+ ...++..+++.|..+.++.-..|+. ..++..|.
T Consensus 130 ~~F~~DSG~SvGei~GhSr~ins~~~Kp---------------sRPfRi~T~sdDn~v~ffeGPPFKF----k~s~r~Hs 190 (603)
T KOG0318|consen 130 HVFLWDSGNSVGEITGHSRRINSVDFKP---------------SRPFRIATGSDDNTVAFFEGPPFKF----KSSFREHS 190 (603)
T ss_pred EEEEecCCCccceeeccceeEeeeeccC---------------CCceEEEeccCCCeEEEeeCCCeee----eecccccc
Confidence 4444446776777776665554444433 2345566788888888886655544 45567799
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
.-|.|+.|+|+| ++++.+.||+|.|||-.+++.+..+. |.+.|.+++|+| |+..|+|++.|.+++|||+.+.++
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccce
Confidence 999999999999 99999999999999999999999996 999999999999 999999999999999999976543
Q ss_pred E--------------------------------------------EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 464 V--------------------------------------------DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 464 ~--------------------------------------------~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+ ...+|...|+++..+|||++|++++.|+
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 2 1235778899999999999999999875
No 48
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.2e-21 Score=171.47 Aligned_cols=239 Identities=20% Similarity=0.333 Sum_probs=178.3
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccc--------cccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSREL--------SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~--------~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (493)
..+.+++|+|.|.+.|+|+...+.+|..+....... .+....+.-+.|.+.|+|.+|+|+|++|++|+.|++
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 456679999999999999999999998765422210 011112334679999999999999999999999999
Q ss_pred EEEEecCCCeee-----eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126 308 VRVWKVIEHERL-----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 308 V~iWdl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
|++..++...+. ..+..+...+..+.|..+.... .......+..+-.+++.+-. ..++++
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~-----------~~il~s~gagdc~iy~tdc~----~g~~~~ 177 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG-----------GAILASAGAGDCKIYITDCG----RGQGFH 177 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcC-----------ceEEEecCCCcceEEEeecC----CCCcce
Confidence 999877544321 2344444444444444333221 11112223333333333322 246688
Q ss_pred EEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---C-----CCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---H-----NNYVTSVAFNPVDDNYFISGSIDGKV 453 (493)
Q Consensus 383 ~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h-----~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (493)
.+.||++.|..+ ++-+| ++++|+.|++||+||++...++.++. | ...|.+++..| .|++|++|-.|..-
T Consensus 178 a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc 255 (350)
T KOG0641|consen 178 ALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSC 255 (350)
T ss_pred eecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCce
Confidence 899999999987 33456 99999999999999999999999885 2 36799999999 99999999999999
Q ss_pred EEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 454 ~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
.+||++.++++ .+..|...|.++.|+|...|+++++-|
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD 294 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEeccc
Confidence 99999999988 488999999999999999999998755
No 49
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.8e-22 Score=194.74 Aligned_cols=231 Identities=20% Similarity=0.280 Sum_probs=192.2
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEe
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWd 312 (493)
..+.+.++.|..||.+||+|...|.|+|+|.+... ....+++|+.+|..+.|+| ++..|++|+.|+.+++||
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHH-------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 34667779999999999999999999999955421 1234789999999999999 456788999999999999
Q ss_pred cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
+.+......+..+..-+.|..+.+.... ..++++.|+.+.+|+.+... .++.+ ..|..+|.
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~h---------------ivvtGsYDg~vrl~DtR~~~---~~v~e-lnhg~pVe 200 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDH---------------IVVTGSYDGKVRLWDTRSLT---SRVVE-LNHGCPVE 200 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCe---------------EEEecCCCceEEEEEeccCC---ceeEE-ecCCCcee
Confidence 9999876678888888888777665533 34578899999999987643 22333 45899999
Q ss_pred EEEEeCCC-eEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC
Q 011126 393 DLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI 469 (493)
Q Consensus 393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~ 469 (493)
.+.+-|.| ++++++. ..|+|||+-++ +.+..+. |...|||+.+.. ++..|++|+.|+.|+|||+.+.+++.-...
T Consensus 201 ~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~ 278 (487)
T KOG0310|consen 201 SVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWKY 278 (487)
T ss_pred eEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeeec
Confidence 99999998 7777764 67999999855 4444444 999999999999 899999999999999999999999988888
Q ss_pred CCCeEEEEEccCCCEEEEeecCC
Q 011126 470 REIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 470 ~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.++|.+++.+||++.+++|..++
T Consensus 279 ~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 279 PGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred ccceeeEEecCCCceEEEecccc
Confidence 99999999999999999998765
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.5e-22 Score=177.59 Aligned_cols=249 Identities=20% Similarity=0.237 Sum_probs=194.0
Q ss_pred ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (493)
+...+.|+..++..+.|+-+|+|.++++.|.+|++|+..... ..+++.+|...|..++.+.|...+++|+.|.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccccccccCCCCc
Confidence 344577888999999999999999999999999999976443 4567899999999999999999999999999
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCC--------CCceeeeeccCc------------------cccceeeeec
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINH--------LSQLIPIDVDKE------------------KIDKTKSLRK 360 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~------------------~~~~~~~~~~ 360 (493)
.|.+||+.+|+..+.+..|...+..+.|.... ...+..++.-.. .+....++.+
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaG 161 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAG 161 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEee
Confidence 99999999999999999988877776654322 111222221111 1122334667
Q ss_pred CCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CC--CcEEEEEE
Q 011126 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HN--NYVTSVAF 436 (493)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~--~~V~~v~f 436 (493)
+.++++..++.+...+.. .--..+|++++|++++ .++.++.|++|++.|-.+++.++.+. |. .+-...++
T Consensus 162 S~DGtvRtydiR~G~l~s------Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSS------DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred ccCCcEEEEEeecceeeh------hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 777887777776554321 1235689999999999 88999999999999999999998886 54 45566778
Q ss_pred ccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCC-eEEEEEccCCCEEEEee
Q 011126 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI-VSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~-I~sv~~spdG~~l~s~s 489 (493)
+. ....+++|+.||.|++||+-...++. +..+... |+++.++|.-..+++++
T Consensus 236 ~q-sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 236 NQ-SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred cc-cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence 87 78899999999999999999988774 5555555 89999999876665554
No 51
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=1.4e-21 Score=202.64 Aligned_cols=199 Identities=21% Similarity=0.276 Sum_probs=153.4
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccc------cccceeeecccCCEEEEEEcc-CCCEEEEEECCCcE
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS------LYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV 308 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~------~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V 308 (493)
..+.....++++..+++++.+..+..|+.......+.. ......+.+|.+.|++++|+| ++++|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 33444556677666677766776677765433211100 011224789999999999999 88999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
+|||+.++..... ...++..+.+|.
T Consensus 101 kIWdi~~~~~~~~-------------------------------------------------------~~~~l~~L~gH~ 125 (493)
T PTZ00421 101 MGWGIPEEGLTQN-------------------------------------------------------ISDPIVHLQGHT 125 (493)
T ss_pred EEEecCCCccccc-------------------------------------------------------cCcceEEecCCC
Confidence 9999865421100 012356678999
Q ss_pred CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 011126 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (493)
Q Consensus 389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~- 464 (493)
..|.+++|+|.+ +|++++.|++|+|||+.+++.+..+. |...|++++|+| ++.+|++++.|++|+|||+++++.+
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEE
Confidence 999999999975 89999999999999999999888886 899999999999 9999999999999999999998876
Q ss_pred EecCCCCC-eEEEEEccCCCEEEEeec
Q 011126 465 DYTDIREI-VSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 465 ~~~~~~~~-I~sv~~spdG~~l~s~s~ 490 (493)
.+..|... +..+.|.|++..+++++.
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEec
Confidence 45666554 457789999888877653
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.8e-22 Score=204.79 Aligned_cols=239 Identities=19% Similarity=0.243 Sum_probs=186.1
Q ss_pred cee-eeecccccceeccCCCeEEeeecCCeEEEEECCCccc---------------------------c--c----c---
Q 011126 230 AMA-RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR---------------------------E--L----S--- 272 (493)
Q Consensus 230 ~~~-~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~---------------------------~--~----~--- 272 (493)
.+. .|.+.|.++.|++||+|||+|+.|+.|+||.+..... . . .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 6778888899999999999999999999998865000 0 0 0
Q ss_pred -----------------ccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEe
Q 011126 273 -----------------SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335 (493)
Q Consensus 273 -----------------~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~ 335 (493)
.-.+..+|.||.+.|..|.|+.++ +|++++.|.+||+|++...+++..|.. ..-++|++|.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEec-CCeeEEEEec
Confidence 001123588999999999999765 899999999999999999998888764 4457888887
Q ss_pred eCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEE
Q 011126 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW 414 (493)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lW 414 (493)
|..... ++.++-|+.+.+|.+...+ +.....-..-|++++|.|+| ..+.|+.+|.+++|
T Consensus 419 PvDDry---------------FiSGSLD~KvRiWsI~d~~-----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY 478 (712)
T KOG0283|consen 419 PVDDRY---------------FISGSLDGKVRLWSISDKK-----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY 478 (712)
T ss_pred ccCCCc---------------EeecccccceEEeecCcCe-----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEE
Confidence 766543 4577888888888764322 33333334789999999999 99999999999999
Q ss_pred ECCCCcEEEEec----------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCC--CeEEEEEccC
Q 011126 415 QVGIDRCLRVFS----------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIRE--IVSAVCYCPD 481 (493)
Q Consensus 415 d~~~~~~~~~~~----------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~--~I~sv~~spd 481 (493)
+....+....+. |. .||.++|.|.+...+++.+.|.+|||+|+++.+++ .+.++.. .-....|+.|
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSD 557 (712)
T ss_pred EccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccC
Confidence 998877665553 33 79999999977777888899999999999988877 3544432 3456789999
Q ss_pred CCEEEEeecC
Q 011126 482 GKVRQNSACN 491 (493)
Q Consensus 482 G~~l~s~s~d 491 (493)
|++|++++-|
T Consensus 558 gk~IVs~seD 567 (712)
T KOG0283|consen 558 GKHIVSASED 567 (712)
T ss_pred CCEEEEeecC
Confidence 9999999855
No 53
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=2.6e-22 Score=191.13 Aligned_cols=233 Identities=19% Similarity=0.275 Sum_probs=184.5
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (493)
++.+.+....+..+.|.++++++++++.|+.+++|++.... ...++.+|++.|+++.|......+++|+.|.+
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT 284 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-------hhhhhcccccceeeehhhccccceeeccccch
Confidence 34566677778889999999999999999999999987443 33468899999999999887767999999999
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
|++||+....+.+++..... |..+.. .....+.+..+.++..|+.+... +......|
T Consensus 285 iK~WDl~k~~C~kt~l~~S~---cnDI~~----------------~~~~~~SgH~DkkvRfwD~Rs~~----~~~sv~~g 341 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTVLPGSQ---CNDIVC----------------SISDVISGHFDKKVRFWDIRSAD----KTRSVPLG 341 (459)
T ss_pred hhhhhhhhhheecccccccc---ccceEe----------------cceeeeecccccceEEEeccCCc----eeeEeecC
Confidence 99999998777665432211 111100 02334566677778888765533 34555555
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
. .|+++..++++ .|++++.|.++.+.|+++.....++. .....+.+.|+| ++.|+++||.||.|+||++.++
T Consensus 342 g-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 342 G-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred c-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCc
Confidence 4 89999999999 89999999999999999999888885 345589999999 9999999999999999999999
Q ss_pred eEEE-e--cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 462 QVVD-Y--TDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 462 ~~~~-~--~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++.. . ......|++++|+|.|.+|++++.++
T Consensus 420 KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 420 KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred eEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence 9874 2 22233699999999999999988765
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=9.1e-22 Score=199.33 Aligned_cols=234 Identities=18% Similarity=0.270 Sum_probs=187.6
Q ss_pred ecccccce-eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 235 IDRHGSAT-LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 235 ~~~~~~~~-fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
.+.+..++ +.|+.++||++++.+.+|+|+..+... +.+.||+..|.++....+|.+|+||+.|+++++|.+
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC--------QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL 394 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCce--------EEEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence 34444444 478889999999999999998764432 267899999999996667889999999999999988
Q ss_pred CCCe----eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce-----EEE
Q 011126 314 IEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL-----HEF 384 (493)
Q Consensus 314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-----~~~ 384 (493)
+.+. ++.....+...+.++.++. .....+...+.|..+.+|+...-.-...++ .+.
T Consensus 395 ~~~~~~~~~~a~~~gH~~svgava~~~---------------~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 395 NNNCSKSLCVAQANGHTNSVGAVAGSK---------------LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred cCCcchhhhhhhhcccccccceeeecc---------------cCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 4433 2333444555555554422 223445677888888888876522211111 134
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
..|...|++++++|+. +++|||.|++.+||++...+.+.++. |...|+||.|+| ..+.++|+|.|++|+||.+.+..
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFS 538 (775)
T ss_pred HhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccce
Confidence 5799999999999999 99999999999999999999999997 999999999999 89999999999999999999999
Q ss_pred EEE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 463 VVD-YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 463 ~~~-~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++. +.+|...|..+.|-.+|+.|+++++|+
T Consensus 539 ClkT~eGH~~aVlra~F~~~~~qliS~~adG 569 (775)
T KOG0319|consen 539 CLKTFEGHTSAVLRASFIRNGKQLISAGADG 569 (775)
T ss_pred eeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence 885 778999999999999999999999885
No 55
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.5e-21 Score=188.40 Aligned_cols=228 Identities=18% Similarity=0.267 Sum_probs=184.0
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
.|...+-++++++||+|||+|+.|..|.||+..+.. ..+.+.+|.+.|.+++|-.....|++++.|++|++|+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 567777789999999999999999999999987443 4456899999999999998888999999999999999
Q ss_pred cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
+.....+.++..|+..+..+....- ......+..|.++.+|.. .+.....+.+|.+.+-
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~r----------------eR~vtVGgrDrT~rlwKi-----~eesqlifrg~~~sid 331 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSR----------------ERCVTVGGRDRTVRLWKI-----PEESQLIFRGGEGSID 331 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcc----------------cceEEeccccceeEEEec-----cccceeeeeCCCCCee
Confidence 9888777777666554433221110 111234556777777755 3444566889999999
Q ss_pred EEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec--C-----------CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--H-----------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 393 ~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~--h-----------~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
|++|-.+.++++|+.+|.|.||++...+++.+.. | ..+|++++..| ..+++++|+.+|.||+|-+.
T Consensus 332 cv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 332 CVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred eEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEec
Confidence 9999988899999999999999999999888764 2 12899999999 99999999999999999998
Q ss_pred CC----eEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 460 RC----QVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 460 ~~----~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+ .++.-....+-|++|+|+++|+.+++|.
T Consensus 411 ~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 411 DGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred CCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 87 3444455788999999999999887764
No 56
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=5.8e-21 Score=199.27 Aligned_cols=177 Identities=18% Similarity=0.314 Sum_probs=144.1
Q ss_pred eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCeee-eeeeccCCCCc
Q 011126 253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERL-DGFDVQDTDPS 330 (493)
Q Consensus 253 gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~-~~~~~~~~~~~ 330 (493)
|+.++.|++|+..... ....+.+|.+.|++++|+|+ +.+||+|+.||+|+|||+.++... ..+
T Consensus 50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i-------- 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI-------- 114 (568)
T ss_pred CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------
Confidence 6678899999876432 23457899999999999996 789999999999999999754210 000
Q ss_pred eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCC
Q 011126 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD 408 (493)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~D 408 (493)
..++..+.+|...|.+++|+|++ +|++++.|
T Consensus 115 -----------------------------------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 115 -----------------------------------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred -----------------------------------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 01244567899999999999988 56799999
Q ss_pred CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEE-----EEEccCC
Q 011126 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA-----VCYCPDG 482 (493)
Q Consensus 409 g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~s-----v~~spdG 482 (493)
++|+|||+++++.+..+.|...|.+++|+| ++.+|++++.|++|+|||+++++.+ .+..|.+.+.. ..|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999999999999888888888999999999 9999999999999999999999877 46777765433 3456899
Q ss_pred CEEEEeecCC
Q 011126 483 KVRQNSACNF 492 (493)
Q Consensus 483 ~~l~s~s~d~ 492 (493)
.+|++++.++
T Consensus 227 ~~IlTtG~d~ 236 (568)
T PTZ00420 227 NYILSTGFSK 236 (568)
T ss_pred CEEEEEEcCC
Confidence 9999988653
No 57
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=5.7e-21 Score=199.30 Aligned_cols=201 Identities=14% Similarity=0.237 Sum_probs=150.9
Q ss_pred cCceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCccccccc-cccceeeecccCCEEEEEEccCCCE-EEEEEC
Q 011126 228 LGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSLDGQY-LASGGE 304 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fspdg~~-Lasgs~ 304 (493)
+..+.+|...+.+++|+|+ +.+||+|+.|++|+||++......... ......+.+|...|.+++|+|++.. |++++.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~ 146 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence 3356678888999999997 789999999999999999754221111 1123357899999999999998875 579999
Q ss_pred CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
|++|+|||+.+++.+. .+
T Consensus 147 DgtIrIWDl~tg~~~~--------------------------------------------------------------~i 164 (568)
T PTZ00420 147 DSFVNIWDIENEKRAF--------------------------------------------------------------QI 164 (568)
T ss_pred CCeEEEEECCCCcEEE--------------------------------------------------------------EE
Confidence 9999999997765321 11
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEE-----EEEccCCCCEEEEEeCCC----eE
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS-----VAFNPVDDNYFISGSIDG----KV 453 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~-----v~fsp~d~~~l~sgs~Dg----~V 453 (493)
. |...|.+++|+|+| +|++++.|++|+|||+++++.+..+. |.+.+.+ ..|++ ++.+|++++.|+ .|
T Consensus 165 ~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~V 242 (568)
T PTZ00420 165 N-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREM 242 (568)
T ss_pred e-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEE
Confidence 1 34679999999999 89999999999999999999988875 7765433 34557 888999988775 79
Q ss_pred EEEeCCC-CeEEEec---CCCCCeEEEEEccCCCEEEEeecCC
Q 011126 454 RIWEVRR-CQVVDYT---DIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 454 ~IWdl~~-~~~~~~~---~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+|||+++ .+++... .....+...-..++|.++++|..|.
T Consensus 243 kLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 243 KLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred EEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 9999995 4544332 2333344444455688888887775
No 58
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.7e-21 Score=185.33 Aligned_cols=263 Identities=19% Similarity=0.241 Sum_probs=201.0
Q ss_pred ccCCcceeeeecCCCceeE-EccCCCchhhhhccccccCCCcccccccccCCCCCCccccccCCccccccccchhhhhhh
Q 011126 141 LKDHAACRIDDWGKGADLV-VSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK 219 (493)
Q Consensus 141 ~~~~~~~~~~~ld~g~~~v-~~~~~~~~~~~~~~lr~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~ 219 (493)
+.++..|.++||.+|+..+ ++.....++.. +..+. +.++.++.+.+-.- .+|++.+.+..-
T Consensus 14 S~d~~~~~~~dl~TGt~~~~ykg~~~a~~~s---l~~l~-~~yllsaq~~rp~l----~vw~i~k~~~~~---------- 75 (476)
T KOG0646|consen 14 SFDPINCIVWDLRTGTSLLQYKGSYLAQAAS---LTALN-NEYLLSAQLKRPLL----HVWEILKKDQVV---------- 75 (476)
T ss_pred CCCCcceeEEecCCCceeEEecCcccccchh---hhhhc-hhheeeecccCccc----cccccCchhhhh----------
Confidence 3456679999999999988 66663333333 22222 35555555554422 266655432111
Q ss_pred hccccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE
Q 011126 220 VKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299 (493)
Q Consensus 220 ~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L 299 (493)
...-....+.+++-+|.|.+|+.|+..|.+++|.+..+.. ...+.+|-..|+|++|+.||.+|
T Consensus 76 ----------q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-------L~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 76 ----------QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-------LNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred ----------hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH-------HHHHHhhccceeEEEEeCCCcEE
Confidence 0011224566788999999999999999999999886652 22467899999999999999999
Q ss_pred EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeeccc
Q 011126 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (493)
Q Consensus 300 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (493)
+|||.||.|.+|.+..-- ..+. + ...+
T Consensus 139 iTgskDg~V~vW~l~~lv-----------------~a~~------------------------~------------~~~~ 165 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLV-----------------SADN------------------------D------------HSVK 165 (476)
T ss_pred EecCCCccEEEEEEEeec-----------------cccc------------------------C------------CCcc
Confidence 999999999999873210 0000 0 0135
Q ss_pred ceEEEecCCCCEeEEEEeCCC---eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126 380 PLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (493)
Q Consensus 380 ~~~~~~~h~~~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW 456 (493)
|++.+..|+-+|+++...+.| +|+|++.|.++++||+..+..+.++.....+.+++.+| .++.+..|+.+|+|.+.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQN 244 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEee
Confidence 788899999999999998876 99999999999999999999999999999999999999 89999999999999998
Q ss_pred eCCCCe-----------------EEEecCCCC--CeEEEEEccCCCEEEEeecCC
Q 011126 457 EVRRCQ-----------------VVDYTDIRE--IVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 457 dl~~~~-----------------~~~~~~~~~--~I~sv~~spdG~~l~s~s~d~ 492 (493)
++.+.. ...+.+|.+ .|++++++-||..|++|+.|.
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg 299 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG 299 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence 875322 224677887 999999999999999998875
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=1.1e-21 Score=198.95 Aligned_cols=228 Identities=24% Similarity=0.432 Sum_probs=176.6
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC-
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE- 315 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~- 315 (493)
.+-+..|-|.++++++|...|.+.|+|+.... ...++++|.+.|+.|+.+||+..+++|+.|.+|++||..-
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~ 486 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASAS-------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV 486 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhh-------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence 34457888999999999999999999876332 3345789999999999999999999999999999999731
Q ss_pred ----Ceeeeeeecc-------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 316 ----HERLDGFDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 316 ----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
+...+.+... ...+.|+.++|++ .++++. --+.++.++-...+ +....+
T Consensus 487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVs--------------LLdnTVkVyflDtl----KFflsL 546 (888)
T KOG0306|consen 487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVS--------------LLDNTVKVYFLDTL----KFFLSL 546 (888)
T ss_pred eccCcccceeeeeccceEEeccccEEEEEEcCCC--cEEEEE--------------eccCeEEEEEecce----eeeeee
Confidence 1111111111 2233344444333 222221 12223333322222 335678
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
.||.-+|.|+..+|+. +++||+.|+.|+||-+.=|.|.+.| .|.+.|.++.|.| ...+|.++|.|++|+-||-..-+
T Consensus 547 YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 547 YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhh
Confidence 9999999999999999 9999999999999999999998876 5999999999999 88999999999999999998877
Q ss_pred EE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 463 VV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 463 ~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.+ .+.+|...|++++..|+|.+++++++|+
T Consensus 626 ~iq~L~~H~~ev~cLav~~~G~~vvs~shD~ 656 (888)
T KOG0306|consen 626 EIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK 656 (888)
T ss_pred hheeeccchheeeeeEEcCCCCeEEeccCCc
Confidence 66 6899999999999999999999999986
No 60
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.1e-21 Score=187.44 Aligned_cols=241 Identities=19% Similarity=0.253 Sum_probs=185.7
Q ss_pred eecccccceeccCCC-eEEeeecCCeEEEEECCCcccccc---ccccceeeecccCCEEEEEEccCCC-EEEEEECCCcE
Q 011126 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTV 308 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V 308 (493)
|.+.++.+..-|... ++|+++..+.|.|||+.+...... ...+.-.+.+|+..-+.|.|++... +|++|+.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 445566677777665 566688899999999986543322 2334447899999889999999543 89999999999
Q ss_pred EEEecCCCee-------eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126 309 RVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (493)
Q Consensus 309 ~iWdl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (493)
++||+..... ...+..+...+..+.|.+.+.. .+...+.++.+.+|+.+.. ..++.
T Consensus 203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~---------------lF~sv~dd~~L~iwD~R~~--~~~~~ 265 (422)
T KOG0264|consen 203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED---------------LFGSVGDDGKLMIWDTRSN--TSKPS 265 (422)
T ss_pred EEEeccccccCCccccceEEeecCCcceehhhccccchh---------------hheeecCCCeEEEEEcCCC--CCCCc
Confidence 9999965432 2334444444444444444332 2345567888999999884 67888
Q ss_pred EEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126 382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (493)
Q Consensus 382 ~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd 457 (493)
+...+|.+.|+|++|+|-+ +||||+.|++|+|||++.- .++.++. |.+.|.+|.|+|.....||+++.|+.+.|||
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 8899999999999999977 9999999999999999863 4666665 9999999999998889999999999999999
Q ss_pred CCCC--------------e-EEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 458 VRRC--------------Q-VVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 458 l~~~--------------~-~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+..- + +....+|...|+.+.|+|+..+++++..+
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence 9631 1 13467899999999999999988877654
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=6.7e-22 Score=186.59 Aligned_cols=195 Identities=19% Similarity=0.314 Sum_probs=160.1
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCcc------------------ccccccccceeeecccCCEEEEEEcc
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS------------------RELSSLYTGQEFLAHEGSILTMKFSL 294 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~------------------~~~~~~~~~~~l~~H~~~I~~l~fsp 294 (493)
+|...+.++...++|..+++|+.|.+|+||+..... ++.....+.-++.||+.+|.++.|++
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 788899999999999999999999999999932210 01112223346899999999999988
Q ss_pred CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
...+++++.|.+|+.||+.++..+..+.
T Consensus 271 -~~v~yS~SwDHTIk~WDletg~~~~~~~--------------------------------------------------- 298 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETGGLKSTLT--------------------------------------------------- 298 (423)
T ss_pred -CCceEeecccceEEEEEeecccceeeee---------------------------------------------------
Confidence 6689999999999999999887544332
Q ss_pred eecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE---EEE-ecCCCcEEEEEEccCCCCEEEEEeC
Q 011126 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC---LRV-FSHNNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~---~~~-~~h~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
-...++++.++|.. +|++|+.|..|+|||.+++.- ... ..|.+.|.++.|+|.+...|++|+.
T Consensus 299 ------------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 299 ------------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred ------------cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEec
Confidence 13567899999987 999999999999999987642 222 3599999999999988899999999
Q ss_pred CCeEEEEeCCCCe--EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 450 DGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 450 Dg~V~IWdl~~~~--~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|+++++||+++.+ +..+..|.+.|.++.|+. |.++++||.|+
T Consensus 367 D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~ 410 (423)
T KOG0313|consen 367 DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN 410 (423)
T ss_pred CCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence 9999999999766 457899999999999975 55888998885
No 62
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-21 Score=175.23 Aligned_cols=242 Identities=20% Similarity=0.264 Sum_probs=183.9
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V 308 (493)
.+.|.+.+..+.+.-.|+.||+++.|++|+|+.+++... .....+|.||.++|+.+.|.. .|.+||++++||.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 456778888888999999999999999999999987653 234557999999999999965 89999999999999
Q ss_pred EEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 309 ~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
.||.-..++ .......+...+.++.+.++....++.+.... +.+-++..+.-.. .........
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD--------------G~vsvl~~~~~g~-w~t~ki~~a 147 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD--------------GKVSVLTYDSSGG-WTTSKIVFA 147 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC--------------CcEEEEEEcCCCC-ccchhhhhc
Confidence 999987774 33445566777888889888877666554433 3333322211100 011223467
Q ss_pred CCCCEeEEEEeCC---C------------eEEEEeCCCeEEEEECCCCcEE--EEe-cCCCcEEEEEEccCCC---CEEE
Q 011126 387 HSSEVLDLSWSKN---G------------FLLSSSADKTVRLWQVGIDRCL--RVF-SHNNYVTSVAFNPVDD---NYFI 445 (493)
Q Consensus 387 h~~~V~~l~~sp~---g------------~l~sgs~Dg~V~lWd~~~~~~~--~~~-~h~~~V~~v~fsp~d~---~~l~ 445 (493)
|.-.|++++|.|- | .|++|+.|..|+||+...++-+ +++ .|.+.|..++|.|..+ .+||
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 9999999999885 1 4999999999999999876322 223 3999999999999432 4899
Q ss_pred EEeCCCeEEEEeCCCC----eEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 446 SGSIDGKVRIWEVRRC----QVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 446 sgs~Dg~V~IWdl~~~----~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+++.||+|.||-.+.. +..-+......+..++|++.|.+|++++.|
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd 277 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD 277 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCC
Confidence 9999999999987732 112245577889999999999999988765
No 63
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.4e-22 Score=197.82 Aligned_cols=233 Identities=19% Similarity=0.275 Sum_probs=193.4
Q ss_pred ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC--eeeee
Q 011126 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH--ERLDG 321 (493)
Q Consensus 244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~--~~~~~ 321 (493)
.|.+++|.+|++||.|++|+......+.+.. ....++.|.+.|+.|....+|+.|++++.|-+|++|+...+ -++..
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh
Confidence 3567789999999999999988666544433 23468899999999999999999999999999999999877 56777
Q ss_pred eeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee------cccceEEEe-cCCCCEeEE
Q 011126 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL------LEKPLHEFQ-GHSSEVLDL 394 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~------~~~~~~~~~-~h~~~V~~l 394 (493)
+..|..-+.|++..... ......++-+..+++|+...... ...+...+. |+...|+++
T Consensus 113 ir~H~DYVkcla~~ak~---------------~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKN---------------NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred hhcccchheeeeecccC---------------ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 88888878887764222 22345677788888888874411 122334444 899999999
Q ss_pred EEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCC
Q 011126 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIRE 471 (493)
Q Consensus 395 ~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~ 471 (493)
+.++.| .+++|+..+.|++||.++++.+..+ +|.+.|.++..++ ||+.+++++.||+|++||+...+.+ .+..|..
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 999999 9999999999999999988776666 4999999999999 9999999999999999999988877 5888999
Q ss_pred CeEEEEEccCCCEEEEeecCCC
Q 011126 472 IVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 472 ~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.|+++..+|+=+.+++|+.|++
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCc
Confidence 9999999999999999998875
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=8.9e-22 Score=207.59 Aligned_cols=208 Identities=25% Similarity=0.405 Sum_probs=160.8
Q ss_pred cccceeccCCCeEEeee--cCCeEEEEECCCccccccc-----cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 238 HGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSS-----LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs--~dg~V~vwd~~~~~~~~~~-----~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+-++.++|+|..+|+|+ .|+.++||+...-..+... ....-+...|.+.|+|+.|+|||++||+|+.|+.|.|
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 56799999999999999 8999999987643221110 1112245679999999999999999999999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
|..... ... .+....++ ...+ . ..+.+..+.+|.+.
T Consensus 96 W~~~~~-~~~----------~~fgs~g~------------------------~~~v-----E----~wk~~~~l~~H~~D 131 (942)
T KOG0973|consen 96 WERAEI-GSG----------TVFGSTGG------------------------AKNV-----E----SWKVVSILRGHDSD 131 (942)
T ss_pred eeeccc-CCc----------cccccccc------------------------cccc-----c----eeeEEEEEecCCCc
Confidence 987531 000 00000000 0000 0 01346778999999
Q ss_pred EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec
Q 011126 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT 467 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~ 467 (493)
|.+++|+|++ +|++++.|++|.||+.++..+++++. |...|..+.|.| -|+|||+-+.|++|+||++.+..+.+ ..
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeec
Confidence 9999999999 99999999999999999999999987 999999999999 99999999999999999988765553 21
Q ss_pred ------CCCCCeEEEEEccCCCEEEEeec
Q 011126 468 ------DIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 468 ------~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.....+..+.|+|||++|++..+
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred cchhhCCCcceeeecccCCCcCeecchhh
Confidence 22345889999999999998653
No 65
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.5e-21 Score=192.22 Aligned_cols=230 Identities=16% Similarity=0.295 Sum_probs=190.4
Q ss_pred ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeec-ccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
.+.+.++.|+++|.+||+|..+|.|.|||...... ...+.+ |...|-+++|+ +..+.+|+.|+.|.++|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-------~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-------TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-------cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 46677899999999999999999999999875443 224556 99999999998 678999999999999999
Q ss_pred CCCeeeee-eeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 314 IEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
...+.... +..|...+..+.|+.++ .....++.|..+.+|+. ....+...+..|.++|.
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~----------------~~lASGgnDN~~~Iwd~----~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDG----------------NQLASGGNDNVVFIWDG----LSPEPKFTFTEHTAAVK 347 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCC----------------CeeccCCCccceEeccC----CCccccEEEeccceeee
Confidence 88776555 55666666666665544 34467888899999988 33467888999999999
Q ss_pred EEEEeCCC--eEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCCCeEE-Ee
Q 011126 393 DLSWSKNG--FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV-DY 466 (493)
Q Consensus 393 ~l~~sp~g--~l~sgs--~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~~~~~-~~ 466 (493)
.++|+|-. +||+|+ .|++|++||..++..+..+.....|.+|.|+|....++.+.+ .++.|.||+..+.+.+ .+
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l 427 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL 427 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee
Confidence 99999965 888874 799999999999999999999999999999993334444433 4678999999987766 58
Q ss_pred cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 467 TDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 467 ~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.+|...|..++++|||..+++|+.|-+
T Consensus 428 ~gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 428 LGHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred cCCcceeEEEEECCCCCEEEEecccCc
Confidence 999999999999999999999998853
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=187.67 Aligned_cols=225 Identities=16% Similarity=0.253 Sum_probs=171.6
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
+...|....+++|+.|..+.++|....+ ....+.||+..|+.+.|+|+...+++++.|..|+||.........
T Consensus 225 ld~~~s~~~ilTGG~d~~av~~d~~s~q-------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~ 297 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDKTAVLFDKPSNQ-------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT 297 (506)
T ss_pred EeecCCCCcceecCCCCceEEEecchhh-------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence 4455556899999999999999987544 234689999999999999999999999999999999998777666
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 400 (493)
....+..++..+...+.+... +..+.++.....+........ +..-....-.+++++|+|+|
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYl----------------lsAs~d~~w~Fsd~~~g~~lt--~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYL----------------LSASNDGTWAFSDISSGSQLT--VVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred ccccccccceeeeeccCCcEE----------------EEecCCceEEEEEccCCcEEE--EEeeccccceeEEeeEcCCc
Confidence 666666666665555444322 222333333222222211100 11111223468999999999
Q ss_pred -eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCCeEEE
Q 011126 401 -FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAV 476 (493)
Q Consensus 401 -~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~I~sv 476 (493)
+|.+|..|+.|+|||+..+..+..|. |.++|..|+|+. +|.||++++.|+.|++||++.-+.+.. ......+.++
T Consensus 360 Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~ 438 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSL 438 (506)
T ss_pred eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeE
Confidence 99999999999999999999988887 999999999999 999999999999999999998765532 2333479999
Q ss_pred EEccCCCEEEEeecC
Q 011126 477 CYCPDGKVRQNSACN 491 (493)
Q Consensus 477 ~~spdG~~l~s~s~d 491 (493)
+|.+.|++|++++.+
T Consensus 439 ~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 439 SFDQSGTYLGIAGSD 453 (506)
T ss_pred EEcCCCCeEEeecce
Confidence 999999999999765
No 67
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=7.6e-21 Score=178.75 Aligned_cols=206 Identities=20% Similarity=0.293 Sum_probs=149.4
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
+.|||-+..|++|+.||.|.+|.+.+. ...+.+.||+.++++-.|.|+|+.++++..||+|++|+..+++++.
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~-------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQ-------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCc-------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 445666666666666666666655532 1234688999999999999999999999999999999999999888
Q ss_pred eeeccCC-CCceE--------EEeeCCCCceeeeeccCccc-----------------------------cceeeeecCC
Q 011126 321 GFDVQDT-DPSCL--------YFTINHLSQLIPIDVDKEKI-----------------------------DKTKSLRKSS 362 (493)
Q Consensus 321 ~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~s~ 362 (493)
.+..... ...++ .+..+....+..++...+++ .......++.
T Consensus 227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v 306 (399)
T KOG0296|consen 227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV 306 (399)
T ss_pred EecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence 7762221 11111 11111111111111111111 0112245677
Q ss_pred CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCC
Q 011126 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD 441 (493)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~ 441 (493)
++.+.+|+...+. ++..-.|...|+.+.|-++.+|++++.+|.|+.||.++++++.++. |...|.+++++| +.
T Consensus 307 dG~i~iyD~a~~~-----~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~ 380 (399)
T KOG0296|consen 307 DGTIAIYDLAAST-----LRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QK 380 (399)
T ss_pred cceEEEEecccch-----hheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CC
Confidence 8888888776554 3445568899999999995599999999999999999999999996 999999999999 99
Q ss_pred CEEEEEeCCCeEEEEeCC
Q 011126 442 NYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 442 ~~l~sgs~Dg~V~IWdl~ 459 (493)
++++|+|.|++.+|++..
T Consensus 381 ~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 381 RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cEEEEecCCCeEEEEecC
Confidence 999999999999999874
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.88 E-value=1.4e-22 Score=188.98 Aligned_cols=244 Identities=20% Similarity=0.355 Sum_probs=181.4
Q ss_pred cccchhhhhhhhccccccccC----ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc
Q 011126 209 ESRDLVDAKRKVKRGWLKKLG----AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE 284 (493)
Q Consensus 209 ~~~~~~~~~~~~k~~w~~~~~----~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~ 284 (493)
+..-..|.+....+.|.+... .+.+|.+.+- ++.-+.+.+++|+.|.+|+|||++++. +.+++.+|.
T Consensus 207 D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL--CLqyd~rviisGSSDsTvrvWDv~tge-------~l~tlihHc 277 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL--CLQYDERVIVSGSSDSTVRVWDVNTGE-------PLNTLIHHC 277 (499)
T ss_pred chhhhcccccCceEEeccccHHHHHhhhcCCCcEE--eeeccceEEEecCCCceEEEEeccCCc-------hhhHHhhhc
Confidence 333445667777788876543 3556665554 445566799999999999999998654 344678899
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEecCCCeee---eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecC
Q 011126 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (493)
Q Consensus 285 ~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 361 (493)
..|..+.|+ ..++++++.|.+|.+||+.....+ ..+..+...+. .++++. ......+
T Consensus 278 eaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN-------------vVdfd~-----kyIVsAS 337 (499)
T KOG0281|consen 278 EAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN-------------VVDFDD-----KYIVSAS 337 (499)
T ss_pred ceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee-------------eecccc-----ceEEEec
Confidence 999999997 449999999999999999765422 11222222221 222222 2456788
Q ss_pred CCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCC
Q 011126 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD 440 (493)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d 440 (493)
++.++.+|+..... .+.++.+|...|-|+.+... ++++|+.|.+|++||+.+|.|++.+. |..-|.||.| +
T Consensus 338 gDRTikvW~~st~e----fvRtl~gHkRGIAClQYr~r-lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d 409 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCE----FVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---D 409 (499)
T ss_pred CCceEEEEecccee----eehhhhcccccceehhccCe-EEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---c
Confidence 89999999887654 37889999999999987422 89999999999999999999999997 9999999999 5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeE----------EEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 441 DNYFISGSIDGKVRIWEVRRCQV----------VDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 441 ~~~l~sgs~Dg~V~IWdl~~~~~----------~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
...+++|+.||+|+|||+..+.- .....|.+.|..+.|. ...+++++.|
T Consensus 410 ~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHd 468 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHD 468 (499)
T ss_pred CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCC
Confidence 58899999999999999986531 1356778888888774 3455555544
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.3e-21 Score=175.74 Aligned_cols=231 Identities=19% Similarity=0.254 Sum_probs=182.5
Q ss_pred cccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEec
Q 011126 236 DRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 236 ~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl 313 (493)
|..-.++|+++. +.+++++.||+++|||...... +.+.++.|...|.++.|++ ++..+++++.|++|++|+.
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecC
Confidence 444458888865 5788899999999999765444 3345788999999999999 5667888899999999999
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (493)
..++.+.++..+..-+....+++...+. ....+.++.+.+|+.+.. .+++. +..|...|++
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nl---------------fas~Sgd~~l~lwdvr~~---gk~~~-i~ah~~Eil~ 195 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIYQAAFSPHIPNL---------------FASASGDGTLRLWDVRSP---GKFMS-IEAHNSEILC 195 (311)
T ss_pred CCCcceEeecCCccEEEEEecCCCCCCe---------------EEEccCCceEEEEEecCC---CceeE-EEeccceeEe
Confidence 9999899888876666666666555443 345678888999985543 44444 8899999999
Q ss_pred EEEeCCC--eEEEEeCCCeEEEEECCCCc-EEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--Eec
Q 011126 394 LSWSKNG--FLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYT 467 (493)
Q Consensus 394 l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~--~~~ 467 (493)
+.|+.-+ +|+||+.|+.||+||++.-+ ++..+ .|.-.|..|.|+|....+|++++.|=++||||.....-. ...
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~ 275 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD 275 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence 9999866 99999999999999998643 44444 499999999999988889999999999999999855432 466
Q ss_pred CCCCCeEEEEEccC-CCEEEEeecC
Q 011126 468 DIREIVSAVCYCPD-GKVRQNSACN 491 (493)
Q Consensus 468 ~~~~~I~sv~~spd-G~~l~s~s~d 491 (493)
.|.+-+..+.|++- +.+++..+-|
T Consensus 276 ~HtEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 276 HHTEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred ccceEEeccccccccCceeeecccc
Confidence 78888999999885 4456555544
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.5e-20 Score=163.17 Aligned_cols=242 Identities=18% Similarity=0.253 Sum_probs=191.1
Q ss_pred eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc----CCCEEEEEE-CCC
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGG-EDG 306 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~Lasgs-~Dg 306 (493)
..|...+.|.+|+|.|.+||+|+.|.+|++............ ..-+|.-|.+.|..++|-. .|.+|++++ .|.
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g--~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG--HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccC--cceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 446677888999999999999999999999987755543322 2235778999999999965 356788876 478
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
.|++-|..+++....+..+...+..++. + ....+..++.+.++..|+.++.......-..+.+
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilalys------------w-----n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALYS------------W-----NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD 226 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEEE------------e-----cCcEEEccCCCceEEEEeeeccceeeeccCcccC
Confidence 8888899998887777776654433321 1 1234567888999999988765432222222222
Q ss_pred ---CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 387 ---HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 387 ---h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
....|..++..|.| +|++|-.|....+||++.++.++.|. |...|.|+.|+| ...|+++|+.|.+|++-|+...
T Consensus 227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccc
Confidence 24689999999999 99999999999999999999999986 999999999999 8999999999999999999753
Q ss_pred -----eEEEecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 462 -----QVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 462 -----~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.++....|++.+..+.|+|..-.+++++.|++
T Consensus 306 la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 306 LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred hhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence 23456789999999999999999999888874
No 71
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=6.7e-21 Score=175.04 Aligned_cols=192 Identities=24% Similarity=0.410 Sum_probs=161.1
Q ss_pred eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC-CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceee
Q 011126 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (493)
Q Consensus 279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (493)
.+.+|++.|+.++|+|+|.+|||||.|..|.+|++. ..+....++.+...+..+.+..+. ...
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~----------------s~i 105 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG----------------SHI 105 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC----------------CEE
Confidence 468999999999999999999999999999999964 344455556655555555444433 233
Q ss_pred eecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEE
Q 011126 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (493)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~ 435 (493)
+..+.|..+..|+.... +.+..+++|..-|+.+.-+.-| ++.+++.|++++|||+++..+++++...-.++++.
T Consensus 106 ~S~gtDk~v~~wD~~tG----~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~ 181 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETG----KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVG 181 (338)
T ss_pred EEecCCceEEEEecccc----eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEE
Confidence 56677888999988764 4577889999999999865556 88899999999999999999999999889999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
|.. .+.-+.+|+.|+.|++||++..... .+.+|.++|+.+..+|+|.++++-+-|
T Consensus 182 f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 182 FKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred ecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc
Confidence 998 8999999999999999999988877 589999999999999999999876654
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=3.3e-21 Score=188.03 Aligned_cols=264 Identities=17% Similarity=0.219 Sum_probs=186.1
Q ss_pred ccccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE
Q 011126 221 KRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA 300 (493)
Q Consensus 221 k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La 300 (493)
+..-..+-..+.++...|.++++.|.|-.|++|+.|.+|++||+......+..+...+....| .|++++|++.|..|+
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~iL 230 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQIL 230 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeEE
Confidence 333344445577788888899999999999999999999999999877666554444333444 699999999999888
Q ss_pred EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (493)
+.+.....+|+|-.........+ ...-+..++-+..+...+.+..+.. ..+..+++.+.++.+.+|+........+.
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~K-GDQYI~Dm~nTKGHia~lt~g~whP--~~k~~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSK-GDQYIRDMYNTKGHIAELTCGCWHP--DNKEEFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred EEecCcceeEEccCCceeeeeec-cchhhhhhhccCCceeeeecccccc--CcccceEEecCCCcEEEEecCCchhheeE
Confidence 88888899999964443332222 2222222222222322222222222 22344567788999999988765533222
Q ss_pred eEEE--ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--EEe--cCCC--cEEEEEEccCCCCEEEEEeCCC
Q 011126 381 LHEF--QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVF--SHNN--YVTSVAFNPVDDNYFISGSIDG 451 (493)
Q Consensus 381 ~~~~--~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--~~~--~h~~--~V~~v~fsp~d~~~l~sgs~Dg 451 (493)
+... .+..-.++..+|+|+| +||+|+.||.|.+|+......- ..+ .|.. .|+||.|++ +|++|++=+.|+
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDD 386 (641)
T ss_pred EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCC
Confidence 2221 2344578899999999 9999999999999998654322 222 2766 999999999 999999999999
Q ss_pred eEEEEeCCCCe-EE-EecCC--CCCeEEEEEccCCCEEEEeec
Q 011126 452 KVRIWEVRRCQ-VV-DYTDI--REIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 452 ~V~IWdl~~~~-~~-~~~~~--~~~I~sv~~spdG~~l~s~s~ 490 (493)
++++||++..+ .+ .+.+. ..+-+.+||+|+.++|++|.+
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 99999999753 33 23333 346788999999999999875
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.87 E-value=2.3e-21 Score=173.74 Aligned_cols=190 Identities=19% Similarity=0.324 Sum_probs=168.1
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
|...+..++|+.|.++|++|+.+..++||+++....+.. ++.+|.+.|..+-|....+.|++..+|++||+||.
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~------E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK------EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch------hhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 445666799999999999999999999999986654433 67899999999999998889999999999999999
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (493)
.++..++.+.. ..+|++
T Consensus 173 rTgt~v~sL~~---------------------------------------------------------------~s~VtS 189 (334)
T KOG0278|consen 173 RTGTEVQSLEF---------------------------------------------------------------NSPVTS 189 (334)
T ss_pred ccCcEEEEEec---------------------------------------------------------------CCCCcc
Confidence 99987665532 456889
Q ss_pred EEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCC
Q 011126 394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIRE 471 (493)
Q Consensus 394 l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~ 471 (493)
+.++++|.+++-...+.|++||..+...++.+.....|.+..++| +..++++|+.|..++.||..++.-+. ..+|.+
T Consensus 190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g 268 (334)
T KOG0278|consen 190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG 268 (334)
T ss_pred eeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence 999999977777788999999999999999999889999999999 78999999999999999999997664 389999
Q ss_pred CeEEEEEccCCCEEEEeecCCC
Q 011126 472 IVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 472 ~I~sv~~spdG~~l~s~s~d~~ 493 (493)
+|.++.|+|||...++|+-|++
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ceEEEEECCCCceeeccCCCce
Confidence 9999999999999999998864
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=1e-20 Score=199.66 Aligned_cols=251 Identities=20% Similarity=0.233 Sum_probs=195.3
Q ss_pred cccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCC-----------ccccccccccceeeecccCCEEEEEEcc
Q 011126 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------QSRELSSLYTGQEFLAHEGSILTMKFSL 294 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~-----------~~~~~~~~~~~~~l~~H~~~I~~l~fsp 294 (493)
+.+..+..|...+.|+.|+|||.+||+|+.|+.|.||.... +......+.....+.+|.+.|..++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 34556777888899999999999999999999999999873 1122233445567899999999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
++.+|++++.|++|.||+..+.+.+..+..|...+..+.|-+.+ ..+...+.|..+.+|....|
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G----------------ky~ASqsdDrtikvwrt~dw 203 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG----------------KYFASQSDDRTLKVWRTSDW 203 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc----------------CeeeeecCCceEEEEEcccc
Confidence 99999999999999999999999999999998888887776544 23456778888999987666
Q ss_pred eecccceEEEe--cCCCCEeEEEEeCCC-eEEEEe----CCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccC----C--
Q 011126 375 RLLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV----D-- 440 (493)
Q Consensus 375 ~~~~~~~~~~~--~h~~~V~~l~~sp~g-~l~sgs----~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~----d-- 440 (493)
.+.......+. .-...+.-+.|+|+| +|++.. .-.++.|.+-.+.+.-..+ +|..++.++.|+|. .
T Consensus 204 ~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 204 GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence 55321111111 123467889999999 888763 3356888887776644444 69999999999983 1
Q ss_pred ------CC----EEEEEeCCCeEEEEeCCCCeEEE--ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 441 ------DN----YFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 441 ------~~----~l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++ .+|+|+.|++|-||.....+++. ..-....|..++|+|||..|.+.+-|+
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence 22 68899999999999998777663 334567899999999999999888775
No 75
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.8e-20 Score=166.69 Aligned_cols=189 Identities=20% Similarity=0.401 Sum_probs=160.9
Q ss_pred eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceee
Q 011126 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (493)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (493)
..+..|+++|..++|+-+|+|.++|+.|.+|++|+...+.+++++..+...+..+....+. ..+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn----------------skf 74 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN----------------SKF 74 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc----------------ccc
Confidence 3567899999999999999999999999999999999999999999887766555443332 344
Q ss_pred eecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC--CcEEEEec-CCCcEEE
Q 011126 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVFS-HNNYVTS 433 (493)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~--~~~~~~~~-h~~~V~~ 433 (493)
.....+..+.+|+....+ .++.+.+|.+.|+.++|+... .+++|+.|.+|++||.++ .++++++. ..+.|.+
T Consensus 75 ~s~GgDk~v~vwDV~TGk----v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S 150 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGK----VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS 150 (307)
T ss_pred ccCCCCceEEEEEcccCe----eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence 567788899999987654 478899999999999999988 999999999999999975 45677776 7789999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
|..+ +..|++|+.||++|.||++.|++.. +. ..+|++++|++||+..++++-|
T Consensus 151 i~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 151 IDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLD 204 (307)
T ss_pred EEec---ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeecc
Confidence 9985 4679999999999999999998773 44 4579999999999999888755
No 76
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=7.2e-22 Score=199.52 Aligned_cols=233 Identities=21% Similarity=0.353 Sum_probs=199.1
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
...+|...++++..-..++.+++|+.|..+-+|.+.+..... .|.+|.++|.+|.|++...+|++|+.+|+|+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------S~~~hespIeSl~f~~~E~LlaagsasgtiK 95 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-------SLTGHESPIESLTFDTSERLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-------eeeccCCcceeeecCcchhhhcccccCCcee
Confidence 455666677777777788999999999999999988665443 3789999999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+||+.+++.+.++..+...+..+.|.+.. .....++.+....+|+.+.. .+.+.+.+|..
T Consensus 96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~----------------~~~a~gStdtd~~iwD~Rk~----Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 96 VWDLEEAKIVRTLTGHLLNITSVDFHPYG----------------EFFASGSTDTDLKIWDIRKK----GCSHTYKSHTR 155 (825)
T ss_pred eeehhhhhhhhhhhccccCcceeeeccce----------------EEeccccccccceehhhhcc----CceeeecCCcc
Confidence 99999999888888887777777654433 22245677777777777642 45788899999
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-e
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y 466 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~ 466 (493)
.|..+.|+|+| +++.++.|.+++|||+..++.+..|. |...+..+.|+| ..-++++|+.|++|++||+++.+++. .
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeecc
Confidence 99999999999 99999999999999999999999998 999999999999 88999999999999999999999884 4
Q ss_pred cCCCCCeEEEEEccCCCEEEEeec
Q 011126 467 TDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 467 ~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
......|.++.|+|+|+.+++|-.
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred CCccCCceeeeecCCceeeecCch
Confidence 555778999999999999988753
No 77
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=3.5e-21 Score=180.76 Aligned_cols=234 Identities=16% Similarity=0.245 Sum_probs=184.6
Q ss_pred cccCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126 226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (493)
+-.+.+.+|.+.+.+++=+|.. ..+|+|+.||.|+|||+.... +...+++|.+.|..|++.. ..++++|.
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-------~~~~f~AH~G~V~Gi~v~~--~~~~tvgd 127 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-------CIRTFKAHEGLVRGICVTQ--TSFFTVGD 127 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-------hhheeecccCceeeEEecc--cceEEecC
Confidence 3456789999999999999998 789999999999999987433 4456899999999999986 67889999
Q ss_pred CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
|.+|+.|.+... .+.++... ..+..++. ........+....+-+|+... ..|+..+
T Consensus 128 DKtvK~wk~~~~-p~~tilg~--------------s~~~gIdh-----~~~~~~FaTcGe~i~IWD~~R----~~Pv~sm 183 (433)
T KOG0268|consen 128 DKTVKQWKIDGP-PLHTILGK--------------SVYLGIDH-----HRKNSVFATCGEQIDIWDEQR----DNPVSSM 183 (433)
T ss_pred CcceeeeeccCC-cceeeecc--------------cccccccc-----ccccccccccCceeeeccccc----CCcccee
Confidence 999999987542 22222111 00111100 011112233444566676543 4678888
Q ss_pred ecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
.-....|.++.|+|.. +|++|+.|+.|.|||++.+.+++..-....-+.|+|+| ..-.|++|+.|..++.+|++.-+
T Consensus 184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhc
Confidence 8888899999999986 89999999999999999999999888777788999999 99999999999999999999653
Q ss_pred -EE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 463 -VV-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 463 -~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.+ ...+|...|.++.|+|.|+-+++|+-|++
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhccccccce
Confidence 33 57899999999999999999999998864
No 78
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.1e-21 Score=195.50 Aligned_cols=230 Identities=18% Similarity=0.236 Sum_probs=181.3
Q ss_pred ceec-cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCee
Q 011126 241 ATLK-PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 241 ~~fs-p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
+.|+ -+.++||+++..|.|.+||+.+..... ..+.|..|+..|+++.|++ ...+|++|+.||+|++||++..+.
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk----~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNK----LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccch----hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4444 345789999999999999998732211 1224678999999999998 456899999999999999999888
Q ss_pred eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC
Q 011126 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 398 (493)
..++......+..+.|++.... .+......+.+..|+.+..+. +...+..|.++|.|+.|+|
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~---------------~F~s~~dsG~lqlWDlRqp~r---~~~k~~AH~GpV~c~nwhP 230 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGN---------------KFASIHDSGYLQLWDLRQPDR---CEKKLTAHNGPVLCLNWHP 230 (839)
T ss_pred cccccccchhhhceeeccCCCc---------------eEEEecCCceEEEeeccCchh---HHHHhhcccCceEEEeecC
Confidence 8888877777788888776633 344566777888898876654 4566789999999999999
Q ss_pred CC-eEEEEeCCCeEEEEECCCCc--EEEEecCCCcEEEEEEccCCCCEEEEEe--CCCeEEEEeCCCCeEE--EecCCCC
Q 011126 399 NG-FLLSSSADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVV--DYTDIRE 471 (493)
Q Consensus 399 ~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~~h~~~V~~v~fsp~d~~~l~sgs--~Dg~V~IWdl~~~~~~--~~~~~~~ 471 (493)
++ +||||+.|++|+|||+.+.+ .+.++....+|.+|.|-|.....|++++ .|-.|+|||++..-+- .+..|..
T Consensus 231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 88 99999999999999998654 4566667899999999996666777776 4789999999876443 5788999
Q ss_pred CeEEEEEccC-CCEEEEeecCC
Q 011126 472 IVSAVCYCPD-GKVRQNSACNF 492 (493)
Q Consensus 472 ~I~sv~~spd-G~~l~s~s~d~ 492 (493)
.++.++|... -..+.+++.|.
T Consensus 311 ~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 311 SVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred cccceeccCCCceeeEeecCcc
Confidence 9999999773 34555555553
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.85 E-value=1.9e-20 Score=176.79 Aligned_cols=222 Identities=18% Similarity=0.321 Sum_probs=168.1
Q ss_pred ceeeeecccccceec---cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126 230 AMARIIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (493)
Q Consensus 230 ~~~~~~~~~~~~~fs---p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (493)
.+.+|.+.+.++++. +....+++++.|.++++|.++.......... ..+||...|-++...++|..+++|+.|.
T Consensus 139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~---~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK---VCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh---HhcccccceeEEEecCCCCeEEeecccc
Confidence 345556666654443 3334699999999999999987665544333 2359999999999999999999999999
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
+|+||+... .....+....... .+... .........|+..+.|
T Consensus 216 ~lkiWs~~~-~~~~~~E~~s~~r--------------------rk~~~----------------~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 216 MLKIWSVET-DEEDELESSSNRR--------------------RKKQK----------------REKEGGTRTPLVTLEG 258 (423)
T ss_pred eeeecccCC-Cccccccccchhh--------------------hhhhh----------------hhhcccccCceEEecc
Confidence 999999322 1111111100000 00000 0000112467889999
Q ss_pred CCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC--eEE
Q 011126 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVV 464 (493)
Q Consensus 387 h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~--~~~ 464 (493)
|..+|.++.|++.+.+++++.|.+|+.||+.++.++..+.....++||..+| ..++|++|+.|..|++||.+++ .++
T Consensus 259 Ht~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 259 HTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred cccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCcee
Confidence 9999999999997799999999999999999999999999999999999999 9999999999999999999975 344
Q ss_pred --EecCCCCCeEEEEEccCCCEE-EEeecCC
Q 011126 465 --DYTDIREIVSAVCYCPDGKVR-QNSACNF 492 (493)
Q Consensus 465 --~~~~~~~~I~sv~~spdG~~l-~s~s~d~ 492 (493)
.+.+|.+-|.++.|+|...++ ++++.|+
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 589999999999999988765 5555554
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.2e-21 Score=182.79 Aligned_cols=258 Identities=19% Similarity=0.226 Sum_probs=173.9
Q ss_pred ccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeE
Q 011126 174 LQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHEL 250 (493)
Q Consensus 174 lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~l 250 (493)
|+-+.. |++||.++=+.+.. ||+..... + .+...++.+|...|.-+.|+||+++|
T Consensus 227 VWfl~FS~nGkyLAsaSkD~Tai-----iw~v~~d~---------~--------~kl~~tlvgh~~~V~yi~wSPDdryL 284 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDSTAI-----IWIVVYDV---------H--------FKLKKTLVGHSQPVSYIMWSPDDRYL 284 (519)
T ss_pred EEEEEEcCCCeeEeeccCCceEE-----EEEEecCc---------c--------eeeeeeeecccCceEEEEECCCCCeE
Confidence 444443 89999998887776 77754321 1 23344677888888889999999999
Q ss_pred EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc-CCCC
Q 011126 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ-DTDP 329 (493)
Q Consensus 251 asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~-~~~~ 329 (493)
++++.+..+++||+.++... ..+. .+|...+.+++|.|||..+++|+.|++|..||+.... ....+.. ...+
T Consensus 285 laCg~~e~~~lwDv~tgd~~--~~y~----~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v 357 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLR--HLYP----SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKV 357 (519)
T ss_pred EecCchHheeeccCCcchhh--hhcc----cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccccccccee
Confidence 99999999999999866532 2221 2356789999999999999999999999999985432 2222211 1223
Q ss_pred ceEEEeeCCCCceeee--------eccCc----c---ccceeeeecCCCceEEEcCCC-----ceeec-ccceEEEecCC
Q 011126 330 SCLYFTINHLSQLIPI--------DVDKE----K---IDKTKSLRKSSDLTCVVLPPK-----VFRLL-EKPLHEFQGHS 388 (493)
Q Consensus 330 ~~~~~~~~~~~~~~~~--------~~~~~----~---~~~~~~~~~s~~~~~~~~~~~-----~~~~~-~~~~~~~~~h~ 388 (493)
.+++++.++...+... +.... . ......+.-+.++..++.... .|++. .+.+..+.||.
T Consensus 358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk 437 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK 437 (519)
T ss_pred EEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc
Confidence 3444444433222111 11000 0 011222333344433333221 22222 23456677887
Q ss_pred CCEe--EEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 389 SEVL--DLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 389 ~~V~--~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
..-. .-+|...+ ++++|++|+.|+||+..+++++.++. |...|+||+|+|.+..+||+++.||+||||-+..
T Consensus 438 q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 438 QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 6433 33454433 99999999999999999999999996 9999999999999999999999999999998764
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.3e-19 Score=165.40 Aligned_cols=237 Identities=18% Similarity=0.222 Sum_probs=177.1
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCcccccc-------------------------------------cccc
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-------------------------------------SLYT 276 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~-------------------------------------~~~~ 276 (493)
....+.++.|+++|.++++++.|.+++|||......... .-..
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 346677899999999999999999999999865432110 0011
Q ss_pred ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (493)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (493)
.+.|.||...|+.|+.+|-+..+++++.|++||+||++..++...+.....+ ..++ +..+.++++...
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~Af--Dp~GLifA~~~~-------- 160 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAF--DPEGLIFALANG-------- 160 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeE--CCCCcEEEEecC--------
Confidence 1347899999999999998899999999999999999988776666554332 2222 222333333222
Q ss_pred eeecCCCceEEEcCCCceeecccceEEEe---cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CC---
Q 011126 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HN--- 428 (493)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~--- 428 (493)
...+.+++.+.+.. .|..++. +.....+.|.|+|+| +|+.+...+.+++.|.-.|..+..+. +.
T Consensus 161 ------~~~IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 161 ------SELIKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred ------CCeEEEEEecccCC--CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 22455555544432 3333333 336688999999999 88888999999999999999998886 22
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecC-CCCCeEEEEEccCCCEEEEeecC
Q 011126 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD-IREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~-~~~~I~sv~~spdG~~l~s~s~d 491 (493)
..-...+|.| +++++++|+.||+|.+|+++++..+ .+.+ +..++..+.|+|.-..+++++..
T Consensus 233 ~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~ 296 (311)
T KOG1446|consen 233 NLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN 296 (311)
T ss_pred CcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCce
Confidence 2225789999 9999999999999999999999877 4655 68899999999999888888753
No 82
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.6e-19 Score=166.18 Aligned_cols=235 Identities=17% Similarity=0.253 Sum_probs=170.9
Q ss_pred ecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 235 IDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 235 ~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
.|.+.+++|+| ...++++|+.|++||+|+++.... ...+....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 46778899999 555666899999999999986421 112345679999999999999999999999999999999
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc-------------eee----
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-------------FRL---- 376 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-------------~~~---- 376 (493)
.++ ++..+..|..++.++.|........+ .+++-|.++..|+.+. +..
T Consensus 102 ~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl--------------~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~ 166 (347)
T KOG0647|consen 102 ASG-QVSQVAAHDAPVKTCHWVPGMNYQCL--------------VTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY 166 (347)
T ss_pred cCC-CeeeeeecccceeEEEEecCCCccee--------------EecccccceeecccCCCCeeeeeeccceeeehhccC
Confidence 999 56677788888888877666543222 2222233333333221 100
Q ss_pred -------c---------ccceEEEecC----CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--EEec-CC----
Q 011126 377 -------L---------EKPLHEFQGH----SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVFS-HN---- 428 (493)
Q Consensus 377 -------~---------~~~~~~~~~h----~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--~~~~-h~---- 428 (493)
. +.+...++.+ .-.+.||+..+++ ..+.|+-.|.+-|..+..+... .+|+ |.
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC
Confidence 0 0111122222 2357899988887 7799999999999998876332 2333 33
Q ss_pred -----CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126 429 -----NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 429 -----~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
-.|++|+|+| ....|+|.+.||++.+||-.....+ ....|..+|++.+|+.+|.+++-+.+
T Consensus 247 ~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred CCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 2588999999 7788999999999999999876555 56889999999999999999986654
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.4e-20 Score=179.55 Aligned_cols=234 Identities=18% Similarity=0.210 Sum_probs=187.8
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+....+.+.+++|+|...+=.+-...-+|.||+..... ..+.+...+..|+++.|..||++||+|...|.|+|
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKV 94 (487)
T ss_pred cccccCcceeEecCCCCCCceEEecccEEEEEecchhh-------hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEE
Confidence 33445677789999987765555556789999876433 22234456788999999999999999999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
+|+.+...+..+..+..++....|++.... ....++.+..+.+|+...-. ....+.+|+..
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t---------------~l~s~sDd~v~k~~d~s~a~----v~~~l~~htDY 155 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNT---------------MLVSGSDDKVVKYWDLSTAY----VQAELSGHTDY 155 (487)
T ss_pred eccccHHHHHHHhhccCceeEEEecccCCe---------------EEEecCCCceEEEEEcCCcE----EEEEecCCcce
Confidence 998777778888888888888888776533 33455666666666665433 14478899999
Q ss_pred EeEEEEeCCC--eEEEEeCCCeEEEEECCCC-cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC-CeEEE-
Q 011126 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVD- 465 (493)
Q Consensus 391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~-~~~~~- 465 (493)
|.|.+|+|.+ +++||+.||+||+||+++. ..+..+.|..+|-.+.+-| .|..||+++.. .|+|||+-+ ++.+.
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgGn-~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGGN-SVKVWDLTTGGQLLTS 233 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCCC-eEEEEEecCCceehhh
Confidence 9999999976 8999999999999999987 7888899999999999999 88999998754 699999995 45554
Q ss_pred ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 466 YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 466 ~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
...|...||++++..++..|++++=|.
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred hhcccceEEEEEeecCCceEeeccccc
Confidence 455999999999999999999998663
No 84
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=168.24 Aligned_cols=243 Identities=14% Similarity=0.194 Sum_probs=174.4
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccc----------cc----------------------ccccc
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE----------LS----------------------SLYTG 277 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~----------~~----------------------~~~~~ 277 (493)
.+.+|.+.+.+++|+.+|++||+.+.|+.|+||+++.-... +. .++..
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 47788999999999999999999999999999998652110 00 00000
Q ss_pred e--------------------eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeC
Q 011126 278 Q--------------------EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337 (493)
Q Consensus 278 ~--------------------~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~ 337 (493)
. --..|+-.|..+-...++.+|++++.|..|.+|++. |+.+..+..........+.+++
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 0 012345556666667788899999999999999997 8989888888777776777666
Q ss_pred CCCceeeeeccCccccceeeeecCCCceEEEcCC----CceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEE
Q 011126 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP----KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVR 412 (493)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~ 412 (493)
+.... ...+..+ +.+|.+ +..-..-+.+..++||...|+.++|+|+. .++|.+.||+++
T Consensus 240 GRFia-~~gFTpD---------------VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 240 GRFIA-VSGFTPD---------------VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR 303 (420)
T ss_pred CcEEE-EecCCCC---------------ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence 63221 1111111 112211 11111124467789999999999999998 999999999999
Q ss_pred EEECCC-------CcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCCeEEEEE
Q 011126 413 LWQVGI-------DRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCY 478 (493)
Q Consensus 413 lWd~~~-------~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~ 478 (493)
|||+.- ...++++. ..+....+.++| .++.||.. ....++++..++++... ...|...|++|+|
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~ 381 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISY 381 (420)
T ss_pred EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEe
Confidence 999853 22333331 233444899999 88888775 45579999999988774 4568889999999
Q ss_pred ccCCCEEEEeecC
Q 011126 479 CPDGKVRQNSACN 491 (493)
Q Consensus 479 spdG~~l~s~s~d 491 (493)
+|+|+++++.|..
T Consensus 382 ~~~g~~~atcGdr 394 (420)
T KOG2096|consen 382 SSDGKYIATCGDR 394 (420)
T ss_pred cCCCcEEeeecce
Confidence 9999999998754
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=7.2e-20 Score=190.44 Aligned_cols=225 Identities=23% Similarity=0.375 Sum_probs=186.7
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+.+|.+.+.++++...+.+|++|+.|.+++|||+.+.. +...+.+|++.|.+|... +.++++|+.|.+|++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV 315 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------EEEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence 66788888889998888999999999999999987554 555789999999999885 557889999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
|++.++..+..+..+...+.++... ....+.++.++.+.+|+... .+++..+.+|...
T Consensus 316 W~v~n~~~l~l~~~h~~~V~~v~~~------------------~~~lvsgs~d~~v~VW~~~~----~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 316 WDVTNGACLNLLRGHTGPVNCVQLD------------------EPLLVSGSYDGTVKVWDPRT----GKCLKSLSGHTGR 373 (537)
T ss_pred EeccCcceEEEeccccccEEEEEec------------------CCEEEEEecCceEEEEEhhh----ceeeeeecCCcce
Confidence 9999999998888776666665543 23346778888999998873 5668999999999
Q ss_pred EeEEEEeCCCeEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec
Q 011126 391 VLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT 467 (493)
Q Consensus 391 V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~ 467 (493)
|.++.+.+..++++|+.|++|++||+.+. +|+.++. |...|..+.+ .+++|++++.|++|++||..+++.+. +.
T Consensus 374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred EEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeec
Confidence 99999887569999999999999999999 9999987 7788877776 56899999999999999999998885 44
Q ss_pred C-CCCCeEEEEEccCCCEEEEeecC
Q 011126 468 D-IREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 468 ~-~~~~I~sv~~spdG~~l~s~s~d 491 (493)
. +...|+++++. ...+++++.+
T Consensus 451 ~~~~~~v~~l~~~--~~~il~s~~~ 473 (537)
T KOG0274|consen 451 GRHVGGVSALALG--KEEILCSSDD 473 (537)
T ss_pred cCCcccEEEeecC--cceEEEEecC
Confidence 4 55888888876 3345555443
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=2e-19 Score=172.43 Aligned_cols=238 Identities=17% Similarity=0.239 Sum_probs=195.4
Q ss_pred ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (493)
-+..+.+|...+.++.++|+...+++++.|..|+||....... ......|..+|+.+..+|.|.||++++.||
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-------PTSSRPHEEPVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-------ccccccccccceeeeeccCCcEEEEecCCc
Confidence 3445778888899999999999999999999999999875442 224678999999999999999999999999
Q ss_pred cEEEEecCCCeeeeeeeccC--CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 307 TVRVWKVIEHERLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
+..+.|+.++..+....... ....+..|.+++ ..+..+..++.+.+|+.+... .+..|
T Consensus 326 ~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----------------Lifgtgt~d~~vkiwdlks~~----~~a~F 385 (506)
T KOG0289|consen 326 TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----------------LIFGTGTPDGVVKIWDLKSQT----NVAKF 385 (506)
T ss_pred eEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----------------eEEeccCCCceEEEEEcCCcc----ccccC
Confidence 99999999998876655432 223344444333 344567788888888877543 46789
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
.+|.++|..|+|+.+| +|++++.|+.|++||++..+..+++. ....|.++.|.+ .|.||+.++.|=+|++++-.+.
T Consensus 386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEEEEecccc
Confidence 9999999999999999 99999999999999999988888886 334699999999 9999999998888888876655
Q ss_pred e---EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 462 Q---VVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 462 ~---~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+ +..+..|.+..+.+.|....+++++++-|.
T Consensus 465 ~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 465 SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred cceeeehhhhcccccceeeecccceEEeeccchh
Confidence 3 335778888999999999999999988763
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.6e-20 Score=168.90 Aligned_cols=204 Identities=20% Similarity=0.312 Sum_probs=162.3
Q ss_pred ceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCc
Q 011126 230 AMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT 307 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~ 307 (493)
..+.|...+.++.+++.. ..+++++-|++||+|+....+ ..+++.+|..-|+..+|+| .++++++++.|++
T Consensus 99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-------ceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 344455556667776654 567788999999999976332 3457899999999999999 6789999999999
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
+++||++.......+..+...+.++.|+ +.......+++.+..+..|+.+..+ .|+..+.+|
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~---------------ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh 233 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWS---------------KYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGH 233 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeeccc---------------ccCCcEEEecCCCceEEEEehhhcc---ccceeecCC
Confidence 9999997655444455555444443333 3334455678889999999998766 578899999
Q ss_pred CCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 388 ~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
.-.|..++|||.. +|++++.|-++||||... ..++.+.. |+..|..+.|++.++.++|+++.|+.++||+.
T Consensus 234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999999987 999999999999999874 44555554 88999999999999999999999999999984
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=187.82 Aligned_cols=222 Identities=23% Similarity=0.353 Sum_probs=181.6
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
..+.+..|+ +.++++++.+++|++|+......... .+.+|.+.|++++|..-+.+|++|+.|.+++|||+.+
T Consensus 209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred chhhhheee--cCeEEecCCCceeEEeecccceEEEe------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 344445666 67899999999999999875543322 3789999999999987788999999999999999999
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
+++...+..+...+.++.. .......++.|.++.+|+... ...++.+.+|.++|.++.
T Consensus 281 g~C~~~l~gh~stv~~~~~------------------~~~~~~sgs~D~tVkVW~v~n----~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI------------------DPFLLVSGSRDNTVKVWDVTN----GACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred CcEEEEecCCCceEEEEEc------------------cCceEeeccCCceEEEEeccC----cceEEEeccccccEEEEE
Confidence 9999999877665555443 223334578889999998873 345777888999999999
Q ss_pred EeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC-eEE-EecCCCCC
Q 011126 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-DYTDIREI 472 (493)
Q Consensus 396 ~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~-~~~-~~~~~~~~ 472 (493)
.+ .+++++|+.|++|++||+.+++|++.+. |...|+++.+.+ . .++++|+.|++|++||+.+. +++ .+..|...
T Consensus 339 ~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~ 415 (537)
T KOG0274|consen 339 LD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL 415 (537)
T ss_pred ec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence 98 3499999999999999999999999997 999999999866 3 99999999999999999999 766 46777777
Q ss_pred eEEEEEccCCCEEEEeecCC
Q 011126 473 VSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 473 I~sv~~spdG~~l~s~s~d~ 492 (493)
++. ....++.|++++.|.
T Consensus 416 v~~--l~~~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 416 VSS--LLLRDNFLVSSSADG 433 (537)
T ss_pred ccc--cccccceeEeccccc
Confidence 744 445677888887764
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=1.2e-19 Score=175.42 Aligned_cols=244 Identities=21% Similarity=0.303 Sum_probs=193.2
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc----------ccccceee-ecccCCEEEEEEccCC
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------SLYTGQEF-LAHEGSILTMKFSLDG 296 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~----------~~~~~~~l-~~H~~~I~~l~fspdg 296 (493)
+..+..|.-.+.+++++|++.+..+++.+++|.=|++........ .....+.- .+|...|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 344556777778899999999999999999999999876553210 11111111 3899999999999999
Q ss_pred CEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (493)
Q Consensus 297 ~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (493)
+|||+|+.|..|.||+..+.+.++.+..+...+.++.|..+.. ..+..+.+..+.+|......+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~----------------~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS----------------ELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc----------------ceeeeecCCceEEEehhHhHH
Confidence 9999999999999999999999999998888888777755442 234556677788887765443
Q ss_pred cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (493)
Q Consensus 377 ~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I 455 (493)
+.++.||...|.+|....-+ .+..|+.|++++||++.....+....+.+.+-|++|- +...|++|+.||.|.+
T Consensus 279 ----vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 279 ----VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIAL 352 (479)
T ss_pred ----HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEE
Confidence 56788999999999887777 4445559999999999666666555688999999997 5788999999999999
Q ss_pred EeCCCCeEEEe--cC-----------CCCCeEEEEEccCCCEEEEeecCCC
Q 011126 456 WEVRRCQVVDY--TD-----------IREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 456 Wdl~~~~~~~~--~~-----------~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
|++.+.+++.. .. ++..|++++..|...++++|++++|
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~ 403 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC 403 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc
Confidence 99998877631 11 1227999999999999999998876
No 90
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.1e-19 Score=174.78 Aligned_cols=258 Identities=17% Similarity=0.202 Sum_probs=186.0
Q ss_pred ccCCCcccccccccCCCCCCccccccCCccccccccchhh-hhhhhccccccccCceeeeecccccceeccCC-CeEEee
Q 011126 176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVD-AKRKVKRGWLKKLGAMARIIDRHGSATLKPGD-HELTLG 253 (493)
Q Consensus 176 ~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~-~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g-~~lasg 253 (493)
.=+.|+++|+..|++.+- ||.|--+......-..+ ...++++...++.....+|.+.+-.++|...- +.||+|
T Consensus 188 ~~~~gNyvAiGtmdp~Ie-----IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg 262 (463)
T KOG0270|consen 188 SGGAGNYVAIGTMDPEIE-----IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG 262 (463)
T ss_pred CCCCcceEEEeccCceeE-----EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec
Confidence 344589999999999988 99986665543333323 22223333333555677888888888887765 578999
Q ss_pred ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeee-eeeeccCCCCce
Q 011126 254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERL-DGFDVQDTDPSC 331 (493)
Q Consensus 254 s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~-~~~~~~~~~~~~ 331 (493)
+.|.+|++||+.+.+ +.+++..|.+.|.+++|+| ...+|++|+.|++|++.|.+..... ..++. ...+-.
T Consensus 263 saD~TV~lWD~~~g~-------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEk 334 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGK-------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEK 334 (463)
T ss_pred CCCceEEEEEcCCCC-------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-ccceEE
Confidence 999999999998655 3445778999999999999 5679999999999999999742211 11111 111222
Q ss_pred EEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCC
Q 011126 332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADK 409 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg 409 (493)
+.|.+.. ...++.+..++.++.++.+.. .+++.+++.|.+.|.+|++++.. +|+|++.|+
T Consensus 335 v~w~~~s---------------e~~f~~~tddG~v~~~D~R~~---~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 335 VAWDPHS---------------ENSFFVSTDDGTVYYFDIRNP---GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred EEecCCC---------------ceeEEEecCCceEEeeecCCC---CCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 2332222 123345567778888777654 38899999999999999999875 999999999
Q ss_pred eEEEEECCCCcEEEEecC---CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 410 TVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~~~h---~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
+|+||++.......+..| -+...|.++.|....+++.|+..+.++|||+.+...+
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999999976555433332 2447788999966778889999999999999887654
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.5e-19 Score=180.40 Aligned_cols=219 Identities=21% Similarity=0.300 Sum_probs=176.3
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
+.|+ ..+.||+| ....|.+|+....... . ...-+...|+++.|+++|.+||+|..+|.|.|||+.+.+.+.
T Consensus 183 ldWs-s~n~laVa-lg~~vylW~~~s~~v~--~-----l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 183 LDWS-SANVLAVA-LGQSVYLWSASSGSVT--E-----LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hhcc-cCCeEEEE-ecceEEEEecCCCceE--E-----eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence 6677 44456666 4457999998755411 1 122247899999999999999999999999999999999888
Q ss_pred eeec-cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 321 GFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 321 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
.+.. +...+.++.|. ......++.++.++.++.+....... .+.+|...|..++|+++
T Consensus 254 ~~~~~h~~rvg~laW~------------------~~~lssGsr~~~I~~~dvR~~~~~~~---~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN------------------SSVLSSGSRDGKILNHDVRISQHVVS---TLQGHRQEVCGLKWSPD 312 (484)
T ss_pred cccCCcCceeEEEecc------------------CceEEEecCCCcEEEEEEecchhhhh---hhhcccceeeeeEECCC
Confidence 8887 55555555554 12234667777777777665443222 37889999999999999
Q ss_pred C-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEe--CCCeEEEEeCCCCeEEEecCCCCCeEE
Q 011126 400 G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTDIREIVSA 475 (493)
Q Consensus 400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs--~Dg~V~IWdl~~~~~~~~~~~~~~I~s 475 (493)
+ +||+|+.|+.+.|||.....++..+ .|.+.|..++|+|....+||+|+ .|+.|++||..+++.+........|.+
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs 392 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS 392 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee
Confidence 9 9999999999999999777766666 49999999999999899999975 599999999999999999999999999
Q ss_pred EEEccCCCEEEEee
Q 011126 476 VCYCPDGKVRQNSA 489 (493)
Q Consensus 476 v~~spdG~~l~s~s 489 (493)
|.|++..+-|+++.
T Consensus 393 L~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 393 LIWSKKYKELLSTH 406 (484)
T ss_pred EEEcCCCCEEEEec
Confidence 99999998777654
No 92
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.7e-18 Score=159.68 Aligned_cols=244 Identities=18% Similarity=0.265 Sum_probs=174.9
Q ss_pred eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcEE
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVR 309 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~ 309 (493)
++|.|.+.++.|.+.|+.+|+++.|++|+|||..+... .+.+....++|.+.|+.|.|.+ -|+.+|+++.|++++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 45678888999999999999999999999999754432 4445567899999999999976 699999999999999
Q ss_pred EEecCC---------CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCC------Cce
Q 011126 310 VWKVIE---------HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP------KVF 374 (493)
Q Consensus 310 iWdl~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~------~~~ 374 (493)
||.-.. .....++......+..+.|.+.+.+. .....+.++.+.++.. ..|
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL--------------klA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL--------------KLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcce--------------EEEEeccCcEEEEEecCCccccccc
Confidence 997521 11223333344445555555555432 3344555666666533 222
Q ss_pred eeccc---ceEEEecCCCCEeEEEEeCCC----eEEEEeCC-----CeEEEEECCCCc--EEEE--e-cCCCcEEEEEEc
Q 011126 375 RLLEK---PLHEFQGHSSEVLDLSWSKNG----FLLSSSAD-----KTVRLWQVGIDR--CLRV--F-SHNNYVTSVAFN 437 (493)
Q Consensus 375 ~~~~~---~~~~~~~h~~~V~~l~~sp~g----~l~sgs~D-----g~V~lWd~~~~~--~~~~--~-~h~~~V~~v~fs 437 (493)
.+..+ .+.....+.....|+.|+|.. +|+.|+.+ +.+.||...... .++. + .|+++|+.|+|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 22111 111223467788999999864 77777765 478999765432 2222 2 399999999999
Q ss_pred cCCC---CEEEEEeCCCeEEEEeCCCC--------------------eEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 438 PVDD---NYFISGSIDGKVRIWEVRRC--------------------QVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 438 p~d~---~~l~sgs~Dg~V~IWdl~~~--------------------~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
|.-| .+||+++.|| |+||.+... +.+ .+.+|++.|+.++|+-.|..|+++|.|+|
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~ 311 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC 311 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence 9544 3789999999 999999731 112 36789999999999999999999999987
No 93
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.83 E-value=9.7e-19 Score=194.34 Aligned_cols=222 Identities=17% Similarity=0.232 Sum_probs=162.3
Q ss_pred CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEe
Q 011126 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335 (493)
Q Consensus 256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~ 335 (493)
+|.+++|+....... .......+.+|.+.|.+++|+|+|++||+|+.|++|+||++........ ..+ .....+
T Consensus 457 ~gl~~~~~~~~~~~~--~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~---~~~~~~- 529 (793)
T PLN00181 457 EGLCKYLSFSKLRVK--ADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIH---YPVVEL- 529 (793)
T ss_pred hhhhhhhcccceEEE--EeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-ccc---cceEEe-
Confidence 567888887644321 1122235667999999999999999999999999999999754210000 000 000000
Q ss_pred eCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC-CC-eEEEEeCCCeEEE
Q 011126 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRL 413 (493)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~l 413 (493)
.....+..+.+... .....+.++.++.+.+|+.... +.+..+.+|...|++++|+| ++ +|++|+.|++|++
T Consensus 530 -~~~~~v~~l~~~~~--~~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i 602 (793)
T PLN00181 530 -ASRSKLSGICWNSY--IKSQVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL 602 (793)
T ss_pred -cccCceeeEEeccC--CCCEEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEE
Confidence 11112222222111 1123456777889999987643 34677889999999999997 56 9999999999999
Q ss_pred EECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe--EEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 414 WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 414 Wd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~--~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
||++++.++..+.+...|.++.|++.++.+|++|+.||.|++||+++.+ ...+..|...|+++.|. ++.+|++++.|
T Consensus 603 Wd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 603 WSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred EECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence 9999999999888778899999976479999999999999999998765 33577899999999997 78899999877
Q ss_pred C
Q 011126 492 F 492 (493)
Q Consensus 492 ~ 492 (493)
.
T Consensus 682 ~ 682 (793)
T PLN00181 682 N 682 (793)
T ss_pred C
Confidence 5
No 94
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.83 E-value=3.9e-20 Score=179.61 Aligned_cols=222 Identities=17% Similarity=0.214 Sum_probs=164.9
Q ss_pred ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECC
Q 011126 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGED 305 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~D 305 (493)
.+.+..+|...|..++|+++|..+++++.|+.|++||++++.... .+. -...++|++|+|++ +.+++|+.|
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~-------~f~-~~~~~~cvkf~pd~~n~fl~G~sd 321 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS-------RFH-LDKVPTCVKFHPDNQNIFLVGGSD 321 (503)
T ss_pred eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE-------EEe-cCCCceeeecCCCCCcEEEEecCC
Confidence 345677888889999999999999999999999999998766322 121 23468999999988 788999999
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeecc--------Cccccc-------------------eeee
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVD--------KEKIDK-------------------TKSL 358 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-------------------~~~~ 358 (493)
+.|+.||+++++.++.+..+-..+..+.|...+...+...+.. ..-..+ ....
T Consensus 322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred CcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence 9999999999999998888877777777766654433322211 110000 0111
Q ss_pred ecCCCceEEEcCCCceeecccceEEEecCCC--CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEE
Q 011126 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSV 434 (493)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v 434 (493)
..+.+..+.++... ..........+.||.. .-..+.|||+| +|++|..||.+.+||.++.+.+..++ |...++.+
T Consensus 402 aQs~dN~i~ifs~~-~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v 480 (503)
T KOG0282|consen 402 AQSMDNYIAIFSTV-PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGV 480 (503)
T ss_pred hhccCceEEEEecc-cccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEE
Confidence 22223333333211 1111223445677754 45678899999 99999999999999999999998887 88999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEe
Q 011126 435 AFNPVDDNYFISGSIDGKVRIWE 457 (493)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~IWd 457 (493)
.|+|.....+|+|+.||.|++||
T Consensus 481 ~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EecCCCcceeEecccCceeEecC
Confidence 99998899999999999999996
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.82 E-value=2.4e-19 Score=173.25 Aligned_cols=213 Identities=19% Similarity=0.339 Sum_probs=172.8
Q ss_pred ceeeeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCc
Q 011126 230 AMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT 307 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~ 307 (493)
.+.+|.+....++|++... .|++|+.|++|.+||+.....+-........+.+|...|..++|++ +..++++++.|+.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 4555655455578887654 7889999999999999876665334445567899999999999999 6668899999999
Q ss_pred EEEEecC--CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 308 VRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 308 V~iWdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
+.|||++ +.+.......+...+.|+.|.+... ....+++.++++.+|+.+.... +++.+.
T Consensus 252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~---------------~ilAT~S~D~tV~LwDlRnL~~---~lh~~e 313 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE---------------FILATGSADKTVALWDLRNLNK---PLHTFE 313 (422)
T ss_pred EEEEEcCCCCCCCcccccccCCceeEEEeCCCCC---------------ceEEeccCCCcEEEeechhccc---Cceecc
Confidence 9999999 4555666777778888888876653 3345778899999999987654 799999
Q ss_pred cCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc--------------EEEEe-cCCCcEEEEEEccCCCCEEEEEe
Q 011126 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR--------------CLRVF-SHNNYVTSVAFNPVDDNYFISGS 448 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~--------------~~~~~-~h~~~V~~v~fsp~d~~~l~sgs 448 (493)
+|...|.+|.|+|+. .|++++.|+.+.|||+..-. .+.+. +|...|+.+.|+|...-.|++.+
T Consensus 314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 999999999999987 99999999999999986321 12222 38899999999997778899999
Q ss_pred CCCeEEEEeCCC
Q 011126 449 IDGKVRIWEVRR 460 (493)
Q Consensus 449 ~Dg~V~IWdl~~ 460 (493)
.|+.+.||.+..
T Consensus 394 eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 394 EDNILQIWQMAE 405 (422)
T ss_pred CCceEEEeeccc
Confidence 999999999863
No 96
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=5.6e-19 Score=161.92 Aligned_cols=213 Identities=20% Similarity=0.300 Sum_probs=158.8
Q ss_pred eeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccc-ccc-----c--cceeeecccCCEEEEEEcc-CCCEEE
Q 011126 231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSREL-SSL-----Y--TGQEFLAHEGSILTMKFSL-DGQYLA 300 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~-~~~-----~--~~~~l~~H~~~I~~l~fsp-dg~~La 300 (493)
...|...++++.+.+ .|+++++|+.||.|.|||++...... +.+ . ..+.-.+|+-.|..+.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 344667778888876 57899999999999999998654211 111 0 1122357888999999999 666888
Q ss_pred EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (493)
+++.|.+++|||..+-+....++.+... ..-+ +.+..........+..+..+.+.+.... ..
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~V-Ysha-------------mSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~ 180 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKV-YSHA-------------MSPMAMSHCLIAAGTRDVQVRLCDIASG----SF 180 (397)
T ss_pred cccccceEEEeecccceeeEEeecCcee-ehhh-------------cChhhhcceEEEEecCCCcEEEEeccCC----cc
Confidence 9999999999999998887777665431 1111 1112222333445566666666666543 34
Q ss_pred eEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC-cEEEEe---------------cCCCcEEEEEEccCCCC
Q 011126 381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVF---------------SHNNYVTSVAFNPVDDN 442 (493)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~-~~~~~~---------------~h~~~V~~v~fsp~d~~ 442 (493)
.+.+.||.+.|.++.|+|.. .|++|+.||.|++||++.. .|..++ .|.+.|+.++|.. ++.
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~ 259 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DAR 259 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cch
Confidence 68899999999999999987 8999999999999999754 343333 2778999999999 999
Q ss_pred EEEEEeCCCeEEEEeCCCCe
Q 011126 443 YFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 443 ~l~sgs~Dg~V~IWdl~~~~ 462 (493)
++++++.|.++++|+...|+
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred hhhhccCccceEEeecccCc
Confidence 99999999999999998764
No 97
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.9e-19 Score=169.96 Aligned_cols=202 Identities=18% Similarity=0.306 Sum_probs=157.2
Q ss_pred ccccccCceeeeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEE
Q 011126 223 GWLKKLGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLA 300 (493)
Q Consensus 223 ~w~~~~~~~~~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~La 300 (493)
.-.+.+.+..+|...-..+.|+|-.. .|++|..-+.|++|....+...... +.|.+|+..|-.|+|||. ...|+
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~----~Pf~gH~~SVEDLqWSptE~~vfa 274 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ----RPFTGHTKSVEDLQWSPTEDGVFA 274 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC----ccccccccchhhhccCCccCceEE
Confidence 33455666777777777799999443 4888888899999998876655432 246789999999999995 45899
Q ss_pred EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (493)
||+-||+|+|||++.+... +
T Consensus 275 ScS~DgsIrIWDiRs~~~~------------------------------------------------------------~ 294 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKK------------------------------------------------------------A 294 (440)
T ss_pred eeecCceEEEEEecCCCcc------------------------------------------------------------c
Confidence 9999999999999876421 1
Q ss_pred eEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC---CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (493)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~---~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I 455 (493)
....+.|.+.|+.|.|+..- +||+|+.||+++|||++. ++++..|+ |..+|++|.|+|.+...|++++.|..|.|
T Consensus 295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 12236799999999999887 999999999999999974 56778887 99999999999988889999999999999
Q ss_pred EeCCCCe-------------------EEEecCCCCCeEEEEEccCCCEEEEe
Q 011126 456 WEVRRCQ-------------------VVDYTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 456 Wdl~~~~-------------------~~~~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
||+.--. ++........|..+.|+++-..++++
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence 9996211 11122233457788999986654443
No 98
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.82 E-value=7.3e-19 Score=159.26 Aligned_cols=248 Identities=16% Similarity=0.223 Sum_probs=183.7
Q ss_pred hhhhcccccc----ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEE
Q 011126 217 KRKVKRGWLK----KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF 292 (493)
Q Consensus 217 ~~~~k~~w~~----~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f 292 (493)
|......|.. +++.+.+|...+.++..+.+.+++++|+.|.++++||++.++.... -.-..+|..+.|
T Consensus 30 KD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~--------~k~~~~Vk~~~F 101 (327)
T KOG0643|consen 30 KDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLAT--------WKTNSPVKRVDF 101 (327)
T ss_pred CCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEE--------eecCCeeEEEee
Confidence 4444555654 6788899999999999999999999999999999999997764332 124578999999
Q ss_pred ccCCCEEEEEE-----CCCcEEEEecCCC-------eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeec
Q 011126 293 SLDGQYLASGG-----EDGTVRVWKVIEH-------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (493)
Q Consensus 293 spdg~~Lasgs-----~Dg~V~iWdl~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (493)
+++|++++.+. ..+.|.++|+... ++...+..+...+..+.|.+-. ...+.+
T Consensus 102 ~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~----------------~~ii~G 165 (327)
T KOG0643|consen 102 SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG----------------ETIIAG 165 (327)
T ss_pred ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC----------------CEEEEe
Confidence 99999887664 3567999998733 3344444444333333332222 234566
Q ss_pred CCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC
Q 011126 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV 439 (493)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~ 439 (493)
..++.+..|+.+... +.+.....|...|++|.++|+. +++|++.|.+-++||+.+-.+++++...-+|++.+++|
T Consensus 166 he~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP- 241 (327)
T KOG0643|consen 166 HEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISP- 241 (327)
T ss_pred cCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceeccc-
Confidence 777778777776432 1244456689999999999999 99999999999999999999999999999999999999
Q ss_pred CCCEEEEEe-CCC-eEEEEeCCCCe-------------EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 440 DDNYFISGS-IDG-KVRIWEVRRCQ-------------VVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 440 d~~~l~sgs-~Dg-~V~IWdl~~~~-------------~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
..+.++.|+ .+. -|.--+.+.++ +-...+|-++|++|+|+|+|+..++|+-|+
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence 555555554 432 13333333332 124678999999999999999999998764
No 99
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=1.3e-18 Score=176.75 Aligned_cols=255 Identities=17% Similarity=0.298 Sum_probs=186.5
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+|..+++.+.|...|..||+|+.|+.|.|||+-.....+ .+.||+..|+.+.|..+.++|++.+.|+.|+
T Consensus 102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~-------rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK 174 (888)
T KOG0306|consen 102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF-------RLRGHKDSITQALFLNGDSFLVSVSKDSMIK 174 (888)
T ss_pred eecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE-------EeecchHHHhHHhccCCCeEEEEeccCceEE
Confidence 456677888889999999999999999999999987544322 4789999999999998888999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEee------CCCCceeeeec--cCccc--------------------cceee----
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTI------NHLSQLIPIDV--DKEKI--------------------DKTKS---- 357 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~--------------------~~~~~---- 357 (493)
+||+.+..+..+.-.+....+.+.+.. .....+..+.. ..+.. .....
T Consensus 175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~ 254 (888)
T KOG0306|consen 175 FWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDF 254 (888)
T ss_pred EEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecC
Confidence 999999988887776666555544332 11111111111 00000 00000
Q ss_pred -------------------------------------------------------------------------e--ecCC
Q 011126 358 -------------------------------------------------------------------------L--RKSS 362 (493)
Q Consensus 358 -------------------------------------------------------------------------~--~~s~ 362 (493)
. ....
T Consensus 255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~ 334 (888)
T KOG0306|consen 255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT 334 (888)
T ss_pred cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence 0 0000
Q ss_pred CceEEEcCCCceee---c--cc--------ceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCC
Q 011126 363 DLTCVVLPPKVFRL---L--EK--------PLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN 429 (493)
Q Consensus 363 ~~~~~~~~~~~~~~---~--~~--------~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~ 429 (493)
...++......... . .+ ....+.||...|..++++.+..++..+..+.|+||+..+.+|++++...
T Consensus 335 ~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~- 413 (888)
T KOG0306|consen 335 ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG- 413 (888)
T ss_pred ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-
Confidence 00111111100000 0 00 1145678999999999999985555555688999999999999999765
Q ss_pred cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 430 ~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
++.+..|-| .++++++|...|.+.+||+....++. ...|.+.|++++.+||++.+++|+.|++
T Consensus 414 y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt 477 (888)
T KOG0306|consen 414 YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT 477 (888)
T ss_pred cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE
Confidence 999999999 99999999999999999999988874 6789999999999999999999999975
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=4.8e-19 Score=177.41 Aligned_cols=217 Identities=20% Similarity=0.338 Sum_probs=173.5
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEE-ccCCCEEEEEECCC
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF-SLDGQYLASGGEDG 306 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~Dg 306 (493)
+.++..|.+=++.+....+++.|++++.|-+|++|+..... ..+..++..|++-|.|+++ .++..++|+||-|+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR 140 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCc
Confidence 45666777777888888899999999999999999987553 1244467889999999999 77888999999999
Q ss_pred cEEEEecCCCee--eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 307 TVRVWKVIEHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 307 ~V~iWdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
.|.+||+.++.. +..+.... ...........++.++..... ...+.++....+.+|+++.. +.+..+
T Consensus 141 ~IflWDin~~~~~l~~s~n~~t----~~sl~sG~k~siYSLA~N~t~---t~ivsGgtek~lr~wDprt~----~kimkL 209 (735)
T KOG0308|consen 141 KIFLWDINTGTATLVASFNNVT----VNSLGSGPKDSIYSLAMNQTG---TIIVSGGTEKDLRLWDPRTC----KKIMKL 209 (735)
T ss_pred cEEEEEccCcchhhhhhccccc----cccCCCCCccceeeeecCCcc---eEEEecCcccceEEeccccc----cceeee
Confidence 999999998733 22222111 111111233344444444333 55667888888999988763 447778
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
.||+..|.+|..+++| .+++++.||+|+|||+...+|+.++. |...|+++..+| +-.++++|+.||.|..-|+++.
T Consensus 210 rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 210 RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCc
Confidence 8999999999999999 99999999999999999999999997 999999999999 9999999999999999999984
No 101
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=3.1e-19 Score=173.73 Aligned_cols=235 Identities=19% Similarity=0.279 Sum_probs=187.7
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccccc--cccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
|-..|-+++++...+++.+|++ |-|+|||+....... +.+ .+..-..-|.+++..|||+.|++|++-.+|.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL----dcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL----DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc----cccCcccceeeeEecCCCceEEeccccceeeee
Confidence 3344445888999999999976 679999997653221 111 123345679999999999999999999999999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
|+.................|.++..+.... ..+....++.+.+|+.... ..++.|.||...+
T Consensus 493 DLAapTprikaeltssapaCyALa~spDak--------------vcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAK--------------VCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGA 554 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccc--------------eeeeeccCCcEEEEEcccc----eeeecccCCCCCc
Confidence 998766544333333334444433333222 2245567788899988653 3478899999999
Q ss_pred eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC
Q 011126 392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR 470 (493)
Q Consensus 392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~ 470 (493)
.||..+++| .|.||+.|.+||.||++.++.+........|.++..+| .+.+|+.|-.++.|.|-.....+...+.-|.
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlhe 633 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHE 633 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccc
Confidence 999999999 99999999999999999999988888889999999999 9999999999999999999888888889999
Q ss_pred CCeEEEEEccCCCEEEEeecCC
Q 011126 471 EIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 471 ~~I~sv~~spdG~~l~s~s~d~ 492 (493)
..|.++.|.+.|+++++.|.|.
T Consensus 634 ScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred cEEEEEEecccCceeeecCchh
Confidence 9999999999999999988763
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=7e-19 Score=177.46 Aligned_cols=248 Identities=19% Similarity=0.266 Sum_probs=192.5
Q ss_pred ccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc---CCCEEEE
Q 011126 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLAS 301 (493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~Las 301 (493)
.+.....-.....+.+++++|+|++||+|..-|.++||++..... .-.+.+|...|.|+.|+. ..++||+
T Consensus 449 dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-------~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 449 DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-------TCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-------hhheecccceeEEEeecCchhhhHhhhh
Confidence 333334444556677899999999999999999999999874432 224689999999999986 3568999
Q ss_pred EECCCcEEEEecCCC-eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126 302 GGEDGTVRVWKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 302 gs~Dg~V~iWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (493)
++.|..|+|+|+... ..++++..|...+..+.|..++.+.-+ +....++...+....+..++.+..-
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M-iscGADksimFr~~qk~~~g~~f~r----------- 589 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM-ISCGADKSIMFRVNQKASSGRLFPR----------- 589 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE-EeccCchhhheehhccccCceeccc-----------
Confidence 999999999999644 456778888888888888877643222 1122222222222223333222111
Q ss_pred eEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (493)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I 455 (493)
++-......+++++..|+- ++++++.|+.|+||++.+++..+.|+ |.+....+...| .+.|||+.+.|.++.+
T Consensus 590 -~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~ 667 (1080)
T KOG1408|consen 590 -HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCF 667 (1080)
T ss_pred -cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEE
Confidence 1111124578899999987 99999999999999999999999996 777888999999 9999999999999999
Q ss_pred EeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 456 WEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 456 Wdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
+|..+++++ ...+|...|+.+.|.+|-+.|++.+.|.|
T Consensus 668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred EEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 999999988 58999999999999999999999999987
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.3e-20 Score=172.72 Aligned_cols=158 Identities=27% Similarity=0.502 Sum_probs=140.9
Q ss_pred ecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeec
Q 011126 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (493)
Q Consensus 281 ~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (493)
.+.++-+-|..|+|||+||++|+.||.|.+|+..+|+..+.++....
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq--------------------------------- 256 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ--------------------------------- 256 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------------------------------
Confidence 35567788999999999999999999999999999987655543211
Q ss_pred CCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEc
Q 011126 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFN 437 (493)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fs 437 (493)
..|--|..+|.|+.|+.+. .|++|+.||.|++|.+.++.|++.|. |...|+|+.|+
T Consensus 257 ---------------------d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS 315 (508)
T KOG0275|consen 257 ---------------------DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS 315 (508)
T ss_pred ---------------------cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence 1233468899999999998 99999999999999999999999996 99999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 438 PVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 438 p~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
. |+..+++++.|.+|||--++.|+.+ .+.+|..-|+.+.|++||..++++++|.+
T Consensus 316 r-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 316 R-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred c-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 9 9999999999999999999999988 58999999999999999999999998864
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.8e-18 Score=157.68 Aligned_cols=195 Identities=25% Similarity=0.368 Sum_probs=151.2
Q ss_pred cceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccce
Q 011126 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (493)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (493)
..+.+..-.+.|++|.|+++|.+|++++.|.+|+|||..+++++..+....-.+..+.|.......+......
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~------- 78 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE------- 78 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC-------
Confidence 3445556678899999999999999999999999999999999999998887777777766654433322211
Q ss_pred eeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE
Q 011126 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434 (493)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v 434 (493)
+..+...... ..+.++-|.||...|..|+.+|-+ .+++++.|++|++||++..+|...+.... -..+
T Consensus 79 -------d~tIryLsl~----dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~ 146 (311)
T KOG1446|consen 79 -------DDTIRYLSLH----DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIA 146 (311)
T ss_pred -------CCceEEEEee----cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-Ccce
Confidence 1112211111 135688899999999999999988 99999999999999999999988776333 3358
Q ss_pred EEccCCCCEEEEEeCCCeEEEEeCCCCe---EEE--ec-CCCCCeEEEEEccCCCEEEEeec
Q 011126 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQ---VVD--YT-DIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~IWdl~~~~---~~~--~~-~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+|.| .|-+||++...+.|++||++.-. ... +. ......+.|.|+|||++++.+..
T Consensus 147 AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 147 AFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred eECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence 9999 99999999988899999998532 222 22 44567899999999999887764
No 105
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=5.3e-18 Score=157.02 Aligned_cols=224 Identities=21% Similarity=0.305 Sum_probs=172.9
Q ss_pred eEEeeecCCeEEEEECCCcccccc-----ccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeee
Q 011126 249 ELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (493)
Q Consensus 249 ~lasgs~dg~V~vwd~~~~~~~~~-----~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~ 323 (493)
.|++|+....|.-+++........ .+.+.-.+.+|.++|++++.+ +.|+|+|+.|-+|+|||+.+...+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 367788877777777665441111 112222468999999999995 9999999999999999999999888888
Q ss_pred ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE
Q 011126 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL 402 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l 402 (493)
.+...++++.|.+.... ...+.++.++.+.+|+.+.|.. +..+++|.+.|+.|+.+|.+ +-
T Consensus 81 ~HagsitaL~F~~~~S~--------------shLlS~sdDG~i~iw~~~~W~~----~~slK~H~~~Vt~lsiHPS~KLA 142 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSK--------------SHLLSGSDDGHIIIWRVGSWEL----LKSLKAHKGQVTDLSIHPSGKLA 142 (362)
T ss_pred ccccceEEEEecCCcch--------------hheeeecCCCcEEEEEcCCeEE----eeeecccccccceeEecCCCceE
Confidence 88877777776554321 1456788999999999999855 88999999999999999999 77
Q ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC--------------------------------------CCCEE
Q 011126 403 LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--------------------------------------DDNYF 444 (493)
Q Consensus 403 ~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~--------------------------------------d~~~l 444 (493)
++.+.|+.+++|++-.++.-.........+.|.|+|. ++.+|
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L 222 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSEL 222 (362)
T ss_pred EEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceE
Confidence 8899999999999876654333332222222333331 67889
Q ss_pred EEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEE--ccCCCEEEEeecCC
Q 011126 445 ISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY--CPDGKVRQNSACNF 492 (493)
Q Consensus 445 ~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~--spdG~~l~s~s~d~ 492 (493)
++|+.|+.|++||..+..+. .+..|...|.++.+ .|++.+|+++++|+
T Consensus 223 ~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 223 LVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred EEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence 99999999999999987666 58899999999983 67899999999885
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.80 E-value=2.3e-19 Score=171.23 Aligned_cols=235 Identities=17% Similarity=0.219 Sum_probs=189.8
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+|...++.+.|-++...|++|+.|..|++|++.....+ ...++.+..++|+.+.|.++++++++++.|+.++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-----~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-----LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-----hhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 35667778888999999999999999999999998765533 3346778889999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+|++...+...++..|...+.++.+...+.. .+.++.+..+..|+.........++ ...
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~----------------vVsgs~DRtiK~WDl~k~~C~kt~l-----~~S 303 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR----------------VVSGSADRTIKLWDLQKAYCSKTVL-----PGS 303 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccc----------------eeeccccchhhhhhhhhhheecccc-----ccc
Confidence 9999999999999998887777766444422 3466777777777765433222211 234
Q ss_pred CEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe---
Q 011126 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--- 466 (493)
Q Consensus 390 ~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--- 466 (493)
.+.+|..++. .+++|-.|++||+||+++..+.......+.|+++..++ ++.-|.+++.|.++.+.|+++.++...
T Consensus 304 ~cnDI~~~~~-~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 304 QCNDIVCSIS-DVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred cccceEecce-eeeecccccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeec
Confidence 5566666522 78899999999999999999999999888999999999 999999999999999999999887642
Q ss_pred --cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 467 --TDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 467 --~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.......+.++|+|++.|+++|++|.
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dg 409 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADG 409 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCC
Confidence 12234589999999999999999985
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.2e-18 Score=161.03 Aligned_cols=236 Identities=15% Similarity=0.191 Sum_probs=187.5
Q ss_pred ccCceeeeecccccceeccCCCeEEeeecCCeEEEEEC------CCccc--------cc---------------c----c
Q 011126 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPV------KKQSR--------EL---------------S----S 273 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~------~~~~~--------~~---------------~----~ 273 (493)
.+..+++|...+++++|++.+.++++++.|++..||.+ .+... +. . .
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 45568899999999999999999999999999999973 11000 00 0 0
Q ss_pred cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccc
Q 011126 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (493)
Q Consensus 274 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (493)
..+.-.+.+|.+.|.+..|-..|+.+++++.|.+..+||+.++..+..+..+......+...+.
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt---------------- 325 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT---------------- 325 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc----------------
Confidence 1112357899999999999999999999999999999999999999888877665443322211
Q ss_pred ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCC-CcEEEEecCCCcEE
Q 011126 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVT 432 (493)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~-~~~~~~~~h~~~V~ 432 (493)
....+..+.+.+..+|+.+. .-..+..|.||...|+++.|..+..+++|+.|.+|+|||++. ..++.++....+++
T Consensus 326 QrLVvTsSrDtTFRLWDFRe---aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N 402 (481)
T KOG0300|consen 326 QRLVVTSSRDTTFRLWDFRE---AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN 402 (481)
T ss_pred ceEEEEeccCceeEeccchh---hcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence 12234566777788887652 223467899999999999999988999999999999999986 45788999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-----ecCCCCCeEEEEEccCC
Q 011126 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-----YTDIREIVSAVCYCPDG 482 (493)
Q Consensus 433 ~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-----~~~~~~~I~sv~~spdG 482 (493)
.++.+. .+.+|+.--.+..|++||+...++.. -.+|..+|++++|..+.
T Consensus 403 Rvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 403 RVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred eeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 999998 77788888888999999999877654 35788999999997654
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.80 E-value=4.2e-18 Score=171.91 Aligned_cols=215 Identities=20% Similarity=0.304 Sum_probs=169.0
Q ss_pred ceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeee
Q 011126 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (493)
Q Consensus 241 ~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~ 319 (493)
+++.+ ++-.+++|+.|+.|.+|...... +..++.+|+..|.++....++. |+||+.|.+++||.+. ++.
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~ 133 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAE-------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELV 133 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCC-------chhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhh
Confidence 55554 44569999999999999876433 4446899999999999888887 9999999999999764 344
Q ss_pred eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
..+..|...++.+...+. ...++++.|..+.+|.. .+.+.+|.||..-|..+++-++
T Consensus 134 ~~l~gH~asVWAv~~l~e-----------------~~~vTgsaDKtIklWk~------~~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 134 YSLQGHTASVWAVASLPE-----------------NTYVTGSADKTIKLWKG------GTLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred cccCCcchheeeeeecCC-----------------CcEEeccCcceeeeccC------CchhhhhccchhheeeeEEecC
Confidence 445555555554433221 24578889999999876 3457889999999999999999
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC-CeEEEEE
Q 011126 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-IVSAVCY 478 (493)
Q Consensus 400 g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~-~I~sv~~ 478 (493)
+.+++|+.||.|++|++.....+..+.|++.|.++...+ ++..+++++.|++++||+.. .+++...++. .|+++++
T Consensus 191 ~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 899999999999999995444445556999999999777 78999999999999999987 5555455554 8999999
Q ss_pred ccCCCEEEEeecCC
Q 011126 479 CPDGKVRQNSACNF 492 (493)
Q Consensus 479 spdG~~l~s~s~d~ 492 (493)
-++|.+++ |++|+
T Consensus 268 L~NgDIvv-g~SDG 280 (745)
T KOG0301|consen 268 LLNGDIVV-GGSDG 280 (745)
T ss_pred eeCCCEEE-eccCc
Confidence 99998764 44443
No 109
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=164.01 Aligned_cols=197 Identities=21% Similarity=0.337 Sum_probs=149.8
Q ss_pred ecccccceecc--CCCeEEeeecCCeEEEEECCCccccc---------cccccceeeecccCCEEEEEEccC-CCEEEEE
Q 011126 235 IDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSREL---------SSLYTGQEFLAHEGSILTMKFSLD-GQYLASG 302 (493)
Q Consensus 235 ~~~~~~~~fsp--~g~~lasgs~dg~V~vwd~~~~~~~~---------~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasg 302 (493)
.+.++.+..++ +..+.|+-+..|+|+||++......+ ....+..++.+|.+.=+.|+|||- ...|+||
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 33444444444 44567777889999999986533221 223344567899999999999992 2258888
Q ss_pred ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 303 s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
.--+.|++|...++.-. .. ..
T Consensus 231 Dc~~~I~lw~~~~g~W~--------------------------------------------------------vd---~~ 251 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWK--------------------------------------------------------VD---QR 251 (440)
T ss_pred ccccceEeeeeccCcee--------------------------------------------------------ec---Cc
Confidence 87888999988665311 00 12
Q ss_pred EEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC---cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID---RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (493)
Q Consensus 383 ~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~---~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd 457 (493)
.|.+|+..|-+|+|||.. .|++|+-|++|+|||++.+ .++.+-.|.+.|+-|.|+. +..+||+|+.||+++|||
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwD 330 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWD 330 (440)
T ss_pred cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEE
Confidence 256799999999999975 9999999999999999988 5666666999999999998 777999999999999999
Q ss_pred CCCC---eEE-EecCCCCCeEEEEEccCCC-EEEEeecC
Q 011126 458 VRRC---QVV-DYTDIREIVSAVCYCPDGK-VRQNSACN 491 (493)
Q Consensus 458 l~~~---~~~-~~~~~~~~I~sv~~spdG~-~l~s~s~d 491 (493)
++.- +++ .+..|+.+|++|.|+|... .|+++|.|
T Consensus 331 LR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 331 LRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred hhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 9964 344 6889999999999999754 55555544
No 110
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.9e-18 Score=155.09 Aligned_cols=239 Identities=15% Similarity=0.235 Sum_probs=170.0
Q ss_pred ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
.++.|++.|.+||+|..+|+|.|||+.+. ...+.+.+|..+|.+++||+||++|+|++.|..|.+||+..|.+
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTF-------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEcccc-------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence 45899999999999999999999998743 34556889999999999999999999999999999999999998
Q ss_pred eeeeeccCCCCceEEEeeCCCCceeeeeccCcc-------------------------------ccceeeeecCCCceEE
Q 011126 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK-------------------------------IDKTKSLRKSSDLTCV 367 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~s~~~~~~ 367 (493)
++.+..... +....+.+...+..+..-+.... ......+.+...+.+.
T Consensus 100 l~rirf~sp-v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 100 LKRIRFDSP-VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred eeEEEccCc-cceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 888776533 33333333333322221111100 0112234555666666
Q ss_pred EcCCCceeecccceEEEecCC-CCEeEEEEeCCC-eEEEEeCCCeEEEEECCC-------CcEE--EEec---CCCcEEE
Q 011126 368 VLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-------DRCL--RVFS---HNNYVTS 433 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~-------~~~~--~~~~---h~~~V~~ 433 (493)
+++...+. .+..++-.. ..|..|.++..| .|+.-+.|..||.|+++. +.+- +.+. ....-.+
T Consensus 179 v~~a~t~e----~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 179 VYDAETLE----CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred EEecchhe----eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 66555443 344444444 678899999999 999999999999999862 1111 1221 3344567
Q ss_pred EEEccCCCCEEEEEeCC-CeEEEEeCCCCeEEE-ecCCC-CCeEEEEEccCCCEEEEeec
Q 011126 434 VAFNPVDDNYFISGSID-GKVRIWEVRRCQVVD-YTDIR-EIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 434 v~fsp~d~~~l~sgs~D-g~V~IWdl~~~~~~~-~~~~~-~~I~sv~~spdG~~l~s~s~ 490 (493)
++|+. +|.|++.|+.. ..++||.-..|.+++ +.+.+ .....+.|+|-...+++-.+
T Consensus 255 ccfs~-dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s 313 (405)
T KOG1273|consen 255 CCFSG-DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS 313 (405)
T ss_pred eeecC-CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccC
Confidence 88998 99999888753 579999999999887 44554 56778889998777766543
No 111
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.2e-17 Score=154.34 Aligned_cols=190 Identities=18% Similarity=0.259 Sum_probs=138.7
Q ss_pred eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeee
Q 011126 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (493)
Q Consensus 280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (493)
+..|..+|.||.+++....+++|+.|++|++||.........+.... .+.+++... ...+.
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k--------------kVy~~~v~g-----~~LvV 150 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK--------------KVYCMDVSG-----NRLVV 150 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc--------------eEEEEeccC-----CEEEE
Confidence 56799999999999988899999999999999987643333332221 222222221 23345
Q ss_pred cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC----cEEEEec-C------
Q 011126 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID----RCLRVFS-H------ 427 (493)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~----~~~~~~~-h------ 427 (493)
+..+..+++|+.+......+ ..-..-.-.+.||++-|++ -++.++-||.|.+=.+... .....|+ |
T Consensus 151 g~~~r~v~iyDLRn~~~~~q--~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~ 228 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQ--RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD 228 (323)
T ss_pred eecCceEEEEEcccccchhh--hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence 66777888888876554321 1112234578899999977 7888899999998766654 2222332 2
Q ss_pred ---CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 428 ---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 428 ---~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
--+|++|+|+| -...||||+.||.|.+||+...+.+ .+......|.+++|+.||..||++++-
T Consensus 229 ~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 229 TEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ceEEEEeceeEecc-ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 23799999999 6889999999999999999988766 567777889999999999999999863
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=6.7e-18 Score=156.32 Aligned_cols=221 Identities=15% Similarity=0.236 Sum_probs=161.8
Q ss_pred ccCceeeeecccccceeccCCC--eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126 227 KLGAMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp~g~--~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (493)
.++.+..|.+.++++.|.+.-. .|++|+.||.|.+|+.+ .+.....+++|.+.|+.|+.+|.|++-++.+.
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-------CeEEeeeecccccccceeEecCCCceEEEEcC
Confidence 4567777888899999988876 89999999999999987 44566789999999999999999999999999
Q ss_pred CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
|+.+++||+.+|+.....+...... .+.|.+.+...++.. ...+-+|... ...+...
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~v~~-----------------~~~i~i~q~d-----~A~v~~~ 204 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFVVSG-----------------RNKIDIYQLD-----NASVFRE 204 (362)
T ss_pred CceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEEEEe-----------------ccEEEEEecc-----cHhHhhh
Confidence 9999999999988766555443322 244443332111110 0111111111 1111111
Q ss_pred ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEE--ccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF--NPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~f--sp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
......+.++.|-..+.|++|..|+.|++||.....++..|. |.+.|..+.+ +| ++.||+|++.||.|+|||++..
T Consensus 205 i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 205 IENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred hhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecC-CceEEEEeccCceEEEEEcccc
Confidence 112356788888777799999999999999999988888875 9999999985 45 7789999999999999999866
Q ss_pred -----eEEEecCCCCCeEEEEE
Q 011126 462 -----QVVDYTDIREIVSAVCY 478 (493)
Q Consensus 462 -----~~~~~~~~~~~I~sv~~ 478 (493)
+++...+....++++..
T Consensus 284 ~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 284 TKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred ccCCcceeEEeecCCccceeee
Confidence 34444555666776654
No 113
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=5.5e-18 Score=155.08 Aligned_cols=265 Identities=18% Similarity=0.279 Sum_probs=187.0
Q ss_pred cCCcceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCC---CccccccCCccccccccchhh
Q 011126 142 KDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGS---SSSFVQPLPSRQDEESRDLVD 215 (493)
Q Consensus 142 ~~~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~---s~~~v~~l~~~~~~~~~~~~~ 215 (493)
++|.++.|+--+.|.++..+..+. +.++ |+.+.+ ++.|-...|..+-++ -...||+++..-...
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h--~agE--vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S------ 107 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFH--HAGE--VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS------ 107 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhc--CCcc--eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc------
Confidence 469999999999999888877665 4444 777776 555555555533332 122277765432110
Q ss_pred hhhhhccccccccCcee-eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc
Q 011126 216 AKRKVKRGWLKKLGAMA-RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL 294 (493)
Q Consensus 216 ~~~~~k~~w~~~~~~~~-~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp 294 (493)
...-+.....+. .+..++.|+.|.|++..+|+-. +..|.+|++.........+... .-..|+...++-+|+|
T Consensus 108 -----~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss-~s~e~~~~ftsg~Wsp 180 (370)
T KOG1007|consen 108 -----NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSS-ESAEMRHSFTSGAWSP 180 (370)
T ss_pred -----ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccc-ccccccceecccccCC
Confidence 011111222222 3345777899999999988865 8899999998766532222221 1233777888999999
Q ss_pred --CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC
Q 011126 295 --DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (493)
Q Consensus 295 --dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 372 (493)
+|+.+++. .|++++.||+++.++...+
T Consensus 181 HHdgnqv~tt-~d~tl~~~D~RT~~~~~sI-------------------------------------------------- 209 (370)
T KOG1007|consen 181 HHDGNQVATT-SDSTLQFWDLRTMKKNNSI-------------------------------------------------- 209 (370)
T ss_pred CCccceEEEe-CCCcEEEEEccchhhhcch--------------------------------------------------
Confidence 88888876 4789999999876542221
Q ss_pred ceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEe
Q 011126 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGS 448 (493)
Q Consensus 373 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs 448 (493)
-..|...|.++.|+|+. +|++|+.|+.|+|||.+. ..++..+. |...|++|.|+|...++|++|+
T Consensus 210 -----------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 210 -----------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred -----------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence 13578889999999987 999999999999999985 44666665 9999999999999999999999
Q ss_pred CCCeEEEEeCCC------------------------------CeEEEecCCCCCeEEEEEccCCCEE
Q 011126 449 IDGKVRIWEVRR------------------------------CQVVDYTDIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 449 ~Dg~V~IWdl~~------------------------------~~~~~~~~~~~~I~sv~~spdG~~l 485 (493)
.|..|.+|.... +++..+..|.+.|.+++|+.-..++
T Consensus 279 SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 279 SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 999999997631 2223466788899999998654443
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.78 E-value=1.2e-17 Score=163.39 Aligned_cols=280 Identities=13% Similarity=0.135 Sum_probs=187.6
Q ss_pred CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeE
Q 011126 180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV 259 (493)
Q Consensus 180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V 259 (493)
|-.+....++-++. .|.+......- ..++.+.. |-...++++.|++.|..|++.+.....
T Consensus 179 GaR~~sGs~Dy~v~-----~wDf~gMdas~-------------~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 179 GARFVSGSLDYTVK-----FWDFQGMDASM-------------RSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred CceeeeccccceEE-----EEecccccccc-------------hhhhccCc--ccccccceeeecCCCCeEEEEecCcce
Confidence 66677777776666 56554332110 00222222 233456779999999999999999999
Q ss_pred EEEECCCcccc-cc--ccccc--eeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCee-eeeeeccCCCCceE
Q 011126 260 RVHPVKKQSRE-LS--SLYTG--QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHER-LDGFDVQDTDPSCL 332 (493)
Q Consensus 260 ~vwd~~~~~~~-~~--~~~~~--~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~-~~~~~~~~~~~~~~ 332 (493)
+|+|....... +. ..|.. ..-+||...++|.+|+|+ ...++|++.||++||||+...+. ...++.......
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~-- 316 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK-- 316 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc--
Confidence 99997654321 11 00000 123789999999999995 45889999999999999976542 333332211110
Q ss_pred EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC--CEeEEEEeCCC-eEEEEeCCC
Q 011126 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-FLLSSSADK 409 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~g-~l~sgs~Dg 409 (493)
.-.+..+.++... ..+..+..++.+-+|+...+... ...+.-..|.. .|++|+||++| +|++-+.|+
T Consensus 317 ------Rv~~tsC~~nrdg---~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 317 ------RVPVTSCAWNRDG---KLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred ------ccCceeeecCCCc---chhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 0111122222222 22456778888888886443332 22333456777 99999999999 999999999
Q ss_pred eEEEEECCC-CcEEEEec---CCCcEEEEEEccCCCCEEEEEeC------CCeEEEEeCCCCeEEE-ecCCCCCeEEEEE
Q 011126 410 TVRLWQVGI-DRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEVRRCQVVD-YTDIREIVSAVCY 478 (493)
Q Consensus 410 ~V~lWd~~~-~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~------Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~ 478 (493)
+++|||++. .+++.++. ..-+-+.++|+| +.++|++|.. -|++.+||..+.+.+. +.-....|..+.|
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W 465 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLW 465 (641)
T ss_pred ceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEee
Confidence 999999985 45665553 345567899999 9999999865 4789999999988775 4444667999999
Q ss_pred ccCCCEEEEeecCC
Q 011126 479 CPDGKVRQNSACNF 492 (493)
Q Consensus 479 spdG~~l~s~s~d~ 492 (493)
+|-=+.|.+|+.|+
T Consensus 466 hpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 466 HPKLNQIFAGSGDG 479 (641)
T ss_pred cchhhheeeecCCC
Confidence 99877666766664
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=6.9e-18 Score=170.33 Aligned_cols=229 Identities=21% Similarity=0.292 Sum_probs=181.6
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEE-EEEcc-CCCEEEEEECCCcE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSL-DGQYLASGGEDGTV 308 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fsp-dg~~Lasgs~Dg~V 308 (493)
+.+|...+..+++. ++..++++++||++++|.-..... .....+++|.+-|.. +++-+ ++..|++|+.|++|
T Consensus 10 l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~-----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQY-----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eccCccchheeEec-CCeEEeecCCCCceeeeeccCccc-----ccceecccCcceeeccceeccccCcceEeecccceE
Confidence 33444444444443 444899999999999998754332 122357789998888 88876 55679999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
.+|.+.....+..++.|...+.++...... ..++++-|.+..+|.... ....+.+|.
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-----------------~~iSgSWD~TakvW~~~~------l~~~l~gH~ 140 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-----------------TLISGSWDSTAKVWRIGE------LVYSLQGHT 140 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcC-----------------ceEecccccceEEecchh------hhcccCCcc
Confidence 999999999999998887766554421111 145677788888887643 345589999
Q ss_pred CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (493)
Q Consensus 389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~ 467 (493)
..|.+++.-|.+.++||+.|++|++|.- ++++++|. |.+.|..+++-| +..|++++.||.|++|++....+....
T Consensus 141 asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~ 216 (745)
T KOG0301|consen 141 ASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMH 216 (745)
T ss_pred hheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeee
Confidence 9999999999999999999999999985 77888886 999999999987 456899999999999999666666899
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCC
Q 011126 468 DIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 468 ~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+|..-|.++++.+++..+++.|-|.
T Consensus 217 ghtn~vYsis~~~~~~~Ivs~gEDr 241 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDGLIVSTGEDR 241 (745)
T ss_pred ccceEEEEEEecCCCCeEEEecCCc
Confidence 9999999999888888999888764
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.7e-18 Score=152.90 Aligned_cols=252 Identities=15% Similarity=0.130 Sum_probs=180.6
Q ss_pred CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceecc--CCCeEEeeecCC
Q 011126 180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKP--GDHELTLGQRMR 257 (493)
Q Consensus 180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp--~g~~lasgs~dg 257 (493)
|+.|+.+.-++++. |-+.-. ..-.+.+..+.+|...+..++|.. .|.+||+++.||
T Consensus 23 gkrlATcsSD~tVk-----If~v~~-----------------n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 23 GKRLATCSSDGTVK-----IFEVRN-----------------NGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred cceeeeecCCccEE-----EEEEcC-----------------CCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence 77888887776665 222111 111345567888888888888865 799999999999
Q ss_pred eEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcEEEEecCCC---eeeeeeeccCCCCceE
Q 011126 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEH---ERLDGFDVQDTDPSCL 332 (493)
Q Consensus 258 ~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~iWdl~~~---~~~~~~~~~~~~~~~~ 332 (493)
.|.||....+.. ....+...|...|++++|.| .|-.|++++.||.|.|.++... ...+....|...+..+
T Consensus 81 kVIiWke~~g~w-----~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 81 KVIIWKEENGRW-----TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred eEEEEecCCCch-----hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 999999886642 23345788999999999999 4678999999999999998655 1233345566667777
Q ss_pred EEeeCCCCceeeeeccCccc-cceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-----eEEEEe
Q 011126 333 YFTINHLSQLIPIDVDKEKI-DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-----FLLSSS 406 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-----~l~sgs 406 (493)
.+++........ +.... ...++..+..|..+.+|....-. -+.-+++.+|...|.+++|.|.- .|++++
T Consensus 156 swapa~~~g~~~---~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 156 SWAPASAPGSLV---DQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred eecCcCCCcccc---ccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 777664321111 11111 13456778888888888765431 12345589999999999999963 899999
Q ss_pred CCCeEEEEECCCC--cEEEE-ec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeEE
Q 011126 407 ADKTVRLWQVGID--RCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVV 464 (493)
Q Consensus 407 ~Dg~V~lWd~~~~--~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~~ 464 (493)
.||+|.||..+.. .-..+ +. ....+..+.|++ .|++|+.++.|++|.+|.-. .|+..
T Consensus 231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWKENVDGKWE 292 (299)
T ss_pred CCCcEEEEEecCccCcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEEeCCCCcEE
Confidence 9999999987632 11111 11 567899999999 99999999999999999765 34443
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=6e-18 Score=163.51 Aligned_cols=236 Identities=17% Similarity=0.245 Sum_probs=159.0
Q ss_pred eeeeecccccceeccCCC--eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCc
Q 011126 231 MARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT 307 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~--~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~ 307 (493)
+.-+..++.+++|||..+ ++|+|..-|+|-+||+....+..... ..+..|.++|.+|.|+| +...+++.++||+
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCce
Confidence 344567788899999875 88899999999999997444433332 24678999999999999 5568999999999
Q ss_pred EEEEecCCCeeeeeeeccCCCCc--eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPS--CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
||+-|+.....-..+........ .+.+.......+ .+..-+...+|+.+.. ......+.
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl----------------~~~~~G~f~~iD~R~~---~s~~~~~~ 319 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL----------------FGDNVGNFNVIDLRTD---GSEYENLR 319 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEE----------------EeecccceEEEEeecC---Cccchhhh
Confidence 99999977643222222111111 111111111111 1111112233333221 12244456
Q ss_pred cCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-----EEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-----~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
-|...|..|+++|.. +|+|++.|++++|||++.-. .+.++.|...|.++.|+| .+..|++.+.|..|+|||.
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP-s~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP-SGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcC-CCCceEeeccCCceEEeec
Confidence 688899999999987 99999999999999997422 366677999999999999 4545999999999999998
Q ss_pred C----CCeEEEecCCCC------CeEEEEEccCCCEEEEee
Q 011126 459 R----RCQVVDYTDIRE------IVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 459 ~----~~~~~~~~~~~~------~I~sv~~spdG~~l~s~s 489 (493)
. .-.......|.. .+....|.|+-.++++|.
T Consensus 399 s~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 399 SCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred ccccccCCccceeeccCcccccccchhheeCCCccEEEEec
Confidence 4 222222222221 244567999999988875
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.8e-17 Score=169.75 Aligned_cols=231 Identities=16% Similarity=0.153 Sum_probs=173.9
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
.|......++|.|+|.+|.+++.||.|++|+......+.. .+.-|...|.+++-. +.+|++|+.+++|.+|.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------TIDISGELVSSIACY--SNHFLTGSEQNTVLRYK 82 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc------hhhccCceeEEEeec--ccceEEeeccceEEEee
Confidence 3455566799999999999999999999999875532211 233377788887764 55999999999999999
Q ss_pred cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
+.+++.-..+.-...+..++.+..++. ....++.+..+.+...... .....+.+|.++|.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g~----------------~iaagsdD~~vK~~~~~D~----s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSGK----------------MIAAGSDDTAVKLLNLDDS----SQEKVLRGHDAPVL 142 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCCc----------------EEEeecCceeEEEEecccc----chheeecccCCcee
Confidence 987765433333333445555544332 2334555555555544322 33567899999999
Q ss_pred EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
+|.|+|++ +||+.+-||.|++||+.++.+.+++. ....++.++|+| ++..|+..+.|+.|++|+..+..
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCce
Confidence 99999999 99999999999999999998887764 245678899999 87788888899999999999987
Q ss_pred EEE---ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 463 VVD---YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 463 ~~~---~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
... ...+...++.+.|+|+|+|||+++-++
T Consensus 222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred eheeecccccccceEEEEEcCCCcEEeeeccCC
Confidence 652 334445599999999999999998654
No 119
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=1e-17 Score=151.43 Aligned_cols=215 Identities=20% Similarity=0.241 Sum_probs=160.4
Q ss_pred chhhhhccccccCC---CcccccccccCCCCCCccccccCCcccccc----------cc-----------chhhhhhhhc
Q 011126 166 DEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEE----------SR-----------DLVDAKRKVK 221 (493)
Q Consensus 166 ~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~----------~~-----------~~~~~~~~~k 221 (493)
.+|... ++.|+| |..|+...|+.+.. ||.+-+..... +. -......+..
T Consensus 17 ~~~~~~--v~Sv~wn~~g~~lasgs~dktv~-----v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 17 QGHVQK--VHSVAWNCDGTKLASGSFDKTVS-----VWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI 89 (313)
T ss_pred hhhhhc--ceEEEEcccCceeeecccCCceE-----EEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence 345444 667776 88888888888887 66554332110 00 0111233345
Q ss_pred cccccccCceeeeec-cccc--ceeccCCCeEEeeecCCeEEEEECCCccc-----------------------------
Q 011126 222 RGWLKKLGAMARIID-RHGS--ATLKPGDHELTLGQRMRRVRVHPVKKQSR----------------------------- 269 (493)
Q Consensus 222 ~~w~~~~~~~~~~~~-~~~~--~~fsp~g~~lasgs~dg~V~vwd~~~~~~----------------------------- 269 (493)
+.|+.+.++...... ...- +.|+|+|.+++++.+|..|.+.|.++...
T Consensus 90 r~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence 666666555333222 2222 88999999999999999998887765221
Q ss_pred -----cccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceee
Q 011126 270 -----ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP 344 (493)
Q Consensus 270 -----~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (493)
.+..+...+.+++|...+.||+|+|+|+|||+|+.|..+.+||+.+.-+
T Consensus 170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC-------------------------- 223 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC-------------------------- 223 (313)
T ss_pred eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh--------------------------
Confidence 1124455678999999999999999999999999999999999865433
Q ss_pred eeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEE
Q 011126 345 IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR 423 (493)
Q Consensus 345 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~ 423 (493)
++.+..+.-+|..|.|+.+| +||++++|..|-|=++.+|..+.
T Consensus 224 ------------------------------------~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 224 ------------------------------------ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred ------------------------------------heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE
Confidence 33445577889999999999 99999999999999999999999
Q ss_pred EecCCCcEEEEEEccCCCCEEEEEeCC
Q 011126 424 VFSHNNYVTSVAFNPVDDNYFISGSID 450 (493)
Q Consensus 424 ~~~h~~~V~~v~fsp~d~~~l~sgs~D 450 (493)
.+.+.++-..|+|+| ...+||-++.|
T Consensus 268 eI~~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 268 EIPCEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred EeeccCCceeEEecC-CCceeeEEecC
Confidence 999999999999999 78888877665
No 120
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.77 E-value=7.2e-18 Score=155.60 Aligned_cols=196 Identities=20% Similarity=0.312 Sum_probs=148.8
Q ss_pred eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC------------------eeeeeeeccCCCCceEEEeeCCC
Q 011126 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH------------------ERLDGFDVQDTDPSCLYFTINHL 339 (493)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~------------------~~~~~~~~~~~~~~~~~~~~~~~ 339 (493)
..+..|++++.+.+|+|||.++|+|+.|..|+|.|+... -.++++..+..++.++.|.+.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-- 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-- 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch--
Confidence 356789999999999999999999999999999998521 112233333333444433332
Q ss_pred CceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC
Q 011126 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI 418 (493)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~ 418 (493)
....+.++.+..+.+++...... +..........+|.+|.|+|.| +|+.|....+++|||+.+
T Consensus 184 --------------e~ILiS~srD~tvKlFDfsK~sa--KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 184 --------------ETILISGSRDNTVKLFDFSKTSA--KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred --------------hheEEeccCCCeEEEEecccHHH--HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 23445677787777776532211 1111122346789999999999 999999999999999999
Q ss_pred CcEEEEe----cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCC-CCCeEEEEEccCCCEEEEeecC
Q 011126 419 DRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDI-REIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 419 ~~~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~-~~~I~sv~~spdG~~l~s~s~d 491 (493)
.+|...- +|.+.|+++.+++ .+++.++|+.||.|+|||--.++++.. ..| ...|.+..|..+|++++++|.|
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred eeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 9987655 3999999999999 999999999999999999988888742 223 4579999999999999999877
Q ss_pred C
Q 011126 492 F 492 (493)
Q Consensus 492 ~ 492 (493)
-
T Consensus 327 S 327 (430)
T KOG0640|consen 327 S 327 (430)
T ss_pred c
Confidence 4
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.77 E-value=1.9e-16 Score=154.62 Aligned_cols=256 Identities=19% Similarity=0.236 Sum_probs=183.0
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecc-cCCEEEEEEccCCCEEEEEECCC
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDG 306 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs~Dg 306 (493)
.+.+.+..+.+..+.|+|.+..|+.....+.+.+|+..+...... ...+..+ +.-|.|++|.++|. +++|..+|
T Consensus 193 ~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~----~~~fek~ekk~Vl~v~F~engd-viTgDS~G 267 (626)
T KOG2106|consen 193 LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR----QGIFEKREKKFVLCVTFLENGD-VITGDSGG 267 (626)
T ss_pred cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE----eeccccccceEEEEEEEcCCCC-EEeecCCc
Confidence 445667777788899999999888888889999998876542111 1122222 35799999999996 67999999
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCC-------CCceeeeeccCccccc---------eeeeecCCCceEEEcC
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINH-------LSQLIPIDVDKEKIDK---------TKSLRKSSDLTCVVLP 370 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~~~~ 370 (493)
.|.||+..+.+..+....+...+.++.+.-++ ...+..++-+-.+... ...+..... .+++-.
T Consensus 268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~-di~vGT 346 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG-DILVGT 346 (626)
T ss_pred eEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCC-cEEEee
Confidence 99999998887777777777666666543332 1122222211111100 000111111 122222
Q ss_pred CCceee----cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEE
Q 011126 371 PKVFRL----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 371 ~~~~~~----~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~ 445 (493)
.+.+-+ .........+|......++.+|.. .++|++.|++++||+ ..+++......+++.|+.|+| .+ .+|
T Consensus 347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va 422 (626)
T KOG2106|consen 347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVA 422 (626)
T ss_pred ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEE
Confidence 222211 122334557899999999999998 999999999999999 566666667889999999999 77 999
Q ss_pred EEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 446 sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.|...|...+.|..+..++.......+++.+.|+|+|.+||+|+.|.+
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe
Confidence 999999999999999888876666999999999999999999998864
No 122
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.2e-17 Score=165.26 Aligned_cols=226 Identities=23% Similarity=0.357 Sum_probs=177.3
Q ss_pred hhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccc-ccccccceeeecccCCEEEEE
Q 011126 213 LVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMK 291 (493)
Q Consensus 213 ~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~-~~~~~~~~~l~~H~~~I~~l~ 291 (493)
+...++...+.|..++ ++..|.+.+..++|+|....|++++.||++++|++++.... ...+....+|.+|.++|.|++
T Consensus 273 ~~~~k~a~~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~ 351 (577)
T KOG0642|consen 273 LSDLKKAFTKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVV 351 (577)
T ss_pred hhhhhhhhheecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEE
Confidence 3345555667788777 88889999999999999999999999999999999542221 123445568999999999999
Q ss_pred EccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCC
Q 011126 292 FSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP 371 (493)
Q Consensus 292 fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 371 (493)
+.++++++++|+.||+|+.|++....- .+... + +
T Consensus 352 v~~n~~~~ysgg~Dg~I~~w~~p~n~d--p~ds~-------------------------------------d-------p 385 (577)
T KOG0642|consen 352 VPSNGEHCYSGGIDGTIRCWNLPPNQD--PDDSY-------------------------------------D-------P 385 (577)
T ss_pred ecCCceEEEeeccCceeeeeccCCCCC--ccccc-------------------------------------C-------c
Confidence 999999999999999999998742110 00000 0 0
Q ss_pred CceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE-----------------------------
Q 011126 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC----------------------------- 421 (493)
Q Consensus 372 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~----------------------------- 421 (493)
......+.||...|+.+++|+.. .|++++.||+|++|+......
T Consensus 386 ------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~ 459 (577)
T KOG0642|consen 386 ------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASF 459 (577)
T ss_pred ------chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhc
Confidence 01134578999999999999987 999999999999998643222
Q ss_pred ---------------EEEec--------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEE
Q 011126 422 ---------------LRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVC 477 (493)
Q Consensus 422 ---------------~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~ 477 (493)
+..+. -...++.+.++| ...+.+++..|+.|+++|..+++++. ...|...+++++
T Consensus 460 ~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla 538 (577)
T KOG0642|consen 460 RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA 538 (577)
T ss_pred ccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceeccee
Confidence 11111 113567888999 88999999999999999999999884 788999999999
Q ss_pred EccCCCEEEEeecCC
Q 011126 478 YCPDGKVRQNSACNF 492 (493)
Q Consensus 478 ~spdG~~l~s~s~d~ 492 (493)
+.|+|-+|+++++|.
T Consensus 539 i~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDG 553 (577)
T ss_pred ecCCCceEEeecCCc
Confidence 999999999998874
No 123
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=1.8e-17 Score=157.44 Aligned_cols=183 Identities=26% Similarity=0.402 Sum_probs=143.7
Q ss_pred CCeEEe---eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeeeeee
Q 011126 247 DHELTL---GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGF 322 (493)
Q Consensus 247 g~~las---gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~~~~ 322 (493)
.++||. ++.-|...|-.+.+..+.-.. ...+.||+++|..++|+| +.+.||||++|.+|.||++..+.....+
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~---~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l 120 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDAS---YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL 120 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCC---CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc
Confidence 345554 344456666665543322111 113579999999999999 7789999999999999999665432211
Q ss_pred eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--
Q 011126 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-- 400 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-- 400 (493)
..|+..+.||...|--++|+|.-
T Consensus 121 -------------------------------------------------------tepvv~L~gH~rrVg~V~wHPtA~N 145 (472)
T KOG0303|consen 121 -------------------------------------------------------TEPVVELYGHQRRVGLVQWHPTAPN 145 (472)
T ss_pred -------------------------------------------------------ccceEEEeecceeEEEEeecccchh
Confidence 24578899999999999999986
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe-cCCCC-CeEEEEE
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIRE-IVSAVCY 478 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~-~~~~~-~I~sv~~ 478 (493)
.|++++.|.+|.+|++.++..+.++.|.+.|+++.|+- +|.+|++.+.|.+|||||.++++++.. ..|.+ .-..+-|
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred hHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence 99999999999999999999999999999999999999 999999999999999999999999853 34443 3445667
Q ss_pred ccCCCEEEEe
Q 011126 479 CPDGKVRQNS 488 (493)
Q Consensus 479 spdG~~l~s~ 488 (493)
--+|+++.+|
T Consensus 225 l~~g~i~tTG 234 (472)
T KOG0303|consen 225 LASGKIFTTG 234 (472)
T ss_pred eccCceeeec
Confidence 7888855444
No 124
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.76 E-value=1.6e-17 Score=170.79 Aligned_cols=187 Identities=18% Similarity=0.361 Sum_probs=159.1
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
.+.+++.++.|++.+.|...|.|-+|+++.+...-+ +. .-.+|.++|+.++...-++.+++++.+|.+++||..+.
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s--f~--~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS--FG--DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc--cc--cCccccCceeEEEecCCCceEEEccCcceEEEEecCCc
Confidence 344589999999999999999999999986543221 00 12589999999999988899999999999999999766
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
..+..+.. ...+.++.+
T Consensus 526 ~l~~~l~l---------------------------------------------------------------~~~~~~iv~ 542 (910)
T KOG1539|consen 526 VLKKSLRL---------------------------------------------------------------GSSITGIVY 542 (910)
T ss_pred ceeeeecc---------------------------------------------------------------CCCcceeee
Confidence 54332221 234566666
Q ss_pred eCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeE
Q 011126 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (493)
Q Consensus 397 sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~ 474 (493)
+... .++.+..|-.|+++|+.+.+.++.|. |++.|+.++|+| ||++|++++.|++||+||+.++.++.......+++
T Consensus 543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~ 621 (910)
T KOG1539|consen 543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCT 621 (910)
T ss_pred eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEecCCcce
Confidence 6665 88999999999999999999999997 999999999999 99999999999999999999999999888899999
Q ss_pred EEEEccCCCEEEEeecC
Q 011126 475 AVCYCPDGKVRQNSACN 491 (493)
Q Consensus 475 sv~~spdG~~l~s~s~d 491 (493)
++.|+|+|.+||++..|
T Consensus 622 sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 622 SLSFSPNGDFLATVHVD 638 (910)
T ss_pred eeEECCCCCEEEEEEec
Confidence 99999999999998765
No 125
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.76 E-value=2.8e-18 Score=154.04 Aligned_cols=232 Identities=18% Similarity=0.270 Sum_probs=184.6
Q ss_pred eeeecccccceec---cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 232 ARIIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 232 ~~~~~~~~~~~fs---p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
.+|...+..++|+ |+|-+|++++.|+.-.+.+-.+..+ ..+|.+|++.|+....+.+....|+++.|-+-
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-------igtfeghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-------IGTFEGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-------EEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence 3455566666664 6899999999999888877654443 23689999999999999999999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
+|||..++..+..+... ..+..+.|..+... .++++.+..+.+++.... .-|...+.+|.
T Consensus 84 kvw~a~tgdelhsf~hk-hivk~~af~~ds~~----------------lltgg~ekllrvfdln~p---~App~E~~ght 143 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFEHK-HIVKAVAFSQDSNY----------------LLTGGQEKLLRVFDLNRP---KAPPKEISGHT 143 (334)
T ss_pred hhhhhhhhhhhhhhhhh-heeeeEEecccchh----------------hhccchHHHhhhhhccCC---CCCchhhcCCC
Confidence 99999999877766532 23344444433322 234444444545544332 34567788999
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~ 467 (493)
+.|..+.|.... .+++++.|++||+||.+++..++.+....+|+++.+++ +|++|.++ ..+.|.+||..+-.+++..
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEe-cCceeEEeccccccceeec
Confidence 999999999877 88888999999999999999999999999999999999 88887664 5678999999999999988
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCC
Q 011126 468 DIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 468 ~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
..+..|.+.+.+|+...+++|+-|+
T Consensus 222 k~P~nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 222 KMPCNVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred cCccccccccccCCCceEEecCcce
Confidence 8999999999999999999998765
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.9e-17 Score=168.93 Aligned_cols=189 Identities=17% Similarity=0.343 Sum_probs=154.1
Q ss_pred eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
+...-.+..++|+-+|+++|.|+.|-.|++-+......+ ..+.+|+++|.+|.|+|++.+||+.+-||.|+||
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-------eeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 334445566899999999999999999999998765533 3578999999999999999999999999999999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCCC
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSE 390 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~ 390 (493)
++.++.....+..-... ... ....
T Consensus 166 ~~~~~~~~~tl~~v~k~-------------------------------------------------------n~~~~s~i 190 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKD-------------------------------------------------------NEFILSRI 190 (933)
T ss_pred EcccchhhhhcccCCcc-------------------------------------------------------ccccccce
Confidence 99988765554322110 000 1455
Q ss_pred EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~ 466 (493)
+..++|+|+| .|+..+.|++|++|+.........+. +...+.+++|+| +|.|||+++.||.|-|||+.+.. .
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~---~ 266 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHE---R 266 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecccch---h
Confidence 6789999997 99999999999999999998888875 455599999999 99999999999999999999822 2
Q ss_pred cCCCCCeEEEEEccCCCEEE
Q 011126 467 TDIREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 467 ~~~~~~I~sv~~spdG~~l~ 486 (493)
......|++++|.|++..+-
T Consensus 267 ~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 267 HEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred ccccceeEEEecCCCCCeeE
Confidence 45567899999999987654
No 127
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=1.4e-17 Score=153.96 Aligned_cols=232 Identities=19% Similarity=0.334 Sum_probs=170.6
Q ss_pred CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
+.+.+|.+.+..++.......+.+++.|.+.+||.++... +...+.||.+.|++|+|++.+.++++++.|++.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-------CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-------CLATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeecccc-------ceeeecccccceeeEEeccccceEEEccCCcch
Confidence 4467788888888888888899999999999999988654 344689999999999999999999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
+||...-.-.+..-..+..... ....-..+ ............++. ....|+..+.+|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSs--------EeE~e~sD----e~~~d~d~~~~sD~~----------tiRvPl~~ltgH~ 272 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSS--------EEEEEHSD----EHNRDTDSSEKSDGH----------TIRVPLMRLTGHR 272 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCc--------hhhhhccc----ccccccccccccCCc----------eeeeeeeeeeccc
Confidence 9997421100000000000000 00000000 000000000011110 1135688899999
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC--eEE
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVV 464 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~--~~~ 464 (493)
+.|.+..|-..| .+++++.|.+..+||+.++..+..+. |....+.++-+| ..+++++.+.|.+.++||.+.. .+-
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~ 351 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVA 351 (481)
T ss_pred cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceee
Confidence 999999999988 99999999999999999999999986 999999999999 9999999999999999999843 233
Q ss_pred EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 465 DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
.+.+|.+.|+++.|.-|.+. ++|+.|
T Consensus 352 VFQGHtdtVTS~vF~~dd~v-VSgSDD 377 (481)
T KOG0300|consen 352 VFQGHTDTVTSVVFNTDDRV-VSGSDD 377 (481)
T ss_pred eecccccceeEEEEecCCce-eecCCC
Confidence 58999999999999988754 455544
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.7e-17 Score=156.01 Aligned_cols=231 Identities=18% Similarity=0.271 Sum_probs=166.4
Q ss_pred ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EEEEEECCCcEEEEec
Q 011126 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKV 313 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl 313 (493)
...+.++.|||...+|++++.|++++||.+...... ..+.+.--..+|.+..|.|+|+ .+++++.-..++.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----hheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 456778999999999999999999999999866544 2334555678999999999999 8999999999999999
Q ss_pred CCCeeeeeeeccCCC-CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 314 IEHERLDGFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
.+.+..+.-...... ...-.|...+...++.+ .+..+.+.+...+... .+..++ -.+.|.
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~--------------~G~~G~I~lLhakT~e----li~s~K-ieG~v~ 348 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAI--------------AGNNGHIHLLHAKTKE----LITSFK-IEGVVS 348 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEE--------------cccCceEEeehhhhhh----hhheee-eccEEe
Confidence 887653322111111 11112222222222222 2223333333322211 122232 357799
Q ss_pred EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcE--EEEEEccCCCCEEEEEeCCCeEEEEeCCCC------eE
Q 011126 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRC------QV 463 (493)
Q Consensus 393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~------~~ 463 (493)
.++|+.++ .|++++.+|.|.+||++...|++.|...+.| ++++.++ ++.|||+|+..|.|.|||..+. ++
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCc
Confidence 99999999 8888889999999999999999999755544 5677778 9999999999999999997643 34
Q ss_pred E-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126 464 V-DYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 464 ~-~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+ .+......|+++.|+||+++|+.++.
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred hhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 4 35667778999999999999998764
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=1.1e-17 Score=170.66 Aligned_cols=232 Identities=16% Similarity=0.262 Sum_probs=174.3
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~ 315 (493)
..+.++..++-..++.+++ ..++||.+........-......-+.-.-.+..++|.. +.++||+++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3445777888888888765 45777776654332211000001111123466788876 677999999999999999987
Q ss_pred ---CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 316 ---HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 316 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
.+.+..+..|...+.++.|.....+ ..+.++.|+.+..|+.+.. +...++.+....|.
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~---------------iliSGSQDg~vK~~DlR~~----~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPN---------------ILISGSQDGTVKCWDLRSK----KSKSTFRSNSESIR 180 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCcc---------------EEEecCCCceEEEEeeecc----cccccccccchhhh
Confidence 5566678888888888877666543 3457889999999988753 33566777889999
Q ss_pred EEEEeCCC--eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--EEe
Q 011126 393 DLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDY 466 (493)
Q Consensus 393 ~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~~~ 466 (493)
++.|+|.. +++++...|.+++||++. .++...+. |.++|.|+.|+| +..+|||||.|++|+|||+.+.+. +..
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~t 259 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHT 259 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeE
Confidence 99999964 999999999999999985 45555554 999999999999 999999999999999999986643 345
Q ss_pred cCCCCCeEEEEEccCCCEEEEee
Q 011126 467 TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 467 ~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.....+|..|.|.|..++.+..+
T Consensus 260 InTiapv~rVkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 260 INTIAPVGRVKWRPARSYHLATC 282 (839)
T ss_pred EeecceeeeeeeccCccchhhhh
Confidence 66678999999999988765443
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.9e-16 Score=157.56 Aligned_cols=231 Identities=17% Similarity=0.237 Sum_probs=177.9
Q ss_pred ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
...+.+++++.+.+.||.+-.+|.|.||++.. .++....+.+|. ..|-.|+|++ +..|++.+.+|.|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCC------CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEec
Confidence 35677799999999999999999999999875 344445666664 5799999995 557889999999999999
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (493)
.+++++..+......++.++..+.. ....+. +.++.+..+......+. ....+....+.|.+
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~--~~l~Ig--------------cddGvl~~~s~~p~~I~--~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPEN--TILAIG--------------CDDGVLYDFSIGPDKIT--YKRSLMRQKSRVLS 159 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCcc--ceEEee--------------cCCceEEEEecCCceEE--EEeecccccceEEE
Confidence 9999999998888777777766554 222222 22332222222211111 12223345789999
Q ss_pred EEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
|+|+|++ .+++|+.||.|++||+.++..++... ....|+++.|-. ...||+|..-|+|.+||...+.+
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTL 237 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcch
Confidence 9999999 79999999999999999998877332 234678888874 56799999999999999999998
Q ss_pred EE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 464 VD-YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 464 ~~-~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++ ..-|...|.+++..+++..++++|.|.
T Consensus 238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred hhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 85 778899999999999999999998764
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=3.2e-17 Score=159.84 Aligned_cols=230 Identities=17% Similarity=0.232 Sum_probs=192.9
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
+.+.++.+.|||+.|++|+.-.++.|||+......+. .++..-.-.+++++.+||.+..+++..||.|+|||+..
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 3455678999999999999999999999986544332 23344445788999999999999999999999999999
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
...++.++.+.....|+.+..++ +...+++.|..+..|+.+...... -......|.+|.
T Consensus 541 q~~VrqfqGhtDGascIdis~dG----------------tklWTGGlDntvRcWDlregrqlq-----qhdF~SQIfSLg 599 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDG----------------TKLWTGGLDNTVRCWDLREGRQLQ-----QHDFSSQIFSLG 599 (705)
T ss_pred ceeeecccCCCCCceeEEecCCC----------------ceeecCCCccceeehhhhhhhhhh-----hhhhhhhheecc
Confidence 99999999999999888876554 445678888999999887543211 112356899999
Q ss_pred EeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeE
Q 011126 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (493)
Q Consensus 396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~ 474 (493)
++|++ +|+.|-..+.|.|.............|...|.++.|.+ .|++|++.+.|.-+..|...-|..+........|.
T Consensus 600 ~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVl 678 (705)
T KOG0639|consen 600 YCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 678 (705)
T ss_pred cCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeeccccCcce
Confidence 99999 99999999999998887766666666999999999999 99999999999999999999988887777788999
Q ss_pred EEEEccCCCEEEEeecCC
Q 011126 475 AVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 475 sv~~spdG~~l~s~s~d~ 492 (493)
+...+-|.+++++|+.||
T Consensus 679 sCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 679 SCDISFDDKYIVTGSGDK 696 (705)
T ss_pred eeeeccCceEEEecCCCc
Confidence 999999999999999885
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=6.9e-17 Score=155.76 Aligned_cols=225 Identities=16% Similarity=0.207 Sum_probs=168.9
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccc--------------eeeecccCCEEEEEEccC-CCEEEEEECCCcEEE
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--------------QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRV 310 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~--------------~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~i 310 (493)
.|+++|.|+.+..|.|||+.-....+..+..+ ..-.+|+..|..|.|+.+ .+.|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46799999999999999986543322211111 123479999999999885 458999999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
||+.++++...+..+...+.++.|.+.... ..+.++.++.+.+.+.+...... ..-.-.+.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~---------------~LLsGs~D~~V~l~D~R~~~~s~----~~wk~~g~ 331 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPS---------------VLLSGSYDGTVALKDCRDPSNSG----KEWKFDGE 331 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCce---------------EEEeccccceEEeeeccCccccC----ceEEeccc
Confidence 999999999999988888888888776543 33567777788877766421111 11123578
Q ss_pred EeEEEEeCCC--eEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--E
Q 011126 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V 464 (493)
Q Consensus 391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~ 464 (493)
|-.++|.|.. .++++..||+|+-+|++.. +++.++. |.+.|.+|++++....+++|++.|+.|++|++..-.. +
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 9999999987 8889999999999999975 7888876 9999999999998899999999999999999975433 2
Q ss_pred EecCC-CCCeEEEEEccCCCEE-EEee
Q 011126 465 DYTDI-REIVSAVCYCPDGKVR-QNSA 489 (493)
Q Consensus 465 ~~~~~-~~~I~sv~~spdG~~l-~s~s 489 (493)
.-... -+...+.++.|+-.++ +.||
T Consensus 412 ~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 412 KEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred ccccccccceeecccCCCcceEEEecC
Confidence 21111 1235666777776544 4444
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=7e-17 Score=157.30 Aligned_cols=219 Identities=13% Similarity=0.220 Sum_probs=174.5
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
..|++......++++|+..+.|+|||++.. .+.+.+.+|+..|+++.++....|||+++..|-|.|..+.++.
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAK-------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHH-------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence 344555556689999999999999998722 2334578999999999999999999999999999999999888
Q ss_pred eeeeeeccCCCCc-eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 318 RLDGFDVQDTDPS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 318 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
....+........ .+.+.+.. +......+.++.+.+|+...... ..+-...|..+...|+|
T Consensus 155 ~tt~f~~~sgqsvRll~ys~sk---------------r~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSK---------------RFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPCRGICF 216 (673)
T ss_pred cccceecCCCCeEEEeeccccc---------------ceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCcCccee
Confidence 7766665533222 22332222 23334567778888888765322 13334579999999999
Q ss_pred eCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC-eEE-EecCCCCC
Q 011126 397 SKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-DYTDIREI 472 (493)
Q Consensus 397 sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~-~~~-~~~~~~~~ 472 (493)
+|.+ +|++.+.|+.|.+||++.......+....+.+.++|.| +|.+|+.|...|+|..||++.. .++ ....|...
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence 9988 89999999999999999999888888888999999999 9999999999999999999965 344 46778889
Q ss_pred eEEEEEccCC
Q 011126 473 VSAVCYCPDG 482 (493)
Q Consensus 473 I~sv~~spdG 482 (493)
|++|+|.|.-
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 9999999875
No 134
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.5e-17 Score=176.61 Aligned_cols=229 Identities=17% Similarity=0.262 Sum_probs=167.4
Q ss_pred ccceeccCCCe----EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCcEEEEec
Q 011126 239 GSATLKPGDHE----LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKV 313 (493)
Q Consensus 239 ~~~~fsp~g~~----lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~V~iWdl 313 (493)
+.++|.+.|.. ||.|..||.|.+|+..+-... .......++..|++.|..+.|++.. ++||+|+.||.|.|||+
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecchhhccC-cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 34677766665 888999999999998763111 1122233567899999999999954 59999999999999999
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC--CE
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EV 391 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V 391 (493)
...+...... .......+.++.++.. .......++..+.+++|+.+.. +++..+..|.+ .+
T Consensus 147 nn~~tP~~~~-----------~~~~~~eI~~lsWNrk--vqhILAS~s~sg~~~iWDlr~~----~pii~ls~~~~~~~~ 209 (1049)
T KOG0307|consen 147 NKPETPFTPG-----------SQAPPSEIKCLSWNRK--VSHILASGSPSGRAVIWDLRKK----KPIIKLSDTPGRMHC 209 (1049)
T ss_pred CCcCCCCCCC-----------CCCCcccceEeccchh--hhHHhhccCCCCCceeccccCC----CcccccccCCCccce
Confidence 8755433332 1111222333333322 2223346677788999998763 44555555444 57
Q ss_pred eEEEEeCCC--eEEEEeCCC---eEEEEECCC-CcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 392 LDLSWSKNG--FLLSSSADK---TVRLWQVGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 392 ~~l~~sp~g--~l~sgs~Dg---~V~lWd~~~-~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
..|+|+|++ .|++++.|. .|.+||++. ...++++ .|...|.++.|++.|..+|++++.|++|.+|+..+++++
T Consensus 210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 899999998 777777664 599999984 4567777 499999999999988899999999999999999999998
Q ss_pred E-ecCCCCCeEEEEEccCCCEE
Q 011126 465 D-YTDIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 465 ~-~~~~~~~I~sv~~spdG~~l 485 (493)
. +....+.+..+.|+|....+
T Consensus 290 ~~~p~~~nW~fdv~w~pr~P~~ 311 (1049)
T KOG0307|consen 290 GELPAQGNWCFDVQWCPRNPSV 311 (1049)
T ss_pred eecCCCCcceeeeeecCCCcch
Confidence 4 56667789999999987633
No 135
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=2.1e-17 Score=157.72 Aligned_cols=208 Identities=25% Similarity=0.422 Sum_probs=155.3
Q ss_pred cccccceeccCCC-eEEeeecCCeEEEEECCCccccc--cccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 236 ~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
..+..+.|+++.. .+|+|+.|..|+||.+......- ........+..|+.+|+++.|+|+|.+||||+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 3445578888776 99999999999999887544332 12233346788999999999999999999999999999997
Q ss_pred cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
...-. +. .... +. .. .... ......+.+|...|.
T Consensus 94 ~~~~~-~~--~~d~----e~------------------~~-----------------~ke~----w~v~k~lr~h~~diy 127 (434)
T KOG1009|consen 94 QGDVR-IF--DADT----EA------------------DL-----------------NKEK----WVVKKVLRGHRDDIY 127 (434)
T ss_pred ecCcC-Cc--cccc----hh------------------hh-----------------Cccc----eEEEEEecccccchh
Confidence 64310 00 0000 00 00 0000 011345678999999
Q ss_pred EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC--
Q 011126 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-- 468 (493)
Q Consensus 393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~-- 468 (493)
.++|+|++ ++++++.|.++++||+..+..+..+. |..+|..++|.| ..+|+++-+.|.+.+++.+...+++....
T Consensus 128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~ 206 (434)
T KOG1009|consen 128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLD 206 (434)
T ss_pred hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence 99999999 99999999999999999999999886 999999999999 99999999999988888887554432111
Q ss_pred ------------------C----CCCeEEEEEccCCCEEEEeec
Q 011126 469 ------------------I----REIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 469 ------------------~----~~~I~sv~~spdG~~l~s~s~ 490 (493)
| +.-...++|+|||..|++.+.
T Consensus 207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 1 112457889999999988653
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2e-16 Score=146.17 Aligned_cols=248 Identities=19% Similarity=0.239 Sum_probs=158.5
Q ss_pred CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceec-c-CCCeEEeeecCC
Q 011126 180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLK-P-GDHELTLGQRMR 257 (493)
Q Consensus 180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fs-p-~g~~lasgs~dg 257 (493)
||.++..+-++++. ||++-... +-|.......+|...+..+.|. | -|+.+|+++.|+
T Consensus 25 GRRmAtCSsDq~vk-----I~d~~~~s----------------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 25 GRRMATCSSDQTVK-----IWDSTSDS----------------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred CceeeeccCCCcEE-----EEeccCCC----------------CceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 77888888888777 77752211 1122223344455555556653 3 488999999999
Q ss_pred eEEEEECCCccccc--cccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcEEEEecCCCeeeeeeec---------
Q 011126 258 RVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERLDGFDV--------- 324 (493)
Q Consensus 258 ~V~vwd~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~--------- 324 (493)
+|.||.-.....+. .......++....+.|+.++|.| -|-.||+++.||.||||+......+.....
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99999875333222 23344456778889999999999 477899999999999998755433322221
Q ss_pred ----cCCCCceEEEeeCCCC-ceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 325 ----QDTDPSCLYFTINHLS-QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 325 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
+.....|+.|++.... +.+.++.+.... .-..+++|........-..+.++.+|..+|++|+|.|+
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~---------~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAP---------HLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCc---------cccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 1222334444433221 222222222100 00122222111111011235566799999999999997
Q ss_pred -C----eEEEEeCCCeEEEEECCCCc--------------------EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126 400 -G----FLLSSSADKTVRLWQVGIDR--------------------CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKV 453 (493)
Q Consensus 400 -g----~l~sgs~Dg~V~lWd~~~~~--------------------~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (493)
| +||+++.|| |+||.++... .+..+. |...|..+.|+- .|..|++.+.||+|
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~V 312 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCV 312 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCcee
Confidence 3 789999999 9999987311 122232 999999999999 99999999999999
Q ss_pred EEEeCC
Q 011126 454 RIWEVR 459 (493)
Q Consensus 454 ~IWdl~ 459 (493)
|+|...
T Consensus 313 RLWkan 318 (361)
T KOG2445|consen 313 RLWKAN 318 (361)
T ss_pred eehhhh
Confidence 999765
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6.5e-17 Score=156.85 Aligned_cols=224 Identities=17% Similarity=0.235 Sum_probs=156.2
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc--ccccceeeecccCCEEEEEEccCC--CEEEEEECCC
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS--SLYTGQEFLAHEGSILTMKFSLDG--QYLASGGEDG 306 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~--~~~~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg 306 (493)
+..|...++++.|+-||.+|++|++||.|.+|.+...-.... ...+...+..|+-+|+++...+.| .+|+|++.|.
T Consensus 119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence 355777888899999999999999999999998754222111 233445688999999999998753 4899999999
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
++++||+..+..+.++..+.. +.++.+ +.....+.++...+++.............-+. .+.+......+..+.|
T Consensus 199 t~k~wdlS~g~LLlti~fp~s-i~av~l--Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~--~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITFPSS-IKAVAL--DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN--QKGRHEENTQINVLVG 273 (476)
T ss_pred eEEEEEeccceeeEEEecCCc-ceeEEE--cccccEEEecCCcceEEeeehhcCCccccccc--ccccccccceeeeecc
Confidence 999999999998887766532 333333 33333333333333333322222211111000 2333344566788899
Q ss_pred CCC--CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 387 HSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 387 h~~--~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
|.+ .|+||+.+-+| +|++|+.||.|+|||+.+.++++++. ..++|+.+.+.|-....+..-.....+-.|++.
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 999 99999999999 99999999999999999999999998 789999999988333333333333445555543
No 138
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=147.21 Aligned_cols=203 Identities=19% Similarity=0.311 Sum_probs=145.4
Q ss_pred ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeee----eeeeccCCCCceEEEeeCCCCceeeeeccCccc
Q 011126 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI 352 (493)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (493)
...+++|.+.|++|+|+.||++||+++.|++|+||++...... ...+.....++.+.|.++-...++.+. .+..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~--~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK--RGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc--cCCE
Confidence 3467899999999999999999999999999999998764321 122233345666777766655544443 1111
Q ss_pred cceeeeecCCCce----EEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-
Q 011126 353 DKTKSLRKSSDLT----CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS- 426 (493)
Q Consensus 353 ~~~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~- 426 (493)
..........++. .+-|+. .+--..|.-.|..+-...++ +|++++.|.+|.||+++ |+.+..+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred EEEEEeeecccCCCCcccccccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 1111111111111 111111 11223477788888777777 99999999999999999 88888876
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC---CCe------EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR---RCQ------VVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~---~~~------~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
....-+..+.+| +|+++++++.---|++|.+- +|. +..+.+|...|++++|+|+...+++.+.|+
T Consensus 227 nq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 227 NQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred ccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 444556788999 99999999999999999973 332 346899999999999999999999999876
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=3.3e-16 Score=158.25 Aligned_cols=264 Identities=21% Similarity=0.291 Sum_probs=177.8
Q ss_pred ccccc--ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE
Q 011126 222 RGWLK--KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299 (493)
Q Consensus 222 ~~w~~--~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L 299 (493)
..|.. +++.+.+....-...-|+|++..+++-+..|-.++|..+... ...+...+.||.+.|..+.|+|.|.||
T Consensus 301 GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~----~w~~~~~iSGH~~~V~dv~W~psGefl 376 (764)
T KOG1063|consen 301 GIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT----FWTQEPVISGHVDGVKDVDWDPSGEFL 376 (764)
T ss_pred ceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc----ceeeccccccccccceeeeecCCCCEE
Confidence 44543 444555444444457899999999999999999999832211 222233478999999999999999999
Q ss_pred EEEECCCcEEEEecC----CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccce--------------------
Q 011126 300 ASGGEDGTVRVWKVI----EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT-------------------- 355 (493)
Q Consensus 300 asgs~Dg~V~iWdl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 355 (493)
++.+.|-+-|++--- +...+..-+.|.....|+.+..... .++..+ ..++.+.
T Consensus 377 Lsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~-~FVSgA--dEKVlRvF~aPk~fv~~l~~i~g~~~~ 453 (764)
T KOG1063|consen 377 LSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL-QFVSGA--DEKVLRVFEAPKSFVKSLMAICGKCFK 453 (764)
T ss_pred EEeccccceeeecccccccceeeecccccccccceeeehccCCc-eeeecc--cceeeeeecCcHHHHHHHHHHhCcccc
Confidence 999999999998643 1122333344455555655544211 111100 0000000
Q ss_pred -----------ee-------ee--cCCCceE-EEcCC-----Cceee-------------cccceEEEecCCCCEeEEEE
Q 011126 356 -----------KS-------LR--KSSDLTC-VVLPP-----KVFRL-------------LEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 356 -----------~~-------~~--~s~~~~~-~~~~~-----~~~~~-------------~~~~~~~~~~h~~~V~~l~~ 396 (493)
.. .. ....+.. ..+-. ....+ .-..++.+.||...|++++.
T Consensus 454 ~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~ 533 (764)
T KOG1063|consen 454 GSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAI 533 (764)
T ss_pred CchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEe
Confidence 00 00 0000000 00000 00000 01345678999999999999
Q ss_pred eCCC-eEEEEeCC-----CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-----
Q 011126 397 SKNG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV----- 464 (493)
Q Consensus 397 sp~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~----- 464 (493)
+|+| ++|+++.. ..|+||+..+-..+..+. |.-.|+.++|+| |++||++.+.|.++.+|........
T Consensus 534 s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa 612 (764)
T KOG1063|consen 534 SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFA 612 (764)
T ss_pred cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhc
Confidence 9999 88988754 459999998877777554 999999999999 9999999999999999998654322
Q ss_pred EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 465 DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
....|...|++..|+|+++++++++.||.
T Consensus 613 ~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 613 CLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred cccccceEEEEcccCcccceeEEecCCce
Confidence 36789999999999999999999999873
No 140
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=1.1e-16 Score=150.79 Aligned_cols=229 Identities=18% Similarity=0.212 Sum_probs=175.8
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+|.+.+..++++. ..+++++.|.+|+.|.+... ..+++. ..+.++.|.-+..+..++|||++ |.
T Consensus 104 ~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~--------p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~ 170 (433)
T KOG0268|consen 104 TFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP--------PLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--ID 170 (433)
T ss_pred eeecccCceeeEEecc--cceEEecCCcceeeeeccCC--------cceeee-ccccccccccccccccccccCce--ee
Confidence 4566777777777777 67888889999999998752 222333 24567777777777889999875 99
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
|||.....++..+......+.++.+.+...+.+. ....+..+++++.+......+.+. ..
T Consensus 171 IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa---------------s~~sDrsIvLyD~R~~~Pl~KVi~-----~m 230 (433)
T KOG0268|consen 171 IWDEQRDNPVSSMSWGADSISSVKFNPVETSILA---------------SCASDRSIVLYDLRQASPLKKVIL-----TM 230 (433)
T ss_pred ecccccCCccceeecCCCceeEEecCCCcchhee---------------eeccCCceEEEecccCCccceeee-----ec
Confidence 9999988888888888777777777666544333 345677788888776544333333 23
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD- 465 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~- 465 (493)
..+.|+|+|.+ .+++|+.|..+..||++.- +++..+. |.+.|..|.|+| .|+-|++||.|.+||||.++.+..-.
T Consensus 231 RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 231 RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-CcchhccccccceEEEeecCCCcchhh
Confidence 45689999977 9999999999999999853 4555554 999999999999 99999999999999999999876543
Q ss_pred -ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 466 -YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 466 -~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
...--..|.++.|+.|.+++++|+.|.
T Consensus 310 YhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 310 YHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred hhHhhhheeeEEEEeccccEEEecCCCc
Confidence 334445799999999999999998763
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=1.7e-14 Score=141.08 Aligned_cols=223 Identities=13% Similarity=0.160 Sum_probs=146.1
Q ss_pred cccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEEecCC
Q 011126 238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE 315 (493)
Q Consensus 238 ~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iWdl~~ 315 (493)
+..++|+|++..+ +++..++.|++|+....... ..+..|. .+..+.|+|++++|+++ +.|+.|++||+.+
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 3458999999876 56778999999998754321 1233333 35678999999977654 5689999999998
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
.+.+..+.... .+..+.+.+++. .+..... ....+..++...... ..... ....+..++
T Consensus 105 ~~~~~~~~~~~-~~~~~~~~~dg~--~l~~~~~-------------~~~~~~~~d~~~~~~----~~~~~-~~~~~~~~~ 163 (300)
T TIGR03866 105 RKVLAEIPVGV-EPEGMAVSPDGK--IVVNTSE-------------TTNMAHFIDTKTYEI----VDNVL-VDQRPRFAE 163 (300)
T ss_pred CeEEeEeeCCC-CcceEEECCCCC--EEEEEec-------------CCCeEEEEeCCCCeE----EEEEE-cCCCccEEE
Confidence 87766664322 234444444332 2211111 111222233322111 11111 223457899
Q ss_pred EeCCC-eE-EEEeCCCeEEEEECCCCcEEEEecCC--------CcEEEEEEccCCCCEEEE-EeCCCeEEEEeCCCCeEE
Q 011126 396 WSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHN--------NYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 396 ~sp~g-~l-~sgs~Dg~V~lWd~~~~~~~~~~~h~--------~~V~~v~fsp~d~~~l~s-gs~Dg~V~IWdl~~~~~~ 464 (493)
|+|++ +| +++..++.|++||+.+++++..+... .....++|+| ++++++. .+.++.|.+||+.+++++
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 99999 55 45557999999999999887766411 1235689999 8887544 456778999999998887
Q ss_pred EecCCCCCeEEEEEccCCCEEEEeec
Q 011126 465 DYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
....+...+.+++|+|+|++|++++.
T Consensus 243 ~~~~~~~~~~~~~~~~~g~~l~~~~~ 268 (300)
T TIGR03866 243 DYLLVGQRVWQLAFTPDEKYLLTTNG 268 (300)
T ss_pred EEEEeCCCcceEEECCCCCEEEEEcC
Confidence 65455568999999999999987643
No 142
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.69 E-value=3.3e-16 Score=158.31 Aligned_cols=203 Identities=21% Similarity=0.300 Sum_probs=156.8
Q ss_pred ccccCceeeeecccccceeccCCCeEEeeecCC-----eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE
Q 011126 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299 (493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg-----~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L 299 (493)
|+...++.+|-..+.+++.+|+|+++|++++.. .|++|+.. .....+.+.+|.-.|+.|+|||||+||
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-------~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-------NWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-------chhhhheecccceEEEEEEECCCCcEE
Confidence 445556788888899999999999999988654 58999876 333455789999999999999999999
Q ss_pred EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeeccc
Q 011126 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (493)
Q Consensus 300 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (493)
++.+.|.++.+|........ .+
T Consensus 588 LsvsRDRt~sl~~~~~~~~~-e~--------------------------------------------------------- 609 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKD-EF--------------------------------------------------------- 609 (764)
T ss_pred EEeecCceEEeeeeecccch-hh---------------------------------------------------------
Confidence 99999999999987432210 00
Q ss_pred ceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC--cEEEE---ecCCCcEEEEEEccCCCC----EEEEEeC
Q 011126 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRV---FSHNNYVTSVAFNPVDDN----YFISGSI 449 (493)
Q Consensus 380 ~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~--~~~~~---~~h~~~V~~v~fsp~d~~----~l~sgs~ 449 (493)
.....+.|+.-|.+..|+|++ +++|+|.|++|++|..... +.+.. +++...|+.++|.|.+.+ .++.|-.
T Consensus 610 ~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle 689 (764)
T KOG1063|consen 610 RFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLE 689 (764)
T ss_pred hhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEec
Confidence 011246799999999999999 8999999999999998877 44444 358999999999986554 7888999
Q ss_pred CCeEEEEeCCCC-e------------EEEecCCCCCeEEEEEccC----------CCEEEEeecCC
Q 011126 450 DGKVRIWEVRRC-Q------------VVDYTDIREIVSAVCYCPD----------GKVRQNSACNF 492 (493)
Q Consensus 450 Dg~V~IWdl~~~-~------------~~~~~~~~~~I~sv~~spd----------G~~l~s~s~d~ 492 (493)
.|.|.+|....- + .-....+...|+.++|.|. ...|++++.|-
T Consensus 690 ~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~ 755 (764)
T KOG1063|consen 690 KGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDE 755 (764)
T ss_pred ccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccc
Confidence 999999996511 1 1123456678999999975 23457777654
No 143
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=2.8e-15 Score=138.31 Aligned_cols=234 Identities=12% Similarity=0.137 Sum_probs=157.8
Q ss_pred CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeE
Q 011126 180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV 259 (493)
Q Consensus 180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V 259 (493)
...++..+.+.++- +|++........ +.+..|...+-+++|+-+|..+++|+.|+.+
T Consensus 40 ~~~~~A~SWD~tVR-----~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVR-----IWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred CceEEecccCCceE-----EEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 44566667777776 777654210000 1223345566679999999999999999999
Q ss_pred EEEECCCccccccccccceeeecccCCEEEEEEccCCC--EEEEEECCCcEEEEecCCCeeeeeeeccCCC-----CceE
Q 011126 260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVRVWKVIEHERLDGFDVQDTD-----PSCL 332 (493)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~-----~~~~ 332 (493)
++||+...+. +.+..|.++|.++.|-+... .|+||+.|++|+.||.+....+.++..++.. ...+
T Consensus 97 k~wDL~S~Q~--------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm 168 (347)
T KOG0647|consen 97 KLWDLASGQV--------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPM 168 (347)
T ss_pred EEEEccCCCe--------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCce
Confidence 9999986642 24678999999999988655 8999999999999999998888888776531 1222
Q ss_pred EEeeCCCCceeeeeccCccccc------------eee--------eecCCCceEEEcCCCceeecccceEEEecCCC---
Q 011126 333 YFTINHLSQLIPIDVDKEKIDK------------TKS--------LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--- 389 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~------------~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--- 389 (493)
.........+..+++....... ... .-++-.+.+.+....... .+.-..|+.|..
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~--~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN--PKDNFTFKCHRSTNS 246 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCC--ccCceeEEEeccCCC
Confidence 2223333344444442211100 000 222333333332222110 023345666652
Q ss_pred ------CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEE
Q 011126 390 ------EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 390 ------~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sg 447 (493)
.|++|+|+|.. .|+|++.||++.+||-.....++... |..+|+|..|+. +|.++|-+
T Consensus 247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~-~G~ifaYA 311 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR-NGSIFAYA 311 (347)
T ss_pred CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC-CCCEEEEE
Confidence 47789999975 99999999999999999888888865 999999999999 99988754
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.68 E-value=1.9e-14 Score=140.82 Aligned_cols=238 Identities=13% Similarity=0.185 Sum_probs=165.2
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
.+.+++|.++|. +++|..+|.|.||+..... ..+...+|.+.|.+++.-.+|.+| +|+.|..|..|| ..-
T Consensus 248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y 317 (626)
T KOG2106|consen 248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNY 317 (626)
T ss_pred EEEEEEEcCCCC-EEeecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCccEe-ecCccceEEecc-ccc
Confidence 355689999987 6799999999999985432 222344999999999999999755 599999999999 444
Q ss_pred eeeeeeeccCCCCceEEEeeCCCC--------ceeeeeccCc-----------------cccceeeeecCCCceEEEcCC
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLS--------QLIPIDVDKE-----------------KIDKTKSLRKSSDLTCVVLPP 371 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-----------------~~~~~~~~~~s~~~~~~~~~~ 371 (493)
+.++..+.++.....-.+..+... .++....... .......++.+.+..+.+|+.
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~ 397 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND 397 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC
Confidence 444444444332222222222211 1111111100 001122345566677777763
Q ss_pred CceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC
Q 011126 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451 (493)
Q Consensus 372 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg 451 (493)
. ++..+ ..-..++.|+.|+|.|.++.|...|...|.|..+...+.....+.+++++.|+| +|.+||.|+.|+
T Consensus 398 ~------k~~wt-~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 398 H------KLEWT-KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDN 469 (626)
T ss_pred C------ceeEE-EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCC
Confidence 2 22221 123567889999999999999999999999999977777766789999999999 999999999999
Q ss_pred eEEEEeCCCC-eEE-Ee-cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 452 KVRIWEVRRC-QVV-DY-TDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 452 ~V~IWdl~~~-~~~-~~-~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.|+||.+... ... .. .-+..+|+.+.|++|++++.+-+.|+
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ 513 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY 513 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCce
Confidence 9999999754 222 22 22338999999999999999877654
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5e-17 Score=164.81 Aligned_cols=214 Identities=21% Similarity=0.412 Sum_probs=181.3
Q ss_pred cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 245 p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
|.+.+++.+...-.++||+.+ ++.+|...|.++..-..++.+++|+.|..+-+|.+.....+..+..
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~-------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~ 68 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTR-------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG 68 (825)
T ss_pred Ccccccceeeeeeccccccch-------------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeec
Confidence 344455556666667778755 3567999999999877889999999999999999988877777888
Q ss_pred cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE
Q 011126 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~ 403 (493)
+..++.++.+.... .....+..++.+.+|+... .+.++++.||...+..+.|+|-+ +.+
T Consensus 69 hespIeSl~f~~~E----------------~LlaagsasgtiK~wDlee----Ak~vrtLtgh~~~~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 69 HESPIESLTFDTSE----------------RLLAAGSASGTIKVWDLEE----AKIVRTLTGHLLNITSVDFHPYGEFFA 128 (825)
T ss_pred cCCcceeeecCcch----------------hhhcccccCCceeeeehhh----hhhhhhhhccccCcceeeeccceEEec
Confidence 88877777764433 2334667788899998863 34577899999999999999999 889
Q ss_pred EEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccC
Q 011126 404 SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD 481 (493)
Q Consensus 404 sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spd 481 (493)
+|+.|.-+++||++...|.+.+. |...|.++.|+| +|+++++|+.|.+++|||+..|+++ .+..|...+.++.|+|.
T Consensus 129 ~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 129 SGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred cccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCch
Confidence 99999999999999999999997 999999999999 9999999999999999999999998 47779999999999999
Q ss_pred CCEEEEeecCC
Q 011126 482 GKVRQNSACNF 492 (493)
Q Consensus 482 G~~l~s~s~d~ 492 (493)
.-.++.|+.|.
T Consensus 208 e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 208 EVLLAPGSSDR 218 (825)
T ss_pred hhhhccCCCCc
Confidence 99999998875
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=1.2e-15 Score=140.14 Aligned_cols=205 Identities=21% Similarity=0.365 Sum_probs=140.6
Q ss_pred ecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeee-eccCccccceeee
Q 011126 281 LAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI-DVDKEKIDKTKSL 358 (493)
Q Consensus 281 ~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 358 (493)
..|.+.|+++...+ .|+|+++|+.||.|.+||++.......-..- ....|+.-.......-+.+ ....-....-.+.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-AKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-eheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 35899999999998 7899999999999999999765421100000 0001110000000000000 0000111222345
Q ss_pred ecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC----eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEE
Q 011126 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS 433 (493)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g----~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~ 433 (493)
..+-|..+.+|+...... ...|. ..+.|..-+|+|-. ++|+|..|-.|++-|+.++.+.+++. |.+.|.+
T Consensus 119 ssSFDhtlKVWDtnTlQ~----a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQE----AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred cccccceEEEeeccccee----eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 667788888998876443 22222 35677888888843 88999999999999999999999997 9999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEeCCCC--e--EE-----------E-ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 434 VAFNPVDDNYFISGSIDGKVRIWEVRRC--Q--VV-----------D-YTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~V~IWdl~~~--~--~~-----------~-~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+.|+|...-.|++|+.||.|++||++.. - ++ + -..|.+.|+.++|+.||.++++.+.|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 9999966777899999999999999854 1 11 1 34577789999999999999877654
No 147
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=3.8e-15 Score=154.27 Aligned_cols=241 Identities=20% Similarity=0.177 Sum_probs=166.0
Q ss_pred ecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC--EEEEEECCCcEEEE
Q 011126 235 IDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVRVW 311 (493)
Q Consensus 235 ~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~V~iW 311 (493)
...+.++.|+|... ++|.|..+|.|.+||+.......... .......|..+|+.+.|..+.. -+++++.||.|..|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 35566788998664 66778899999999998776542211 1112356899999999987544 49999999999999
Q ss_pred ecCCCeeeeeeecc------------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc-
Q 011126 312 KVIEHERLDGFDVQ------------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE- 378 (493)
Q Consensus 312 dl~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~- 378 (493)
++..-......... ......+.|.+... ..++.++..|.+............
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p---------------~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP---------------NHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC---------------ceEEEEcCCcEEEEEeccCCccccc
Confidence 87544332111110 11122223322222 223445555555543333222222
Q ss_pred ---cceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECC-CCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCC
Q 011126 379 ---KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG 451 (493)
Q Consensus 379 ---~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~-~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg 451 (493)
++...+..|.+.|..+.++|=+ .+++++ |.+|+||... ...++..+. +.++|++++|+|.....|+++..||
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 4455677899999999999987 555555 9999999988 556665554 7888999999999999999999999
Q ss_pred eEEEEeCCCCe--EE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 452 KVRIWEVRRCQ--VV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 452 ~V~IWdl~~~~--~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.|.|||+.... ++ ...-+....+.+.|+++|+.|++|...+
T Consensus 465 ~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG 508 (555)
T ss_pred ceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence 99999998543 22 3333466778889999999999997654
No 148
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=6.2e-15 Score=140.40 Aligned_cols=199 Identities=18% Similarity=0.233 Sum_probs=155.9
Q ss_pred cCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECC
Q 011126 228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGED 305 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D 305 (493)
...+.+|...+-.++|.|.. ..||+|+.|.+|+||++..............++.+|+..|-.++|+|. .+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 34566777888889999855 578899999999999998777655555667789999999999999995 4588999999
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
.+|.||++.+++.+. ++.
T Consensus 154 n~v~iWnv~tgeali--------------------------------------------------------------~l~ 171 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALI--------------------------------------------------------------TLD 171 (472)
T ss_pred ceEEEEeccCCceee--------------------------------------------------------------ecC
Confidence 999999998886421 123
Q ss_pred cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCC-cEEEEEEccCCCCEEEEEe---CCCeEEEEeCC
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNN-YVTSVAFNPVDDNYFISGS---IDGKVRIWEVR 459 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~-~V~~v~fsp~d~~~l~sgs---~Dg~V~IWdl~ 459 (493)
|...|++++|+.+| +|+|.+.|+.|||||.++++.+..- .|.+ .-..+.|-. ++.++.||- .+..+-+||..
T Consensus 172 -hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 172 -HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred -CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcc
Confidence 88999999999999 9999999999999999999998876 3543 445566766 788555553 36789999987
Q ss_pred CCe---EEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 460 RCQ---VVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 460 ~~~---~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+-+ .....+....|.---|.||.+++...|.
T Consensus 250 nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 250 NLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred cccCcceeEEeccCCceEEeeecCCCCEEEEEec
Confidence 542 2244555666666678888888776664
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=5.9e-15 Score=148.39 Aligned_cols=223 Identities=15% Similarity=0.230 Sum_probs=138.8
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
.+..++|.|||..|+.+. +.++.|||...+. ..+++++|++.|++++|+.||+.+|+|+.|+.|.+|.-.-.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc-------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 566699999999888874 4579999987554 34578999999999999999999999999999999985432
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
..++ ..|...+.|+.|.+-......+ .... .-+|. ...+.+... .....|.+.+|
T Consensus 86 G~Lk--YSH~D~IQCMsFNP~~h~LasC-sLsd----------------FglWS-----~~qK~V~K~-kss~R~~~CsW 140 (1081)
T KOG1538|consen 86 GILK--YSHNDAIQCMSFNPITHQLASC-SLSD----------------FGLWS-----PEQKSVSKH-KSSSRIICCSW 140 (1081)
T ss_pred ceee--eccCCeeeEeecCchHHHhhhc-chhh----------------ccccC-----hhhhhHHhh-hhheeEEEeee
Confidence 2211 2344456666665543221111 1000 00111 111111110 11234445555
Q ss_pred eCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEE----------------------------------------
Q 011126 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVT---------------------------------------- 432 (493)
Q Consensus 397 sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~---------------------------------------- 432 (493)
..+| +|+.|-.+|+|.|-+-.....+..-. .+.+|+
T Consensus 141 tnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~ 220 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRA 220 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccccc
Confidence 5555 55555555555554322222111111 233344
Q ss_pred ------EEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 433 ------SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 433 ------~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
|+++.| +|.|++.|+.|+.+++|--..-.+-........|+++...|++++++.|+.|++
T Consensus 221 L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 221 LNFDPCCISYFT-NGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred CCCCchhheecc-CCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence 455555 888999999999999985443333355667778999999999999999998874
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.4e-15 Score=139.49 Aligned_cols=144 Identities=22% Similarity=0.394 Sum_probs=125.6
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceE
Q 011126 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (493)
Q Consensus 287 I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 366 (493)
-.|+.|++.|.+||.|..||.|.|||+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------ 57 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------ 57 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence 78999999999999999999999999866431
Q ss_pred EEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC------
Q 011126 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV------ 439 (493)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~------ 439 (493)
...+.+|..+|++++||++| .|+|++.|..|.+||+..+.+++.+...++|+.++|+|.
T Consensus 58 --------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 58 --------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred --------------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 23457899999999999999 999999999999999999999999888888888888764
Q ss_pred ----------------------------------------CCCEEEEEeCCCeEEEEeCCCCeEEEecCC--CCCeEEEE
Q 011126 440 ----------------------------------------DDNYFISGSIDGKVRIWEVRRCQVVDYTDI--REIVSAVC 477 (493)
Q Consensus 440 ----------------------------------------d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~--~~~I~sv~ 477 (493)
.|+|+++|...|++.|+|..+.+++..... ...|..+-
T Consensus 124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~ 203 (405)
T KOG1273|consen 124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQII 203 (405)
T ss_pred EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEE
Confidence 688999999999999999999998853322 35789999
Q ss_pred EccCCCEEEEeecCC
Q 011126 478 YCPDGKVRQNSACNF 492 (493)
Q Consensus 478 ~spdG~~l~s~s~d~ 492 (493)
++..|+.|++-++|.
T Consensus 204 ~s~~g~~liiNtsDR 218 (405)
T KOG1273|consen 204 VSRKGRFLIINTSDR 218 (405)
T ss_pred EeccCcEEEEecCCc
Confidence 999999999888774
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.65 E-value=4.7e-15 Score=137.95 Aligned_cols=223 Identities=19% Similarity=0.324 Sum_probs=148.4
Q ss_pred eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC---CEEEEEEccCCCEEEEEECCCcEEEEec-CCCee
Q 011126 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGEDGTVRVWKV-IEHER 318 (493)
Q Consensus 243 fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~Dg~V~iWdl-~~~~~ 318 (493)
..|+..++|+.+++.-|++||.-+.....+ +. ...|.. +-.+++|+|||.+|++| ....|+|+|+ +.|..
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraS--y~---~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRAS--YR---AYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD 192 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccc--hh---hhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence 357888999999999999999987653322 11 122333 34689999999999865 5678999999 44432
Q ss_pred eeeeecc-------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 319 LDGFDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 319 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
...+... ...+.++++.+.....+. +.... ....++.++ ...|+..+.+|.+.|
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a-~gsY~------------q~~giy~~~------~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLA-VGSYG------------QRVGIYNDD------GRRPLQLLGGHGGGV 253 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCccee-eeccc------------ceeeeEecC------CCCceeeecccCCCe
Confidence 2211111 112233333333221111 11111 111111111 135788889999999
Q ss_pred eEEEEeCCC-eEEEEe-CCCeEEEEECCCC-cEEEEec-CCC-cEEE--EEEccCCCCEEEEEeCCCeEEEEeCCC-Ce-
Q 011126 392 LDLSWSKNG-FLLSSS-ADKTVRLWQVGID-RCLRVFS-HNN-YVTS--VAFNPVDDNYFISGSIDGKVRIWEVRR-CQ- 462 (493)
Q Consensus 392 ~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~-~~~~~~~-h~~-~V~~--v~fsp~d~~~l~sgs~Dg~V~IWdl~~-~~- 462 (493)
+.|.|+++| .|.+|+ .|..|..||++.. .++..+. |.. .-.. ....| ++++|++|+.||.|++||+++ +.
T Consensus 254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCc
Confidence 999999999 888876 4788999999853 3444443 432 2233 45568 899999999999999999998 55
Q ss_pred EEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 463 VVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 463 ~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+..+..+...++.++++|-=.++++++..
T Consensus 333 ~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccccccccccceecCcccceeeeccCc
Confidence 44678888999999999998888887653
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=1.5e-15 Score=151.90 Aligned_cols=192 Identities=15% Similarity=0.282 Sum_probs=147.8
Q ss_pred eeccCCCeEEe--eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCee
Q 011126 242 TLKPGDHELTL--GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 242 ~fsp~g~~las--gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
-|+.+...+|+ .+.-|.|-||++....+....... .+. ....|+.+.|.| |.+.||.++.||.|++|.+..+..
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p--~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMP--GLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccc--ccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 46666667766 556799999999865543221111 111 345799999999 888999999999999999876543
Q ss_pred eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC
Q 011126 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 398 (493)
.... ..|...+.+|...|+.|.|+|
T Consensus 663 ~e~~-------------------------------------------------------~tPe~~lt~h~eKI~slRfHP 687 (1012)
T KOG1445|consen 663 PENE-------------------------------------------------------MTPEKILTIHGEKITSLRFHP 687 (1012)
T ss_pred Cccc-------------------------------------------------------CCcceeeecccceEEEEEecc
Confidence 2111 234556788999999999999
Q ss_pred CC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE-EEe--cCCCCC
Q 011126 399 NG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-VDY--TDIREI 472 (493)
Q Consensus 399 ~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~-~~~--~~~~~~ 472 (493)
-. .|++++.|-+|+|||+.+......+. |.+.|..++|+| +|+.+|+.+.||+|+||+.+.++. +.. ......
T Consensus 688 LAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 688 LAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred hhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence 75 99999999999999999987766664 999999999999 999999999999999999987643 321 112233
Q ss_pred eEEEEEccCCCEEEEeecCC
Q 011126 473 VSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 473 I~sv~~spdG~~l~s~s~d~ 492 (493)
--.|.|.-||+++++.|-|+
T Consensus 767 gARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 767 GARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ceeEEEEecCcEEEEecccc
Confidence 45678889999999998776
No 153
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.65 E-value=6.4e-15 Score=149.20 Aligned_cols=228 Identities=21% Similarity=0.259 Sum_probs=170.2
Q ss_pred eEEeeecCCeEEEEECCCccc-------ccc-----ccccce------------------eeecccCCEEEEEEccCCCE
Q 011126 249 ELTLGQRMRRVRVHPVKKQSR-------ELS-----SLYTGQ------------------EFLAHEGSILTMKFSLDGQY 298 (493)
Q Consensus 249 ~lasgs~dg~V~vwd~~~~~~-------~~~-----~~~~~~------------------~l~~H~~~I~~l~fspdg~~ 298 (493)
.+++++.|++|++|++..... .++ ..+... ...+..-.|.+++.+|+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 488999999999999875211 000 000000 11223456999999999999
Q ss_pred EEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 299 Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
||+|..-|++|||++.+-+....+..|+..+.|+.++... +.......++.+..+.+++.+.. .
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~-------------~~~kLLASasrdRlIHV~Dv~rn---y 537 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV-------------LTNKLLASASRDRLIHVYDVKRN---Y 537 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCch-------------hhhHhhhhccCCceEEEEecccc---c
Confidence 9999999999999999888877888877777666654332 23344456778888888877532 2
Q ss_pred cceEEEecCCCCEeEEEEeCCC---eEEEEeCCCeEEEEECCCCcEEEEec------CCCcEEEEEEccCCCCEEEEEeC
Q 011126 379 KPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
.+++++.+|...|+++.|.-.| .+++++.|+.|.+--.+...-...|. ....++.++..| ...++++++.
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQ 616 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQ 616 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEec
Confidence 3477889999999999998876 89999999988654333222222221 235688999999 9999999999
Q ss_pred CCeEEEEeCCCCeEEE-e---cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 450 DGKVRIWEVRRCQVVD-Y---TDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 450 Dg~V~IWdl~~~~~~~-~---~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
|..|+|||+..++.++ + .+|.+....+...|.|.|++++.+|++
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt 664 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT 664 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence 9999999999998775 2 456677888999999999999999874
No 154
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=5.1e-15 Score=147.50 Aligned_cols=212 Identities=19% Similarity=0.349 Sum_probs=163.4
Q ss_pred eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceee
Q 011126 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (493)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (493)
..+.+|++.|.+|...|.|.+|++|+.||+||||.+.++.++.++.... .+.+++|++.....+++++...........
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 3578999999999999999999999999999999999999999887754 688899998888877776655441100000
Q ss_pred --------------e-e---cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCC---CeEEEEE
Q 011126 358 --------------L-R---KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQ 415 (493)
Q Consensus 358 --------------~-~---~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~D---g~V~lWd 415 (493)
. . ...+..++.|........++-++....|...|..|.|+..| ||++...+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 0 0 22334555665543333344466777899999999999999 99887654 6799999
Q ss_pred CCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 416 VGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 416 ~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+.....+..|. ..+.|.++.|+| ...+|+.++ -..|+|||+..+.++. +......|.+++.+|.|..|++++-|+
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred cccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 99888777775 678899999999 555666555 4469999999877763 556667899999999999999998764
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.65 E-value=1.3e-15 Score=148.44 Aligned_cols=230 Identities=15% Similarity=0.182 Sum_probs=157.0
Q ss_pred cccceeccCCCe-EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 238 HGSATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 238 ~~~~~fsp~g~~-lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
+.++.|.....+ +|+-+.|..|++|.-.+...+.. ......+. .-.|++......|+++||..+.|+|||+...
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp---~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVP---RVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccc---eeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH
Confidence 344666665542 23345788899997655432221 11112222 2233333334589999999999999999866
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC-CCCEeEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLS 395 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~ 395 (493)
.+.+.++.|...+.++.+...... +...+..+.+.+....... ....|... ...|.-|.
T Consensus 112 l~hr~lkdh~stvt~v~YN~~Dey----------------iAsvs~gGdiiih~~~t~~----~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYNNTDEY----------------IASVSDGGDIIIHGTKTKQ----KTTTFTIDSGQSVRLLR 171 (673)
T ss_pred HHhhhccCCcceeEEEEecCCcce----------------eEEeccCCcEEEEecccCc----cccceecCCCCeEEEee
Confidence 666667777665555554333211 1122222333333222111 11223322 33456899
Q ss_pred EeCCC--eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC
Q 011126 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (493)
Q Consensus 396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~ 471 (493)
|+|.. +|.+++.+|.|.|||+....++..+. |..+...|+|+|.+..+|++.+.|.+|.+||++..+.........
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~ 251 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH 251 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC
Confidence 99987 88899999999999999988888775 999999999999999999999999999999999888777666777
Q ss_pred CeEEEEEccCCCEEEEeecCC
Q 011126 472 IVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 472 ~I~sv~~spdG~~l~s~s~d~ 492 (493)
+.++++|.++|.+|++|...+
T Consensus 252 Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred CcceeeecCCceEEEeecCCc
Confidence 899999999999999997653
No 156
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3.3e-15 Score=143.72 Aligned_cols=202 Identities=22% Similarity=0.290 Sum_probs=142.0
Q ss_pred ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
..++|+++|..|++|+.||.+|||++......+ ++.+|...|.+|.|+|||++|++-+.| ..+||++.++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-------~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-------EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-------hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 348999999999999999999999987544332 457799999999999999999999999 899999999965
Q ss_pred eeeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc-cceEEEecCCCCEeEEE
Q 011126 319 LDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 319 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~ 395 (493)
+........+ ...+.|........+.+.. .....+.+..++...|.... -+..+...-...|++++
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa-----------~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAA-----------SQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEE-----------ecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence 5444321111 1122222222111111111 11111122222222222110 01111222345799999
Q ss_pred EeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
.+++| +++.|+.||.|.|++..+-++++..+ |...|+.+.|+| +.+++++-+.|..+.|..+.-
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 99999 99999999999999999999988886 999999999999 999999999999999887764
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.64 E-value=3.9e-15 Score=138.83 Aligned_cols=179 Identities=26% Similarity=0.464 Sum_probs=136.2
Q ss_pred CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
..++|+|+.-|.|+|.|+.+.+ ....+.+|.+.|+.|+|.|+ .++|++|+.|.+||+|++++..++..+-
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~-------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-- 175 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQ-------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-- 175 (385)
T ss_pred CeeEEeecceeEEEEEecchhh-------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec--
Confidence 5689999999999999987554 33457899999999999995 4689999999999999999887654332
Q ss_pred CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE
Q 011126 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s 404 (493)
-..||...|.++.|+++| +|++
T Consensus 176 ---------------------------------------------------------G~egHrdeVLSvD~~~~gd~i~S 198 (385)
T KOG1034|consen 176 ---------------------------------------------------------GVEGHRDEVLSVDFSLDGDRIAS 198 (385)
T ss_pred ---------------------------------------------------------ccccccCcEEEEEEcCCCCeeec
Confidence 146799999999999999 9999
Q ss_pred EeCCCeEEEEECCCCcE-------------------------EEEec----CCCcEEE----------------------
Q 011126 405 SSADKTVRLWQVGIDRC-------------------------LRVFS----HNNYVTS---------------------- 433 (493)
Q Consensus 405 gs~Dg~V~lWd~~~~~~-------------------------~~~~~----h~~~V~~---------------------- 433 (493)
+++|.+|++|++...+. +..|. |.++|-|
T Consensus 199 cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 199 CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKP 278 (385)
T ss_pred cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEec
Confidence 99999999999862210 00000 3332222
Q ss_pred ----------------------------------EEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-----EecCCCCCeE
Q 011126 434 ----------------------------------VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVS 474 (493)
Q Consensus 434 ----------------------------------v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-----~~~~~~~~I~ 474 (493)
.+|+| -.++||.|...|+|++||++..... ........|.
T Consensus 279 gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR 357 (385)
T KOG1034|consen 279 GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR 357 (385)
T ss_pred chhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence 23445 5678999999999999999977653 2233456799
Q ss_pred EEEEccCCCEEEEeecCC
Q 011126 475 AVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 475 sv~~spdG~~l~s~s~d~ 492 (493)
..+|+-||..|+....|.
T Consensus 358 Q~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDG 375 (385)
T ss_pred eeeecccCcEEEEEeCCC
Confidence 999999999998777654
No 158
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.3e-14 Score=127.63 Aligned_cols=216 Identities=21% Similarity=0.344 Sum_probs=149.7
Q ss_pred ccceeccCCCeEEeeecCCeEEEEECCCcccc---ccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRE---LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~---~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
-.-+++|.+++|++|..+|.|.+..++..... ...-...-..++|.++|+.|+|. ..+|++|+ ||.|+-|...+
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E 90 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNE 90 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehh
Confidence 34678999999999999999999988642211 11111112358999999999998 44777776 59999998755
Q ss_pred Ceeee------eeecc-------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126 316 HERLD------GFDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 316 ~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
..... ....+ -..+..+...+... ..+....|..++.|+....++ ..
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en----------------Si~~AgGD~~~y~~dlE~G~i----~r 150 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN----------------SILFAGGDGVIYQVDLEDGRI----QR 150 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCC----------------cEEEecCCeEEEEEEecCCEE----EE
Confidence 43211 11110 01112222221111 122334677777777665444 67
Q ss_pred EEecCCCCEeEEEE-eCCCeEEEEeCCCeEEEEECCCCcEEEEec-----------CCCcEEEEEEccCCCCEEEEEeCC
Q 011126 383 EFQGHSSEVLDLSW-SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----------HNNYVTSVAFNPVDDNYFISGSID 450 (493)
Q Consensus 383 ~~~~h~~~V~~l~~-sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-----------h~~~V~~v~fsp~d~~~l~sgs~D 450 (493)
+++||+..|.++.- +.++.+++|+.||++||||.++++++..+. ....|.+++- +..+|+.|+ .
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-G 226 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-G 226 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-C
Confidence 89999999999988 445599999999999999999999998885 2345677776 457777765 5
Q ss_pred CeEEEEeCCCCeEEEecCCCCCeEEEEEccC
Q 011126 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481 (493)
Q Consensus 451 g~V~IWdl~~~~~~~~~~~~~~I~sv~~spd 481 (493)
.++.+|.++..+.......+.++..+.|-.|
T Consensus 227 p~lslwhLrsse~t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPIPARVHLVDFVDD 257 (325)
T ss_pred CceeEEeccCCCceEEEecccceeEeeeecc
Confidence 5799999999998888888888888888655
No 159
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=2.8e-15 Score=147.51 Aligned_cols=201 Identities=19% Similarity=0.299 Sum_probs=150.3
Q ss_pred CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCC
Q 011126 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327 (493)
Q Consensus 248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~ 327 (493)
..++.++.||++.|.+-...- ...+.+|.++|.+-.|+|||.-|+++|+||.|+||. .+|....++.....
T Consensus 76 d~~~i~s~DGkf~il~k~~rV--------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARV--------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEecccchh--------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc
Confidence 467888899999998754221 224678999999999999999999999999999998 46666666666677
Q ss_pred CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEe
Q 011126 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (493)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs 406 (493)
.+.|+.|.++..+.+++.. +.+.+-+.. . ...+...+.|.+-|.++.|++.. ++++|+
T Consensus 147 ~v~c~~W~p~S~~vl~c~g-----------------~h~~IKpL~---~-n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG-----------------GHISIKPLA---A-NSKIIRWRAHDGLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred eeEEEEECCCCCceEEecC-----------------CeEEEeecc---c-ccceeEEeccCcEEEEeecCccccceeecC
Confidence 7888888887766554321 111111111 1 11244568899999999999988 999999
Q ss_pred CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEE
Q 011126 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~ 486 (493)
.|-..+|||.........-.|..+|++++|+| + ..++.++.. ++|+ .....+.|..++|+|||..++
T Consensus 206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~n-t~R~----------~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSYN-TARF----------SSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred CceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeeee-eeee----------cCCCccceEEEEEcCCCceee
Confidence 99999999987665555556999999999999 6 667766654 3441 122346789999999999998
Q ss_pred EeecC
Q 011126 487 NSACN 491 (493)
Q Consensus 487 s~s~d 491 (493)
+|.+.
T Consensus 273 ~gt~~ 277 (737)
T KOG1524|consen 273 CGTST 277 (737)
T ss_pred ccccC
Confidence 88764
No 160
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.63 E-value=1.8e-14 Score=148.49 Aligned_cols=251 Identities=16% Similarity=0.244 Sum_probs=177.3
Q ss_pred ecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 235 IDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 235 ~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
..++..++|..||+ .+|+|+..|.+.+||+++....- +...+|.+.|..+.|.|....|++++.|..+++|=.
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~------v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN------VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee------eeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 46788899999997 56677788999999998765332 234589999999999999999999999999999966
Q ss_pred CCCe----eeeeeeccCCCCceEEEeeCCCCceeeeeccC----------------------------------------
Q 011126 314 IEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK---------------------------------------- 349 (493)
Q Consensus 314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 349 (493)
.++. .++.-..|..++.|+.+.......+.....+.
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 5432 23333445555555554322211111111000
Q ss_pred --------cccc--ceeeeecCCCceEEEcCCC-------------------------------------------ceee
Q 011126 350 --------EKID--KTKSLRKSSDLTCVVLPPK-------------------------------------------VFRL 376 (493)
Q Consensus 350 --------~~~~--~~~~~~~s~~~~~~~~~~~-------------------------------------------~~~~ 376 (493)
.... .........+..+..|+.+ .+++
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 0000 0000000111111111110 1111
Q ss_pred cccc-eEEE---ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC
Q 011126 377 LEKP-LHEF---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451 (493)
Q Consensus 377 ~~~~-~~~~---~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg 451 (493)
+... ...+ ..|.++|+.++....+ .+++++.+|.+++||......+..+.....++++..+. ...+++.+..|-
T Consensus 478 QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr-~s~l~a~~~ddf 556 (910)
T KOG1539|consen 478 QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR-VSDLLAIALDDF 556 (910)
T ss_pred ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee-hhhhhhhhcCce
Confidence 1111 1223 4789999999998877 99999999999999999999999999889999999998 888999999999
Q ss_pred eEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 452 KVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 452 ~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.|+++|+.+.+++. +.+|.+.|++++|||||++|++++-|.
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~ 598 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS 598 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence 99999999999985 788999999999999999999998775
No 161
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.2e-14 Score=146.82 Aligned_cols=200 Identities=16% Similarity=0.260 Sum_probs=158.6
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+....+.+++.+|.+..++.|+.||.+..++.....-++... |.-.++.|.++.|+|++..|++|+.||.|+
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-----l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-----LMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-----cccccceEEEEEecCCccEEEecccCceEE
Confidence 445555677789999999999999999988888877665444433 333578999999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHS 388 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~ 388 (493)
+||+.++..+...... +..+ ++..
T Consensus 180 iwd~~~~~t~~~~~~~-------------------------------------------------------~d~l~k~~~ 204 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQ-------------------------------------------------------LDRLSKREP 204 (691)
T ss_pred EEEcCCCceEEEeeec-------------------------------------------------------ccccccCCc
Confidence 9999887754321110 0001 1123
Q ss_pred CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--E-
Q 011126 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V- 464 (493)
Q Consensus 389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~- 464 (493)
.-|.++.|-.++.|++|..-|+|.+||...+..+..+. |...|.|++..+ +++++.+++.|++|..+...+.+. +
T Consensus 205 ~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 205 TIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred eEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CCCeEEEccCCCceEEEEecCCccceee
Confidence 34677888888899999999999999999999999887 999999999999 899999999999999999887633 2
Q ss_pred --EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 465 --DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 465 --~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
....|...|.+++..++ .+++||.|+
T Consensus 284 ~~~r~~h~hdvrs~av~~~--~l~sgG~d~ 311 (691)
T KOG2048|consen 284 NSRRDLHAHDVRSMAVIEN--ALISGGRDF 311 (691)
T ss_pred eccccCCcccceeeeeecc--eEEecceee
Confidence 35667888999999888 777887765
No 162
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.63 E-value=1.5e-13 Score=134.35 Aligned_cols=212 Identities=17% Similarity=0.213 Sum_probs=143.1
Q ss_pred cceeccCCCeEEe-eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC-cEEEEecCCCe
Q 011126 240 SATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIEHE 317 (493)
Q Consensus 240 ~~~fsp~g~~las-gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-~V~iWdl~~~~ 317 (493)
.++|+|+++.+++ +..++.|++||+..... + ..+. +...+..++|+|+|++|+++..++ .+.+||..+++
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~------~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKV-L------AEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeE-E------eEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 4789999997765 45689999999875331 1 1222 233468899999999999988775 56778998877
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-----C--CCC
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-----H--SSE 390 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-----h--~~~ 390 (493)
....+... ..+..+.+.+++. .+ .+....++.+.+|+...... +..+.. + ...
T Consensus 149 ~~~~~~~~-~~~~~~~~s~dg~--~l-------------~~~~~~~~~v~i~d~~~~~~----~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 149 IVDNVLVD-QRPRFAEFTADGK--EL-------------WVSSEIGGTVSVIDVATRKV----IKKITFEIPGVHPEAVQ 208 (300)
T ss_pred EEEEEEcC-CCccEEEECCCCC--EE-------------EEEcCCCCEEEEEEcCccee----eeeeeecccccccccCC
Confidence 65544322 2233334433321 11 12223345666666654322 122211 1 112
Q ss_pred EeEEEEeCCC-e-EEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCCCeEEEec
Q 011126 391 VLDLSWSKNG-F-LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVVDYT 467 (493)
Q Consensus 391 V~~l~~sp~g-~-l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~~~~~~~~ 467 (493)
...++|+|++ + +++.+.++.|.+||+.+++.+..+.+...+.+++|+| ++.+|+++ ..+|+|+|||+.+++++...
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 3568899998 4 4455667789999999988887777777899999999 99988876 56899999999999987644
Q ss_pred CCCCCeEEEEEcc
Q 011126 468 DIREIVSAVCYCP 480 (493)
Q Consensus 468 ~~~~~I~sv~~sp 480 (493)
......+.++++|
T Consensus 288 ~~~~~~~~~~~~~ 300 (300)
T TIGR03866 288 KVGRLPWGVVVRP 300 (300)
T ss_pred EcccccceeEeCC
Confidence 4556778888876
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=4.6e-15 Score=147.14 Aligned_cols=221 Identities=17% Similarity=0.246 Sum_probs=153.1
Q ss_pred ccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccc---cccceeeecccCCEEEEEEccCCCEEEE
Q 011126 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS---LYTGQEFLAHEGSILTMKFSLDGQYLAS 301 (493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~---~~~~~~l~~H~~~I~~l~fspdg~~Las 301 (493)
.+++-+...|...|-|+++.+++..+.+|+.||+|+.|++......... ......+.||++.|+.+++++...+|++
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence 3445567788888999999999999999999999999988744333221 2334568999999999999999999999
Q ss_pred EECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (493)
Q Consensus 302 gs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (493)
++.||+||+|+...... .++...........+..........+. +.....++...+.... .+
T Consensus 414 cs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~----------------s~~~~~~~~~~~ev~s-~~ 475 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA----------------SFRFGYTSIDDMEVVS-DL 475 (577)
T ss_pred ecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh----------------hcccccccchhhhhhh-he
Confidence 99999999999866554 333332222222222111111000000 0000011111000000 00
Q ss_pred EEEe-------cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126 382 HEFQ-------GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452 (493)
Q Consensus 382 ~~~~-------~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (493)
..+. .-...+.-+.++|++ +.+++..|+.|+++|..++..++... |...++++++.| ++-+|++|+.|+.
T Consensus 476 ~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~s 554 (577)
T KOG0642|consen 476 LIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGS 554 (577)
T ss_pred eeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCce
Confidence 0010 112457778899988 99999999999999999999988775 999999999999 9999999999999
Q ss_pred EEEEeCCCCeEE
Q 011126 453 VRIWEVRRCQVV 464 (493)
Q Consensus 453 V~IWdl~~~~~~ 464 (493)
|++|.+....++
T Consensus 555 v~l~kld~k~~~ 566 (577)
T KOG0642|consen 555 VRLWKLDVKTCV 566 (577)
T ss_pred eehhhccchhee
Confidence 999999876655
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.8e-15 Score=161.03 Aligned_cols=215 Identities=20% Similarity=0.321 Sum_probs=168.1
Q ss_pred cCceeeeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECC
Q 011126 228 LGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGED 305 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~D 305 (493)
+.....|...|..+.|++... +||+|+.+|.|.|||+.+....+... -+.-.+.|.+++|+. ..+.|++++.+
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~s 183 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPS 183 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCC
Confidence 344555667777799999877 99999999999999999865544322 233567899999987 45688999999
Q ss_pred CcEEEEecCCCeeeeeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
|.+.|||++..+.+-.+...... ...+.|.+++...++...-+ .....+.+|+.+. ...|++.
T Consensus 184 g~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d------------d~~PviqlWDlR~---assP~k~ 248 (1049)
T KOG0307|consen 184 GRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD------------DSAPVIQLWDLRF---ASSPLKI 248 (1049)
T ss_pred CCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCC------------CCCceeEeecccc---cCCchhh
Confidence 99999999988776666554442 34566666665554433221 1223455566543 3467888
Q ss_pred EecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
+.+|...|.+|.|++.+ +|++++.|+.|.+|+..+++.+..+. ..+.+..+.|+|.+...|+..+.||+|.|+.+.+
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 89999999999999987 99999999999999999999999997 6789999999998888999999999999999986
Q ss_pred Ce
Q 011126 461 CQ 462 (493)
Q Consensus 461 ~~ 462 (493)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 54
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.60 E-value=3.2e-14 Score=142.90 Aligned_cols=229 Identities=15% Similarity=0.219 Sum_probs=157.4
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeee--ee
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG--FD 323 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~--~~ 323 (493)
..+.||.+..+|.|.++|.....-.+.. .......+|...|..++|.|...+|++++.|.++++||+.+.++... +.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 3467899999999999998765433111 11234678999999999999666899999999999999999887766 55
Q ss_pred ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec-----------------------ccc
Q 011126 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-----------------------EKP 380 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-----------------------~~~ 380 (493)
.|...+..++|.+... ..+..++.|+.+++|+.+..... .+.
T Consensus 142 GH~~SvkS~cf~~~n~---------------~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNP---------------AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred ccccccchhhhccCCC---------------cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 6655555555544432 23456677777777766432210 012
Q ss_pred eEEEecCCCCEeE---EEEeCCC-eEEEEeC-CCeEEEEECCCCcEEEEec---------C---CCcEEEEEEccCCCCE
Q 011126 381 LHEFQGHSSEVLD---LSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFS---------H---NNYVTSVAFNPVDDNY 443 (493)
Q Consensus 381 ~~~~~~h~~~V~~---l~~sp~g-~l~sgs~-Dg~V~lWd~~~~~~~~~~~---------h---~~~V~~v~fsp~d~~~ 443 (493)
++....|...|.. +-+..|. .||+++. |+.|+|||++...+..... | .-.++++.... .|.+
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~ 285 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTY 285 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCe
Confidence 2333456666655 5555665 8898887 9999999999765543321 3 34577888887 7788
Q ss_pred EEEEeCCCeEEEEeCCCCeEE--E-ecCCCC--CeEEEEEccCCCEEEEeecC
Q 011126 444 FISGSIDGKVRIWEVRRCQVV--D-YTDIRE--IVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 444 l~sgs~Dg~V~IWdl~~~~~~--~-~~~~~~--~I~sv~~spdG~~l~s~s~d 491 (493)
|.+.+.|+.|++||+.+..+- . +.++.. .-..-+.+||+.++++|+.|
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD 338 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC
Confidence 777777999999999875432 1 222211 22334679999999999876
No 166
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=1.5e-15 Score=156.12 Aligned_cols=234 Identities=17% Similarity=0.272 Sum_probs=172.8
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (493)
+..+.+|.++|.|+.|...|.++++|+.|..|+||...+.. +.....||.+.|+.++.+.+..++++++.|..
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------CLASCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------hhccCCCCccccchhccchhhhhhhhcccCce
Confidence 34577899999999999999999999999999999976443 33357899999999999999999999999999
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee---------cc
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL---------LE 378 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---------~~ 378 (493)
|++|.+..+..+..+..+...++.+.|.+-. ..+.+++|.+|+.+..-. .+
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------SSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc--------------------cCCCCCceEeccccccccccCCCCCCccc
Confidence 9999999999999999999888888876654 223444555554430000 00
Q ss_pred c-ce----------------EEEecCCCCEeEEEEeCCC------------eEEEEeCCCeEEEEECCCCcEEEEec-CC
Q 011126 379 K-PL----------------HEFQGHSSEVLDLSWSKNG------------FLLSSSADKTVRLWQVGIDRCLRVFS-HN 428 (493)
Q Consensus 379 ~-~~----------------~~~~~h~~~V~~l~~sp~g------------~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~ 428 (493)
+ .+ .......-.+.+++|...+ +.+++-.+..+.+|++.++..++... |.
T Consensus 316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred ccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence 0 00 0000011122233343333 33444456678899999998888775 99
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEe
Q 011126 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
+++..+.++|.+.++..+++.||+..|||+-.+..++ +......+..-.|++||+.++..
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence 9999999999888999999999999999999887663 22335566777899999887754
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.59 E-value=2.8e-14 Score=130.97 Aligned_cols=199 Identities=19% Similarity=0.288 Sum_probs=142.9
Q ss_pred ecccccceeccCCC-eEEeeecC-------CeEEEEECCCcccc--ccccccceeee-cccCCEEEEEEccCCCEEEEEE
Q 011126 235 IDRHGSATLKPGDH-ELTLGQRM-------RRVRVHPVKKQSRE--LSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGG 303 (493)
Q Consensus 235 ~~~~~~~~fsp~g~-~lasgs~d-------g~V~vwd~~~~~~~--~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs 303 (493)
.+.+..++-+|-.. .|++...+ ..+.||++...... ..++.+...+. .|-+.|.|+.|.|++..||+-.
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 34455566677654 44444331 34789998765443 22333333343 4667999999999999998876
Q ss_pred CCCcEEEEecCCCeee-eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126 304 EDGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 304 ~Dg~V~iWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
|..|.+|++..+..+ ..+...
T Consensus 143 -dn~i~l~~l~ess~~vaev~ss--------------------------------------------------------- 164 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLSS--------------------------------------------------------- 164 (370)
T ss_pred -cCceEEEEcccCcchheeeccc---------------------------------------------------------
Confidence 778999999776542 111110
Q ss_pred EEecCCCCEeEEEEeCC--CeEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 383 EFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 383 ~~~~h~~~V~~l~~sp~--g~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
.-.+|....++-+|+|. +..+....|+++..||+++..+...+. |...|..+.|+|....+|++|+.||.|+|||.
T Consensus 165 ~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~ 244 (370)
T KOG1007|consen 165 ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT 244 (370)
T ss_pred ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEec
Confidence 01124556677889993 445555668999999999998888875 99999999999966678999999999999999
Q ss_pred CCCe--EEEecCCCCCeEEEEEccCC-CEEEEeecC
Q 011126 459 RRCQ--VVDYTDIREIVSAVCYCPDG-KVRQNSACN 491 (493)
Q Consensus 459 ~~~~--~~~~~~~~~~I~sv~~spdG-~~l~s~s~d 491 (493)
+..+ +..+.+|...|++|.|+|-. ++++++++|
T Consensus 245 R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 245 RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred cCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 9654 33689999999999999975 566777766
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6.8e-14 Score=131.29 Aligned_cols=197 Identities=17% Similarity=0.216 Sum_probs=146.3
Q ss_pred CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
..+|++...|.|++||..+.+ ..++|.+|...++.++|.. ..+.+.+|+.||+||+||++.......+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 568999999999999987532 3446889999999999987 4668999999999999999988776666554
Q ss_pred CCCC-ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE-EEecCCCCEeEEEEeCCC--e
Q 011126 326 DTDP-SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKNG--F 401 (493)
Q Consensus 326 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~g--~ 401 (493)
..+. ....+..+-...+++.+. -....+..+++|+.+.... ++. -...|...|++|.|+|.+ +
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~Gt----------E~~~s~A~v~lwDvR~~qq---~l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGT----------ELTRSDASVVLWDVRSEQQ---LLRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred CCCCCcceEeeccCcCCeEEecc----------ccccCceEEEEEEeccccc---hhhhhhhhccCcceeEEecCCCCCe
Confidence 4431 222222222333333332 2234556778888766543 232 245699999999999987 9
Q ss_pred EEEEeCCCeEEEEECCCC----cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 402 LLSSSADKTVRLWQVGID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 402 l~sgs~Dg~V~lWd~~~~----~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
|++|+.||.|.|+|+... ..+.++.|...|.++.|....-..|.+-+..++..+|++..+...
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred EEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 999999999999999754 356777799999999998723346888899999999999987644
No 169
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2e-13 Score=126.62 Aligned_cols=183 Identities=19% Similarity=0.222 Sum_probs=143.3
Q ss_pred ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (493)
Q Consensus 283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 362 (493)
-...|..|+|+|.+..|+.++.||++++||+........++... +..++.|.. ....+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~-plL~c~F~d-----------------~~~~~~G~~ 73 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGA-PLLDCAFAD-----------------ESTIVTGGL 73 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCC-ceeeeeccC-----------------CceEEEecc
Confidence 46789999999999999999999999999998776555554332 222222221 223456667
Q ss_pred CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCC
Q 011126 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD 441 (493)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~ 441 (493)
++.+..++... .+...+..|..+|.||.+++.. .+++|+.|++|++||.+...+...+.....|.|+.. .+
T Consensus 74 dg~vr~~Dln~-----~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g 145 (323)
T KOG1036|consen 74 DGQVRRYDLNT-----GNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SG 145 (323)
T ss_pred CceEEEEEecC-----CcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec---cC
Confidence 77777666543 3345567799999999999865 999999999999999999888888887889999997 56
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEE---EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 442 NYFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 442 ~~l~sgs~Dg~V~IWdl~~~~~~---~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+.|+.|+.|.+|.+||+++.... .....+..+.+|++-|++...++++-+
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie 198 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE 198 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec
Confidence 88999999999999999987644 245677889999999999888888754
No 170
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.55 E-value=1.1e-13 Score=129.03 Aligned_cols=194 Identities=13% Similarity=0.205 Sum_probs=154.0
Q ss_pred ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~ 314 (493)
...+.|.+|++++..+|++.....|.||...+.. .....+++..|...|+.|+|+|..+.|++|+.|..-+||...
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3456678999999999999999999999887554 234556788999999999999999999999999999999873
Q ss_pred CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE
Q 011126 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (493)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (493)
.+.. -+|...+..|....+++
T Consensus 86 ~~~~-----------------------------------------------------------WkptlvLlRiNrAAt~V 106 (361)
T KOG1523|consen 86 SGGT-----------------------------------------------------------WKPTLVLLRINRAATCV 106 (361)
T ss_pred CCCe-----------------------------------------------------------eccceeEEEeccceeeE
Confidence 3221 12334455678899999
Q ss_pred EEeCCC-eEEEEeCCCeEEEEECCCCcEE---EEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC-------
Q 011126 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCL---RVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC------- 461 (493)
Q Consensus 395 ~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~---~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~------- 461 (493)
.|+|.. .+++|+.-+.|.||-+....-- +.+ .+.+.|+++.|+| ++-+|++|+.|++.||+..--.
T Consensus 107 ~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpa 185 (361)
T KOG1523|consen 107 KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPA 185 (361)
T ss_pred eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCC
Confidence 999998 9999999999999987654332 122 2678899999999 9999999999999999975311
Q ss_pred -----------eEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 462 -----------QVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 462 -----------~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+++ .+....+.|..+.|+|+|..|+-.+.|.
T Consensus 186 p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds 228 (361)
T KOG1523|consen 186 PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS 228 (361)
T ss_pred CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC
Confidence 122 2335567899999999999998777664
No 171
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.55 E-value=6.9e-14 Score=140.51 Aligned_cols=256 Identities=20% Similarity=0.267 Sum_probs=164.2
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCC
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDG 306 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg 306 (493)
+....+|.++|-.+.|-|...+|++++.|.++++||++..... ....+.+|++.|.+++|.|. ...+++|+.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg 167 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDG 167 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-----cceeecccccccchhhhccCCCcceeeccCCC
Confidence 4455678888888999998889999999999999999865432 22246899999999999994 55889999999
Q ss_pred cEEEEecCCCee--eeee-----eccCC---CCceEE--------EeeCCCCceeeeeccCccccceeeeecCCCceEEE
Q 011126 307 TVRVWKVIEHER--LDGF-----DVQDT---DPSCLY--------FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVV 368 (493)
Q Consensus 307 ~V~iWdl~~~~~--~~~~-----~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 368 (493)
.|.|||+.-... ...+ ..+.. +..... ....-...+..+.+ +-.......+..|+.+.+
T Consensus 168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKV 244 (720)
T ss_pred cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEE
Confidence 999999854331 0000 00000 000000 00000000001100 111222334456899999
Q ss_pred cCCCceeec--ccc--eEEEecC---CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEecC---CCcEEEEE
Q 011126 369 LPPKVFRLL--EKP--LHEFQGH---SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSH---NNYVTSVA 435 (493)
Q Consensus 369 ~~~~~~~~~--~~~--~~~~~~h---~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~~h---~~~V~~v~ 435 (493)
|+++..... ..+ ...+.-| .-.+.+|.....| +|++.+.|+.|.+|++.+.. ++..+.+ ...-..-.
T Consensus 245 WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~ 324 (720)
T KOG0321|consen 245 WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE 324 (720)
T ss_pred EeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeee
Confidence 998643322 122 2233334 3467788887778 77777779999999998643 3333321 11222335
Q ss_pred EccCCCCEEEEEeCCCeEEEEeCCCCeE--EEecCCCCCeEEEEEccCCC-EEEEeecCC
Q 011126 436 FNPVDDNYFISGSIDGKVRIWEVRRCQV--VDYTDIREIVSAVCYCPDGK-VRQNSACNF 492 (493)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~~~~~~~~~I~sv~~spdG~-~l~s~s~d~ 492 (493)
.+| ++.+|++|+.|..++||.+.+.+. ..+.+|.-.|++++|.|... -+++++.|+
T Consensus 325 lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 325 LSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDF 383 (720)
T ss_pred cCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCc
Confidence 678 999999999999999999998754 35789999999999988642 334445554
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.55 E-value=5.3e-14 Score=140.91 Aligned_cols=160 Identities=14% Similarity=0.297 Sum_probs=122.9
Q ss_pred cccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCC
Q 011126 238 HGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 238 ~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~ 315 (493)
+..+.|.| |...||+++.||.|++|.+...............+.+|...|+.|.|+| ....|+++++|-+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 44467777 4578999999999999999877666556666778999999999999999 566899999999999999976
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
++. ...+.+|++.|.+++
T Consensus 710 ~~~--------------------------------------------------------------~~~l~gHtdqIf~~A 727 (1012)
T KOG1445|consen 710 AKL--------------------------------------------------------------YSRLVGHTDQIFGIA 727 (1012)
T ss_pred hhh--------------------------------------------------------------hheeccCcCceeEEE
Confidence 642 345678999999999
Q ss_pred EeCCC-eEEEEeCCCeEEEEECCCCcE-EEEec--CCCcEEEEEEccCCCCEEEEEeCCC----eEEEEeCCC
Q 011126 396 WSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS--HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRR 460 (493)
Q Consensus 396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~-~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg----~V~IWdl~~ 460 (493)
|+|+| .+++.+.||+|+||.-+++.. +..-. ....-..|.|-- ++++++..+.|. .|.+||..+
T Consensus 728 WSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 728 WSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred ECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhh
Confidence 99999 999999999999999876542 22211 122233455555 777777766653 466666553
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.55 E-value=1.9e-13 Score=124.18 Aligned_cols=241 Identities=14% Similarity=0.172 Sum_probs=151.4
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-cccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
+..|...+.++.|..++. |.+|...|.|++|.+.+..... .+. .|...|+.+.--|++ .|.+-+.|+.+.
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~-------~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP-------LIRLFGRLFITNLQSIPND-SLDTQGRDPLLI 80 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCccch-------hhhhhccceeeceeecCCc-chhhcCCCceEE
Confidence 335667778888888876 8899999999999998655322 244 577889999999984 678899999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCcee--eeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI--PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
+|++..+..+..-....+....+.++........ ....................-.+.+-+. .-.+.
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-----------~~~~K 149 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-----------SERSK 149 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-----------hhccc
Confidence 9999775543332222221111222111111000 0000000000000000000000000000 11234
Q ss_pred CCCEeEEEEeCC-C---eEEEEeCCCeEEEEECCCCcEEEEe-----------cCCCcEEE-------------------
Q 011126 388 SSEVLDLSWSKN-G---FLLSSSADKTVRLWQVGIDRCLRVF-----------SHNNYVTS------------------- 433 (493)
Q Consensus 388 ~~~V~~l~~sp~-g---~l~sgs~Dg~V~lWd~~~~~~~~~~-----------~h~~~V~~------------------- 433 (493)
.+.+.+..|--. + +|++|.++|.|.+||+.++..+..+ .|..+|.+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 566777775433 3 7888999999999999886332221 14444444
Q ss_pred ---------------------------EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEE
Q 011126 434 ---------------------------VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 434 ---------------------------v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l 485 (493)
+.+-| |++++||++.|++||||..++.+.+. +..|...|++++|+||...+
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 44445 99999999999999999999998884 78899999999999999999
Q ss_pred EEeecCC
Q 011126 486 QNSACNF 492 (493)
Q Consensus 486 ~s~s~d~ 492 (493)
+.++.|.
T Consensus 309 AaaskD~ 315 (323)
T KOG0322|consen 309 AAASKDA 315 (323)
T ss_pred hhccCCc
Confidence 9988774
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.54 E-value=5.7e-13 Score=127.65 Aligned_cols=235 Identities=17% Similarity=0.241 Sum_probs=162.2
Q ss_pred cccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccc-------c--ccccccceeeecccCCEEEEEEccCC
Q 011126 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-------E--LSSLYTGQEFLAHEGSILTMKFSLDG 296 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~-------~--~~~~~~~~~l~~H~~~I~~l~fspdg 296 (493)
.....+..|...++.+.|+|+|.+||+|+.+|.|.+|....... . ...+.....+.+|...|+.++|+|++
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~ 135 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS 135 (434)
T ss_pred EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence 34556788999999999999999999999999999998762110 0 01123345678899999999999999
Q ss_pred CEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCC----------CceeeeeccC-----------------
Q 011126 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL----------SQLIPIDVDK----------------- 349 (493)
Q Consensus 297 ~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~----------------- 349 (493)
.++++++.|..+++||+..|+....+..+...+..++|.+-.. .......+..
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 9999999999999999999999888887776665555533211 0011100000
Q ss_pred --ccc----------cceeeeecCCCceEEEcCCCceeec----------------ccceEEEecCCCCEeEEEEeC---
Q 011126 350 --EKI----------DKTKSLRKSSDLTCVVLPPKVFRLL----------------EKPLHEFQGHSSEVLDLSWSK--- 398 (493)
Q Consensus 350 --~~~----------~~~~~~~~s~~~~~~~~~~~~~~~~----------------~~~~~~~~~h~~~V~~l~~sp--- 398 (493)
.+. .......-+.++..++.+.+.++.. ..|+..+.+...++..+.++|
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~ 295 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY 295 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence 000 0011123345566666555444332 244555555566666666665
Q ss_pred ---------------CC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 399 ---------------NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 399 ---------------~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
-+ .+|.++ .+.|.|||.++-.++.... |-..++.++|++ +|.+|+..+.||...+--+..
T Consensus 296 elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 296 ELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcc
Confidence 12 234444 4679999999988888776 899999999999 999999999999877766654
Q ss_pred Ce
Q 011126 461 CQ 462 (493)
Q Consensus 461 ~~ 462 (493)
.+
T Consensus 374 ~e 375 (434)
T KOG1009|consen 374 WE 375 (434)
T ss_pred hh
Confidence 43
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.54 E-value=7.8e-14 Score=130.23 Aligned_cols=221 Identities=16% Similarity=0.259 Sum_probs=151.5
Q ss_pred cCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126 228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (493)
.+.+.+|-..++.+.++|.. +++++++.|..|++|+++...... .+ .-+.+|.+.|.++.|+++|.+|++||.|.
T Consensus 128 ~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~--Vf--GG~egHrdeVLSvD~~~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 128 SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVA--VF--GGVEGHRDEVLSVDFSLDGDRIASCGMDH 203 (385)
T ss_pred ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEE--Ee--cccccccCcEEEEEEcCCCCeeeccCCcc
Confidence 34566777888889999987 577889999999999998665322 11 23578999999999999999999999999
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCC--------cee---eeeccC-----ccccceeeeecCCCceEEEcC
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS--------QLI---PIDVDK-----EKIDKTKSLRKSSDLTCVVLP 370 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~-----~~~~~~~~~~~s~~~~~~~~~ 370 (493)
+|++|++...+....++.. ..+.++... .+. ..+... .....-..+..+.++.++.|.
T Consensus 204 slk~W~l~~~~f~~~lE~s------~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~ 277 (385)
T KOG1034|consen 204 SLKLWRLNVKEFKNKLELS------ITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWK 277 (385)
T ss_pred eEEEEecChhHHhhhhhhh------cccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEe
Confidence 9999999855433222211 000010000 000 000111 111223446777888888887
Q ss_pred CCceee----------cccceEEEecCCCCEeEEEEeC--CC-eEEEEeCCCeEEEEECCCCcEE--EEec---CCCcEE
Q 011126 371 PKVFRL----------LEKPLHEFQGHSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCL--RVFS---HNNYVT 432 (493)
Q Consensus 371 ~~~~~~----------~~~~~~~~~~h~~~V~~l~~sp--~g-~l~sgs~Dg~V~lWd~~~~~~~--~~~~---h~~~V~ 432 (493)
+....- ....+..+.-....|.-|.|.- -+ .|+.|...|.|.+||++...+. .++. -...|.
T Consensus 278 pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR 357 (385)
T KOG1034|consen 278 PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR 357 (385)
T ss_pred cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence 732211 1133455555667777776654 45 8999999999999999876553 2222 456899
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 433 SVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 433 ~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
..+|+. ++.+|+..+.|++|.-||..
T Consensus 358 Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 358 QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999999 99999999999999999864
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.53 E-value=1.7e-13 Score=126.01 Aligned_cols=193 Identities=17% Similarity=0.266 Sum_probs=142.5
Q ss_pred ccceeccCC-----CeEEeeecCCeEEEEECCCc--cccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEE
Q 011126 239 GSATLKPGD-----HELTLGQRMRRVRVHPVKKQ--SRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRV 310 (493)
Q Consensus 239 ~~~~fsp~g-----~~lasgs~dg~V~vwd~~~~--~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~i 310 (493)
+.+.|.|+. .+||+. +..+|+|.+... ...+........-..|..++++..|+. +-++|.+++-|-+..|
T Consensus 100 tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTi 177 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTI 177 (364)
T ss_pred cceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEE
Confidence 335565554 245554 456999998742 222222222222344677999999987 7789999999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
||+.++.. ......+..|...
T Consensus 178 Wdie~~~~-----------------------------------------------------------~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 178 WDIETGVS-----------------------------------------------------------GTVKTQLIAHDKE 198 (364)
T ss_pred EEEeeccc-----------------------------------------------------------cceeeEEEecCcc
Confidence 99977621 0002345679999
Q ss_pred EeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCC-CeEEEEeCCCC--
Q 011126 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRC-- 461 (493)
Q Consensus 391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~D-g~V~IWdl~~~-- 461 (493)
|.+|+|...+ ++++.+.||.||++|++.......+- ...+...++|++++.+|+|+-..| .+|.|.|++..
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 9999999976 99999999999999999876555442 356889999999999999997766 57999999964
Q ss_pred eEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 462 QVVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
-+..+.+|...|++|+|.|....-++.+.|.
T Consensus 279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 279 PVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred ceehhhcCcccccceEecCCCCceeeecCCc
Confidence 3447999999999999999876554444443
No 177
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.53 E-value=1.6e-13 Score=133.20 Aligned_cols=199 Identities=19% Similarity=0.240 Sum_probs=144.6
Q ss_pred cceeeecccCCEEEEEEccCC--CEEEEEECCCcEEEEecCCC----eeeeeeeccCCCCceEEEeeCCCCceeeeeccC
Q 011126 276 TGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWKVIEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349 (493)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg~V~iWdl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (493)
..+.+.-|.+.|++++|+|.. +++|+|..-|+|-+||+.+. ..+..+..+..++.++.|.+.....++..
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss---- 253 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS---- 253 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee----
Confidence 334567799999999999954 58899999999999999522 23445566667788888888877766544
Q ss_pred ccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE-EEEec-
Q 011126 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS- 426 (493)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~-~~~~~- 426 (493)
+.++.+...+...... ..+.........+..+.|+... .++.+..=|...+||++++.. ...+.
T Consensus 254 -----------SyDGtiR~~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 254 -----------SYDGTIRLQDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred -----------ccCceeeeeeecchhh--HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence 3444444433321111 1122222233456677777766 666776667999999998765 33333
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC---e--EEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---Q--VVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~---~--~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
|...|++|+++|....+|||++.|++++|||++.- . .+....|...|.++.|+|+|-.|++.+.|
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC
Confidence 88899999999999999999999999999999842 1 35678899999999999998778887765
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.52 E-value=2.4e-13 Score=125.05 Aligned_cols=191 Identities=13% Similarity=0.240 Sum_probs=131.9
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EEEEEECCCcEEEEecCCCeeeeeeec
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
+-+++.+.+-|.+..|||++... ..+....+-+|...|..|+|...+. .+|+.|.||.||++|++..+....+..
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGV----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred CcceeEeecccCeEEEEEEeecc----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence 34588999999999999998752 1122335789999999999998654 789999999999999987664433332
Q ss_pred cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eE
Q 011126 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FL 402 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l 402 (493)
...+ ...++-+.+..........+ ......+++.+.+ ....|+..+.+|.+.|+.|+|.|.. +|
T Consensus 238 ~p~~----------~~pLlRLswnkqDpnymATf-~~dS~~V~iLDiR---~P~tpva~L~~H~a~VNgIaWaPhS~~hi 303 (364)
T KOG0290|consen 238 DPSP----------STPLLRLSWNKQDPNYMATF-AMDSNKVVILDIR---VPCTPVARLRNHQASVNGIAWAPHSSSHI 303 (364)
T ss_pred CCCC----------CCcceeeccCcCCchHHhhh-hcCCceEEEEEec---CCCcceehhhcCcccccceEecCCCCcee
Confidence 2221 11222222222222111111 1122334444443 2456789999999999999999986 99
Q ss_pred EEEeCCCeEEEEECCCCc------EEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126 403 LSSSADKTVRLWQVGIDR------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (493)
Q Consensus 403 ~sgs~Dg~V~lWd~~~~~------~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I 455 (493)
+|++.|..+.+||+.... ++..+..++.|+.|+|+|..+.+|+.+.. +++.|
T Consensus 304 ctaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 304 CTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred eecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 999999999999997532 23344578899999999988899888754 44444
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=6.8e-14 Score=138.23 Aligned_cols=181 Identities=18% Similarity=0.282 Sum_probs=137.7
Q ss_pred ccccccccC---ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--C
Q 011126 221 KRGWLKKLG---AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--D 295 (493)
Q Consensus 221 k~~w~~~~~---~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--d 295 (493)
...|++++. .+.+|...|+++.|+.+|.+|++|+.|.++.|||.-..+.... .-.+|...|.+++|-| +
T Consensus 33 ~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs------I~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 33 NSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS------ISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred ccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee------eecccccceeEEeeeccCC
Confidence 345555443 5889999999999999999999999999999999874332211 2368999999999999 5
Q ss_pred CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (493)
Q Consensus 296 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (493)
.+++++|..|..|+++|+...+.-.. . .
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~-d-------------------------~-------------------------- 134 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGM-D-------------------------H-------------------------- 134 (758)
T ss_pred CeEEEeccCcceEEEEeccccccccc-c-------------------------c--------------------------
Confidence 66899999999999999865321000 0 0
Q ss_pred ecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-------EEEEec----CCCcEEEEEEccCCCC
Q 011126 376 LLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-------CLRVFS----HNNYVTSVAFNPVDDN 442 (493)
Q Consensus 376 ~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-------~~~~~~----h~~~V~~v~fsp~d~~ 442 (493)
-...+.+.+..|...|..|+-.|++ .+.+++.||+|+-+|++... +...+. .--...|+.++|.+..
T Consensus 135 ~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 135 GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 0012344566799999999999998 89999999999999998532 111111 1235679999999999
Q ss_pred EEEEEeCCCeEEEEeCC
Q 011126 443 YFISGSIDGKVRIWEVR 459 (493)
Q Consensus 443 ~l~sgs~Dg~V~IWdl~ 459 (493)
+|+.|+.|--+++||.+
T Consensus 215 ~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 215 YLAVGGSDPFARLYDRR 231 (758)
T ss_pred eEEecCCCchhhhhhhh
Confidence 99999999999999954
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.3e-13 Score=129.48 Aligned_cols=202 Identities=13% Similarity=0.150 Sum_probs=151.0
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceee-ecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
.+.+|...++++.|+.++++||+|+.|..++||++........ ..+.+.. ..|...|.|++|....++|++|+.+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-CCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4667888899999999999999999999999999864322111 1122222 3466899999999988999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
...|+.+.+.+..+.. ....
T Consensus 130 I~HDiEt~qsi~V~~~------------------------------------------------------------~~~~ 149 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANE------------------------------------------------------------NNNR 149 (609)
T ss_pred Eeeecccceeeeeecc------------------------------------------------------------cCcc
Confidence 9999987764332211 1235
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc-EEEEe---cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~-~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
+.|+.+..+|.. .|++.+.++.|.+||.+..+ .+..+ ........+.|+|....+|++.+..+-+-+||++..+.
T Consensus 150 ~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 150 GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence 688899999977 99999999999999998655 22222 35667889999999999999999999999999987542
Q ss_pred E--E---ecCCCC---CeEEEEEccCCCEEEEeecCC
Q 011126 464 V--D---YTDIRE---IVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 464 ~--~---~~~~~~---~I~sv~~spdG~~l~s~s~d~ 492 (493)
- . ..+... .-.++.|+|+|..+++--..+
T Consensus 230 ~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~ 266 (609)
T KOG4227|consen 230 PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK 266 (609)
T ss_pred hHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence 2 2 222222 235678999998876654443
No 181
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=1.8e-12 Score=118.83 Aligned_cols=152 Identities=20% Similarity=0.440 Sum_probs=108.9
Q ss_pred ceeccCCCeEEeeec----------CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE--ECCCcE
Q 011126 241 ATLKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG--GEDGTV 308 (493)
Q Consensus 241 ~~fsp~g~~lasgs~----------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg--s~Dg~V 308 (493)
+.|+|+|.+|++-.. -+...||.+.........+ .+ .+.++|.+++|+|+|+.||.. ..++.|
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i----~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI----EL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee----ec-cCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 778999988776433 2345666654333222211 11 234579999999999987554 467799
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
.+||+. ++. +..+ +.
T Consensus 86 ~lyd~~-~~~--------------------------------------------------------------i~~~--~~ 100 (194)
T PF08662_consen 86 TLYDVK-GKK--------------------------------------------------------------IFSF--GT 100 (194)
T ss_pred EEEcCc-ccE--------------------------------------------------------------eEee--cC
Confidence 999984 221 2222 24
Q ss_pred CCEeEEEEeCCC-eEEEEeC---CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC------CCeEEEEeC
Q 011126 389 SEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEV 458 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~---Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~------Dg~V~IWdl 458 (493)
..+..|.|+|+| +|++++. .|.|.+||++..+.+..+.|.. ++.++|+| +|++|+++.. |+.++||+.
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcC-CCCEEEEEEeccceeccccEEEEEe
Confidence 567789999999 8887764 3679999999999998888765 78999999 9999999875 788999999
Q ss_pred CCCeEE
Q 011126 459 RRCQVV 464 (493)
Q Consensus 459 ~~~~~~ 464 (493)
....+.
T Consensus 179 ~G~~l~ 184 (194)
T PF08662_consen 179 QGRLLY 184 (194)
T ss_pred cCeEeE
Confidence 654443
No 182
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.4e-12 Score=126.69 Aligned_cols=190 Identities=16% Similarity=0.278 Sum_probs=147.3
Q ss_pred cCCEEEEEEccCCCEEEEEECCCcEEEEecCC--CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecC
Q 011126 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (493)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 361 (493)
.+.|++|.|+|..+.|++|+.|++++||.+.. ...++.+.....++.+..|.+++...++ ..+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~---------------~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIF---------------TSG 277 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEE---------------ecc
Confidence 57899999999999999999999999999853 3456677777777777777776643322 233
Q ss_pred CCceEEEcCCCceeecccceEEEecCC-CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC
Q 011126 362 SDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV 439 (493)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~ 439 (493)
.....+.|+...-.+ .++..+.++. ..+.....+|++ +|+..+..|.|.|....+++.+..++..+.|..++|+.
T Consensus 278 rrky~ysyDle~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS- 354 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS- 354 (514)
T ss_pred cceEEEEeecccccc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-
Confidence 333445555432221 2344444544 356677889998 99999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCC-CCeEEEEEccCCCEEEEeecC
Q 011126 440 DDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR-EIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 440 d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~-~~I~sv~~spdG~~l~s~s~d 491 (493)
++..|++++.+|.|.+||++...++. +.+.. -.-+++|.+++|.+||+|+..
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence 99999999999999999999998875 33322 235788999999999999853
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.50 E-value=1.7e-11 Score=123.47 Aligned_cols=234 Identities=25% Similarity=0.450 Sum_probs=174.3
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEE-ccCCC-EEEEEEC-C
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKF-SLDGQ-YLASGGE-D 305 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~f-spdg~-~Lasgs~-D 305 (493)
....+...+..+.+.+.+..++.++.++.+.+|+........ ..+..+. ..+..+.+ ++++. +++..+. |
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI------KSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE------EEEeccCCCceeeEEEECCCcceEEeccCCCC
Confidence 344566677778999999999999999999999988664111 2344433 37777777 88887 5555455 9
Q ss_pred CcEEEEecCC-CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecC-CCceEEEcCCCceeecccceEE
Q 011126 306 GTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS-SDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 306 g~V~iWdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
+.+++|++.. ......+..+...+..+.+.+... ..+... .++.+.+|+... .+.+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~----~~~~~~ 193 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK----------------LLASGSSLDGTIKLWDLRT----GKPLST 193 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC----------------EEEecCCCCCceEEEEcCC----CceEEe
Confidence 9999999988 676777777766666666655543 111222 366666666654 345677
Q ss_pred EecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEE-Eec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR-VFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~-~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
+.+|...|.+++|+|++ .+++++.|+.|++||...+..+. .+. |...+ -..|+| ++.++++++.|+.+++|++.
T Consensus 194 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeec
Confidence 78899999999999988 44455999999999999888877 454 76664 338999 77899999999999999999
Q ss_pred CCeE-E-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 460 RCQV-V-DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 460 ~~~~-~-~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
.... + ....|...|.++.|.|++..+++++.+
T Consensus 272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC
Confidence 6653 3 345778899999999999998887665
No 184
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=5.5e-13 Score=131.78 Aligned_cols=199 Identities=19% Similarity=0.329 Sum_probs=140.3
Q ss_pred ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCcEEEEecCCCeeeeee
Q 011126 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGF 322 (493)
Q Consensus 244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~V~iWdl~~~~~~~~~ 322 (493)
.|.+--|+.|-..|.|.+.+... .+++.++.... .-.+..|++++|-|.+ ..++.+-.+|.+.+||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~--~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------- 251 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------- 251 (636)
T ss_pred CCCCcceEEeeccCceEEecchh--hHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------
Confidence 56677788888889999888765 33333333222 2235789999999944 4666677899999998621
Q ss_pred eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-e
Q 011126 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~ 401 (493)
......+....+ .....+.+ ..+. ......|+..+.--.+.|+.++|+|+| +
T Consensus 252 ~~~~t~p~~~~~---k~~~~f~i---------------------~t~k---sk~~rNPv~~w~~~~g~in~f~FS~DG~~ 304 (636)
T KOG2394|consen 252 VCGATAPSYQAL---KDGDQFAI---------------------LTSK---SKKTRNPVARWHIGEGSINEFAFSPDGKY 304 (636)
T ss_pred cccCCCCccccc---CCCCeeEE---------------------eeee---ccccCCccceeEeccccccceeEcCCCce
Confidence 111111111110 00000000 0000 001113444444456689999999999 9
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEc
Q 011126 402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC 479 (493)
Q Consensus 402 l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~s 479 (493)
||+.+.||.+||+|..+.+.+..++ .-+...|++|+| |++||++|+.|-.|.||.+..++++. =.+|+..|+.|+|.
T Consensus 305 LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 305 LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999999999999998888876 667899999999 99999999999999999999999996 58999999999999
Q ss_pred c
Q 011126 480 P 480 (493)
Q Consensus 480 p 480 (493)
|
T Consensus 384 p 384 (636)
T KOG2394|consen 384 P 384 (636)
T ss_pred c
Confidence 7
No 185
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=7.2e-13 Score=132.35 Aligned_cols=247 Identities=12% Similarity=0.172 Sum_probs=159.6
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC--EEEEEECCCcE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTV 308 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~V 308 (493)
+.+|.+.+.++..+|.|.+||+|+.||+|+||.+.+..... +++ -.+.|.+|+|+|.+. .||.+-.. .+
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr-------~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR-------TVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE-------EEe-ecceeEEEEecCCCCceeEEEEecC-ce
Confidence 67888999999999999999999999999999987655322 222 356899999999765 45554444 46
Q ss_pred EEEecCCCeeeee---------eec-cCCCCceEEEeeC--------------CCCceeeeeccCccccceeeeecCCCc
Q 011126 309 RVWKVIEHERLDG---------FDV-QDTDPSCLYFTIN--------------HLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (493)
Q Consensus 309 ~iWdl~~~~~~~~---------~~~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~s~~~ 364 (493)
.|-+-.-|..+.. ... .......+.|... +...+..+.+....-+.......+...
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 6665433321111 100 0111111222222 111111122222221222222222233
Q ss_pred eEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCC
Q 011126 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN 442 (493)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~ 442 (493)
.+++.+...-. ....|..-.+.|.++.|+|.. +|+.++. ..|+|||+..+..++.+. ....|..++.+| .|.
T Consensus 547 ~VliHQLSK~~----sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GD 620 (733)
T KOG0650|consen 547 SVLIHQLSKRK----SQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGD 620 (733)
T ss_pred eEEEEeccccc----ccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCC
Confidence 33333332111 112233446778999999998 6666654 679999999877776664 567899999999 999
Q ss_pred EEEEEeCCCeEEEEeCCCC-eEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 443 YFISGSIDGKVRIWEVRRC-QVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 443 ~l~sgs~Dg~V~IWdl~~~-~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.|+.|+.|+++..+|+.-. ++. .+..|...+++|+|++.-.++++++-|.
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg 672 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG 672 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence 9999999999999999855 344 5788999999999999998998888765
No 186
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.2e-12 Score=122.00 Aligned_cols=191 Identities=13% Similarity=0.282 Sum_probs=138.5
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-cccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
++||+.-..+|++..|-.|++|+...... . .++ .-+..|++|+|-|. +..|+.|+..| |.||.....-.
T Consensus 104 ~aWhqH~~~fava~nddvVriy~ksst~p--t------~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSSTCP--T------KLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCCCCC--c------eecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 78899878889999999999998764221 1 111 23567999999995 55788888766 99998643211
Q ss_pred eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC
Q 011126 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 398 (493)
.... +.....+ ...+....|| .+|+.+.|++
T Consensus 175 ~~r~---------~~~~s~~---------------------------------------~~qvl~~pgh-~pVtsmqwn~ 205 (445)
T KOG2139|consen 175 ANRN---------IRMMSTH---------------------------------------HLQVLQDPGH-NPVTSMQWNE 205 (445)
T ss_pred cccc---------ccccccc---------------------------------------chhheeCCCC-ceeeEEEEcC
Confidence 0000 0000000 0012233456 7899999999
Q ss_pred CC-eEEEEe-CCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeEEEecCCCCCeE
Q 011126 399 NG-FLLSSS-ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVS 474 (493)
Q Consensus 399 ~g-~l~sgs-~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~~~~~~~~~~I~ 474 (493)
+| .|++++ .|..|+|||..++.++.... -.+.++-+.|+| |+.+|.++.-|+..++|+.. +.....|.-..+.|.
T Consensus 206 dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvq 284 (445)
T KOG2139|consen 206 DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQ 284 (445)
T ss_pred CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCcee
Confidence 99 777776 56789999999998887763 567788999999 99999999999999999554 445556776777999
Q ss_pred EEEEccCCCEEEEeec
Q 011126 475 AVCYCPDGKVRQNSAC 490 (493)
Q Consensus 475 sv~~spdG~~l~s~s~ 490 (493)
..+|+|+|+.|+.+..
T Consensus 285 tacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACS 300 (445)
T ss_pred eeeecCCCCEEEEEEc
Confidence 9999999998876543
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.45 E-value=5.9e-11 Score=119.53 Aligned_cols=218 Identities=30% Similarity=0.451 Sum_probs=160.1
Q ss_pred ccCCC-eEEeee-cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEEecCCCeeee
Q 011126 244 KPGDH-ELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLD 320 (493)
Q Consensus 244 sp~g~-~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iWdl~~~~~~~ 320 (493)
++++. .++..+ .++.+++|+... .......+..|...|..++|+|++.++++++. |+.+++|++..+..+.
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence 67776 455544 499999999875 12223357889999999999999999998885 9999999999877777
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE-EEecCCCCEeEEEEeCC
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~ 399 (493)
.+..+...+.++.+.+... ........++.+.+|+.. ....+. .+.+|...+ ...|+|+
T Consensus 193 ~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~ 252 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGG---------------LLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPD 252 (466)
T ss_pred eeccCCCceEEEEEcCCcc---------------eEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCC
Confidence 7777666666666663322 111123455555566333 122334 577888875 4489999
Q ss_pred C-eEEEEeCCCeEEEEECCCCcE-EEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe-c--CCCCCe
Q 011126 400 G-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-T--DIREIV 473 (493)
Q Consensus 400 g-~l~sgs~Dg~V~lWd~~~~~~-~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~-~--~~~~~I 473 (493)
+ .+++++.|+.+++|++..... +..+ .|...|.++.|+| ++..+++++.|+.+++|++.+...... . .|...+
T Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (466)
T COG2319 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331 (466)
T ss_pred CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence 8 888999999999999986664 4444 5889999999999 888888899999999999998876643 2 566679
Q ss_pred EEEEEccCCCEEEEe
Q 011126 474 SAVCYCPDGKVRQNS 488 (493)
Q Consensus 474 ~sv~~spdG~~l~s~ 488 (493)
..+.|.+++..++.+
T Consensus 332 ~~~~~~~~~~~~~~~ 346 (466)
T COG2319 332 SSLSFSPDGSLLVSG 346 (466)
T ss_pred EEEEECCCCCEEEEe
Confidence 999994343556555
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.45 E-value=6.3e-12 Score=115.28 Aligned_cols=99 Identities=20% Similarity=0.500 Sum_probs=81.8
Q ss_pred CCCEeEEEEeCCC-eE--EEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCC
Q 011126 388 SSEVLDLSWSKNG-FL--LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRC 461 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l--~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~ 461 (493)
.++|.+++|+|+| .| +.|..++.|.|||++ .+.+..+. ...++.|.|+| +|++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 4579999999998 54 345577899999997 55666664 56788999999 99999998754 67999999999
Q ss_pred eEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 462 QVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+.+....|.. ++.++|+|||++++++++
T Consensus 136 ~~i~~~~~~~-~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 136 KKISTFEHSD-ATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEeeccccCc-EEEEEEcCCCCEEEEEEe
Confidence 8887666654 789999999999999875
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=2.1e-11 Score=115.84 Aligned_cols=177 Identities=18% Similarity=0.301 Sum_probs=136.9
Q ss_pred CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccC-CCCceEEE
Q 011126 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYF 334 (493)
Q Consensus 256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~-~~~~~~~~ 334 (493)
.+.+++.+.++........ ....|.+++++ .+.|+.+-++. |+|||+.+.+.+.++.... .+...+++
T Consensus 67 pr~Lkv~~~Kk~~~ICe~~--------fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEIF--------FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCAL 135 (391)
T ss_pred CceEEEEEcccCceEEEEe--------cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEee
Confidence 3568999888665433211 34679999996 45677777664 9999999999999988763 44446677
Q ss_pred eeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCe-EE
Q 011126 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VR 412 (493)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~-V~ 412 (493)
+++..+..+++.. ....+.+++|+... -+++..+..|.+.+-+|+|+++| +|||++..|+ ||
T Consensus 136 S~n~~n~ylAyp~------------s~t~GdV~l~d~~n----l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR 199 (391)
T KOG2110|consen 136 SPNNANCYLAYPG------------STTSGDVVLFDTIN----LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR 199 (391)
T ss_pred ccCCCCceEEecC------------CCCCceEEEEEccc----ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence 7776655444432 12245666666543 35678889999999999999999 9999999988 78
Q ss_pred EEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 413 LWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 413 lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
|+.+..++.+..|+ ....|.+++|+| +..+|++.+..++|+|+.+.+
T Consensus 200 Vf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 200 VFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecc
Confidence 99999999999997 345689999999 999999999999999999864
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=8.4e-12 Score=129.11 Aligned_cols=186 Identities=16% Similarity=0.200 Sum_probs=124.7
Q ss_pred eeeeecccccceeccCCCeEEeeecC---CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCC
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDG 306 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg 306 (493)
+..+...+...+|+|+|+.|+..+.+ ..|++|++....... ...+.+| ...++|+|||++|+.+. .+|
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-----l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-----VASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-----EecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 34445566779999999999987643 469999987543211 1122334 34689999999888764 688
Q ss_pred cEEEEec--CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 307 TVRVWKV--IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 307 ~V~iWdl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
.+.||.+ .++. ...+
T Consensus 271 ~~~Iy~~d~~~~~---------------------------------------------------------------~~~l 287 (429)
T PRK01742 271 VLNIYVMGANGGT---------------------------------------------------------------PSQL 287 (429)
T ss_pred cEEEEEEECCCCC---------------------------------------------------------------eEee
Confidence 7776643 2221 1122
Q ss_pred ecCCCCEeEEEEeCCC-eEE-EEeCCCeEEEEECCCC-cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 385 QGHSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
..|...+...+|+|+| .|+ ++..++...||++... .....+.+.. .++.|+| ++++|+..+.++ +.+||+.++
T Consensus 288 t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g 363 (429)
T PRK01742 288 TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSG 363 (429)
T ss_pred ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCC
Confidence 3345567789999999 555 4456788888887532 2223334443 4678999 999998887765 566999988
Q ss_pred eEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 462 QVVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+...+.... ...++.|+|||++|+.++.+.
T Consensus 364 ~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 364 STEVLSSTF-LDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred CeEEecCCC-CCCCceECCCCCEEEEEEcCC
Confidence 765443222 346788999999999887654
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=5.6e-13 Score=131.82 Aligned_cols=157 Identities=24% Similarity=0.445 Sum_probs=123.0
Q ss_pred cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccc
Q 011126 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (493)
Q Consensus 274 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (493)
+...++++||++-|+++.|+.+|.+|++|+.|-.+.|||....+.+..+
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI------------------------------- 88 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI------------------------------- 88 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee-------------------------------
Confidence 4455679999999999999999999999999999999998654432221
Q ss_pred ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC---eEEEEeCCCeEEEEECCC----------Cc
Q 011126 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGI----------DR 420 (493)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~----------~~ 420 (493)
-.||...|.++.|-|.. ++++|..|+.|+|+|+.. ..
T Consensus 89 ------------------------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~ 138 (758)
T KOG1310|consen 89 ------------------------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE 138 (758)
T ss_pred ------------------------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccc
Confidence 25799999999999953 999999999999999974 22
Q ss_pred EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-----------EecCCCCCeEEEEEccCC-CEEEE
Q 011126 421 CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----------DYTDIREIVSAVCYCPDG-KVRQN 487 (493)
Q Consensus 421 ~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-----------~~~~~~~~I~sv~~spdG-~~l~s 487 (493)
..+.+. |...|..|+-.|..+..|.+++.||+|+-+|++..... .+....-...++..+|.. .+|++
T Consensus 139 ~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV 218 (758)
T KOG1310|consen 139 TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV 218 (758)
T ss_pred hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe
Confidence 333343 89999999999955599999999999999999863221 122222346788899976 47788
Q ss_pred eecC
Q 011126 488 SACN 491 (493)
Q Consensus 488 ~s~d 491 (493)
|++|
T Consensus 219 Ggsd 222 (758)
T KOG1310|consen 219 GGSD 222 (758)
T ss_pred cCCC
Confidence 8775
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.8e-11 Score=125.33 Aligned_cols=242 Identities=19% Similarity=0.251 Sum_probs=159.9
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC---CEEEEEECCCcEEEEecCCCe
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
..|++|+++++... ...|+||...+.. +...+.+|..+++.+.+.|.. .++++++.||.|++||...+.
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~-------~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGE-------CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHh-------hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 67999999887764 5679999987544 333578999999999998843 478899999999999999999
Q ss_pred eeeeeeccCCCCceEEE------------eeCCCCceeeeeccCccc----------------------cceeeeecCCC
Q 011126 318 RLDGFDVQDTDPSCLYF------------TINHLSQLIPIDVDKEKI----------------------DKTKSLRKSSD 363 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~s~~ 363 (493)
.++++............ .......+........+. ........+..
T Consensus 94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 88887655432222110 000000000000000000 00011111111
Q ss_pred ceEEEcCCCce--eecccce-----EEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC--C--cEEEEec-CCCc
Q 011126 364 LTCVVLPPKVF--RLLEKPL-----HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--D--RCLRVFS-HNNY 430 (493)
Q Consensus 364 ~~~~~~~~~~~--~~~~~~~-----~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~--~--~~~~~~~-h~~~ 430 (493)
...++.....+ ....+.- ..-..|...+++.++||++ +++++..||.|.+|.--. . ...+.+. |.+.
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 11111111111 1111000 0112366678999999999 999999999999996322 1 1223333 9999
Q ss_pred EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
|++++|++ +|.+|++|+..|.+.+|.+.+++..-+.....+|..+.++||+.+.+....|
T Consensus 254 V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 254 VNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred cceeEEec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 99999999 9999999999999999999999977788899999999999999887766544
No 193
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.41 E-value=3.7e-11 Score=112.30 Aligned_cols=234 Identities=13% Similarity=0.149 Sum_probs=158.0
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCcccccc-----ccccceeee-cccCCEEEEEEc-------cCCCEEEEEECCCc
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEFL-AHEGSILTMKFS-------LDGQYLASGGEDGT 307 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~-----~~~~~~~l~-~H~~~I~~l~fs-------pdg~~Lasgs~Dg~ 307 (493)
..|+|||..|++-+.|..+++|++........ ......++. .....|+.-+|- |+..++|+.+.+.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 78999999999999999999999864221111 111111121 123457777775 57789999999999
Q ss_pred EEEEecCCCeeeeeeeccC-----CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCC-Cc---eeecc
Q 011126 308 VRVWKVIEHERLDGFDVQD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP-KV---FRLLE 378 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~---~~~~~ 378 (493)
|++||..+|+....+..-. ....++.|++++...+. .....+.+++. +. .....
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-----------------GykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-----------------GYKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-----------------cccceEEEeeccCCCCCCcchh
Confidence 9999999998876654322 12345566655533222 11222333332 11 01111
Q ss_pred cceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC-CCeEE
Q 011126 379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DGKVR 454 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~ 454 (493)
...+.-.+..+-|.+++|+|.. .++.++...++-||.-..+.++..+. |.+.|+.++|.+ +|+.|.+|.. |-+|-
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKIL 276 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEE
Confidence 1111123457788999999976 89999999999999988888888775 999999999999 9999999886 78999
Q ss_pred EEeCCCCe-EE-EecCCCC---CeEEEEEccCCCEEEEeecCC
Q 011126 455 IWEVRRCQ-VV-DYTDIRE---IVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 455 IWdl~~~~-~~-~~~~~~~---~I~sv~~spdG~~l~s~s~d~ 492 (493)
.||++..+ ++ .+..|.. .-.-....|+|++|++|+.++
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG 319 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence 99999654 33 3333332 222356689999999997653
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.1e-12 Score=121.89 Aligned_cols=156 Identities=25% Similarity=0.313 Sum_probs=128.0
Q ss_pred cceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccce
Q 011126 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (493)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (493)
+.+.+.+|.+-|++|.|+.++++|++|+.|..+++|++......+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------- 92 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------- 92 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------------------------------
Confidence 345678899999999999999999999999999999985422100
Q ss_pred eeeecCCCceEEEcCCCceeecccceEEEe-cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCC---c
Q 011126 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN---Y 430 (493)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~---~ 430 (493)
..||+.... .|...|.||+|...+ .+++|..+++|.+.|+.+.+.+.++.|.+ .
T Consensus 93 ---------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~ 151 (609)
T KOG4227|consen 93 ---------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGD 151 (609)
T ss_pred ---------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccc
Confidence 013343333 366899999999888 99999999999999999999999998776 9
Q ss_pred EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe----EEEecCCCCCeEEEEEccCCCEEEEe
Q 011126 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~----~~~~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
|+.+..+| ..+.|++.+.+|.|.|||++..+ ++..........++.|+|--..|+..
T Consensus 152 VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 152 VYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred eeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 99999999 68999999999999999999765 44556667788999999987655443
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2.4e-12 Score=124.20 Aligned_cols=140 Identities=31% Similarity=0.546 Sum_probs=106.0
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEE
Q 011126 288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367 (493)
Q Consensus 288 ~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 367 (493)
.+++|+++|..|++|+.||++|||++.....+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e--------------------------------------------- 182 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE--------------------------------------------- 182 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh---------------------------------------------
Confidence 78999999999999999999999997655433333
Q ss_pred EcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE-------------------------
Q 011126 368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC------------------------- 421 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~------------------------- 421 (493)
..|...|.+|.|+|+| .|++-+.| ..+||++.++.+
T Consensus 183 -----------------~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~ 244 (398)
T KOG0771|consen 183 -----------------IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQE 244 (398)
T ss_pred -----------------HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCc
Confidence 3455666666666666 66666666 566666654411
Q ss_pred -E--------------------------EEe---cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCC
Q 011126 422 -L--------------------------RVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDI 469 (493)
Q Consensus 422 -~--------------------------~~~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~ 469 (493)
+ +.. .-...|++++.++ +|++++.|+.||.|-|++..+.+.+.+ ..|
T Consensus 245 ~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH 323 (398)
T KOG0771|consen 245 TLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH 323 (398)
T ss_pred eEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhh
Confidence 0 000 0234789999999 999999999999999999999988864 567
Q ss_pred CCCeEEEEEccCCCEEEEeecC
Q 011126 470 REIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 470 ~~~I~sv~~spdG~~l~s~s~d 491 (493)
...|+.+.|+||.++++.-+.+
T Consensus 324 ~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 324 LGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred eeeeeeEEEcCCcCcccccccC
Confidence 8899999999999999876654
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=6.6e-12 Score=132.72 Aligned_cols=230 Identities=14% Similarity=0.210 Sum_probs=155.5
Q ss_pred CCCeEEeeecCCeEEEEECCCcc---ccc-ccccccee-eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQS---REL-SSLYTGQE-FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~---~~~-~~~~~~~~-l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
|..++++|+.||.|+||+--... .++ ..+...+. +.+-.+.=.-+.|.....+|+++|.-..|||||........
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 44578999999999999754322 111 11111111 11112222456788766677777778899999998887776
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC--EeEEEEeC
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE--VLDLSWSK 398 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~sp 398 (493)
.+...... + +..+.. ..........+-.|+.+.+++.+.-.. ...+...+.|+.. |..+.+.+
T Consensus 1202 diP~~s~t--~----------vTaLS~--~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1202 DIPYGSST--L----------VTALSA--DLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred ecccCCCc--c----------ceeecc--cccCCceEEEeecCCceEEeecccCCc-cccceeecccCCcccceeEEeec
Confidence 66554221 1 111111 111233445677788888887765332 2457777888887 99999999
Q ss_pred CC--eEEEEeCCCeEEEEECCCCcEEEEec---C---CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec---
Q 011126 399 NG--FLLSSSADKTVRLWQVGIDRCLRVFS---H---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--- 467 (493)
Q Consensus 399 ~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---h---~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~--- 467 (493)
+| .|++|+.||.|++||++.......+. | ++..+++..++ +..++|+|+. +.|+||++...++-.+.
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCc
Confidence 88 79999999999999999853332222 2 34699999999 9999999998 99999999876544222
Q ss_pred ----CCCCCeEEEEEccCCCEEEEeecCC
Q 011126 468 ----DIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 468 ----~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.....+.+++|||---.+++|+.|.
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCc
Confidence 2234689999999998888887664
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.38 E-value=5.4e-11 Score=127.75 Aligned_cols=236 Identities=11% Similarity=0.096 Sum_probs=149.9
Q ss_pred ccccccccC---ceeeeecccccceec-cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC
Q 011126 221 KRGWLKKLG---AMARIIDRHGSATLK-PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG 296 (493)
Q Consensus 221 k~~w~~~~~---~~~~~~~~~~~~~fs-p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg 296 (493)
..+|..+-. .+..|...+..++.+ +++.++++|+.||+|+||+..+............++..-.+.+.++.+.+.+
T Consensus 1031 ~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1031 PPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 345554322 233344555555554 5559999999999999999987766644444555555567889999999999
Q ss_pred CEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (493)
Q Consensus 297 ~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (493)
+.+|.++.||.|++.++......+..... .........+.++.+............+.......++.|+.+....
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~-----~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQ-----VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeee-----eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 99999999999999998652111000000 0000000011111111111111111233344455667777653222
Q ss_pred cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCC--CEEEEEeC--
Q 011126 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDD--NYFISGSI-- 449 (493)
Q Consensus 377 ~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~--~~l~sgs~-- 449 (493)
.. ........+.|++++.+|.+ ++++|+..|.+.+||++=+.++..+. +..+++.+..+|.-+ ...++++.
T Consensus 1186 ~w--~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1186 AW--RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred HH--hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 11 11122345789999999998 99999999999999999998888876 457888888888544 55555554
Q ss_pred CCeEEEEeCCCCeE
Q 011126 450 DGKVRIWEVRRCQV 463 (493)
Q Consensus 450 Dg~V~IWdl~~~~~ 463 (493)
.+.|.+|++.++..
T Consensus 1264 ~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLR 1277 (1431)
T ss_pred CCceeeeecccCcc
Confidence 68899999998743
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=1e-10 Score=111.25 Aligned_cols=221 Identities=15% Similarity=0.202 Sum_probs=147.1
Q ss_pred cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC--cEEEEecCCCe
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHE 317 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~V~iWdl~~~~ 317 (493)
...|..+...|..|+.+| -++|......+-.. .....-.|..+-|+ ..++|..+.+. .+++.++..+.
T Consensus 10 ~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-------~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-------KDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred eeeeccceeEEEccCCCc-eeEEecCchHHhhc-------ccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence 355888889999999998 57777664433111 11123356677776 44666665543 48888888777
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (493)
.+..+..+.. .+.+..+....++++ ...+++++.+...+... +.....|...+.+++.+
T Consensus 80 ~ICe~~fpt~---IL~VrmNr~RLvV~L-----------------ee~IyIydI~~MklLhT-I~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 80 TICEIFFPTS---ILAVRMNRKRLVVCL-----------------EESIYIYDIKDMKLLHT-IETTPPNPKGLCALSPN 138 (391)
T ss_pred eEEEEecCCc---eEEEEEccceEEEEE-----------------cccEEEEecccceeehh-hhccCCCccceEeeccC
Confidence 6666554422 222222222211111 22355666555443211 12222455667777777
Q ss_pred CCC-eEEE--EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCe-EEEEeCCCCeEEE-ecC--C
Q 011126 398 KNG-FLLS--SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVD-YTD--I 469 (493)
Q Consensus 398 p~g-~l~s--gs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~IWdl~~~~~~~-~~~--~ 469 (493)
+.+ +|+- ...-|.|.|||+.+-+.+..+. |.+.+.|++|+| +|.+|||++..|+ |||+.+.+|+.+. +.. .
T Consensus 139 ~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~ 217 (391)
T KOG2110|consen 139 NANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY 217 (391)
T ss_pred CCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCce
Confidence 776 6663 2346899999999999988887 999999999999 9999999999997 6999999998773 322 2
Q ss_pred CCCeEEEEEccCCCEEEEeecCC
Q 011126 470 REIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 470 ~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
...|.+++|+||+++|.+++...
T Consensus 218 ~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 218 PVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred eeEEEEEEECCCCCeEEEecCCC
Confidence 45689999999999998887643
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=9e-11 Score=105.75 Aligned_cols=188 Identities=14% Similarity=0.208 Sum_probs=136.9
Q ss_pred ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~ 314 (493)
...++++.+.|..+-++.++.|+.++-||++.+. ...++++|++-|.++.--.....+++|++||++||||..
T Consensus 114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred CCccceeEeccCCCcEEEecCCeEEEEEEecCCE-------EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecc
Confidence 3556778889988888888899999999998655 334689999999999985555578899999999999999
Q ss_pred CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC-CCCEeE
Q 011126 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLD 393 (493)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~ 393 (493)
+++.+..+.....+ ..+..| ...|-+
T Consensus 187 t~k~v~~ie~yk~~-----------------------------------------------------~~lRp~~g~wiga 213 (325)
T KOG0649|consen 187 TQKHVSMIEPYKNP-----------------------------------------------------NLLRPDWGKWIGA 213 (325)
T ss_pred ccceeEEeccccCh-----------------------------------------------------hhcCcccCceeEE
Confidence 99987766543221 011223 345777
Q ss_pred EEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCe
Q 011126 394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV 473 (493)
Q Consensus 394 l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I 473 (493)
++.+.+ .|+. +....+.||++++.++..+|.....|.-+.|- ...+++++..+.|.-|.+..--...........
T Consensus 214 la~~ed-WlvC-GgGp~lslwhLrsse~t~vfpipa~v~~v~F~---~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c 288 (325)
T KOG0649|consen 214 LAVNED-WLVC-GGGPKLSLWHLRSSESTCVFPIPARVHLVDFV---DDCVLIGGEGNHVQSYTLNGVLQANIPVESTAC 288 (325)
T ss_pred EeccCc-eEEe-cCCCceeEEeccCCCceEEEecccceeEeeee---cceEEEeccccceeeeeeccEEEEeccCCccce
Confidence 777655 5554 45577999999999999999999999999994 467888888889999988643222333333445
Q ss_pred EEEEEccCCCEEEE
Q 011126 474 SAVCYCPDGKVRQN 487 (493)
Q Consensus 474 ~sv~~spdG~~l~s 487 (493)
++..|+..--.+++
T Consensus 289 ~s~s~~~~p~k~~s 302 (325)
T KOG0649|consen 289 YSASWQTSPIKFIS 302 (325)
T ss_pred eeecccCCceEEEE
Confidence 55555544433333
No 200
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=6.9e-10 Score=103.82 Aligned_cols=177 Identities=13% Similarity=0.209 Sum_probs=123.1
Q ss_pred CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC-CCeeeeeeeccCCCCceEEEe
Q 011126 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQDTDPSCLYFT 335 (493)
Q Consensus 257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~-~~~~~~~~~~~~~~~~~~~~~ 335 (493)
..|.|||-.+... .. ++ ....+|.++++.++ .|++.- .+.|.||... ..+.+..+.....+...+.+.
T Consensus 75 NkviIWDD~k~~~-i~------el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 75 NKVIIWDDLKERC-II------EL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred ceEEEEecccCcE-EE------EE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 5799999443221 11 12 25678999999865 566655 4579999987 556666666655444444444
Q ss_pred eCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCe-EEE
Q 011126 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VRL 413 (493)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~-V~l 413 (493)
+.....++++. +-.-+.+-+.+...... .+...+..|...|.|++.+.+| ++||+|..|| |||
T Consensus 144 ~~~~k~~LafP-------------g~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 144 PTSNKSLLAFP-------------GFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred CCCCceEEEcC-------------CCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 44333332221 11112222222111111 1235678899999999999999 9999999998 899
Q ss_pred EECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 414 WQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 414 Wd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
||..++..+..++ ....|.||+|+| +..+|++.|..|+|+|+.++.
T Consensus 209 Fdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 209 FDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 9999999999997 557899999999 999999999999999999875
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.36 E-value=3.8e-11 Score=121.34 Aligned_cols=210 Identities=17% Similarity=0.218 Sum_probs=138.2
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcc-ccccccccce---------------------------eee
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-RELSSLYTGQ---------------------------EFL 281 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~-~~~~~~~~~~---------------------------~l~ 281 (493)
++.+|.+.+.+++++.+|+.+|+|+.|..|.||+-+-.. ...+.....| ...
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~ 127 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS 127 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH
Confidence 566788999999999999999999999999999864211 0011000000 011
Q ss_pred cc--cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec---cCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126 282 AH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (493)
Q Consensus 282 ~H--~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (493)
.| ...|.+++|..||++|+.|-.||+|.|-+- +++....+.- ...++..+.++++......
T Consensus 128 K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~------------- 193 (1081)
T KOG1538|consen 128 KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRN------------- 193 (1081)
T ss_pred hhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCcc-------------
Confidence 12 235777888889999999999999988864 4444444443 3445556666555421000
Q ss_pred eeecCCCceEEEcCCC--ceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEE
Q 011126 357 SLRKSSDLTCVVLPPK--VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT 432 (493)
Q Consensus 357 ~~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~ 432 (493)
.-..++-|... ...+..+.+..-..-.-...||.+.++| +++.|+.|+.+++|- +.|-.+.+.. ....|+
T Consensus 194 -----di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIW 267 (1081)
T KOG1538|consen 194 -----DILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIW 267 (1081)
T ss_pred -----ceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEE
Confidence 00011112111 1111222222222234456799999999 999999999999996 4566666665 678999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 433 SVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 433 ~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
.++..| ++++++.|+.||+|..|++-.
T Consensus 268 tV~~~P-NsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 268 TVQAKP-NSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEcc-CCceEEEEEccCeeehhhhHH
Confidence 999999 999999999999999999853
No 202
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.36 E-value=3.7e-10 Score=112.82 Aligned_cols=231 Identities=11% Similarity=0.108 Sum_probs=135.3
Q ss_pred cccceeccCCCeEEeee-cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEEecCC
Q 011126 238 HGSATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIE 315 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iWdl~~ 315 (493)
...++++|++++|++++ .++.|.+|++.... .+.. ..... ..+....|.|+|++++|++++. ++.|.+|++.+
T Consensus 37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~l~~---~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-ALTF---AAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CccEEECCCCCEEEEEECCCCcEEEEEECCCC-ceEE---eeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 44589999999887654 58899999986321 1111 11111 2234678999999999888764 88999999964
Q ss_pred Ceee-eeeec--cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee-eccc--ceEEEecCCC
Q 011126 316 HERL-DGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-LLEK--PLHEFQGHSS 389 (493)
Q Consensus 316 ~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~--~~~~~~~h~~ 389 (493)
...+ ..... ....+..+.+.++.. .+ ......+..+.+|+..... +... ....... ..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~-~l--------------~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~ 175 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNR-TL--------------WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GA 175 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCC-EE--------------EEeeCCCCEEEEEEECCCCcccccCCCceecCC-CC
Confidence 3211 11111 111223333332221 11 1222333445555443211 1000 0011111 23
Q ss_pred CEeEEEEeCCC-eEEEEeC-CCeEEEEECCC--Cc--EEEEec-------CCCcEEEEEEccCCCCEEEEEeC-CCeEEE
Q 011126 390 EVLDLSWSKNG-FLLSSSA-DKTVRLWQVGI--DR--CLRVFS-------HNNYVTSVAFNPVDDNYFISGSI-DGKVRI 455 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~-Dg~V~lWd~~~--~~--~~~~~~-------h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~I 455 (493)
....++|+|+| +++++.. +++|.+|++.. +. .+..+. +......+.|+| ++++|+++.. ++.|.+
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISV 254 (330)
T ss_pred CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEE
Confidence 45689999999 6666654 99999999973 22 233322 122344689999 9998888754 789999
Q ss_pred EeCCCCe----EEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 456 WEVRRCQ----VVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 456 Wdl~~~~----~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
|++.... ++...........+.++|||++|++++.
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 9996432 2222222335668999999999998874
No 203
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.1e-10 Score=121.22 Aligned_cols=187 Identities=13% Similarity=0.115 Sum_probs=127.4
Q ss_pred eeeeecccccceeccCCCeEEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCC
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG 306 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg 306 (493)
++.+...+...+|+|+|+.|+..+. +..|.+|++...... .+..+.+.+....|+|||+.|+ +.+.++
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--------~l~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--------LVGNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--------EeecCCCcccCcEECCCCCEEEEEEecCC
Confidence 4445556667899999999888653 468999998754321 2445667788899999999775 556666
Q ss_pred c--EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 307 T--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 307 ~--V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
. |.+||+.++.. ..+
T Consensus 269 ~~~Iy~~d~~~~~~---------------------------------------------------------------~~L 285 (435)
T PRK05137 269 NTDIYTMDLRSGTT---------------------------------------------------------------TRL 285 (435)
T ss_pred CceEEEEECCCCce---------------------------------------------------------------EEc
Confidence 5 55566654432 111
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEe-CC--CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEe
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSS-AD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWE 457 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs-~D--g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWd 457 (493)
..+........|+|+| .|+..+ .+ ..|.+||+..+.......+...+....|+| ++++|+....+ ..|.+||
T Consensus 286 t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 286 TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEE
Confidence 2233344567999999 666554 33 368888987776655444556677889999 99998877654 3688999
Q ss_pred CCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 458 VRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 458 l~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+.++....+.. ...+..+.|+|||+.|+..+.
T Consensus 365 ~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 365 PDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCCceEeccC-CCCCCCCeECCCCCEEEEEEc
Confidence 87665443332 235678899999999887654
No 204
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=9.1e-11 Score=121.62 Aligned_cols=187 Identities=17% Similarity=0.202 Sum_probs=124.9
Q ss_pred eeeeecccccceeccCCCeEEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCC
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG 306 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg 306 (493)
++.+...+...+|+|+|+.|+..+. ...|.+|++...... .+..+.+......|+|||+.|+ +.+.+|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--------LVASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--------EeccCCCCccCceECCCCCEEEEEEeCCC
Confidence 3344445667899999999998763 346999998754421 1233444456789999999775 455555
Q ss_pred --cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 307 --TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 307 --~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
.|++||+.+++.. .+
T Consensus 271 ~~~Iy~~d~~~g~~~---------------------------------------------------------------~l 287 (433)
T PRK04922 271 NPEIYVMDLGSRQLT---------------------------------------------------------------RL 287 (433)
T ss_pred CceEEEEECCCCCeE---------------------------------------------------------------EC
Confidence 4888887655421 11
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEe-CCCe--EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC---eEEEEe
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSS-ADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWE 457 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs-~Dg~--V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~IWd 457 (493)
..|.......+|+|+| .|+..+ .++. |.++++.+++......+......++|+| ++++|+..+.++ .|++||
T Consensus 288 t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d 366 (433)
T PRK04922 288 TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMD 366 (433)
T ss_pred ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEE
Confidence 2233334567999999 666554 4444 6666777766544433445566799999 999988765443 699999
Q ss_pred CCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 458 VRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 458 l~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+.+++...+... .......|+|||+.++..+.
T Consensus 367 ~~~g~~~~Lt~~-~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 367 LSTGSVRTLTPG-SLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CCCCCeEECCCC-CCCCCceECCCCCEEEEEEe
Confidence 998877654432 24556799999999887664
No 205
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.2e-11 Score=114.59 Aligned_cols=170 Identities=20% Similarity=0.307 Sum_probs=132.2
Q ss_pred CEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (493)
Q Consensus 297 ~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (493)
..+|++...|.|++||..+++.+..++.+......+.|..... .-..+..+.++.+.+|+.+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds--------------~h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDS--------------PHGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCC--------------CCeeEEeccCCeEEEEEeecchh
Confidence 5688899999999999999999999998887777666654321 12234677889999999887653
Q ss_pred cccceEEEecCC-CCEeEEEEeCCC-eEEEEe----CCCeEEEEECCCCcE-EEEec--CCCcEEEEEEccCCCCEEEEE
Q 011126 377 LEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRC-LRVFS--HNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 377 ~~~~~~~~~~h~-~~V~~l~~sp~g-~l~sgs----~Dg~V~lWd~~~~~~-~~~~~--h~~~V~~v~fsp~d~~~l~sg 447 (493)
.+...+..|. .+..+++.+-.+ ++++|. .|-.|.+||++..+. +..+. |.+.||+++|+|.+.++|++|
T Consensus 107 --~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 107 --SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred --hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 3445556665 466677766444 666664 467799999998766 66664 999999999999999999999
Q ss_pred eCCCeEEEEeCCCCe----EEEecCCCCCeEEEEEccCC
Q 011126 448 SIDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDG 482 (493)
Q Consensus 448 s~Dg~V~IWdl~~~~----~~~~~~~~~~I~sv~~spdG 482 (493)
|.||.|.|+|+..-. ++....+...|..+.|..++
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 999999999998542 44567788889999999988
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.4e-10 Score=119.97 Aligned_cols=186 Identities=13% Similarity=0.099 Sum_probs=122.0
Q ss_pred eecccccceeccCCCeEEeee---cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCC--c
Q 011126 234 IIDRHGSATLKPGDHELTLGQ---RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDG--T 307 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs---~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg--~ 307 (493)
....+...+|+|+|+.|+..+ ....|.+|++....... +....+.+..+.|+|||++|+.. ..+| .
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------VASFPRHNGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------ccCCCCCcCCeEECCCCCEEEEEEcCCCCcE
Confidence 334555689999999998654 34578999987543211 11122334468999999988754 4455 4
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
|++||+.+++.. .+..+
T Consensus 269 I~~~d~~tg~~~---------------------------------------------------------------~lt~~ 285 (429)
T PRK03629 269 LYVMDLASGQIR---------------------------------------------------------------QVTDG 285 (429)
T ss_pred EEEEECCCCCEE---------------------------------------------------------------EccCC
Confidence 777887654321 11112
Q ss_pred CCCEeEEEEeCCC-eEEEEeC-CCeEEE--EECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCC
Q 011126 388 SSEVLDLSWSKNG-FLLSSSA-DKTVRL--WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRR 460 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~-Dg~V~l--Wd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~ 460 (493)
...+....|+|+| .|+..+. ++...| +|+.++.......+........|+| ++++|+..+.+ ..|++||+.+
T Consensus 286 ~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 286 RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCC
Confidence 3345678999999 6665554 344444 4666665544433555667899999 99998876654 3589999998
Q ss_pred CeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 461 CQVVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++...+... .......|+|||+.|+.++.+.
T Consensus 365 g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 365 GGVQVLTDT-FLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred CCeEEeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence 876655432 2345678999999999887653
No 207
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.33 E-value=6.8e-12 Score=114.18 Aligned_cols=151 Identities=18% Similarity=0.279 Sum_probs=116.9
Q ss_pred eEEeeecCCeEEEEECCCccccccc---cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 249 ELTLGQRMRRVRVHPVKKQSRELSS---LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 249 ~lasgs~dg~V~vwd~~~~~~~~~~---~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
+|++|..+|.|.+||+....+.+.- ......+..|..+|.++.|.+.-..=++|+.+..+.+|.+........+
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~--- 243 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI--- 243 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc---
Confidence 5678899999999999876443321 1122235679999999999886556678888888999987533110000
Q ss_pred CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE
Q 011126 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s 404 (493)
-....-..-.|..+..-|++ ++||
T Consensus 244 -------------------------------------------------------~~e~~lknpGv~gvrIRpD~KIlAT 268 (323)
T KOG0322|consen 244 -------------------------------------------------------RKEITLKNPGVSGVRIRPDGKILAT 268 (323)
T ss_pred -------------------------------------------------------cceEEecCCCccceEEccCCcEEee
Confidence 00011123457788899999 9999
Q ss_pred EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 405 gs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
++-|+.||||..++..++.+++ |.+.|++++|+| +.+++|+++.|++|.+|++
T Consensus 269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999999998 999999999999 8999999999999999987
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.3e-10 Score=119.59 Aligned_cols=249 Identities=17% Similarity=0.253 Sum_probs=148.1
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
..+.+.++||+++++|+|..||+|.||.--.... .-...+.+.-|...|+++.|+++|.+|+|||..|.+.+|.+.+
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~---~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSD---DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEecccccc---ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3366789999999999999999999997654211 1223446778999999999999999999999999999999998
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee-----------------------------eeecCCCceE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK-----------------------------SLRKSSDLTC 366 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~s~~~~~ 366 (493)
++ .+-+.-...++..+.+++++....+.+ ..+.+.... .+.-......
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~--~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVL--EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEe--cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 87 333333333344444443332211111 111110000 0000010111
Q ss_pred EEcCCCce-----eecc-cceEE-----Eec------CCCCEeEEEEeCCC-eEEEEe--------CC--CeEEEEECCC
Q 011126 367 VVLPPKVF-----RLLE-KPLHE-----FQG------HSSEVLDLSWSKNG-FLLSSS--------AD--KTVRLWQVGI 418 (493)
Q Consensus 367 ~~~~~~~~-----~~~~-~~~~~-----~~~------h~~~V~~l~~sp~g-~l~sgs--------~D--g~V~lWd~~~ 418 (493)
.++..+.. .+.. +.+.. ... +.-.++.++.+-.| +++|.- .| -.+++|....
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 11111111 1000 11111 111 22346667777677 777763 23 3477897654
Q ss_pred CcEE----EEe--cCCCcEEEEEEccCCCC-EEEEEeCCCeEEEEeCCCCe------------EEEecCCCCCeEEEEEc
Q 011126 419 DRCL----RVF--SHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQ------------VVDYTDIREIVSAVCYC 479 (493)
Q Consensus 419 ~~~~----~~~--~h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~IWdl~~~~------------~~~~~~~~~~I~sv~~s 479 (493)
...- ..+ .|...+...+|.+.... .+++++.||.++||-+.+-+ .+. ..|+.++++++|+
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~-sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG-SYHKTPITALCFS 518 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee-ccccCcccchhhc
Confidence 3322 222 28776666666542333 89999999999999883221 111 2378899999999
Q ss_pred cCCCEEEEeecC
Q 011126 480 PDGKVRQNSACN 491 (493)
Q Consensus 480 pdG~~l~s~s~d 491 (493)
.||..|+++..+
T Consensus 519 ~dGslla~s~~~ 530 (792)
T KOG1963|consen 519 QDGSLLAVSFDD 530 (792)
T ss_pred CCCcEEEEecCC
Confidence 999999888654
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.32 E-value=2.9e-11 Score=112.98 Aligned_cols=150 Identities=17% Similarity=0.261 Sum_probs=124.7
Q ss_pred ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (493)
Q Consensus 283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 362 (493)
-..+|+|.+|++|+..+|.+-....|.||.....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 356899999999999999999999999998654331
Q ss_pred CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECC-CCc---EEEEecCCCcEEEEEEc
Q 011126 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDR---CLRVFSHNNYVTSVAFN 437 (493)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~-~~~---~~~~~~h~~~V~~v~fs 437 (493)
-++.+++..|...|+.|.|+|.. .|++|+.|..-+||... .++ .+..+.++..+++|.|+
T Consensus 45 ---------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 45 ---------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS 109 (361)
T ss_pred ---------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence 13467788899999999999998 99999999999999984 333 23444699999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCeEE-----EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 438 PVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 438 p~d~~~l~sgs~Dg~V~IWdl~~~~~~-----~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
| .++.||+|+.-..|.||-+....-- .-..+...|+++.|+|++-.|++|++|+
T Consensus 110 P-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 110 P-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred C-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 9 9999999999999999987644311 1245678899999999999999999885
No 210
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.1e-10 Score=118.55 Aligned_cols=188 Identities=20% Similarity=0.213 Sum_probs=123.4
Q ss_pred eeecccccceeccCCCeEEeeecC---CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCCcE
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTV 308 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~V 308 (493)
.+...+...+|+|+|+.|+..+.. ..|.+|++...... .+....+.+....|+|||+.|+ +.+.+|..
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--------VVANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 344556678999999999886643 45999998755421 1223345567899999999886 56778887
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
.||.+..... ....+..|.
T Consensus 265 ~Iy~~d~~~~-------------------------------------------------------------~~~~lt~~~ 283 (427)
T PRK02889 265 QIYTVNADGS-------------------------------------------------------------GLRRLTQSS 283 (427)
T ss_pred eEEEEECCCC-------------------------------------------------------------CcEECCCCC
Confidence 7776521100 011122233
Q ss_pred CCEeEEEEeCCC-eEEEEe-CCCeEEEEEC--CCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC---eEEEEeCCCC
Q 011126 389 SEVLDLSWSKNG-FLLSSS-ADKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRC 461 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~--~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~IWdl~~~ 461 (493)
.......|+|+| .|+..+ .++...||.+ .++................|+| ++++|+..+.++ .|++||+.++
T Consensus 284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCC
Confidence 344567899999 555444 4566666654 4444333332344455789999 999998777654 6999999988
Q ss_pred eEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 462 QVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+...+... .......|+|||+.|+.++.+
T Consensus 363 ~~~~lt~~-~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 363 QVTALTDT-TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred CeEEccCC-CCccCceECCCCCEEEEEEec
Confidence 77655433 334678999999999887643
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.28 E-value=1.1e-09 Score=109.51 Aligned_cols=217 Identities=13% Similarity=0.168 Sum_probs=125.8
Q ss_pred EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecCC-Cee--eeeeecc
Q 011126 250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIE-HER--LDGFDVQ 325 (493)
Q Consensus 250 lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~~-~~~--~~~~~~~ 325 (493)
.++...++.|.+|++... ..+ ...+.+. +.+....|.++|++++|++++ .++.|.+|++.. +.. +......
T Consensus 5 y~~~~~~~~I~~~~~~~~-g~l---~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE-GAL---TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred EEEcCCCCCEEEEEECCC-Cce---eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC
Confidence 344467899999999532 111 1222333 345677899999999987765 578899999973 322 1222111
Q ss_pred CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-E
Q 011126 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-L 403 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~ 403 (493)
..+..+.+.+++. .++... ..++.+.+|+........+.+..+. +......++++|++ ++ +
T Consensus 80 -~~p~~i~~~~~g~-~l~v~~--------------~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 80 -GSPTHISTDHQGR-FLFSAS--------------YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred -CCceEEEECCCCC-EEEEEE--------------cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEE
Confidence 1223333333221 111111 1233344443321111111222222 23446778999998 55 5
Q ss_pred EEeCCCeEEEEECCCCcEEE-------EecCCCcEEEEEEccCCCCEEEEEeC-CCeEEEEeCCC--CeE--EE-ecCC-
Q 011126 404 SSSADKTVRLWQVGIDRCLR-------VFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR--CQV--VD-YTDI- 469 (493)
Q Consensus 404 sgs~Dg~V~lWd~~~~~~~~-------~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~~--~~~--~~-~~~~- 469 (493)
+...++.|.+||+.+...+. ..........+.|+| ++++|+++.. +++|.+|++.. +++ +. ...+
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 66677999999997643221 112344567899999 9999888776 89999999973 332 21 1111
Q ss_pred -----CCCeEEEEEccCCCEEEEee
Q 011126 470 -----REIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 470 -----~~~I~sv~~spdG~~l~s~s 489 (493)
......+.++|||++++++.
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEec
Confidence 11234688999999999874
No 212
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.28 E-value=2.1e-12 Score=133.29 Aligned_cols=150 Identities=27% Similarity=0.522 Sum_probs=120.2
Q ss_pred cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccc
Q 011126 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (493)
Q Consensus 274 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (493)
....+.+.+|..+|+|+.|...|.++++|+.|..|+||...++.+
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~----------------------------------- 224 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC----------------------------------- 224 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-----------------------------------
Confidence 334456789999999999999999999999999999999766553
Q ss_pred ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcE
Q 011126 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV 431 (493)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V 431 (493)
+....||.+.|++++.+.++ ++++++.|..|++|.+.++.++.++. |++.|
T Consensus 225 ---------------------------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgav 277 (1113)
T KOG0644|consen 225 ---------------------------LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAV 277 (1113)
T ss_pred ---------------------------hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccce
Confidence 34457899999999999998 99999999999999999999998885 99999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe------cCCCCCeEEEEEccCCCEEEEeecC
Q 011126 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY------TDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 432 ~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~------~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
++|+|+| +.+.+.||++++||.+ .....+ .....-+-++.|...|.-+++++.+
T Consensus 278 taiafsP-----~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 278 TAIAFSP-----RASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred eeeccCc-----cccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999 4588899999999998 111111 1222345556666666666665543
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=2.2e-10 Score=121.49 Aligned_cols=239 Identities=15% Similarity=0.223 Sum_probs=148.2
Q ss_pred ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcEEEEecCCC
Q 011126 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
..+.|+|-...++++....+|+|||+++... +..+... ......|+.|.+-. |..+|++|+.||.||||+-...
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~---~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNG---AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCce-eccccCC---CCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 3478999999999999889999999987653 2221111 12345789999866 5568999999999999974221
Q ss_pred e-eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEE
Q 011126 317 E-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL 394 (493)
Q Consensus 317 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l 394 (493)
. ....+...-...........+.+ +.+++.... ...+..+.-..+.+|+...-. .++.+ .+-..-|+.+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~--~v~dWqQ~~---G~Ll~tGd~r~IRIWDa~~E~----~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTG--LVVDWQQQS---GHLLVTGDVRSIRIWDAHKEQ----VVADIPYGSSTLVTAL 1214 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCC--eeeehhhhC---CeEEecCCeeEEEEEecccce----eEeecccCCCccceee
Confidence 1 11111111111111111111212 112221111 112233335566777664321 12222 2344566766
Q ss_pred EEeCC-C-eEEEEeCCCeEEEEECCCCcE---EEEec-CCCc--EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--
Q 011126 395 SWSKN-G-FLLSSSADKTVRLWQVGIDRC---LRVFS-HNNY--VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-- 464 (493)
Q Consensus 395 ~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~---~~~~~-h~~~--V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-- 464 (493)
.-+-. | ++++|..||.|++||.+.... +...+ |++. |..+.+.+..-..|++|+.||.|++||++.....
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc
Confidence 54433 4 999999999999999986543 33443 7777 9999999833345999999999999999984322
Q ss_pred -EecCC---CCCeEEEEEccCCCEEEEeec
Q 011126 465 -DYTDI---REIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 465 -~~~~~---~~~I~sv~~spdG~~l~s~s~ 490 (493)
....| ...++++..|++..++++|+.
T Consensus 1295 ~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ceeeeccccCccceeeeeccCCCeeeecCc
Confidence 22222 335999999999999999985
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.27 E-value=4.6e-11 Score=118.37 Aligned_cols=167 Identities=23% Similarity=0.408 Sum_probs=121.5
Q ss_pred cccccceeccCCC-eEEeeecCCeEEEEECCCcccc----ccccccc-----------------eeeecccCCEEEEEEc
Q 011126 236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRE----LSSLYTG-----------------QEFLAHEGSILTMKFS 293 (493)
Q Consensus 236 ~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~----~~~~~~~-----------------~~l~~H~~~I~~l~fs 293 (493)
..+.++.|-|.+. .++++..+|.+.+++..-.... ...+... ..+.--++.|+..+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 5566788877664 5566778999999975321110 0011000 1122234579999999
Q ss_pred cCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc
Q 011126 294 LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV 373 (493)
Q Consensus 294 pdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (493)
|||++||+.+.||.+||+|..+.+.+..+
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~m--------------------------------------------------- 328 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVM--------------------------------------------------- 328 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHH---------------------------------------------------
Confidence 99999999999999999998765532221
Q ss_pred eeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccC------------
Q 011126 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV------------ 439 (493)
Q Consensus 374 ~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~------------ 439 (493)
+.--+..+|++|+||| +|++|++|.-|.||.+..++.+..-. |..+|+.|+|.|-
T Consensus 329 -----------kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~ 397 (636)
T KOG2394|consen 329 -----------KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSG 397 (636)
T ss_pred -----------HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccccccc
Confidence 2234678999999999 99999999999999999988887754 9999999999841
Q ss_pred ----------------------C-------------CCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 440 ----------------------D-------------DNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 440 ----------------------d-------------~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
+ ...|.+.+.|-.+.+||+..-.+.
T Consensus 398 ~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 398 MDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred ccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 0 124778889999999999754433
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=8e-10 Score=114.68 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=117.3
Q ss_pred CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC---CCcEEEEecCCCeeeeeeeccCCCCceE
Q 011126 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCL 332 (493)
Q Consensus 256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~V~iWdl~~~~~~~~~~~~~~~~~~~ 332 (493)
...|.++|..... .+.+..|...+...+|+|||+.|+..+. +..|.+||+.+++..
T Consensus 181 ~~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~------------- 239 (435)
T PRK05137 181 IKRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE------------- 239 (435)
T ss_pred ceEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-------------
Confidence 3478888875332 2245678889999999999999888764 467999998766421
Q ss_pred EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCCCe
Q 011126 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKT 410 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~Dg~ 410 (493)
.+..+.+.+...+|+|+| .| ++.+.++.
T Consensus 240 --------------------------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 240 --------------------------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred --------------------------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 111233455678999999 44 56666655
Q ss_pred --EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-C--CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEE
Q 011126 411 --VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-D--GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 411 --V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-D--g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l 485 (493)
|.+||+.++.......+....+...|+| +++.|+..+. + ..|++||+.+++...+......+....|+|||+.|
T Consensus 270 ~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 270 TDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred ceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence 7777998887765555666778899999 9998887764 3 36899999887776655555567778999999999
Q ss_pred EEee
Q 011126 486 QNSA 489 (493)
Q Consensus 486 ~s~s 489 (493)
+...
T Consensus 349 a~~~ 352 (435)
T PRK05137 349 AFTK 352 (435)
T ss_pred EEEE
Confidence 8765
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=6.5e-10 Score=106.58 Aligned_cols=224 Identities=12% Similarity=0.168 Sum_probs=158.6
Q ss_pred CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EEEEEECC--CcEEEEecCCCeeeeeee
Q 011126 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGED--GTVRVWKVIEHERLDGFD 323 (493)
Q Consensus 247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~D--g~V~iWdl~~~~~~~~~~ 323 (493)
...|++|-.+|.+.+|..+.....-+.+ ..+..| ..+..|.-++... .+|+||.. ..+.|||+...+++..-+
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l---~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKL---IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccc---eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence 3467788899999999987443221111 122223 5677777777555 55668888 789999999886665554
Q ss_pred ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE
Q 011126 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL 402 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l 402 (493)
........+....-.... .+-. ......++..+.-..+.+|+++. ..+|+..+.--..+|+++..-|.+ .+
T Consensus 191 NvpnD~L~LrVPvW~tdi----~Fl~-g~~~~~fat~T~~hqvR~YDt~~---qRRPV~~fd~~E~~is~~~l~p~gn~I 262 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDI----RFLE-GSPNYKFATITRYHQVRLYDTRH---QRRPVAQFDFLENPISSTGLTPSGNFI 262 (412)
T ss_pred CCCCccccceeeeeeccc----eecC-CCCCceEEEEecceeEEEecCcc---cCcceeEeccccCcceeeeecCCCcEE
Confidence 443332222211111000 0000 11134445556666777777763 357888888888999999999999 99
Q ss_pred EEEeCCCeEEEEECCCCcEEEE-ec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEcc
Q 011126 403 LSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (493)
Q Consensus 403 ~sgs~Dg~V~lWd~~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~sp 480 (493)
++|..-+.+..+|++.+..+.. ++ ..+.|.+|..+| ...++++++.|..|||+|+.+.+++.....+..++.|-+.+
T Consensus 263 y~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 263 YTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred EEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecC
Confidence 9999999999999999998877 44 788999999999 88999999999999999999988887666777788888876
Q ss_pred CCC
Q 011126 481 DGK 483 (493)
Q Consensus 481 dG~ 483 (493)
+-.
T Consensus 342 ~~n 344 (412)
T KOG3881|consen 342 DVN 344 (412)
T ss_pred Ccc
Confidence 543
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.7e-10 Score=115.16 Aligned_cols=102 Identities=12% Similarity=0.253 Sum_probs=84.2
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
...|++|.|+.+| .++.|...|.|.|||+++.+++..-.|. -+|..+.|.+.++.--+.......++|||-.+|+..
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPM 307 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCce
Confidence 3459999999999 9999999999999999999998887764 588999998843333333345678999999999999
Q ss_pred EecCCCCCeEEEEEccCCCEEEEee
Q 011126 465 DYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
........++.+|+-|++-.++++-
T Consensus 308 asiEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 308 ASIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred eeccccCCcCceeeecCCceEEEec
Confidence 8777777899999999987777664
No 218
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.25 E-value=8.9e-10 Score=113.71 Aligned_cols=182 Identities=17% Similarity=0.218 Sum_probs=123.5
Q ss_pred ccccceeccCCCeEEeeecC---CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCC--cEEE
Q 011126 237 RHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TVRV 310 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg--~V~i 310 (493)
.+....|+|+|++|+..... ..|++|++.+.... .+..+.+.+.+++|+|||+.|+. .+.++ .|++
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 34557899999999887643 47999998754321 12335566778999999997764 44444 4777
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
|++.++... .+..+...
T Consensus 263 ~d~~~~~~~---------------------------------------------------------------~l~~~~~~ 279 (417)
T TIGR02800 263 MDLDGKQLT---------------------------------------------------------------RLTNGPGI 279 (417)
T ss_pred EECCCCCEE---------------------------------------------------------------ECCCCCCC
Confidence 777554321 01112222
Q ss_pred EeEEEEeCCC-eEEEEeC-CC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC---eEEEEeCCCCeE
Q 011126 391 VLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQV 463 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~-Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~IWdl~~~~~ 463 (493)
.....|+|+| .|+..+. .+ .|.+||+.+++......+...+..+.|+| ++++|+.++.++ .|.+||+.++..
T Consensus 280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 3456789998 6655443 33 58888888777655544667788899999 999999888776 899999988765
Q ss_pred EEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 464 VDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 464 ~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
..+... .......|+|||+.|+.++.+
T Consensus 359 ~~l~~~-~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 359 RVLTDT-GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred EEccCC-CCCCCceECCCCCEEEEEEeC
Confidence 544332 234556899999998877654
No 219
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.22 E-value=1.2e-10 Score=115.35 Aligned_cols=193 Identities=16% Similarity=0.238 Sum_probs=125.5
Q ss_pred cccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecC
Q 011126 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (493)
Q Consensus 282 ~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 361 (493)
.|...|.++.|+.+...+.+++.+-.+.-|++.+ .....+..+........+ +.......++. .-.++..+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h-------~~~rs~~~g~~-~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMH-------LGGRSSGGGKG-SDTLLICS 82 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccc-hhhhhhhCCcccCCcccc-------ccccccCCCCC-cceEEEEc
Confidence 4677788999998877776665554444455533 323333332221111111 01111111111 11222334
Q ss_pred CCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC----------------------
Q 011126 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---------------------- 418 (493)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~---------------------- 418 (493)
.|+...+.... .+.-.....|.+.|.+-.|+|+| -|+|++.||.|++|.-..
T Consensus 83 ~DGkf~il~k~-----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S 157 (737)
T KOG1524|consen 83 NDGRFVILNKS-----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNS 157 (737)
T ss_pred CCceEEEeccc-----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCC
Confidence 45554444321 12234567899999999999999 999999999999997321
Q ss_pred C-------------------cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEc
Q 011126 419 D-------------------RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479 (493)
Q Consensus 419 ~-------------------~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~s 479 (493)
. +.++--.|.+-|.++.|+| ..+++++|+.|-+.+|||-....+.....|..+|++++|+
T Consensus 158 ~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~n 236 (737)
T KOG1524|consen 158 NSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFN 236 (737)
T ss_pred CceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeec
Confidence 0 0111123999999999999 8999999999999999999888788888999999999999
Q ss_pred cCCCEEEEeec
Q 011126 480 PDGKVRQNSAC 490 (493)
Q Consensus 480 pdG~~l~s~s~ 490 (493)
|| +.++.++.
T Consensus 237 pd-~~~~v~S~ 246 (737)
T KOG1524|consen 237 PE-KDYLLWSY 246 (737)
T ss_pred cc-cceeeeee
Confidence 99 66666553
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=5e-10 Score=115.95 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=110.0
Q ss_pred CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCCCeeeeeeeccCCCCceE
Q 011126 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL 332 (493)
Q Consensus 256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~~~~~~~~~~~~~~~~~~ 332 (493)
+..|.|||...... +.+..|...|...+|+|||++|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------------ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------------ 242 (429)
T ss_pred eEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------------
Confidence 57899999865431 2456788899999999999999887754 369999987654211
Q ss_pred EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEE-eCCCe
Q 011126 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADKT 410 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sg-s~Dg~ 410 (493)
+..+.+|. ..++|+|+| .|+.+ ..++.
T Consensus 243 ------------------------------------------------l~~~~g~~---~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 243 ------------------------------------------------VASFRGHN---GAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ------------------------------------------------EecCCCcc---CceeECCCCCEEEEEEecCCc
Confidence 11122232 357999999 66655 46787
Q ss_pred EEEE--ECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCC--CCeEEEecCCCCCeEEEEEccCCCEE
Q 011126 411 VRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 411 V~lW--d~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~--~~~~~~~~~~~~~I~sv~~spdG~~l 485 (493)
+.|| |+.++.......+...+....|+| +++.|+..+ .+|..+||++. ++..... .+.. ..+.|+|||++|
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTL 347 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEE
Confidence 6555 666666555445667788999999 898777655 57888888764 3333222 3332 457899999999
Q ss_pred EEeec
Q 011126 486 QNSAC 490 (493)
Q Consensus 486 ~s~s~ 490 (493)
+..+.
T Consensus 348 a~~~~ 352 (429)
T PRK01742 348 VMING 352 (429)
T ss_pred EEEcC
Confidence 87754
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.19 E-value=4.7e-11 Score=116.41 Aligned_cols=215 Identities=16% Similarity=0.160 Sum_probs=139.7
Q ss_pred cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe--
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-- 317 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~-- 317 (493)
.+.++.+|.+|+.|+.-|.|..+|+.+....+. +. -...|.++.|-.+.+++|.+ ....+.|||-..-+
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E-------i~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElH 204 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE-------IN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELH 204 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeee-------ee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEe
Confidence 367889999999999999999999886553221 11 23457777777777777665 34567777743222
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (493)
+++.... +..+.|.+.+ +.....+..+.+...+... .+.+..+....+.+..++-+
T Consensus 205 Clk~~~~----v~rLeFLPyH----------------fLL~~~~~~G~L~Y~DVS~----GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 205 CLKRHIR----VARLEFLPYH----------------FLLVAASEAGFLKYQDVST----GKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred ehhhcCc----hhhhcccchh----------------heeeecccCCceEEEeech----hhhhHHHHccCCccchhhcC
Confidence 2222110 0011111111 0001111111111111111 12233444456778888889
Q ss_pred CCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEE
Q 011126 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475 (493)
Q Consensus 398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~s 475 (493)
|-+ .+-+|...|+|.+|......++..+ .|.++|.+|++.| +|+|+||.+.|..|+|||+++...+.....+-+...
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ 339 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASN 339 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCCccc
Confidence 988 9999999999999999988776555 5999999999999 999999999999999999998765433333667788
Q ss_pred EEEccCCCEEEEe
Q 011126 476 VCYCPDGKVRQNS 488 (493)
Q Consensus 476 v~~spdG~~l~s~ 488 (493)
+++|.-|.+.++-
T Consensus 340 ls~SqkglLA~~~ 352 (545)
T KOG1272|consen 340 LSLSQKGLLALSY 352 (545)
T ss_pred cccccccceeeec
Confidence 8898888655443
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=3.1e-09 Score=109.90 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=112.1
Q ss_pred CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC---CCcEEEEecCCCeeeeeeeccCCCCceEE
Q 011126 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (493)
Q Consensus 257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~ 333 (493)
..|.++|...... +.+..+...+...+|+|||+.|+..+. +..|.+|++.+++...
T Consensus 179 ~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ------------- 237 (429)
T ss_pred eeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------
Confidence 4688888764431 134456778999999999999886543 3468888886654211
Q ss_pred EeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE-EEeCCC--
Q 011126 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK-- 409 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~-sgs~Dg-- 409 (493)
+..+.+| +..++|+|+| .|+ +.+.++
T Consensus 238 -----------------------------------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 238 -----------------------------------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred -----------------------------------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCc
Confidence 1111222 3357899999 555 444454
Q ss_pred eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-C--eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEE
Q 011126 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~ 486 (493)
.|.+||+.++.......+...+....|+| +++.|+..+.+ + .|+++|+.+++...+..........+|+|||++|+
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 58899999887766655666788999999 99988877754 3 46666787776665544445567789999999998
Q ss_pred Eeec
Q 011126 487 NSAC 490 (493)
Q Consensus 487 s~s~ 490 (493)
..+.
T Consensus 347 ~~~~ 350 (429)
T PRK03629 347 MVSS 350 (429)
T ss_pred EEEc
Confidence 7654
No 223
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.17 E-value=1.8e-09 Score=112.36 Aligned_cols=214 Identities=18% Similarity=0.227 Sum_probs=140.0
Q ss_pred CeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeee--eeeeccCCCCceEE
Q 011126 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERL--DGFDVQDTDPSCLY 333 (493)
Q Consensus 257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~--~~~~~~~~~~~~~~ 333 (493)
+.+.||+++....... ...-...|.+++|+| +..+||.|.++|.|.+||+..+... ..+...
T Consensus 222 ~~~~vW~~~~p~~Pe~-------~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~-------- 286 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPEL-------VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL-------- 286 (555)
T ss_pred ceEEEEecCCCCCceE-------EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc--------
Confidence 4799999986532211 223467899999999 6778899999999999999877652 211111
Q ss_pred EeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeeccc--ceEEEe------cCCCCEeEEEEeCCC--eEE
Q 011126 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK--PLHEFQ------GHSSEVLDLSWSKNG--FLL 403 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~------~h~~~V~~l~~sp~g--~l~ 403 (493)
...+...+..+-+...... ..++..+.|+.+..|..+....... +..... .....+++++|.+.. .++
T Consensus 287 -~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 287 -EVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred -cccCCcCeEEEEEeccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 1111112222222222222 4456677799999997765544211 111111 224478999999977 899
Q ss_pred EEeCCCeEEEE---ECCCCc-----EEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeEE-EecCCCCC
Q 011126 404 SSSADKTVRLW---QVGIDR-----CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVV-DYTDIREI 472 (493)
Q Consensus 404 sgs~Dg~V~lW---d~~~~~-----~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~~-~~~~~~~~ 472 (493)
.|+.+|.|.-= +.+... .+..+ .|.++|+++.++|....+|++++ |.+|+||... ...++ .+..+...
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~ 443 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDY 443 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccce
Confidence 99999998872 222222 11122 38999999999997777777777 9999999987 55554 56677777
Q ss_pred eEEEEEccCCCEEEEe
Q 011126 473 VSAVCYCPDGKVRQNS 488 (493)
Q Consensus 473 I~sv~~spdG~~l~s~ 488 (493)
|++++|||-..-+...
T Consensus 444 v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFAT 459 (555)
T ss_pred eeeeEEcCcCceEEEE
Confidence 9999999987654433
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=4.8e-10 Score=105.73 Aligned_cols=224 Identities=20% Similarity=0.368 Sum_probs=143.3
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc------------CCEEEEEEccCCC--EE
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YL 299 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~L 299 (493)
..+.+.++.|...|.+||+|..+|+|.++........ ......+++.|. ..|+.|.|.++++ .+
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 4467778999999999999999999999987654431 111222445554 4689999998654 56
Q ss_pred EEEECCCcEEEEecCCCeeee-eeeccCCCCceEEEeeCCCCceeeeeccCccccceee-eecCCCceEEEcCCCceeec
Q 011126 300 ASGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS-LRKSSDLTCVVLPPKVFRLL 377 (493)
Q Consensus 300 asgs~Dg~V~iWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~ 377 (493)
+..+.|.+|++|.+....... .+..+... . ...+..... ..+..+..+.
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~---------~----------~~~~~~lr~p~~~~~~~~ve---------- 152 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEG---------P----------PGTITSLRLPVEGRHDLEVE---------- 152 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccC---------C----------CCccceeeceeeccccceee----------
Confidence 667789999999986544322 11111000 0 000000000 0011111111
Q ss_pred ccceEEE-ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCC-CcEEEEec--------CCCcEEEEEEccCCCCEEEEE
Q 011126 378 EKPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS--------HNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 378 ~~~~~~~-~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~-~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sg 447 (493)
..|.+.+ .+|.-.|.+|+++.++..+....|=.|.||++.- .++..... .+.-|++..|+|...++|+-.
T Consensus 153 a~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 153 ASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred eeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence 1222222 3588899999999999444455688999999873 33322221 234689999999889999999
Q ss_pred eCCCeEEEEeCCCCeEE-------E----------ecCCCCCeEEEEEccCCCEEEEe
Q 011126 448 SIDGKVRIWEVRRCQVV-------D----------YTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 448 s~Dg~V~IWdl~~~~~~-------~----------~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
+..|+|++-|++...+. . +...-..|..+.|+++|+|+++-
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR 290 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR 290 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe
Confidence 99999999999954322 1 11223458899999999999864
No 225
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=4.5e-10 Score=119.32 Aligned_cols=150 Identities=23% Similarity=0.401 Sum_probs=125.1
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
+-++++.-++++|+.-+.|.+|+........ .+.+|.+.|..+.|+.||+++++.+.|.++|+|++.+.+...
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG 211 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcc-------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence 4567888899999999999999987333222 478999999999999999999999999999999998765321
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 400 (493)
...-+|+..|..+.|.|+
T Consensus 212 -------------------------------------------------------------~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 212 -------------------------------------------------------------CTGFGHSARVWACCFLPN- 229 (967)
T ss_pred -------------------------------------------------------------cccccccceeEEEEeccc-
Confidence 123579999999999999
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEec-C-CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFS-H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~-h-~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
.++|++.|-+.++|+....+.. .+. | ...|..++..+ +.-.++|++.||.+++|++...
T Consensus 230 ~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence 9999999999999976654443 443 4 46799999999 8889999999999999998753
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.14 E-value=1.1e-08 Score=95.89 Aligned_cols=213 Identities=17% Similarity=0.262 Sum_probs=127.8
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC--CEEEEEEccCCCEEEE-EECC------CcEEEE
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG--SILTMKFSLDGQYLAS-GGED------GTVRVW 311 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~--~I~~l~fspdg~~Las-gs~D------g~V~iW 311 (493)
++|+.|...+++|..+| .+||+.+.-..... -+-+.+ .+..|-| .-++||- ||.+ ..|.||
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~-------r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESAS-------RQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhh-------hccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 88999999999998877 89999886332221 111222 2333333 2345543 4333 469999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee--c--ccceEEEecC
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL--L--EKPLHEFQGH 387 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--~--~~~~~~~~~h 387 (493)
|=....++.++.... ++..+.+.. +..+++...+++-. . -+.++.+..-
T Consensus 81 DD~k~~~i~el~f~~-~I~~V~l~r--------------------------~riVvvl~~~I~VytF~~n~k~l~~~et~ 133 (346)
T KOG2111|consen 81 DDLKERCIIELSFNS-EIKAVKLRR--------------------------DRIVVVLENKIYVYTFPDNPKLLHVIETR 133 (346)
T ss_pred ecccCcEEEEEEecc-ceeeEEEcC--------------------------CeEEEEecCeEEEEEcCCChhheeeeecc
Confidence 955555555544322 122222211 11111111111110 0 1122222221
Q ss_pred --CCCEeEEEEeCCC-eEE-EEeCCCeEEEEECCCCcE---EEEecCCCcEEEEEEccCCCCEEEEEeCCCe-EEEEeCC
Q 011126 388 --SSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVR 459 (493)
Q Consensus 388 --~~~V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~IWdl~ 459 (493)
...+.+++-..+. +|+ -|-.-|.|+|-|+...+. .....|.+.|.|++.+- +|.++||+|..|+ |||||..
T Consensus 134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcC
Confidence 1223333222222 443 344669999999986655 55556999999999999 9999999999997 7999999
Q ss_pred CCeEEE-e--cCCCCCeEEEEEccCCCEEEEeecC
Q 011126 460 RCQVVD-Y--TDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 460 ~~~~~~-~--~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
++..+. + ......|.+++|+||..+|++++.-
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 998774 3 2345679999999999999988754
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=3.1e-09 Score=110.18 Aligned_cols=161 Identities=20% Similarity=0.156 Sum_probs=111.9
Q ss_pred CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCCCeeeeeeeccCCCCceEE
Q 011126 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (493)
Q Consensus 257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~~~~~~~~~~~~~~~~~~~ 333 (493)
..|.+||..... .+.+..|...+...+|+|||++|+..+.+ ..|++||+.+++...
T Consensus 184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~------------- 242 (433)
T PRK04922 184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL------------- 242 (433)
T ss_pred EEEEEECCCCCC--------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------
Confidence 468888875332 12355677889999999999999887743 368899986654211
Q ss_pred EeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCCC--
Q 011126 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADK-- 409 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~Dg-- 409 (493)
+..+.+....++|+|+| .| ++.+.++
T Consensus 243 --------------------------------------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 243 --------------------------------------------------VASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred --------------------------------------------------eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 01112223467899999 44 4556555
Q ss_pred eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-CCe--EEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEE
Q 011126 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGK--VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~--V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~ 486 (493)
.|.+||+.++.......+......++|+| ++++|+..+. +|. |+++|+.+++...+.........++|+|||++|+
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred eEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 59999999887665545655667899999 9998887764 444 7777887777655443334455789999999998
Q ss_pred Eee
Q 011126 487 NSA 489 (493)
Q Consensus 487 s~s 489 (493)
..+
T Consensus 352 ~~~ 354 (433)
T PRK04922 352 MVH 354 (433)
T ss_pred EEE
Confidence 764
No 228
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.13 E-value=1.9e-09 Score=101.21 Aligned_cols=180 Identities=18% Similarity=0.267 Sum_probs=126.2
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEEecCCCeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEHERL 319 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iWdl~~~~~~ 319 (493)
.+|+|+|+++|+.+.. ++.|.|..+-+ ..|.+. .-+.|.-|.|..|.-+++.+ ..|+.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq-------~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQ-------LHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhh-------HHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 6799999999999877 88888876432 111111 24568889999988776654 67889999998655421
Q ss_pred eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
..+.....++..++|+|+
T Consensus 85 --------------------------------------------------------------ckIdeg~agls~~~WSPd 102 (447)
T KOG4497|consen 85 --------------------------------------------------------------CKIDEGQAGLSSISWSPD 102 (447)
T ss_pred --------------------------------------------------------------EEeccCCCcceeeeECCC
Confidence 222334667889999999
Q ss_pred C--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC--------------------------
Q 011126 400 G--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-------------------------- 451 (493)
Q Consensus 400 g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg-------------------------- 451 (493)
| +|.+...|-.|.||.+.+..+...-.....+..++|+| ++++.+..+.-.
T Consensus 103 grhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl 181 (447)
T KOG4497|consen 103 GRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL 181 (447)
T ss_pred cceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence 9 77888899999999999988876655555678899999 898887766421
Q ss_pred ----------eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 452 ----------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 452 ----------~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.+.|||---.-.+......-.+..++|+|.+++|++|+.|.
T Consensus 182 tgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 182 TGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred cCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccch
Confidence 12233321111111111224688899999999999999873
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=2.3e-09 Score=107.25 Aligned_cols=200 Identities=20% Similarity=0.238 Sum_probs=127.3
Q ss_pred cccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeec--------cCccc
Q 011126 282 AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV--------DKEKI 352 (493)
Q Consensus 282 ~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 352 (493)
.|....+.|..+|||+|| |+|-+--.|++||+..-.....-......+. +....+..+.++.+.. ..+..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~-feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVD-FEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccccccee-EEEeccchhhheEeecCceeeehhhcCee
Confidence 477888999999999976 6677888999999976654333222222221 1111111111111110 01111
Q ss_pred cceeeee---------cCCCceEEEcCCCceeec---ccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC
Q 011126 353 DKTKSLR---------KSSDLTCVVLPPKVFRLL---EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID 419 (493)
Q Consensus 353 ~~~~~~~---------~s~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~ 419 (493)
..+.... .+.+..+.-....++++. +..+..+....+.++++..++-. +|++|+.+|.|-.||.++.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 1111111 111112222222233322 12344555567889999999976 9999999999999999988
Q ss_pred cEEEEec-------CCC-----cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC--CCeEEEEEccCCC
Q 011126 420 RCLRVFS-------HNN-----YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGK 483 (493)
Q Consensus 420 ~~~~~~~-------h~~-----~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~--~~I~sv~~spdG~ 483 (493)
..+.++. |.. .|+++.|+. +|-.+++|+.+|.|.|||+++.+++....|. -+|..+.|.+.+.
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 7777664 222 399999998 8999999999999999999999888766664 4789999977643
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=3.9e-09 Score=100.31 Aligned_cols=188 Identities=16% Similarity=0.259 Sum_probs=126.0
Q ss_pred cccccceeccCC-CeEEeeecCCeEEEEECCCcccccc-----ccccceee--ecccCCEEEEEEccCCCEEEEEEC-CC
Q 011126 236 DRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEF--LAHEGSILTMKFSLDGQYLASGGE-DG 306 (493)
Q Consensus 236 ~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~-----~~~~~~~l--~~H~~~I~~l~fspdg~~Lasgs~-Dg 306 (493)
..+.+++|.|.+ +-|++|+..| |.||........-. .....+.+ .+| ..|+.|+|++||..|++++. |.
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 456678999865 4677777655 89998754322111 11112222 345 68999999999999999885 57
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
.|+|||..++..+... ..
T Consensus 219 si~iWdpdtg~~~pL~--------------------------------------------------------------~~ 236 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLI--------------------------------------------------------------PK 236 (445)
T ss_pred eEEEEcCCCCCccccc--------------------------------------------------------------cc
Confidence 8999999887643211 11
Q ss_pred CCCCEeEEEEeCCC-eEEEEeCCCeEEEEEC-CCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC--CC-
Q 011126 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RC- 461 (493)
Q Consensus 387 h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~-~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~--~~- 461 (493)
..+.+.-+.|||+| +|+++.-|+..+||+. ++..+.+..-..+.|+..+|+| +|++|+-... |.-++|.+. ..
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~ 314 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGED 314 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCC
Confidence 24567889999999 9999999999999954 4445555444666999999999 8876654432 223344432 10
Q ss_pred ------------eEE-Ee---------cCCCCCeEEEEEccCCCEEEEee
Q 011126 462 ------------QVV-DY---------TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 462 ------------~~~-~~---------~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.++ .+ .-..+.+.+++|.|.|.+|++.-
T Consensus 315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 011 11 11245789999999999999763
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=4.8e-10 Score=110.09 Aligned_cols=257 Identities=19% Similarity=0.260 Sum_probs=162.0
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECC
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGED 305 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~D 305 (493)
..++..|...++.+.|...|..|++|+.|.+|.+||+......+. -..+|...|...+|-| +.+-|++++.|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------f~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS------FESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc------cccccccchhhhhccCCCCCcCceecccc
Confidence 345667888888899999999999999999999999987665443 1357888888888888 34578888888
Q ss_pred CcEEEEecCCCeee---eeeeccCCCCceEEEeeCCCCceeeeeccCc----------------------c---------
Q 011126 306 GTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKE----------------------K--------- 351 (493)
Q Consensus 306 g~V~iWdl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~--------- 351 (493)
|.|++=.+.....+ ..+..+...+..++.-+.....++....+.. +
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 88888766433221 2222333333333333332222221111100 0
Q ss_pred ---ccceeeeecCCCceEEEcCCCceeecc--cceEEEe------cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC-
Q 011126 352 ---IDKTKSLRKSSDLTCVVLPPKVFRLLE--KPLHEFQ------GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI- 418 (493)
Q Consensus 352 ---~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~------~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~- 418 (493)
.....+..+..+....+++.+.+.... .++..+. ...-.|++++|+.++ -|+++..|-.|+++.-..
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 000111223333334444443322211 1122222 223479999999887 778888889999995432
Q ss_pred -C----------cEEEE-ec-CC--CcEEEEEE-ccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccC
Q 011126 419 -D----------RCLRV-FS-HN--NYVTSVAF-NPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPD 481 (493)
Q Consensus 419 -~----------~~~~~-~~-h~--~~V~~v~f-sp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spd 481 (493)
+ ..++. ++ |. ..|.++.| -| ...|+++|+.-|.|.||+-.+++++. +.+....|++|.=+|-
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH 447 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC
Confidence 2 11222 32 43 35777776 46 78999999999999999999999885 4455558999999999
Q ss_pred CCEEEEeecC
Q 011126 482 GKVRQNSACN 491 (493)
Q Consensus 482 G~~l~s~s~d 491 (493)
-.+|+++|=|
T Consensus 448 ~PvLAsSGid 457 (559)
T KOG1334|consen 448 LPVLASSGID 457 (559)
T ss_pred CchhhccCCc
Confidence 8899888754
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=9.7e-09 Score=106.50 Aligned_cols=184 Identities=20% Similarity=0.203 Sum_probs=116.6
Q ss_pred eecccccceeccCCCeEEeeecC---CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCC--c
Q 011126 234 IIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG--T 307 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg--~ 307 (493)
+...+....|+|+|+.|+..+.. ..|.+|++....... +....+.+....|+|||++|+ +...+| .
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 33445568999999999876533 368888987543221 122233455789999999886 444555 4
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
|++||+.+++.. .+..+
T Consensus 269 Iy~~d~~~~~~~---------------------------------------------------------------~lt~~ 285 (430)
T PRK00178 269 IYVMDLASRQLS---------------------------------------------------------------RVTNH 285 (430)
T ss_pred EEEEECCCCCeE---------------------------------------------------------------EcccC
Confidence 666677654321 11112
Q ss_pred CCCEeEEEEeCCC-eEEEEe-CCC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-C--eEEEEeCCC
Q 011126 388 SSEVLDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRR 460 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs-~Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~IWdl~~ 460 (493)
........|+|+| .|+..+ .++ .|.++++.+++...............|+| ++++|+..+.+ + .|.+||+.+
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCC
Confidence 2334456899998 554443 333 57777887776544332333445678999 99988877653 3 588999998
Q ss_pred CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 461 CQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
++...+... .......|+|||+.++.++.
T Consensus 365 g~~~~lt~~-~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 365 GSVRILTDT-SLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCEEEccCC-CCCCCceECCCCCEEEEEEe
Confidence 876554332 22235689999999987654
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.11 E-value=9.4e-09 Score=106.10 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=114.6
Q ss_pred CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCCCeeeeeeeccCCCCceE
Q 011126 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL 332 (493)
Q Consensus 256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~~~~~~~~~~~~~~~~~~ 332 (493)
...|.++|..... .+.+..+...+...+|+|||++|+.+..+ ..|++||+.+++...
T Consensus 169 ~~~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~------------ 228 (417)
T TIGR02800 169 RYELQVADYDGAN--------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK------------ 228 (417)
T ss_pred cceEEEEcCCCCC--------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE------------
Confidence 3457777764322 12355577789999999999999887654 478999987654211
Q ss_pred EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCCC-
Q 011126 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADK- 409 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~Dg- 409 (493)
+..+...+..++|+|+| .| ++.+.++
T Consensus 229 ---------------------------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 229 ---------------------------------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred ---------------------------------------------------eecCCCCccceEECCCCCEEEEEECCCCC
Confidence 11123345568899998 44 4555444
Q ss_pred -eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-C--eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEE
Q 011126 410 -TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 410 -~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l 485 (493)
.|.+||+.++.......+........|+| +++.|+..+.. + .|++||+.+++...+..+...+..+.|+|||+++
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEE
Confidence 58899998877655555555566789999 99988776643 3 6888999888776665556677889999999999
Q ss_pred EEeecC
Q 011126 486 QNSACN 491 (493)
Q Consensus 486 ~s~s~d 491 (493)
+.++.+
T Consensus 337 ~~~~~~ 342 (417)
T TIGR02800 337 AFVHRE 342 (417)
T ss_pred EEEEcc
Confidence 887654
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=5.1e-09 Score=111.49 Aligned_cols=188 Identities=17% Similarity=0.238 Sum_probs=141.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCce
Q 011126 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (493)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 365 (493)
.|....+.-+..+++.+..+..+.+||...+.....+........ .....-...........++.-+.
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l------------~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL------------YSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEE------------EeEEEEeccCcEEEEEecccccc
Confidence 344455555677888888889999999987776555544322111 11111122233445556777778
Q ss_pred EEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEE--EecCCCcEEEEEEccCCCC
Q 011126 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDN 442 (493)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~--~~~h~~~V~~v~fsp~d~~ 442 (493)
+++|... ...+|. .+.||.+.|..+.|+.+| ++++.|+|.++|+|++.+.+.+. .|.|+..|+.++|.| +
T Consensus 157 iivW~~~---~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n-- 229 (967)
T KOG0974|consen 157 IIVWKPH---EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N-- 229 (967)
T ss_pred EEEEecc---ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--
Confidence 8888776 223334 689999999999999999 99999999999999999988765 567999999999998 4
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEecCCC-CCeEEEEEccCCCEEEEeecCC
Q 011126 443 YFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 443 ~l~sgs~Dg~V~IWdl~~~~~~~~~~~~-~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+++|++.|-+.++|+....++..+..|. ..|+.+...++...+++++.|.
T Consensus 230 ~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence 9999999999999988776666666664 4699999999999999988764
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.3e-08 Score=102.60 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=90.8
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
.+|.+.|.++.|+.+- .|.+++.|+.+..|+......++.+. ....+.+++.+| |+..+++++ +.|++||+.+++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~ke 175 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKE 175 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCce
Confidence 3589999999998875 99999999999999999999999887 667789999999 899999875 569999999999
Q ss_pred EE-EecCCCCCeEEEEEccC-----CCEEEEee
Q 011126 463 VV-DYTDIREIVSAVCYCPD-----GKVRQNSA 489 (493)
Q Consensus 463 ~~-~~~~~~~~I~sv~~spd-----G~~l~s~s 489 (493)
++ .+.+|.++|.+++|.-+ |++++++.
T Consensus 176 vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 176 VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred EEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence 88 68999999999999988 88887664
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.07 E-value=1.8e-08 Score=94.80 Aligned_cols=103 Identities=10% Similarity=0.180 Sum_probs=83.4
Q ss_pred CCCEeEEEEeCCC-eEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 388 SSEVLDLSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs--~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
...+.-++|+++. +++|-. .-+.+-|||++..+....+-...+|....|+| ....|+.+.....+++|......++
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEE
Confidence 3456789999999 666553 23679999999888877777888999999999 5555666666778999999988888
Q ss_pred EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 465 DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
......-.|..++|..+|..++..+.|
T Consensus 397 ~vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 397 GVPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred ecCCCCceeeeEEecCCCcEEEEEcCC
Confidence 777777889999999999998877765
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=2.1e-08 Score=104.26 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=113.2
Q ss_pred eecccccceeccCCCeEEeeecC-C--eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCCc--
Q 011126 234 IIDRHGSATLKPGDHELTLGQRM-R--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGT-- 307 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~d-g--~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~-- 307 (493)
....+....|+|||+.|+..+.. + .|.+|++....... +....+......|+|||+.|+. ...+|.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------VTSFPGINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------ecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 33455568999999999876542 3 58888876543211 1111223346899999997764 556665
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
|.+||+.+++. ..+..+
T Consensus 288 Iy~~dl~tg~~---------------------------------------------------------------~~lt~~ 304 (448)
T PRK04792 288 IYVVDIATKAL---------------------------------------------------------------TRITRH 304 (448)
T ss_pred EEEEECCCCCe---------------------------------------------------------------EECccC
Confidence 55556544431 111122
Q ss_pred CCCEeEEEEeCCC-eEE-EEeCCC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-C--eEEEEeCCC
Q 011126 388 SSEVLDLSWSKNG-FLL-SSSADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRR 460 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~-sgs~Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~IWdl~~ 460 (493)
.......+|+|+| .|+ +...++ .|.++|+.+++...............|+| ++++|+..+.+ + .|.++|+.+
T Consensus 305 ~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 305 RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCC
Confidence 3344567899998 554 443344 46666787776544332333445679999 89888776553 3 566788888
Q ss_pred CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 461 CQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
++...+.... ......|+|||+.|+.++.
T Consensus 384 g~~~~lt~~~-~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 384 GAMQVLTSTR-LDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CCeEEccCCC-CCCCceECCCCCEEEEEEe
Confidence 8765443322 2234589999999887654
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=1.5e-08 Score=104.83 Aligned_cols=162 Identities=19% Similarity=0.191 Sum_probs=104.2
Q ss_pred CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCCCeeeeeeeccCCCCceEE
Q 011126 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (493)
Q Consensus 257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~~~~~~~~~~~~~~~~~~~ 333 (493)
..|.++|..... .+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG~~--------~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------- 234 (427)
T PRK02889 176 YQLQISDADGQN--------AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------- 234 (427)
T ss_pred cEEEEECCCCCC--------ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------
Confidence 457777764322 12345677889999999999999887643 359999987664311
Q ss_pred EeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCCCeE
Q 011126 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTV 411 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~Dg~V 411 (493)
+....+.+...+|+|+| .| ++.+.++..
T Consensus 235 --------------------------------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 235 --------------------------------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred --------------------------------------------------eecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 01112334578999999 55 467778876
Q ss_pred EEEE--CCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-CCeEEEE--eCCCCeEEEecCCCCCeEEEEEccCCCEEE
Q 011126 412 RLWQ--VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIW--EVRRCQVVDYTDIREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 412 ~lWd--~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IW--dl~~~~~~~~~~~~~~I~sv~~spdG~~l~ 486 (493)
.||. +..+.......+...++...|+| |++.|+..+. +|...|| ++.+++...............|+|||++|+
T Consensus 265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred eEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 6665 44444333333555667889999 9998876654 4555555 445555443332233345688999999998
Q ss_pred Eeec
Q 011126 487 NSAC 490 (493)
Q Consensus 487 s~s~ 490 (493)
..+.
T Consensus 344 ~~s~ 347 (427)
T PRK02889 344 YISR 347 (427)
T ss_pred EEEc
Confidence 7654
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.06 E-value=4e-08 Score=99.12 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=119.8
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecCCC
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEH 316 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~~~ 316 (493)
+..+.|+|||+++.+.+.||.|.++|+...+. ..++... .....+++++||++++++. ..+.|.|+|..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-------v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-------VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-------EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccE-------EEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence 34478999999999999999999999986552 2234333 3467899999999998765 6899999999999
Q ss_pred eeeeeeeccCCCC-----ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 317 ERLDGFDVQDTDP-----SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 317 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
+.++.+....... ....+...+....+.++... .+.+.+.+.... ..............
T Consensus 111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-------------~~~I~vVdy~d~---~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-------------TGEIWVVDYSDP---KNLKVTTIKVGRFP 174 (369)
T ss_dssp -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-------------TTEEEEEETTTS---SCEEEEEEE--TTE
T ss_pred cceeecccccccccccCCCceeEEecCCCCEEEEEEcc-------------CCeEEEEEeccc---cccceeeecccccc
Confidence 9888876543221 11122112222211111111 011111110000 00011111223344
Q ss_pred eEEEEeCCC-eE-EEEeCCCeEEEEECCCCc-------------------------------------------------
Q 011126 392 LDLSWSKNG-FL-LSSSADKTVRLWQVGIDR------------------------------------------------- 420 (493)
Q Consensus 392 ~~l~~sp~g-~l-~sgs~Dg~V~lWd~~~~~------------------------------------------------- 420 (493)
.+..|.|++ ++ ++....+.|-++|..+++
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 556666666 33 333444555555555443
Q ss_pred ------EEEEecCCCcEEEEEEccCCCCEEEEE----eCCCeEEEEeCCCCeEEEecC--CCCCeEEEEEccCCCEEEEe
Q 011126 421 ------CLRVFSHNNYVTSVAFNPVDDNYFISG----SIDGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 421 ------~~~~~~h~~~V~~v~fsp~d~~~l~sg----s~Dg~V~IWdl~~~~~~~~~~--~~~~I~sv~~spdG~~l~s~ 488 (493)
.++.+...+.-.-+..+| +++++.+. ...++|.|+|.++.+++.... ....+..+.|++||+.+.++
T Consensus 255 d~~~wkvv~~I~~~G~glFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS 333 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGGLFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVS 333 (369)
T ss_dssp TTTBTSEEEEEE-SSSS--EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred hhhcCeEEEEEECCCCcceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence 333333222224567788 88888887 445899999999998775322 22348999999999988776
Q ss_pred ec
Q 011126 489 AC 490 (493)
Q Consensus 489 s~ 490 (493)
..
T Consensus 334 ~~ 335 (369)
T PF02239_consen 334 VW 335 (369)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 240
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.9e-10 Score=112.88 Aligned_cols=180 Identities=16% Similarity=0.249 Sum_probs=133.2
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (493)
+...++|...+..++--.+.+-+++++.|++|++|.++....+..+..+.-++++|+.+|..+.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 445677888887766555667789999999999999988777666666667889999999999999998888876 889
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
|++||.--+..+..+.... -.+.
T Consensus 806 iHlWDPFigr~Laq~~dap---------------------------------------------------------k~~a 828 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAP---------------------------------------------------------KEGA 828 (1034)
T ss_pred ceeecccccchhHhhhcCc---------------------------------------------------------ccCC
Confidence 9999976554432211100 0111
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
.+.|.++.--... +++.++...+|+++|.+.......++ ....+.+++..| .|+.++.+-..|.|.+.|.++
T Consensus 829 ~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 829 GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred CceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC
Confidence 2233333211111 45555889999999999887766654 346789999999 999999999999999999999
Q ss_pred CeEEE-ec
Q 011126 461 CQVVD-YT 467 (493)
Q Consensus 461 ~~~~~-~~ 467 (493)
|+++. |.
T Consensus 908 G~vINswr 915 (1034)
T KOG4190|consen 908 GKVINSWR 915 (1034)
T ss_pred CceeccCC
Confidence 99874 44
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=1.4e-08 Score=94.13 Aligned_cols=213 Identities=15% Similarity=0.204 Sum_probs=135.9
Q ss_pred cCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc---CCC-EEEEEECCCcEEEEecCCCeeeeeeeccCCCCc
Q 011126 255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330 (493)
Q Consensus 255 ~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~ 330 (493)
..|.+.+|++...... .+...| ..-+..+..|.|.- +|. .|+-+-.+|.|.++..........+......
T Consensus 44 R~Gkl~Lys~~d~~~~--~l~~~q--~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~-- 117 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLS--PLDTLQ--CTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK-- 117 (339)
T ss_pred eccceEEEeecccccC--ccceee--eecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh--
Confidence 4577888888755422 221211 12345688888864 555 5677778899999987654433333221110
Q ss_pred eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCC
Q 011126 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD 408 (493)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~D 408 (493)
..... ..+.+++...... .+.....+.+.+.......+ +.++..+.|.-.+....|+... ++.+|+.|
T Consensus 118 --ki~~~---~~lslD~~~~~~~---i~vs~s~G~~~~v~~t~~~l--e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD 187 (339)
T KOG0280|consen 118 --KISVV---EALSLDISTSGTK---IFVSDSRGSISGVYETEMVL--EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD 187 (339)
T ss_pred --hhhhe---eeeEEEeeccCce---EEEEcCCCcEEEEecceeee--eecccccccceeeeeeecccCCCceEEecCCC
Confidence 00000 0111122111111 22222233333222222221 3356778899999999998765 89999999
Q ss_pred CeEEEEECC-CCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeEEEecCCCCCeEEEEEccCCC
Q 011126 409 KTVRLWQVG-IDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVSAVCYCPDGK 483 (493)
Q Consensus 409 g~V~lWd~~-~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~~~~~~~~~~I~sv~~spdG~ 483 (493)
+.+..||++ .++++..- .|...|.+|.-+|..+.+++||+.|-.|++||.+ -++++.-....+.|+.++++|.-.
T Consensus 188 ~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 188 GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 999999999 44444332 2899999999999789999999999999999999 578887777778999999999644
No 242
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.1e-09 Score=121.49 Aligned_cols=199 Identities=16% Similarity=0.289 Sum_probs=141.4
Q ss_pred eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
..+.+.+.++.-||...+.++|+.||.|++|.......... .. .+....|+.+.|+.+|+.+..+..||.+.+|
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~----~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC----FR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE----ee--ccCcchhhhhhhcccCCceeeeccCCceeec
Confidence 33445566677799999999999999999999886553322 11 2233889999999999999999999999999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
.+. .+.....+.+........|.. . .....-..+.++.+.+|+.-.... ...++ ..|.+.+
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~---s------------~~~tag~s~d~~n~~lwDtl~~~~-~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG---S------------LLATAGRSSDNRNVCLWDTLLPPM-NSLVH--TCHDGGA 2339 (2439)
T ss_pred ccC-CcceeccccCCccccceeeee---h------------hhhccccCCCCCcccchhcccCcc-cceee--eecCCCc
Confidence 986 444444454444443333322 0 011111233444555665432211 11233 7899999
Q ss_pred eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
+++++.|.. +|++|+.+|.|+|||++..+..++++. ++ ...+|++|+..|.|+||++..-.++.
T Consensus 2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEccccchhh
Confidence 999999998 999999999999999998888777654 33 46799999999999999998876553
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=2.1e-07 Score=96.13 Aligned_cols=221 Identities=9% Similarity=0.036 Sum_probs=125.9
Q ss_pred ccccceeccCCCeEE---eeecCC--eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-----CC
Q 011126 237 RHGSATLKPGDHELT---LGQRMR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-----DG 306 (493)
Q Consensus 237 ~~~~~~fsp~g~~la---sgs~dg--~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-----Dg 306 (493)
...+-.|+|||+.++ +...+| .|.+.++...... .+....+.....+|+|||++|+..+. |.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--------~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--------KILALQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--------EeecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence 344578999997532 444444 4666676644321 22333445567899999998876553 22
Q ss_pred cEEEEecCCCe--eeeeeecc-CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 307 TVRVWKVIEHE--RLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 307 ~V~iWdl~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
.+.+|++..+. ....+... ........|++++...++..... ....+.+++... .......
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~-------------g~~~ly~~~~~~---~g~~~~~ 321 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD-------------GRPRIYIMQIDP---EGQSPRL 321 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC-------------CCceEEEEECcc---cccceEE
Confidence 34457766431 11222211 11222344544443222221111 111222221110 0111233
Q ss_pred EecCCCCEeEEEEeCCC-eEEEEeCC---CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC---CCeEEEE
Q 011126 384 FQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIW 456 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g-~l~sgs~D---g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~IW 456 (493)
+..+...+....|+|+| .|+..+.+ ..|.+||+.+++..........+....|+| ++++|+.... ...|++|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECC-CCCEEEEEECCCCCceEEEE
Confidence 44445567789999999 66655433 469999999887755444444677899999 9988775443 3579999
Q ss_pred eCCCCeEEEecCCCCCeEEEEEccCC
Q 011126 457 EVRRCQVVDYTDIREIVSAVCYCPDG 482 (493)
Q Consensus 457 dl~~~~~~~~~~~~~~I~sv~~spdG 482 (493)
|+.+++...+......+...+|+|-.
T Consensus 401 dl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 401 SLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEeecCCCcccCceecCCC
Confidence 99988877666566667788898854
No 244
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=5.1e-09 Score=103.03 Aligned_cols=198 Identities=21% Similarity=0.231 Sum_probs=134.7
Q ss_pred eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec-cCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (493)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (493)
..|..|.+.|+.|.|+..|..|++|+.|..|.+||...+..+..+.. |...+....|.+......+.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~------------ 203 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIV------------ 203 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCce------------
Confidence 35678999999999999999999999999999999988877665543 22222223333332221111
Q ss_pred eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec----CCC-
Q 011126 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNN- 429 (493)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~- 429 (493)
..+.++.+.+-....... ......+..|.++|..++.-|+. .|++++.|+.+.-.|+++..+-..+. +..
T Consensus 204 --~~s~dgqvr~s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 204 --TSSRDGQVRVSEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred --eccccCceeeeeeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 112222222111111000 01133456799999999999987 89999999999999999876654442 444
Q ss_pred --cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-------Ee------cCCCCCeEEEEEccCCCEEEEeec
Q 011126 430 --YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-------DY------TDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 430 --~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-------~~------~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
....|+.+|.+.++|++|+.|..++|||.+.-... .+ ....-.|+++.|+.+|.-|+++-.
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 67899999977779999999999999999853221 11 133446999999988776666544
No 245
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=9.6e-09 Score=99.13 Aligned_cols=79 Identities=23% Similarity=0.552 Sum_probs=70.4
Q ss_pred EecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
+-||-.-+++++|+||+ +++++..|..|||-.......+..| +|...|..++.-+ +..|++||.|++|++||+.+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence 46899999999999999 9999999999999888877777666 4999999999986 56799999999999999999
Q ss_pred CeEE
Q 011126 461 CQVV 464 (493)
Q Consensus 461 ~~~~ 464 (493)
++.+
T Consensus 225 gk~L 228 (390)
T KOG3914|consen 225 GKLL 228 (390)
T ss_pred CCcc
Confidence 8765
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.1e-07 Score=98.78 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=105.8
Q ss_pred eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CC--cEEEEecCCCeeeeeeeccCCCCceEEE
Q 011126 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG--TVRVWKVIEHERLDGFDVQDTDPSCLYF 334 (493)
Q Consensus 258 ~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg--~V~iWdl~~~~~~~~~~~~~~~~~~~~~ 334 (493)
.|.++|...... +.+..+...+....|+|||++|+..+. ++ .|.+||+.+++...
T Consensus 199 ~l~i~d~dG~~~--------~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-------------- 256 (448)
T PRK04792 199 QLMIADYDGYNE--------QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-------------- 256 (448)
T ss_pred EEEEEeCCCCCc--------eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------
Confidence 566667654321 234456778999999999998887654 33 47777876554211
Q ss_pred eeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCCCe--
Q 011126 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKT-- 410 (493)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~Dg~-- 410 (493)
+..+. +.....+|+|+| .| ++.+.++.
T Consensus 257 ----------------------------------------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 257 ----------------------------------------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred ----------------------------------------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 00011 122357899999 44 45566665
Q ss_pred EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-CC--eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126 411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 411 V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s 487 (493)
|.+||+.+++......+........|+| ++++|+..+. ++ .|+++|+.+++...+..........+|+|||++|+.
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence 7778888877655545666678899999 8988776554 33 577778888876654333333456799999999887
Q ss_pred eec
Q 011126 488 SAC 490 (493)
Q Consensus 488 ~s~ 490 (493)
.+.
T Consensus 367 ~~~ 369 (448)
T PRK04792 367 VNR 369 (448)
T ss_pred EEe
Confidence 654
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=1.4e-07 Score=97.83 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=107.5
Q ss_pred eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCCCeeeeeeeccCCCCceEEE
Q 011126 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLYF 334 (493)
Q Consensus 258 ~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~~~~~~~~~~~~~~~~~~~~ 334 (493)
.|.++|..... .+.+..|...+....|+|||++|+..+.+ ..|.+|++.+++...
T Consensus 180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-------------- 237 (430)
T PRK00178 180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-------------- 237 (430)
T ss_pred EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------
Confidence 46677765432 12345677789999999999999876644 358888886654211
Q ss_pred eeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE-EEeCCC--e
Q 011126 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK--T 410 (493)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~-sgs~Dg--~ 410 (493)
+....+.+...+|+|+| .|+ +...++ .
T Consensus 238 -------------------------------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 238 -------------------------------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred -------------------------------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 00111223457899999 554 555555 5
Q ss_pred EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-C--CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126 411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-D--GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 411 V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-D--g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s 487 (493)
|.+||+.++.......+........|+| +++.|+..+. + ..|+++|+.+++...+...........|+|||++|+.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8888999887655444556677789999 8887776654 3 3688889888876544322333456789999999987
Q ss_pred eec
Q 011126 488 SAC 490 (493)
Q Consensus 488 ~s~ 490 (493)
.+.
T Consensus 348 ~~~ 350 (430)
T PRK00178 348 VHR 350 (430)
T ss_pred EEc
Confidence 654
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.3e-07 Score=93.14 Aligned_cols=229 Identities=14% Similarity=0.194 Sum_probs=137.9
Q ss_pred cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC--EEEE-----EECCCcEEEEe
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLAS-----GGEDGTVRVWK 312 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Las-----gs~Dg~V~iWd 312 (493)
+..|+.|..+.|- -..+.|++|+........ -.-|...|..+.++|.+. .+|+ .|.-+.||||.
T Consensus 130 ~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~--------~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~ 200 (566)
T KOG2315|consen 130 VPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ--------HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYK 200 (566)
T ss_pred ccccccchhhhhh-hhcceEEEEecCCcccee--------eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEec
Confidence 3677777764433 345679999987633221 234778899999999633 4443 35566899999
Q ss_pred cCCCeeeeee---eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 313 VIEHERLDGF---DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 313 l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+.....-..+ .........+.|...+...++....+-++... ..-....++++.... .....-....+
T Consensus 201 ~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~----SYYGEq~Lyll~t~g-----~s~~V~L~k~G 271 (566)
T KOG2315|consen 201 YPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA----SYYGEQTLYLLATQG-----ESVSVPLLKEG 271 (566)
T ss_pred cccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc----cccccceEEEEEecC-----ceEEEecCCCC
Confidence 8633221111 11111122233333333333332222211100 011122233322220 11111122478
Q ss_pred CEeEEEEeCCC---eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCCeE
Q 011126 390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQV 463 (493)
Q Consensus 390 ~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~~~ 463 (493)
+|.++.|+|++ -++-|-+--++.|+|++.. ++..| ..++-+++-|+| .|++|+.++.+ |.|.|||+.+.+.
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df-~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF-PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKL 348 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC-CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhh
Confidence 99999999999 4456678899999998754 33333 456778999999 99999988875 8899999999887
Q ss_pred EEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 464 VDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 464 ~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+....... -+-+.|+|||++++++.+
T Consensus 349 i~~~~a~~-tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 349 IAKFKAAN-TTVFEWSPDGEYFLTATT 374 (566)
T ss_pred ccccccCC-ceEEEEcCCCcEEEEEec
Confidence 75444333 345789999999999875
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=1.6e-07 Score=96.45 Aligned_cols=251 Identities=14% Similarity=0.150 Sum_probs=160.2
Q ss_pred ccceeccCCCeEEeeecCCeEEEEECCCcccc--------ccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--------LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~--------~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
.+++|+....++|+|+.||.++|-.+.+.... .+.+.+.|++.||.+.|.-+.|+.+.+.|-|...+|.|.|
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 45899999999999999999999988764432 3456677899999999999999999999999999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeee----------eccCcccccee-----------------eeecCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI----------DVDKEKIDKTK-----------------SLRKSSD 363 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-----------------~~~~s~~ 363 (493)
|-+-.+.-...+-..........++.+..+.-+++ ..+++.+.... .+.+-..
T Consensus 98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~an 177 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKAN 177 (1189)
T ss_pred EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcC
Confidence 99877765444433333333333333322222222 22222211100 0111122
Q ss_pred ceEEEcCCC-ceeecc--cceEE----EecCCCCEeEEEEe--------CCC-eEEEEeCCCeEEEEECCCCcEEEEecC
Q 011126 364 LTCVVLPPK-VFRLLE--KPLHE----FQGHSSEVLDLSWS--------KNG-FLLSSSADKTVRLWQVGIDRCLRVFSH 427 (493)
Q Consensus 364 ~~~~~~~~~-~~~~~~--~~~~~----~~~h~~~V~~l~~s--------p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h 427 (493)
+.+.+++.. .|...- ..... +......|-.+.|. |+. .|+.+...|.+.|..-........+..
T Consensus 178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt 257 (1189)
T KOG2041|consen 178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT 257 (1189)
T ss_pred CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec
Confidence 333333322 111110 11111 11122235667774 244 899999999999887666655566666
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCC---------eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 428 NNYVTSVAFNPVDDNYFISGSIDG---------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 428 ~~~V~~v~fsp~d~~~l~sgs~Dg---------~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.-.|..+.|+| +|.+|+.++.|. +|.+|..-..-+-.+......|++++|-..|-.++.+..
T Consensus 258 gm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Avd 328 (1189)
T KOG2041|consen 258 GMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVD 328 (1189)
T ss_pred ccEeecceecC-CCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEec
Confidence 68899999999 999999998753 566665543333345666678999999999888776643
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.88 E-value=1.4e-06 Score=86.47 Aligned_cols=227 Identities=11% Similarity=0.057 Sum_probs=130.5
Q ss_pred eccCCCeEEeeec----------CCeEEEEECCCccccccccccce-eeecccCCEEEEEEccCCCEEEEEE-C-CCcEE
Q 011126 243 LKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQ-EFLAHEGSILTMKFSLDGQYLASGG-E-DGTVR 309 (493)
Q Consensus 243 fsp~g~~lasgs~----------dg~V~vwd~~~~~~~~~~~~~~~-~l~~H~~~I~~l~fspdg~~Lasgs-~-Dg~V~ 309 (493)
++|+++.|+++.. +..|.|||..+............ +++ ....-..++++|||++|+... . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCEEE
Confidence 8999998877654 78999999986553221100000 000 122344789999999998776 3 68999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+.|+.+++.+..+..+. ...++........+.+.+.. ........++....-....+.....++ ...
T Consensus 132 VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~~~~~Dg~------~~~v~~d~~g~~~~~~~~vf~~~~~~v-----~~r 198 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD--CYHIFPTANDTFFMHCRDGS------LAKVGYGTKGNPKIKPTEVFHPEDEYL-----INH 198 (352)
T ss_pred EEECCCCcEEEEEeCCC--CcEEEEecCCccEEEeecCc------eEEEEecCCCceEEeeeeeecCCcccc-----ccC
Confidence 99999999998888743 22222222222211111110 000011111111111111110000000 011
Q ss_pred CEeEEEEeC-CC-eEEEEeCCCeEEEEECCC-----CcEEEEec--------CCCcEEEEEEccCCCCEEEEEe------
Q 011126 390 EVLDLSWSK-NG-FLLSSSADKTVRLWQVGI-----DRCLRVFS--------HNNYVTSVAFNPVDDNYFISGS------ 448 (493)
Q Consensus 390 ~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~-----~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs------ 448 (493)
+ .|.+ +| ++..... |+|.+-|+.. ......+. ....+.-++++| +++.+....
T Consensus 199 P----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 199 P----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKW 272 (352)
T ss_pred C----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccc
Confidence 2 3455 66 5555555 9999999643 33333332 223444599999 777666632
Q ss_pred ----CCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC-EEEEee
Q 011126 449 ----IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-VRQNSA 489 (493)
Q Consensus 449 ----~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~-~l~s~s 489 (493)
..+.|.++|+.+++++........+..|+++|||+ .|++..
T Consensus 273 thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 273 THKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred cccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence 12589999999999998777778999999999999 666554
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.86 E-value=5.5e-07 Score=90.90 Aligned_cols=169 Identities=16% Similarity=0.201 Sum_probs=113.0
Q ss_pred EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCC
Q 011126 250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329 (493)
Q Consensus 250 lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~ 329 (493)
+++-..++.|.|.|..+.+. ...+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++..
T Consensus 9 ~V~~~~~~~v~viD~~t~~~-------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----- 76 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKV-------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----- 76 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SE-------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------
T ss_pred EEEecCCCEEEEEECCCCeE-------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----
Confidence 34566789999999875432 223443333334578999999999999999999999998886655432
Q ss_pred ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE-EEeC
Q 011126 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSA 407 (493)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~-sgs~ 407 (493)
.....+++++++| +++ +...
T Consensus 77 ----------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~ 98 (369)
T PF02239_consen 77 ----------------------------------------------------------GGNPRGIAVSPDGKYVYVANYE 98 (369)
T ss_dssp ----------------------------------------------------------SSEEEEEEE--TTTEEEEEEEE
T ss_pred ----------------------------------------------------------CCCcceEEEcCCCCEEEEEecC
Confidence 2235689999999 555 5567
Q ss_pred CCeEEEEECCCCcEEEEecC--------CCcEEEEEEccCCCCEEE-EEeCCCeEEEEeCCCCeEE--EecCCCCCeEEE
Q 011126 408 DKTVRLWQVGIDRCLRVFSH--------NNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRRCQVV--DYTDIREIVSAV 476 (493)
Q Consensus 408 Dg~V~lWd~~~~~~~~~~~h--------~~~V~~v~fsp~d~~~l~-sgs~Dg~V~IWdl~~~~~~--~~~~~~~~I~sv 476 (493)
.+.|.++|.++.+.++.+.. ...+..|..+| ....++ +.-.-+.|.+-|..+.+.+ ............
T Consensus 99 ~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 99 PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred CCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 89999999999999988752 34678888888 566444 4444588988898765433 455566778899
Q ss_pred EEccCCCEEEEee
Q 011126 477 CYCPDGKVRQNSA 489 (493)
Q Consensus 477 ~~spdG~~l~s~s 489 (493)
.|+|+|++++++.
T Consensus 178 ~~dpdgry~~va~ 190 (369)
T PF02239_consen 178 GFDPDGRYFLVAA 190 (369)
T ss_dssp EE-TTSSEEEEEE
T ss_pred ccCcccceeeecc
Confidence 9999999988764
No 252
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.9e-07 Score=93.50 Aligned_cols=100 Identities=14% Similarity=0.325 Sum_probs=71.4
Q ss_pred CCCEeEEEEeCCC-eEEEEe---CCCeEEEEECCC-C---cEEEEecCCCcEEEEEEccCCCCEEEEEe---CCCeEEEE
Q 011126 388 SSEVLDLSWSKNG-FLLSSS---ADKTVRLWQVGI-D---RCLRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIW 456 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs---~Dg~V~lWd~~~-~---~~~~~~~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~IW 456 (493)
...|...+|-|.| .+++-+ ...++.+|.+.+ . ..+..+ .....+.+.|+| .|++++.+. ..|.+.++
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DKKFANTVFWSP-KGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-cccccceEEEcC-CCcEEEEEEecccccceEEE
Confidence 4567889999998 444332 246799998874 2 223333 235678999999 999988764 46889999
Q ss_pred eCCC--CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 457 EVRR--CQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 457 dl~~--~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
|+.- .+.+....|. ..+.+.|.|.|+|++++++
T Consensus 523 D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 523 DTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred ecchhhhhhccCcccc-ccccceECCCCCEEEEeee
Confidence 9984 3444444454 5688999999999999875
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.85 E-value=1.7e-06 Score=87.04 Aligned_cols=237 Identities=13% Similarity=0.205 Sum_probs=139.0
Q ss_pred cccccceeccCCCeEEeeec----CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEE
Q 011126 236 DRHGSATLKPGDHELTLGQR----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRV 310 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~----dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~i 310 (493)
....+++++|++++|.+... .+.|..|.+......+..+ .........-..++++|++++|+++.+ +|.|.+
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~---~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL---NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE---EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe---eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 34456899999999988766 5799999887653223221 122223344567999999999988875 899999
Q ss_pred EecCCC-eeeeeee---c----------cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126 311 WKVIEH-ERLDGFD---V----------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (493)
Q Consensus 311 Wdl~~~-~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (493)
+++... ....... . ....+.++.+.+++ ..++..+...+.+..+. ++.....+
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~------------~~~~~~~l 180 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYD------------IDDDTGKL 180 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEE------------E-TTS-TE
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEE------------EeCCCceE
Confidence 999873 3322211 0 01112233333322 22333333322221111 11111011
Q ss_pred cccceEEEe-cCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECC--CCcE--EEEec-------CCCcEEEEEEccCCCC
Q 011126 377 LEKPLHEFQ-GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG--IDRC--LRVFS-------HNNYVTSVAFNPVDDN 442 (493)
Q Consensus 377 ~~~~~~~~~-~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~--~~~~--~~~~~-------h~~~V~~v~fsp~d~~ 442 (493)
.. ...+. ........++|+|++ .+++.-.+++|.++++. .+.. +..+. .......|+++| +++
T Consensus 181 ~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~ 257 (345)
T PF10282_consen 181 TP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGR 257 (345)
T ss_dssp EE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSS
T ss_pred EE--eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCC
Confidence 11 12222 344567899999998 55666788999999988 3322 22222 123688999999 999
Q ss_pred EEEEEe-CCCeEEEEeCC--CCeEE--Ee-cCCCCCeEEEEEccCCCEEEEeecC
Q 011126 443 YFISGS-IDGKVRIWEVR--RCQVV--DY-TDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 443 ~l~sgs-~Dg~V~IWdl~--~~~~~--~~-~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+|.++. ..+.|.+|++. ++++. .. .........+.++|+|++|+++..+
T Consensus 258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 877765 46789999994 34433 32 2234458999999999999998753
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.83 E-value=1.2e-07 Score=89.79 Aligned_cols=229 Identities=19% Similarity=0.303 Sum_probs=146.8
Q ss_pred CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
..+.++.+.++....-|...-+++.+.|.+++||--.....--.. ....-..+++++.+.+....|+.|-..|++
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps-----I~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS-----IYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-----hhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 357788899998888888888999999999999965433221111 112245789999999999999999999999
Q ss_pred EEEecCC----CeeeeeeeccCCCCceEEEeeCCC--------Cceee-eeccCccccceeeeecCCC----ceEEEcCC
Q 011126 309 RVWKVIE----HERLDGFDVQDTDPSCLYFTINHL--------SQLIP-IDVDKEKIDKTKSLRKSSD----LTCVVLPP 371 (493)
Q Consensus 309 ~iWdl~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~s~~----~~~~~~~~ 371 (493)
.-+.+.. ...++.+..+...+..+.+..... ..+.- ......+...+........ ..+.....
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 9887632 222333333333333332222111 00000 0000111111111111000 00111111
Q ss_pred C--------ceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEecCCCcEEEEEEccCC
Q 011126 372 K--------VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVD 440 (493)
Q Consensus 372 ~--------~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~~h~~~V~~v~fsp~d 440 (493)
. .....-.++.++.+|.+.+.+++|.|.. +|.+|..|..|.+||+...+ ....+.|.+.|..++.-+ .
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~ 251 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-H 251 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-h
Confidence 1 1111225678899999999999999987 99999999999999996543 444556999999999888 7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeE
Q 011126 441 DNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 441 ~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
-..+++++.||.|.+|+++....
T Consensus 252 t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred heeeeeccCCCeEEEEeccceee
Confidence 88899999999999999986543
No 255
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.83 E-value=1.2e-07 Score=102.74 Aligned_cols=195 Identities=16% Similarity=0.265 Sum_probs=122.2
Q ss_pred eeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCee-------eeeeeccCCCCceEEEeeCCCCceeeeeccCc
Q 011126 279 EFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE 350 (493)
Q Consensus 279 ~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (493)
.+..|...|..++.++. +.+++||+.||+|++|+..+-.. ..++........++.+..++.
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~----------- 1111 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD----------- 1111 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-----------
Confidence 35668889999998875 48999999999999999854221 112221222222333322221
Q ss_pred cccceeeeecCCCceEEEcCCCceeecc---cceEEEecC-CCCEe-EEEEeCC--C-eEEEEeCCCeEEEEECCCCcEE
Q 011126 351 KIDKTKSLRKSSDLTCVVLPPKVFRLLE---KPLHEFQGH-SSEVL-DLSWSKN--G-FLLSSSADKTVRLWQVGIDRCL 422 (493)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~h-~~~V~-~l~~sp~--g-~l~sgs~Dg~V~lWd~~~~~~~ 422 (493)
....++.|+.+.+.......... ........+ .+.+. ..+|... . .|+.+..-+.|..||+++...+
T Consensus 1112 -----~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1112 -----QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred -----eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence 11223555555555444321110 111111111 12232 2333322 2 6777888899999999988776
Q ss_pred EEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCCeEEEEEccCC---CEEEEeec
Q 011126 423 RVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDG---KVRQNSAC 490 (493)
Q Consensus 423 ~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~spdG---~~l~s~s~ 490 (493)
..++ ..+.|++++.+| .++++++|+..|.+-+||++=+.++. ...+..+|+.++.+|-- ...++++.
T Consensus 1187 w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred HhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 6665 447899999999 89999999999999999999877773 34455788888887754 35555543
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.82 E-value=5.3e-08 Score=90.47 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=118.5
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERL 319 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~ 319 (493)
+.|++.+..++++-.+|.+.+-+... ..+...|.+++|+-.++..+|+. +.+++.+||.|+.+..||++..+.
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~-----~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~- 200 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETE-----MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT- 200 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecce-----eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-
Confidence 67899999999999999998544332 23445678899999999999987 456889999999999999862210
Q ss_pred eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
+ + .+..+-|...|.+|.-+|.
T Consensus 201 --~---------------------------------------------i------------~~n~kvH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 201 --F---------------------------------------------I------------WHNSKVHTSGVVSIYSSPP 221 (339)
T ss_pred --e---------------------------------------------e------------eecceeeecceEEEecCCC
Confidence 0 0 1112448889999988886
Q ss_pred C--eEEEEeCCCeEEEEECC-CCcEEEEecCCCcEEEEEEccCCC-CEEEEEeCCCeEEEEeCCCC
Q 011126 400 G--FLLSSSADKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDD-NYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 400 g--~l~sgs~Dg~V~lWd~~-~~~~~~~~~h~~~V~~v~fsp~d~-~~l~sgs~Dg~V~IWdl~~~ 461 (493)
. +++||+.|..|++||.+ .++++..-...+.|+.+.++|... .+|+++-..| .+|-+...+
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 5 99999999999999998 677877777889999999999543 3455555555 677777654
No 257
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.82 E-value=8.8e-09 Score=100.80 Aligned_cols=181 Identities=15% Similarity=0.209 Sum_probs=139.7
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCce
Q 011126 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (493)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 365 (493)
.-+.+.++.+|++|+.|+.-|.|-.+|..+++....+...+. +..+.|..+.. ++.......
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et-v~Dv~~LHneq-----------------~~AVAQK~y 192 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET-VRDVTFLHNEQ-----------------FFAVAQKKY 192 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhh-hhhhhhhcchH-----------------HHHhhhhce
Confidence 346789999999999999999999999999998877765432 11222222111 111122223
Q ss_pred EEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCE
Q 011126 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY 443 (493)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~ 443 (493)
+++++... ..++.++.| ..|..|.|-|.. +|++++..|.++.-|+.+|+.+..+. -.+.+..++-+| -+..
T Consensus 193 ~yvYD~~G-----tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaV 265 (545)
T KOG1272|consen 193 VYVYDNNG-----TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAV 265 (545)
T ss_pred EEEecCCC-----cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccce
Confidence 44444332 234545544 568899999998 88999999999999999999999887 567888899999 7888
Q ss_pred EEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 444 l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+-+|...|+|.+|.....+.+ .+.-|.++|.+|++.++|+|++++|.|
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D 314 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD 314 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc
Confidence 999999999999999988766 688999999999999999999999876
No 258
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=8.4e-07 Score=85.55 Aligned_cols=236 Identities=15% Similarity=0.174 Sum_probs=143.4
Q ss_pred cccccceeccCCC--eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 236 DRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 236 ~~~~~~~fsp~g~--~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
+++..++|.-+++ .+...+.+..+..+........ +.+...........+|..++.. || .|++|-.+|.+.+|.+
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~-s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS-SSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccc-cccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence 4444555554443 3333435555555554432211 1111112234456677777764 34 6788899999999998
Q ss_pred CCCee----eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCC--ceEEEcCCCce----eecccceEE
Q 011126 314 IEHER----LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD--LTCVVLPPKVF----RLLEKPLHE 383 (493)
Q Consensus 314 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~----~~~~~~~~~ 383 (493)
..+.. +..+... + .+..+ ............++.. ..+.+|+.... ....-|--.
T Consensus 133 k~~d~hss~l~~la~g--~------------g~~~~--r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG--P------------GLYDV--RQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred cCCccccccceeeecC--C------------ceeee--ccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 74431 1111111 0 00000 0001111111222222 33344443221 110000000
Q ss_pred Eec-CCCCEeEEEEeCC--C-eEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126 384 FQG-HSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (493)
Q Consensus 384 ~~~-h~~~V~~l~~sp~--g-~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd 457 (493)
+.- -.-.++++.|-+. . .|++++.-+.||+||.+.+ +++..|. -..+++++...| .++++++|..-|.+..+|
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD 275 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFD 275 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheec
Confidence 000 1224678888877 4 9999999999999999865 5677776 678999999999 999999999999999999
Q ss_pred CCCCeEE--EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 458 VRRCQVV--DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 458 l~~~~~~--~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
++++++. .+.+..+.|++|..+|.+++++++|=|
T Consensus 276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred ccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence 9999987 378999999999999999999998865
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=2.5e-06 Score=88.17 Aligned_cols=212 Identities=13% Similarity=0.061 Sum_probs=117.8
Q ss_pred CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE---EEEECCC--cEEEEecCCCeeeeeeeccCCCCce
Q 011126 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL---ASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSC 331 (493)
Q Consensus 257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L---asgs~Dg--~V~iWdl~~~~~~~~~~~~~~~~~~ 331 (493)
..|.+.|...... +.+..+...+..-+|+|||+.+ ++...+| .|.+.++.+++....... ......
T Consensus 165 ~~l~~~d~dG~~~--------~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g~~~~ 235 (428)
T PRK01029 165 GELWSVDYDGQNL--------RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QGNQLM 235 (428)
T ss_pred ceEEEEcCCCCCc--------eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CCCccc
Confidence 3566666654321 1233345566778999999753 2444444 477778877754333222 222233
Q ss_pred EEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEe-CCC
Q 011126 332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADK 409 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs-~Dg 409 (493)
..|++++...++...... ..+..+..++..... ..++.....++.......+|+|+| .|+..+ .++
T Consensus 236 p~wSPDG~~Laf~s~~~g-----------~~di~~~~~~~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 236 PTFSPRKKLLAFISDRYG-----------NPDLFIQSFSLETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred eEECCCCCEEEEEECCCC-----------CcceeEEEeecccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence 455555543332221111 111111112211100 011122222223344678999999 555544 567
Q ss_pred eEEEEE--CCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCCeEEEecCCCCCeEEEEEccCC
Q 011126 410 TVRLWQ--VGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDG 482 (493)
Q Consensus 410 ~V~lWd--~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG 482 (493)
...||. +.. +.....+. +...+....|+| ++++|+..+.+ ..|++||+.+++...+......+....|+|||
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDS 382 (428)
T ss_pred CceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCC
Confidence 656664 432 22233333 445778899999 99988876543 47999999999887665555567889999999
Q ss_pred CEEEEeec
Q 011126 483 KVRQNSAC 490 (493)
Q Consensus 483 ~~l~s~s~ 490 (493)
+.|+..+.
T Consensus 383 ~~L~f~~~ 390 (428)
T PRK01029 383 LHLVYSAG 390 (428)
T ss_pred CEEEEEEC
Confidence 98876543
No 260
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=2.7e-06 Score=79.37 Aligned_cols=211 Identities=14% Similarity=0.181 Sum_probs=115.4
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
++.+.+|++||.- .|..|.|...+..-.... ...+.-+.-.-.=+-++||||+.+||.+...|+|+++|+.... +.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence 4667889888776 677888887664432221 1111112222345789999999999999999999999986543 33
Q ss_pred eeeccCCC-------CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC-ceeecccceEEEec-CCCCE
Q 011126 321 GFDVQDTD-------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VFRLLEKPLHEFQG-HSSEV 391 (493)
Q Consensus 321 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~-h~~~V 391 (493)
.+...... +..+.|...... ..-......+.............. .....+.....+.. +...|
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s--------~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKS--------AQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccc--------cccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 33322111 111111111100 000011111111111111111110 00111111223333 46789
Q ss_pred eEEEEeCCC-e-EEEEeCCC----------eEEEEECCCCcE---------------------E-----EEe----cCCC
Q 011126 392 LDLSWSKNG-F-LLSSSADK----------TVRLWQVGIDRC---------------------L-----RVF----SHNN 429 (493)
Q Consensus 392 ~~l~~sp~g-~-l~sgs~Dg----------~V~lWd~~~~~~---------------------~-----~~~----~h~~ 429 (493)
.++.|+|.. + ++.|+... -+.-|.+-.+.+ . +.+ ...+
T Consensus 151 ~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d 230 (282)
T PF15492_consen 151 NSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD 230 (282)
T ss_pred eEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCC
Confidence 999999986 4 44444332 256675432211 0 111 1367
Q ss_pred cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 430 ~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
.|..|..+| |+.+||+...+|+|.+|++..-++.
T Consensus 231 ~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 231 GIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhh
Confidence 899999999 9999999999999999999987665
No 261
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.6e-06 Score=87.20 Aligned_cols=218 Identities=17% Similarity=0.269 Sum_probs=130.8
Q ss_pred ecccccceeccCC--CeEEe-----eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EE--EEEEC
Q 011126 235 IDRHGSATLKPGD--HELTL-----GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YL--ASGGE 304 (493)
Q Consensus 235 ~~~~~~~~fsp~g--~~las-----gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~L--asgs~ 304 (493)
..+++...++|.+ ..+|+ ++.-..|+||.+.... .......++|. ...=..+.|++-|+ +| ++..-
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~--~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG--QHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc--ccchhhhcccc--ccceeEEEeccCCceEEEEEEEee
Confidence 3445557777773 34544 5677889999887211 11111112222 12234688998776 33 33333
Q ss_pred CC---------cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126 305 DG---------TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (493)
Q Consensus 305 Dg---------~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (493)
|. ++++.++........+ ....++.++.|.+.+....++.+.-..+ +.+ ++
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAk--------------vti-----fn 300 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAK--------------VTI-----FN 300 (566)
T ss_pred cCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccce--------------EEE-----Ec
Confidence 43 5777777633322222 2245667777776664443333322222 222 22
Q ss_pred ecccceEEEecCCCCEeEEEEeCCC-eEEEEeC---CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC--
Q 011126 376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-- 449 (493)
Q Consensus 376 ~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~---Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-- 449 (493)
+..+++..+ ..++=+++-|+|.| +|+.++. -|.|-|||+.+.+++..+...+. +-+.|+| ||++|+|++.
T Consensus 301 lr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-t~~eW~P-dGe~flTATTaP 376 (566)
T KOG2315|consen 301 LRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-TVFEWSP-DGEYFLTATTAP 376 (566)
T ss_pred CCCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc-eEEEEcC-CCcEEEEEeccc
Confidence 223444443 35667789999999 6666654 48899999999999888875544 3479999 9999999876
Q ss_pred ----CCeEEEEeCCCCeEEEecCCCCCeEEEEEccC
Q 011126 450 ----DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481 (493)
Q Consensus 450 ----Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spd 481 (493)
|+.++||++. |.++...........++|.|-
T Consensus 377 RlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred cEEecCCeEEEEec-CceeehhhhhHhHhheeeeec
Confidence 6889999985 444433333335677777764
No 262
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.68 E-value=1.1e-05 Score=77.37 Aligned_cols=241 Identities=19% Similarity=0.249 Sum_probs=151.7
Q ss_pred ccccceecc-CCCeEEeeecCCe-EEEEECCCccccc-cccccceeeecccCCEEEEEEccCCCEEEEEEC-----CCcE
Q 011126 237 RHGSATLKP-GDHELTLGQRMRR-VRVHPVKKQSREL-SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-----DGTV 308 (493)
Q Consensus 237 ~~~~~~fsp-~g~~lasgs~dg~-V~vwd~~~~~~~~-~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-----Dg~V 308 (493)
+...++.+| ....++.+-+.|+ ..+||........ ........|.+| -.|++||++|++.-. .|.|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEE
Confidence 334578889 5567777888876 5778887655331 122344567788 489999999998633 5789
Q ss_pred EEEecC-CCeeeeeeeccCCCCceEEEeeCCCCceeeeec-cCcc-ccceeeeecCCCceEEEcCCCceeecccceEEE-
Q 011126 309 RVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV-DKEK-IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF- 384 (493)
Q Consensus 309 ~iWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~- 384 (493)
-|||.. +-+.+.++..+...+..+.+.+++...++...- .... ..+.+.--......+.+.+.....+.++ ..+
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q--~~Lp 157 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ--VELP 157 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee--eecC
Confidence 999998 677888888888888888887777444433211 1110 0111222223333444444443333222 223
Q ss_pred -ecCCCCEeEEEEeCCCeEEEEeCC-C-------eEEEEECCCCcEEEEec--------CCCcEEEEEEccCCCCEEEEE
Q 011126 385 -QGHSSEVLDLSWSKNGFLLSSSAD-K-------TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 385 -~~h~~~V~~l~~sp~g~l~sgs~D-g-------~V~lWd~~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sg 447 (493)
.-|...|..|++.++|.++.+... + -|-+++... .+..+. ..+||-+|++++ ++.++++.
T Consensus 158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~t 234 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVT 234 (305)
T ss_pred ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeC-CCCEEEEE
Confidence 447788999999999955554321 1 244444332 233332 568999999999 88777554
Q ss_pred -eCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 448 -SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 448 -s~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
=.-+.+.+||..+++++......+ +..++-.+++ ++++++.
T Consensus 235 sPrGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 235 SPRGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CCCCCEEEEEECCCCCEeeccccCc-eeeeeecCCc-eEEeCCC
Confidence 467899999999999987655443 4566666666 6665554
No 263
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.67 E-value=2e-07 Score=87.13 Aligned_cols=231 Identities=19% Similarity=0.275 Sum_probs=139.3
Q ss_pred ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc------------CCEEEEEEccCCC--EEE
Q 011126 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA 300 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~La 300 (493)
.+.+.++.|...|.||++|...|+|.++...+...- ......++++|. ..|..|.|..++. .++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c--eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGC--EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccccc--chhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 366778999999999999999999999987654411 111122456664 3588999977543 455
Q ss_pred EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC-CceEEEcCCCceeeccc
Q 011126 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS-DLTCVVLPPKVFRLLEK 379 (493)
Q Consensus 301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~ 379 (493)
..+.|.+|++|.+............ . .-.+.....+.+... .......-+. +..+. .+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nn---l-s~~~~~~~~g~~~s~-------~~l~lprls~hd~iia----------a~ 162 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENN---L-SDSFHSPMGGPLTST-------KELLLPRLSEHDEIIA----------AK 162 (460)
T ss_pred EecCCceeeeeeeecccchhhhccc---c-ccccccccCCCcCCH-------HHhhcccccccceEEE----------ec
Confidence 5678999999998655321111000 0 000000000000000 0000000000 11111 12
Q ss_pred ceEEE-ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCc-EEEEe--c-C-----CCcEEEEEEccCCCCEEEEEeC
Q 011126 380 PLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVF--S-H-----NNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 380 ~~~~~-~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~-~~~~~--~-h-----~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
|.+.. ..|.-.|.+|.++.+...+..+.|=.|.+|++.-.. +.... + | ..-|++..|+|...+.|.-.+.
T Consensus 163 p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 163 PCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred cceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 22222 468888999999998844445668889999986422 22221 1 2 3468999999988889999999
Q ss_pred CCeEEEEeCCCCeEE-------E----------ecCCCCCeEEEEEccCCCEEEEe
Q 011126 450 DGKVRIWEVRRCQVV-------D----------YTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 450 Dg~V~IWdl~~~~~~-------~----------~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
.|.|++-|++...+. . +......|..+.|+|+|+++++-
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 999999999843221 0 12234468899999999999864
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=4.9e-06 Score=85.56 Aligned_cols=177 Identities=9% Similarity=0.063 Sum_probs=107.9
Q ss_pred ccceeccCCCe-EEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCC--cEEEE
Q 011126 239 GSATLKPGDHE-LTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TVRVW 311 (493)
Q Consensus 239 ~~~~fsp~g~~-lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg--~V~iW 311 (493)
....|+|+|+. ++..+. ...|.++|+.+.... .+....+.+....|+|||+.|+. .+.++ .|.++
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~--------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE--------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE--------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence 35789999985 554333 356888887654422 12234455667889999987754 33333 45555
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
++.+++.. .+..+....
T Consensus 263 dl~~g~~~---------------------------------------------------------------~LT~~~~~d 279 (419)
T PRK04043 263 DTNTKTLT---------------------------------------------------------------QITNYPGID 279 (419)
T ss_pred ECCCCcEE---------------------------------------------------------------EcccCCCcc
Confidence 55443211 111111112
Q ss_pred eEEEEeCCC-eE-EEEeCCC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---------CeEEEEeC
Q 011126 392 LDLSWSKNG-FL-LSSSADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---------GKVRIWEV 458 (493)
Q Consensus 392 ~~l~~sp~g-~l-~sgs~Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---------g~V~IWdl 458 (493)
....|+|+| .| ++....+ .|.++|+.++...+....... ...|+| ++++|+..+.. ..|.+.|+
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~ 356 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLIST 356 (419)
T ss_pred CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence 234799999 44 3443333 577778887776444332222 248999 99988776654 36889999
Q ss_pred CCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 459 RRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 459 ~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.++....+.... ......|+|||+.++....
T Consensus 357 ~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 357 NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CCCCeEECCCCC-CcCCeEECCCCCEEEEEEc
Confidence 988776655432 3346889999998876653
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.60 E-value=9.2e-06 Score=80.28 Aligned_cols=170 Identities=11% Similarity=0.167 Sum_probs=130.3
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC-cEEEEecCCCeeeeeeec
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-~V~iWdl~~~~~~~~~~~ 324 (493)
+|.+++.-++ |.+.|.+...... .-.+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~---------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------ 394 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYS---------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------ 394 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCee---------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------
Confidence 5667766655 4555554332210 1136888899999988888899999999 899999877652
Q ss_pred cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE
Q 011126 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~ 403 (493)
..+...-+.|..+..+|+| +++
T Consensus 395 ---------------------------------------------------------kr~e~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 395 ---------------------------------------------------------KRIEKDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred ---------------------------------------------------------EEeeCCccceEEEEEcCCCcEEE
Confidence 2334456789999999999 788
Q ss_pred EEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCC----eEEEEeCCCCeEEEecCCCCCeEEEEE
Q 011126 404 SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDIREIVSAVCY 478 (493)
Q Consensus 404 sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg----~V~IWdl~~~~~~~~~~~~~~I~sv~~ 478 (493)
.+.....|.+.|+.++.....-+ ..+-|+.+.|+| ++++||-+--+| .|+++|+.++++...+.....=.+-+|
T Consensus 418 vaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF 496 (668)
T COG4946 418 VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF 496 (668)
T ss_pred EEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc
Confidence 88888889999999987755443 567899999999 999999876665 699999999999987666666677899
Q ss_pred ccCCCEEEEee
Q 011126 479 CPDGKVRQNSA 489 (493)
Q Consensus 479 spdG~~l~s~s 489 (493)
.|||++|.--+
T Consensus 497 D~d~ryLYfLs 507 (668)
T COG4946 497 DPDGRYLYFLS 507 (668)
T ss_pred CCCCcEEEEEe
Confidence 99999987544
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.58 E-value=1.2e-05 Score=80.13 Aligned_cols=227 Identities=16% Similarity=0.240 Sum_probs=140.9
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC--CEEEE-----EECCCcEEEEec
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG--QYLAS-----GGEDGTVRVWKV 313 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~Las-----gs~Dg~V~iWdl 313 (493)
+.|+-++.++|-- -...++|+++..+. ...... .+. ...|....|+|.+ ..||. .+.++.++||.+
T Consensus 137 ~k~s~~D~y~ARv-v~~sl~i~e~t~n~-~~~p~~---~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI 209 (561)
T COG5354 137 LKFSIDDKYVARV-VGSSLYIHEITDNI-EEHPFK---NLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI 209 (561)
T ss_pred eeeeecchhhhhh-ccCeEEEEecCCcc-ccCchh---hcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence 6788888877665 44568999973322 211111 111 3568888999953 34544 467889999999
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (493)
..+..+.+-.........+.|...+...++.+.... +..+.. . ....+.++. +.+.-+.....-.++|.+
T Consensus 210 p~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~-ksnKsy--f--gesnLyl~~-----~~e~~i~V~~~~~~pVhd 279 (561)
T COG5354 210 PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT-KSNKSY--F--GESNLYLLR-----ITERSIPVEKDLKDPVHD 279 (561)
T ss_pred cCCCeeeeeeeEeecccEEEEecCCceEEEEEEEee-ecccce--e--ccceEEEEe-----ecccccceecccccccee
Confidence 877766655554444445555555443333222211 110000 0 011222222 222223333355789999
Q ss_pred EEEeCCC---eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCCeEEE--
Q 011126 394 LSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD-- 465 (493)
Q Consensus 394 l~~sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~~~~~-- 465 (493)
.+|.|.+ -+++|-++-.+.++|++.. +........-+.+.|+| .+++++.++.| |.|-|||..+.-.+.
T Consensus 280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~ 356 (561)
T COG5354 280 FTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGA 356 (561)
T ss_pred eeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEEE
Confidence 9999987 4556678999999999977 44444556667899999 99999998877 679999998775553
Q ss_pred ecCCCCCeEEEEEccCCCEEEEee
Q 011126 466 YTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 466 ~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
+.+.. .+-+.|+|||+++.+..
T Consensus 357 ~~~~n--~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 357 FNGLN--TSYCDWSPDGQFYDTDT 378 (561)
T ss_pred eecCC--ceEeeccCCceEEEecC
Confidence 33332 34467999999887653
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.58 E-value=1.6e-07 Score=61.88 Aligned_cols=36 Identities=47% Similarity=0.860 Sum_probs=34.0
Q ss_pred ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
.+++.+|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 457899999999999999999999999999999997
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=5.6e-05 Score=72.81 Aligned_cols=214 Identities=15% Similarity=0.220 Sum_probs=131.8
Q ss_pred CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCC--Ceeee--eeeccCCC
Q 011126 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIE--HERLD--GFDVQDTD 328 (493)
Q Consensus 256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~--~~~~~--~~~~~~~~ 328 (493)
.+-|.+|++.+....+..+. +..+.+.++-|+|+|++++|.++-.+ |.|-.|.+.. |.... .......+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~----~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~ 90 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ----LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP 90 (346)
T ss_pred CCceEEEEEeCcccccchhh----hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence 56799999987666655432 34677889999999999999888654 7788888765 43322 12222222
Q ss_pred CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC----------EeEEEEeC
Q 011126 329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----------VLDLSWSK 398 (493)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------V~~l~~sp 398 (493)
+ ...+.+.....+...... .+.+.+++.+.......++ ....|.+. +....+.|
T Consensus 91 p--~yvsvd~~g~~vf~AnY~-------------~g~v~v~p~~~dG~l~~~v-~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 91 P--CYVSVDEDGRFVFVANYH-------------SGSVSVYPLQADGSLQPVV-QVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred C--eEEEECCCCCEEEEEEcc-------------CceEEEEEcccCCccccce-eeeecCCCCCCccccCCccceeeeCC
Confidence 2 444444444333222211 1233333332211111111 12223333 77888999
Q ss_pred CC-eEEEEe-CCCeEEEEECCCCcEEEE----ecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCC--CeEEEec--
Q 011126 399 NG-FLLSSS-ADKTVRLWQVGIDRCLRV----FSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR--CQVVDYT-- 467 (493)
Q Consensus 399 ~g-~l~sgs-~Dg~V~lWd~~~~~~~~~----~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~--~~~~~~~-- 467 (493)
++ +|++.. .-..|.+|++..+..... ++.......|.|+| ++++..... .+++|-+|.... +++-.+.
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 99 666654 335699999986654322 24667788999999 999877665 589999999987 3332211
Q ss_pred -------CCCCCeEEEEEccCCCEEEEeec
Q 011126 468 -------DIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 468 -------~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.......+|..+|||++|.++..
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred ccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 12345788999999999998753
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.53 E-value=4.3e-06 Score=79.52 Aligned_cols=226 Identities=20% Similarity=0.319 Sum_probs=133.0
Q ss_pred CeEEeeecCCeEEEEECCCcccccc--------------cc--------------cccee-eecccCCEEEEEEccCCCE
Q 011126 248 HELTLGQRMRRVRVHPVKKQSRELS--------------SL--------------YTGQE-FLAHEGSILTMKFSLDGQY 298 (493)
Q Consensus 248 ~~lasgs~dg~V~vwd~~~~~~~~~--------------~~--------------~~~~~-l~~H~~~I~~l~fspdg~~ 298 (493)
..++..+.|.+|++|.+........ .+ .+.+. -.+|+--|++|.++.|+..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 3566777999999998865432220 00 00011 1468888999999999998
Q ss_pred EEEEECCCcEEEEecCCCeeeeee-eccCC-------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcC
Q 011126 299 LASGGEDGTVRVWKVIEHERLDGF-DVQDT-------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (493)
Q Consensus 299 Lasgs~Dg~V~iWdl~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 370 (493)
++++ .|=.|.+|++.--.....+ ..... .++...|.+.+ .......++.+.+.+.+
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~---------------cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH---------------CNVFVYSSSKGTIRLCD 242 (433)
T ss_pred Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH---------------ccEEEEecCCCcEEEee
Confidence 8886 4667999998543322111 11110 11111222211 12223344555566655
Q ss_pred CCceee----------cccce--EEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECC-CCcEEEEec-C--------
Q 011126 371 PKVFRL----------LEKPL--HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDRCLRVFS-H-------- 427 (493)
Q Consensus 371 ~~~~~~----------~~~~~--~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~-~~~~~~~~~-h-------- 427 (493)
.+.-.+ .+.|. .-|.+--..|.++.|+++| ++++-. --+|+|||+. ..+++.++. |
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 543222 11111 1122334578899999999 666643 3789999994 455555553 2
Q ss_pred ----CCc---EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec---------------------------------
Q 011126 428 ----NNY---VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--------------------------------- 467 (493)
Q Consensus 428 ----~~~---V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~--------------------------------- 467 (493)
.+. -.-++|+- ++.+++||+....++++++..+......
T Consensus 322 ~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd 400 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVD 400 (433)
T ss_pred HHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccc
Confidence 122 24578888 8899999999999999996654321100
Q ss_pred --CCCCCeEEEEEccCCCEEEEeecC
Q 011126 468 --DIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 468 --~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+....|...+|+|....+++++.+
T Consensus 401 ~ldf~kkilh~aWhp~en~ia~aatn 426 (433)
T KOG1354|consen 401 ALDFRKKILHTAWHPKENSIAVAATN 426 (433)
T ss_pred hhhhhhHHHhhccCCccceeeeeecC
Confidence 011125567899999988888764
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.53 E-value=3.9e-07 Score=88.19 Aligned_cols=126 Identities=21% Similarity=0.327 Sum_probs=90.7
Q ss_pred eeeecccccceeccCCCeEEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
.+...+..++.|-.+......+-. ...+.+|..... +...+.||-.-++.++|+||+++|+++..|..|
T Consensus 104 ~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~--------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkI 175 (390)
T KOG3914|consen 104 SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG--------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKI 175 (390)
T ss_pred eecccCcceeeeeeccceEEEEeecCCceeeeeeccccc--------CcchhhhhhhhhheeeecCCCCEEEEecCCceE
Confidence 333444445566555555555444 445555554431 223467899999999999999999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
||-.....-.+. .-..||.
T Consensus 176 Rvs~ypa~f~Ie-------------------------------------------------------------sfclGH~ 194 (390)
T KOG3914|consen 176 RVSRYPATFVIE-------------------------------------------------------------SFCLGHK 194 (390)
T ss_pred EEEecCcccchh-------------------------------------------------------------hhccccH
Confidence 987653211100 1135799
Q ss_pred CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec
Q 011126 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS 426 (493)
Q Consensus 389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~ 426 (493)
.-|..++.-++..|++++.|++|++||+.+++++.++.
T Consensus 195 eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 195 EFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 99999999888789999999999999999999987774
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.50 E-value=1.5e-05 Score=79.62 Aligned_cols=240 Identities=13% Similarity=0.157 Sum_probs=139.1
Q ss_pred cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC-------------
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG------------- 306 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg------------- 306 (493)
.++++|.|.+|++....| |.+|......+ +.. + -...|..+.|+|+++||.+-+.-.
T Consensus 37 ~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~-l~~------~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 37 YVSESPLGTYLFSEHAAG-VECWGGPSKAK-LVR------F--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred heeecCcchheehhhccc-eEEccccchhh-eee------e--ecCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 378999999999987655 88998664432 211 1 224689999999999999865543
Q ss_pred --cEEEEecCCCeeeeeeeccCCC--Cc-eEEEeeCCCC-------ceeeeec----cC--------ccccceeeeecCC
Q 011126 307 --TVRVWKVIEHERLDGFDVQDTD--PS-CLYFTINHLS-------QLIPIDV----DK--------EKIDKTKSLRKSS 362 (493)
Q Consensus 307 --~V~iWdl~~~~~~~~~~~~~~~--~~-~~~~~~~~~~-------~~~~~~~----~~--------~~~~~~~~~~~s~ 362 (493)
.+.+||+.++..+..+...... .+ .+.|+.+... .+..... .. ..+........+.
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCC
Confidence 4999999999999888776555 33 3444443321 1111111 00 0011111111222
Q ss_pred CceEEEcCCCceeecc----------cceEEEecCCCCEeEEEEeCCC-eEEE-E---e-------CCCeEEEEECCCCc
Q 011126 363 DLTCVVLPPKVFRLLE----------KPLHEFQGHSSEVLDLSWSKNG-FLLS-S---S-------ADKTVRLWQVGIDR 420 (493)
Q Consensus 363 ~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~V~~l~~sp~g-~l~s-g---s-------~Dg~V~lWd~~~~~ 420 (493)
...+..|.+....... +++.+-.--...=..+.|.+.| +|+. . . ....+.|+++....
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 2234555443221110 1111111111222467888888 3321 1 1 12457788887443
Q ss_pred EEEEecCCCcEEEEEEccCCCCEEEEE--eCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 421 CLRVFSHNNYVTSVAFNPVDDNYFISG--SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 421 ~~~~~~h~~~V~~v~fsp~d~~~l~sg--s~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+-......++|...+|.| .++-|++. -.+..+.++|++.. +.+......-+.+.|+|.++++++++-++
T Consensus 267 i~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cceeccccccceeeeecc-cCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence 333335689999999999 66655543 46889999999877 33333344456677888888888776543
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.49 E-value=5.2e-05 Score=76.21 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=121.2
Q ss_pred EEeeecC----CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC----CCcEEEEecCCC--eee
Q 011126 250 LTLGQRM----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----DGTVRVWKVIEH--ERL 319 (493)
Q Consensus 250 lasgs~d----g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----Dg~V~iWdl~~~--~~~ 319 (493)
+++|+.. +.|.+|++......+.... .+ .-......|+++|++++|++..+ ++.|..|++... +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~---~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQ---TV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEE---EE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEee---ee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE
Confidence 3444444 7899998854444443221 21 13345567899999999999877 578999998764 322
Q ss_pred eeeeccCCCCceEEEeeCCCCce-eeeeccCccccceeeeecCCCceEEEcCCCc-eeecccceEEE----------ecC
Q 011126 320 DGFDVQDTDPSCLYFTINHLSQL-IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLLEKPLHEF----------QGH 387 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~----------~~h 387 (493)
..-.........+.+........ +..+.. .+.+.+++... ..+. .....+ ...
T Consensus 78 ~~~~~~~~g~~p~~i~~~~~g~~l~vany~--------------~g~v~v~~l~~~g~l~-~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 78 LLNSVPSGGSSPCHIAVDPDGRFLYVANYG--------------GGSVSVFPLDDDGSLG-EVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp EEEEEEESSSCEEEEEECTTSSEEEEEETT--------------TTEEEEEEECTTSEEE-EEEEEEESEEEESSTTTTS
T ss_pred EeeeeccCCCCcEEEEEecCCCEEEEEEcc--------------CCeEEEEEccCCcccc-eeeeecccCCCCCcccccc
Confidence 21111112222223333322222 222222 22222222211 0110 001111 012
Q ss_pred CCCEeEEEEeCCC-eEEE-EeCCCeEEEEECCCCc--EEE----EecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeC
Q 011126 388 SSEVLDLSWSKNG-FLLS-SSADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEV 458 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~s-gs~Dg~V~lWd~~~~~--~~~----~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl 458 (493)
.....++.++|+| ++++ .-....|.+|++.... ... .+........+.|+| +++++... -.+++|.++++
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEee
Confidence 3467899999998 4444 4455689999997655 322 223667789999999 88877554 45789999999
Q ss_pred C--CCeEE--E-ec----CC--CCCeEEEEEccCCCEEEEeec
Q 011126 459 R--RCQVV--D-YT----DI--REIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 459 ~--~~~~~--~-~~----~~--~~~I~sv~~spdG~~l~s~s~ 490 (493)
. ++.+. . .. .. ......|.++|||++|+++..
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 8 55432 1 11 11 226889999999999998764
No 273
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.48 E-value=0.0004 Score=66.19 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=133.3
Q ss_pred ceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEc-cCCCEEEEEECCCcEEEEecCCCee
Q 011126 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS-LDGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 241 ~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs-pdg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
..|.+ ++.++++-...+.|..|+........ +. ......+.+. +++ .|+.+...+ +.++|+.+++.
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------~~--~~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~ 72 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------ID--LPGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKV 72 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------EE--SSSEEEEEEECTTS-EEEEEETTC-EEEEETTTTEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------Ee--cCCCceEEEEccCC-EEEEEEcCc-eEEEecCCCcE
Confidence 56787 77777887788999999987654322 11 1227778888 565 555555554 56669988866
Q ss_pred eeeeecc--C-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 319 LDGFDVQ--D-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 319 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
....... . ......-........++............. .+.++.++.. .. +..+...-...+.|+
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~------~g~v~~~~~~-~~-----~~~~~~~~~~pNGi~ 140 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGID------PGSVYRIDPD-GK-----VTVVADGLGFPNGIA 140 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGG------SEEEEEEETT-SE-----EEEEEEEESSEEEEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccc------ccceEEECCC-Ce-----EEEEecCcccccceE
Confidence 5444442 1 222222333333344444333222111100 0333333333 11 222222345578999
Q ss_pred EeCCC--eEEEEeCCCeEEEEECCCCcE----EEEe---cCC-CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 396 WSKNG--FLLSSSADKTVRLWQVGIDRC----LRVF---SHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~----~~~~---~h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
|+|++ ++++-+..+.|..+++..... ...+ ... ...-.+++.. ++++.++.-..+.|.+++.. ++++.
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 99999 455778889999999863221 1222 222 3588999999 99999988889999999998 76664
Q ss_pred -ecCCCCCeEEEEE-ccCCCEEEEeec
Q 011126 466 -YTDIREIVSAVCY-CPDGKVRQNSAC 490 (493)
Q Consensus 466 -~~~~~~~I~sv~~-spdG~~l~s~s~ 490 (493)
+.-....+++++| -|+.+.|.+.++
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 3333368999999 477776665543
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.46 E-value=3e-05 Score=88.42 Aligned_cols=205 Identities=9% Similarity=0.081 Sum_probs=123.6
Q ss_pred cccceeccCCCeEEee-ecCCeEEEEECCCcccc-ccc-cccceeeecc-------cCCEEEEEEcc-CCCEEEEEECCC
Q 011126 238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRE-LSS-LYTGQEFLAH-------EGSILTMKFSL-DGQYLASGGEDG 306 (493)
Q Consensus 238 ~~~~~fsp~g~~lasg-s~dg~V~vwd~~~~~~~-~~~-~~~~~~l~~H-------~~~I~~l~fsp-dg~~Lasgs~Dg 306 (493)
...+++.+++..|+++ .....|++++..+.... +.. ......+.+. -..-+.|+|+| ++.++++...++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 3458899988765554 45678999987654321 000 0000000000 11235799999 566667777889
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
.|++||..++... .+.. .+.. . ...+. .. ...
T Consensus 706 ~I~v~d~~~g~v~-~~~G------------~G~~--~-----------------~~~g~---------------~~-~~~ 737 (1057)
T PLN02919 706 QIWEYNISDGVTR-VFSG------------DGYE--R-----------------NLNGS---------------SG-TST 737 (1057)
T ss_pred eEEEEECCCCeEE-EEec------------CCcc--c-----------------cCCCC---------------cc-ccc
Confidence 9999998765421 1100 0000 0 00000 00 001
Q ss_pred CCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEe-------------c-C--------CCcEEEEEEccCCCC
Q 011126 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-------------S-H--------NNYVTSVAFNPVDDN 442 (493)
Q Consensus 387 h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~-------------~-h--------~~~V~~v~fsp~d~~ 442 (493)
.-.....|+++|++ ++++-+.++.|++||+.++...... . + -.....++++| +++
T Consensus 738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~ 816 (1057)
T PLN02919 738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQ 816 (1057)
T ss_pred cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCc
Confidence 12345789999997 5566677899999999876532111 0 0 11346899999 899
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEecCCC--------------CCeEEEEEccCCCEEEEeecC
Q 011126 443 YFISGSIDGKVRIWEVRRCQVVDYTDIR--------------EIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 443 ~l~sgs~Dg~V~IWdl~~~~~~~~~~~~--------------~~I~sv~~spdG~~l~s~s~d 491 (493)
++++-..+++|++||..++.+....+.. .....|+++++|+++++-+.+
T Consensus 817 LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 817 IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 9999999999999999988776543221 257889999999977765543
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.45 E-value=3.2e-06 Score=85.61 Aligned_cols=145 Identities=19% Similarity=0.247 Sum_probs=113.1
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
+-..++-|...|.|.+|++........ -+-..|.+.|.++.++.+-..|.|++.|+.+..|+..+...+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~-----~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~----- 138 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAK-----LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR----- 138 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEE-----EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee-----
Confidence 445688899999999999876542211 0124699999999999999999999999999999987665432
Q ss_pred CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE
Q 011126 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s 404 (493)
.+.+....+..++.+|++ .|++
T Consensus 139 ---------------------------------------------------------~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 139 ---------------------------------------------------------IWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred ---------------------------------------------------------eeccCCCccceEEEcCCCCEEEe
Confidence 233445667889999999 8888
Q ss_pred EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCC-----CCEEEEE-eCCCeEEEEeCCC
Q 011126 405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD-----DNYFISG-SIDGKVRIWEVRR 460 (493)
Q Consensus 405 gs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d-----~~~l~sg-s~Dg~V~IWdl~~ 460 (493)
++ ++|++||+.+++.+.+|. |.++|.+++|.- . |.+|+++ ..+.-+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-LIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-eccccccceeeeccccccceeEEEEEc
Confidence 86 589999999999999997 999999999987 5 5666654 4455577786654
No 276
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.6e-06 Score=84.97 Aligned_cols=203 Identities=17% Similarity=0.135 Sum_probs=137.8
Q ss_pred eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEEecCCCeeeee
Q 011126 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDG 321 (493)
Q Consensus 243 fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iWdl~~~~~~~~ 321 (493)
+..-.+++.+++.||.++.|.-.. .........+.+|-+.|..++.+.+|.++.|.+. |..++++|+.+-..+.-
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm 91 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM 91 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence 444557899999999999997543 1222333456789999999999999999999887 99999999987766655
Q ss_pred eeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-
Q 011126 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g- 400 (493)
++....+..+..+. .....+. ...+....++.+.+++...-.. +....-.-|..+|.++.+++-+
T Consensus 92 iKL~~lPg~a~wv~-skGd~~s-----------~IAVs~~~sg~i~VvD~~~d~~--q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 92 IKLVDLPGFAEWVT-SKGDKIS-----------LIAVSLFKSGKIFVVDGFGDFC--QDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred cccccCCCceEEec-CCCCeee-----------eEEeecccCCCcEEECCcCCcC--ccceecccccCceEEEEeecccc
Confidence 55443333222221 1111111 1112223334444444432111 1223334599999999999998
Q ss_pred eEEEEeCCCeEEEEECCC------CcEEEEe----------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 401 FLLSSSADKTVRLWQVGI------DRCLRVF----------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~------~~~~~~~----------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
.+++....|.|.-|.... ......+ +.....+++.|+| ++..+.+-+.|.+|++++.++++++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence 888888889999998762 1111111 2456789999999 9999999999999999999998754
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.43 E-value=8.2e-07 Score=58.40 Aligned_cols=37 Identities=46% Similarity=0.934 Sum_probs=34.7
Q ss_pred cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEE
Q 011126 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ 415 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd 415 (493)
+++..+.+|...|++|+|+|++ +|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3578899999999999999998 999999999999997
No 278
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=0.00024 Score=68.58 Aligned_cols=236 Identities=13% Similarity=0.160 Sum_probs=139.8
Q ss_pred cccccceeccCCCeEEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEE
Q 011126 236 DRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVW 311 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iW 311 (493)
....-++|+|++++|.++.. .|.|..|.+......+..+. .+.+.++ +-..++++++|++|+++.+ -|.|.++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln-~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN-RQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee-ccccCCC--CCeEEEECCCCCEEEEEEccCceEEEE
Confidence 44455899999999988765 47888888876533333221 1122333 2378999999999999875 5789999
Q ss_pred ecCC-Ceeeee---eeccCC-------C--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 312 KVIE-HERLDG---FDVQDT-------D--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 312 dl~~-~~~~~~---~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
-+.. |..... +..... . .....+.+.+ ..++..+...+++...... ++. +..
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~----dg~----------L~~ 181 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLD----DGK----------LTP 181 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcc----cCc----------ccc
Confidence 9865 332211 111111 0 2222222222 1233333333332222111 111 111
Q ss_pred cceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC-cE---EEEe-------cCCCcEEEEEEccCCCCEEE
Q 011126 379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RC---LRVF-------SHNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~-~~---~~~~-------~h~~~V~~v~fsp~d~~~l~ 445 (493)
.....+ ........|.|+|++ ..+.+-.+++|.+|..... .. ++.+ ........|.++| +|++|.
T Consensus 182 ~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLY 259 (346)
T COG2706 182 ADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLY 259 (346)
T ss_pred cccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEE
Confidence 011112 234566889999999 4456667999999998763 22 2222 1446778899999 999999
Q ss_pred EEeC-CCeEEEEeCC--CCeEE--E-ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 446 SGSI-DGKVRIWEVR--RCQVV--D-YTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 446 sgs~-Dg~V~IWdl~--~~~~~--~-~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
++.. ...|.++.+. ++++. . +..+........|+|+|++|++++.+
T Consensus 260 asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 8754 2468888776 34433 3 33344447899999999999998754
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=98.33 Aligned_cols=161 Identities=19% Similarity=0.315 Sum_probs=114.9
Q ss_pred eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCC-CCceEEEeeCCCCceeeeeccCccccceeee
Q 011126 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (493)
Q Consensus 280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (493)
+..|-..|.+|.=+|...+.+||+.||.|++|....++.+..+..... .+..+.|+..+.. . .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk--~--------------~ 2267 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK--F--------------G 2267 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc--e--------------e
Confidence 345667788888899889999999999999999988887776655433 1222222222211 1 1
Q ss_pred ecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEE---eCCCeEEEEECCCCc---EEEEecCCCcEE
Q 011126 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS---SADKTVRLWQVGIDR---CLRVFSHNNYVT 432 (493)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sg---s~Dg~V~lWd~~~~~---~~~~~~h~~~V~ 432 (493)
....|+.+-+|... .++....+.|.....++.|-.. .++++ +.++.+.+||..-.. +++ -.|...++
T Consensus 2268 i~d~dg~l~l~q~~-----pk~~~s~qchnk~~~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT 2340 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQAS-----PKPYTSWQCHNKALSDFRFIGS-LLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGAT 2340 (2439)
T ss_pred eeccCCceeecccC-----CcceeccccCCccccceeeeeh-hhhccccCCCCCcccchhcccCcccceee-eecCCCce
Confidence 12233444444333 5667778889999999999764 45544 357889999975332 333 34999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 433 ~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
++++-| ..++|++|+.+|.|++||++..++.
T Consensus 2341 ~l~~~P-~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2341 VLAYAP-KHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred EEEEcC-cceEEEecCCcCcEEEeehHHHHHH
Confidence 999999 8999999999999999999987765
No 280
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=1.8e-06 Score=82.01 Aligned_cols=161 Identities=15% Similarity=0.235 Sum_probs=112.4
Q ss_pred eeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCce
Q 011126 252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC 331 (493)
Q Consensus 252 sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~ 331 (493)
+.+.+..|-+-++.++-. |.|. ..+.|.+++|...++++..|..+|.|...|+..... ...+
T Consensus 229 s~G~sqqv~L~nvetg~~--------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq--------G~~~- 290 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQ--------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ--------GNGW- 290 (425)
T ss_pred cccccceeEEEEeecccc--------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--------CCCc-
Confidence 344566677777764421 1233 677899999999899999999999999999976521 0000
Q ss_pred EEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC-CC-eEEEEeCCC
Q 011126 332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADK 409 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg 409 (493)
+.+. .-|...|+++..-. ++ +|++.+++|
T Consensus 291 ------------------------------------------------~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~g 321 (425)
T KOG2695|consen 291 ------------------------------------------------CAQR-LYHDSSVTSLQILQFSQQKLMASDMTG 321 (425)
T ss_pred ------------------------------------------------ceEE-EEcCcchhhhhhhccccceEeeccCcC
Confidence 1111 23788888887766 44 999999999
Q ss_pred eEEEEECCCCcE---EEEec-CCCcE--EEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC-----CeEEEEE
Q 011126 410 TVRLWQVGIDRC---LRVFS-HNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-----IVSAVCY 478 (493)
Q Consensus 410 ~V~lWd~~~~~~---~~~~~-h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~-----~I~sv~~ 478 (493)
+|++||++.-++ +..+. |-+.- .-+..+| ....+++++.|...|||.++.++++.....+. .+.+++|
T Consensus 322 kikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~ 400 (425)
T KOG2695|consen 322 KIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAF 400 (425)
T ss_pred ceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceeh
Confidence 999999997777 55543 43222 2234456 66788889999999999999999986554443 3556666
Q ss_pred cc
Q 011126 479 CP 480 (493)
Q Consensus 479 sp 480 (493)
..
T Consensus 401 ~s 402 (425)
T KOG2695|consen 401 DS 402 (425)
T ss_pred hc
Confidence 53
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.35 E-value=1.6e-06 Score=89.63 Aligned_cols=178 Identities=19% Similarity=0.293 Sum_probs=128.6
Q ss_pred ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCcEEEEecCCCeeeeee
Q 011126 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGF 322 (493)
Q Consensus 244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~V~iWdl~~~~~~~~~ 322 (493)
+|-..+-++......-.||++.+.......+ .+.+|..+|+.+.|+|.. ..|++++.|-.|..||+.+...
T Consensus 78 h~a~~~wiVsts~qkaiiwnlA~ss~~aIef----~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---- 149 (1081)
T KOG0309|consen 78 HPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF----VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---- 149 (1081)
T ss_pred CCCCceeEEecCcchhhhhhhhcCCccceEE----EEecCccceeccccCCCCCcceeeccccccceeeeccCCCc----
Confidence 4445566666667777889887554332222 367899999999999954 4899999999999999876432
Q ss_pred eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-e
Q 011126 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~ 401 (493)
|+..+..-...-..++|+-.. .
T Consensus 150 ---------------------------------------------------------p~ys~~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 150 ---------------------------------------------------------PFYSTSSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred ---------------------------------------------------------ceeeeecccccCceeeecccCcc
Confidence 111122223345678888765 6
Q ss_pred EEEEeCCCeEEEEECCCCc-EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe--EEEecCCCCCeEEEE
Q 011126 402 LLSSSADKTVRLWQVGIDR-CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVC 477 (493)
Q Consensus 402 l~sgs~Dg~V~lWd~~~~~-~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~--~~~~~~~~~~I~sv~ 477 (493)
+++.+..+-|++||++.+. ++..++ |...|+.+.|+......+.+++.||+|++||..... .........+|+.-+
T Consensus 173 vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r 252 (1081)
T KOG0309|consen 173 VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGR 252 (1081)
T ss_pred hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecc
Confidence 7777788899999998654 455554 888999999988667789999999999999997553 234555667888888
Q ss_pred EccCCCEEE
Q 011126 478 YCPDGKVRQ 486 (493)
Q Consensus 478 ~spdG~~l~ 486 (493)
|-|=|....
T Consensus 253 ~~Pfg~g~~ 261 (1081)
T KOG0309|consen 253 YLPFGEGYC 261 (1081)
T ss_pred ccccCceeE
Confidence 888776544
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.32 E-value=0.00017 Score=81.07 Aligned_cols=243 Identities=16% Similarity=0.183 Sum_probs=141.5
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCC-----------------------cccccc--------------ccc
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------------------QSRELS--------------SLY 275 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~-----------------------~~~~~~--------------~~~ 275 (493)
.....+.+++|+||+.+||..+.+++|.+-...= ++++-+ ...
T Consensus 118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 3445777899999999999999999887753210 000000 000
Q ss_pred c----ceeeecccCCEEEEEEccCCCEEEEEEC---C---CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeee
Q 011126 276 T----GQEFLAHEGSILTMKFSLDGQYLASGGE---D---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI 345 (493)
Q Consensus 276 ~----~~~l~~H~~~I~~l~fspdg~~Lasgs~---D---g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (493)
. ...+. +.+.-..|.|-.||.|+|+.+. . ..+|||+-. |.....-.....-..++.|.|.+.- +...
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~l-IA~~ 274 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNL-IASS 274 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCE-EEEE
Confidence 0 00122 4445678999999999998774 3 479999853 5544333322222334555555421 1111
Q ss_pred eccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--
Q 011126 346 DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL-- 422 (493)
Q Consensus 346 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~-- 422 (493)
. .......++.+.....+-.+ ....+......|..|+|++++ .||..-.|. |.+|-..+..-.
T Consensus 275 q------------~~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 275 Q------------RLPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred E------------EcCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence 1 11112334444333222111 111112345688999999999 777766555 999998876532
Q ss_pred EEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC----CC---------eE-------EE---------------
Q 011126 423 RVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RC---------QV-------VD--------------- 465 (493)
Q Consensus 423 ~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~----~~---------~~-------~~--------------- 465 (493)
+.+ .....+..+.|+|.+...|...+.+|.+.+++.. .+ .+ +.
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~ 420 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS 420 (928)
T ss_pred EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence 222 2344566699999888888888887777665542 11 00 00
Q ss_pred -ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 466 -YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 466 -~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
......+|.+++|++++..+++-.+|+
T Consensus 421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~ 448 (928)
T PF04762_consen 421 YELELPSPVNDVAFSPSNSRFAVLTSDG 448 (928)
T ss_pred eEEcCCCCcEEEEEeCCCCeEEEEECCC
Confidence 122456799999999997666665554
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.30 E-value=4.9e-05 Score=86.72 Aligned_cols=183 Identities=9% Similarity=0.070 Sum_probs=111.8
Q ss_pred ccceecc-CCCeEEeeecCCeEEEEECCCccccccccc-cceeeec------ccCCEEEEEEccCCCEE-EEEECCCcEE
Q 011126 239 GSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLY-TGQEFLA------HEGSILTMKFSLDGQYL-ASGGEDGTVR 309 (493)
Q Consensus 239 ~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~-~~~~l~~------H~~~I~~l~fspdg~~L-asgs~Dg~V~ 309 (493)
..++|+| ++.++++...+++|++|+........-... ......+ .-...+.|+|+|+|++| ++-..++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 3489999 566777777889999999865432110000 0000011 11245679999999855 4555678999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+||+.++....... ...... ..+..+ +..++. . ....-.
T Consensus 766 v~D~~tg~~~~~~g--g~~~~~--------~~l~~f--------------G~~dG~---------------g--~~~~l~ 804 (1057)
T PLN02919 766 ALDLKTGGSRLLAG--GDPTFS--------DNLFKF--------------GDHDGV---------------G--SEVLLQ 804 (1057)
T ss_pred EEECCCCcEEEEEe--cccccC--------cccccc--------------cCCCCc---------------h--hhhhcc
Confidence 99987664211000 000000 000000 000000 0 000112
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC--------------CCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--------------NNYVTSVAFNPVDDNYFISGSIDGKVR 454 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h--------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (493)
....++++++| ++++-..+++|++||..++........ -.....|+++| +++++++-+.++.|+
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIR 883 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEE
Confidence 24588999999 888888999999999988776654431 13578899999 999999999999999
Q ss_pred EEeCCCCeE
Q 011126 455 IWEVRRCQV 463 (493)
Q Consensus 455 IWdl~~~~~ 463 (493)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999998765
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=7.6e-07 Score=89.04 Aligned_cols=158 Identities=18% Similarity=0.327 Sum_probs=112.8
Q ss_pred eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe-eeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (493)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (493)
+.+.||+..|..+.--.+.+-+++++.|++|++|.+.... .+. .
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~--------t--------------------------- 773 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG--------T--------------------------- 773 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc--------c---------------------------
Confidence 3578999999999887788889999999999999985321 000 0
Q ss_pred eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEE
Q 011126 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVT 432 (493)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~ 432 (493)
..+..++..|..+|.++.|-.+. +++++ |+-|++||.--++.+.... ..+.++
T Consensus 774 ---------------------saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~ 830 (1034)
T KOG4190|consen 774 ---------------------SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGG 830 (1034)
T ss_pred ---------------------ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCc
Confidence 01134567899999999998876 55554 8999999988887776442 223333
Q ss_pred EEEEccC-CCCEEEEE-eCCCeEEEEeCCCCeEEE-e-----cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 433 SVAFNPV-DDNYFISG-SIDGKVRIWEVRRCQVVD-Y-----TDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 433 ~v~fsp~-d~~~l~sg-s~Dg~V~IWdl~~~~~~~-~-----~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.|.--|. +..+++.| +...+|+++|.+.+..+. | ......+.+++..|.|++++++=+++|
T Consensus 831 ~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc 899 (1034)
T KOG4190|consen 831 NIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC 899 (1034)
T ss_pred eeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc
Confidence 3433332 44455555 778999999999887552 2 344567899999999999988766655
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.23 E-value=5.6e-06 Score=76.01 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=61.5
Q ss_pred CEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 390 ~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
.|++++-+|.. ++++|+.||.+-|||++.......+ .|+.+++-|.|+|.++..|.+++.||.+.-||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 38888888876 8889999999999999977443332 39999999999999999999999999999999874
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=4.9e-06 Score=79.19 Aligned_cols=139 Identities=17% Similarity=0.270 Sum_probs=99.2
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCC
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
|-+..|+..++++..|.+.|.|.+.|++....- ...+.+.+ -|.+.|++|+.-. ++++|.+.+.+|+|++||+.--
T Consensus 255 VfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG--~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 255 VFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG--NGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred HHHHHhcccCCeeEecccCCcEEEEEeeecccC--CCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 344678889999999999999999999865321 12223333 3899999998877 7889999999999999998644
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE-
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS- 395 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~- 395 (493)
++. +-+.++.||-+.-.-+-
T Consensus 332 K~~-----------------------------------------------------------~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 332 KCK-----------------------------------------------------------KSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred hcc-----------------------------------------------------------cceeeeeccccccccccc
Confidence 331 11444556654333222
Q ss_pred -EeCC-CeEEEEeCCCeEEEEECCCCcEEEEecCC-----CcEEEEEEcc
Q 011126 396 -WSKN-GFLLSSSADKTVRLWQVGIDRCLRVFSHN-----NYVTSVAFNP 438 (493)
Q Consensus 396 -~sp~-g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~-----~~V~~v~fsp 438 (493)
..+. |.+++++.|...|||.++.+..+.++... ..+.+++|..
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 2333 38888999999999999999999988633 3455566543
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.22 E-value=0.00015 Score=81.43 Aligned_cols=229 Identities=14% Similarity=0.197 Sum_probs=138.3
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEEC----CCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPV----KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~----~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
+.+.++.+-++...++.+..+|.|.+... .....+. ...-...|.+++||||+..|+....+++|.+-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI--------VGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE--------EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 45556788889999999999999999943 3222211 12246789999999999999999989988877
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEE--EcCCCceeecccceEEEecCCC
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV--VLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
. .+...+........... ....+.++|+++... +.++...... .-++.... .....+. +..
T Consensus 148 t-~~fd~i~E~~l~~~~~~--------~~~~VsVGWGkKeTQ----F~Gs~gK~aa~~~~~p~~~~---~d~~~~s-~dd 210 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFG--------ESKHVSVGWGKKETQ----FHGSAGKAAARQLRDPTVPK---VDEGKLS-WDD 210 (928)
T ss_pred e-ccceEEEEeecCccccC--------CCceeeeccCcccCc----cCcchhhhhhhhccCCCCCc---cccCccc-cCC
Confidence 5 45555554444322211 122233333332211 1111110000 00000000 0011222 445
Q ss_pred CEeEEEEeCCC-eEEEEeC---C---CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC---CCeEEEEeC
Q 011126 390 EVLDLSWSKNG-FLLSSSA---D---KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV 458 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~---D---g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~IWdl 458 (493)
.-..|+|-.|| ++|..+. . ..||||+-. |....+-. -.+--.+++|.| .|++||+.-. ...|.+|.-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 66789999999 8887764 2 579999965 54433332 233345789999 9999998765 356788876
Q ss_pred CCCeEEE----ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 459 RRCQVVD----YTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 459 ~~~~~~~----~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+.-+.-. +......|..+.|++|+.+|++--.+
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 5433322 22455689999999999999986543
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.21 E-value=0.00019 Score=66.46 Aligned_cols=219 Identities=11% Similarity=-0.020 Sum_probs=121.1
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
...+||.|+..|...+|...+....+. ....|...|.-+.=.. ....+..++.|.++++.++.-+........
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCccccee------eecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec
Confidence 345799999999999999875543222 1122333332222111 223567788999999998865543333222
Q ss_pred cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE-EEecCCCCEeEEEEeCCC-eE
Q 011126 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKNG-FL 402 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~g-~l 402 (493)
+......+.+..++ .+....-+. .+...+-.+..... .+. ........-.+..|+... .+
T Consensus 157 ~~~~~ns~~~snd~--~~~~~Vgds------------~~Vf~y~id~~sey----~~~~~~a~t~D~gF~~S~s~~~~~F 218 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDP--SWGSSVGDS------------RRVFRYAIDDESEY----IENIYEAPTSDHGFYNSFSENDLQF 218 (344)
T ss_pred cccceeeeEEcCCC--ceEEEecCC------------CcceEEEeCCccce----eeeeEecccCCCceeeeeccCcceE
Confidence 21111122222111 111111111 11111111111110 111 122234445678899988 99
Q ss_pred EEEeCCCeEEEEECCCCcEEEEe------cCCCcEEEEEEccCCCC--EEEEEeCCCeEEEEeCCCCeE---EE-----e
Q 011126 403 LSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQV---VD-----Y 466 (493)
Q Consensus 403 ~sgs~Dg~V~lWd~~~~~~~~~~------~h~~~V~~v~fsp~d~~--~l~sgs~Dg~V~IWdl~~~~~---~~-----~ 466 (493)
|++..||++.|||++........ .|.+.+..+.|+| .|. +|...-.=+.+.+-|+++++- +. .
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~ 297 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE 297 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCcccc
Confidence 99999999999999865433322 2899999999997 332 344444457899999998753 32 2
Q ss_pred cCCCC-CeEEEEEccCCCEEEEee
Q 011126 467 TDIRE-IVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 467 ~~~~~-~I~sv~~spdG~~l~s~s 489 (493)
..|.. .|..-+|+.++..+.+..
T Consensus 298 ~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 298 RKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ccccccccccccccCCCccccccc
Confidence 22333 378888888877665544
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=4.6e-06 Score=85.99 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=111.7
Q ss_pred ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (493)
Q Consensus 283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 362 (493)
......|+.|+....|+|.||.||.++|..+.+...-........ +.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa-~s-------------------------------- 59 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAA-AS-------------------------------- 59 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccc-cc--------------------------------
Confidence 345688999999999999999999999998865432111100000 00
Q ss_pred CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe---cCCCcEEEEEEcc
Q 011126 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNP 438 (493)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~---~h~~~V~~v~fsp 438 (493)
.-..-+++.||...|.-+.|+.+. .|.|+..+|.|.||-+-.+.-...+ ...+-|.+++|+.
T Consensus 60 --------------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~ 125 (1189)
T KOG2041|consen 60 --------------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL 125 (1189)
T ss_pred --------------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC
Confidence 001245688999999999999987 8999999999999998877544333 2667899999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126 439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 439 ~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s 487 (493)
+|..+...-.||.|.|=.+...++....-.......+.|++|.+.++.
T Consensus 126 -dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 126 -DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF 173 (1189)
T ss_pred -CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence 999999999999888877776655421111123446778888765543
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.00019 Score=73.86 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=65.2
Q ss_pred CCEeEEEEeCCC--eEEEEeCC--CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-C--eEEEEeCCCC
Q 011126 389 SEVLDLSWSKNG--FLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRC 461 (493)
Q Consensus 389 ~~V~~l~~sp~g--~l~sgs~D--g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~IWdl~~~ 461 (493)
+......|+|+| ++++.+.+ ..|.++|+.++.......+........|+| ||+.|+-.+.. | .|+++|+.++
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 334456799998 44444434 568888988876544433444445678999 99877766542 3 6888899888
Q ss_pred eEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 462 QVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+.......... ...|+|||+.|+..+.
T Consensus 312 ~~~rlt~~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 312 SVEQVVFHGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CeEeCccCCCc--CceECCCCCEEEEEEc
Confidence 77554322221 2489999999887654
No 291
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.17 E-value=2.5e-05 Score=74.45 Aligned_cols=199 Identities=17% Similarity=0.252 Sum_probs=113.9
Q ss_pred eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec-CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV-IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (493)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (493)
+.+.||.+.|+....-|-..-+++.+.|.++|||-- ..++.-..+.. ..+..+-..........+.+....+.+....
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 457899999999999887778999999999999953 33333222222 1222222222222222222222222111110
Q ss_pred eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEE-----------------------
Q 011126 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVR----------------------- 412 (493)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~----------------------- 412 (493)
. +.+.. .....+....|...|..+-|+-.- .+++.+.|+.+.
T Consensus 97 ~---sedfn-----------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 97 L---SEDFN-----------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred h---hhhhh-----------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 0 00000 001122333455555555444333 444444443321
Q ss_pred ----------------EEEC--CCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe--EEEecCCCC
Q 011126 413 ----------------LWQV--GIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIRE 471 (493)
Q Consensus 413 ----------------lWd~--~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~--~~~~~~~~~ 471 (493)
+-.+ ..-..+.++ .|.+.+++++|.| ...+|.+|..|..|.+||+..++ .....+|..
T Consensus 163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 1111 111223333 3999999999999 88999999999999999997654 445788888
Q ss_pred CeEEEEEccCCCEEEEeecCC
Q 011126 472 IVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 472 ~I~sv~~spdG~~l~s~s~d~ 492 (493)
.|..+++-+--+.+++.+.|.
T Consensus 242 kV~~l~~~~~t~~l~S~~edg 262 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDG 262 (404)
T ss_pred hhhhhhhhhhheeeeeccCCC
Confidence 888888888777777766553
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=2.6e-06 Score=89.67 Aligned_cols=205 Identities=17% Similarity=0.216 Sum_probs=126.4
Q ss_pred ccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCc
Q 011126 271 LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE 350 (493)
Q Consensus 271 ~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (493)
++.+.....|..|+...+|++|+-+.++|+.|+..|.|+++++.+|......+.|...+..+.-..++...+....+...
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 44555566788899999999999999999999999999999999999888888887766655544444333332222210
Q ss_pred ccccee-------------------------eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE
Q 011126 351 KIDKTK-------------------------SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (493)
Q Consensus 351 ~~~~~~-------------------------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s 404 (493)
....+. .+.+.......+++........+.+....+..-.-++..|+|+. +++
T Consensus 1168 lsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 000000 01111222333343332222111111111222223677899987 443
Q ss_pred EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCE
Q 011126 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV 484 (493)
Q Consensus 405 gs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~ 484 (493)
.|| .+||++..+.++.|..-..-..-.|+| +|+-++.-+ .|||+++.+++.....-+ -..|.|+..|..
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP-~g~eVIINS-----EIwD~RTF~lLh~VP~Ld-qc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHP-SGNEVIINS-----EIWDMRTFKLLHSVPSLD-QCAVTFNSTGDV 1315 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheecccccccC-CCceEEeec-----hhhhhHHHHHHhcCcccc-ceEEEeccCccc
Confidence 244 489999999998887333334567999 888777743 599999988775333222 356788888876
Q ss_pred EEE
Q 011126 485 RQN 487 (493)
Q Consensus 485 l~s 487 (493)
++.
T Consensus 1316 mYa 1318 (1516)
T KOG1832|consen 1316 MYA 1318 (1516)
T ss_pred hhh
Confidence 653
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.10 E-value=0.00022 Score=66.04 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=72.1
Q ss_pred EeEEEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE-E
Q 011126 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-V 464 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~-~ 464 (493)
+..+++++++ ++++.+....|-.|.+.... .+++. ...+.-.+..|+. ....||++..||++.|||++.-.. .
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccch
Confidence 7789999999 88888888999999886432 22312 2556667889998 888999999999999999996432 2
Q ss_pred -----EecCCCCCeEEEEEccCCC
Q 011126 465 -----DYTDIREIVSAVCYCPDGK 483 (493)
Q Consensus 465 -----~~~~~~~~I~sv~~spdG~ 483 (493)
.-..|.+.+..+.|+|-|.
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCc
Confidence 2456889999999998664
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00095 Score=71.00 Aligned_cols=204 Identities=15% Similarity=0.190 Sum_probs=116.9
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCC-EEEEEEccCCCEEEEEECCCc-----EEEEecC
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGT-----VRVWKVI 314 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~-----V~iWdl~ 314 (493)
-++++++..+|.|+.+|.|.+.+-. +...+.+++|... |..+....+..+|++.++|+. |+||++.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s--------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS--------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc--------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4689999999999999999988743 2222457788877 444444434468888888765 8999986
Q ss_pred CCeeeeeeeccCCCCceE---EEee--CC--CCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 315 EHERLDGFDVQDTDPSCL---YFTI--NH--LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~---~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
..+.- ..+.|+ ...+ ++ ......+..... ....+.+-.++.+..+...+.+-......-....
T Consensus 101 k~~~n-------~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~---l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 101 KVDKN-------NSPQCLYEHRIFTIKNPTNPSPASSLAVSED---LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG 170 (933)
T ss_pred ccCCC-------CCcceeeeeeeeccCCCCCCCcceEEEEEcc---ccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence 43210 001111 0000 00 111111111111 1122233344445444443333222222223334
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE-EEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~-~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
..+|+.+++..++ -++-...-..|.+|.+....+ +.++. |+..++|..|++..+. |++++ +.-|.+|+....++.
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPC 248 (933)
T ss_pred CCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCccee
Confidence 6799999999888 323333456799999985542 34344 8889999999983333 44443 445999999865544
No 295
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.01 E-value=0.00031 Score=72.00 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=74.6
Q ss_pred cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE-
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV- 463 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~- 463 (493)
.....|.+.+++|+. .|+.|+.||.|.+||...+..... .+.-.++.++|+| +|.+|++|+..|.+.+||+.-..+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence 467789999999998 999999999999999987744433 4566788999999 999999999999999999864321
Q ss_pred -------------E---EecCCCCCeEEEEEccCC
Q 011126 464 -------------V---DYTDIREIVSAVCYCPDG 482 (493)
Q Consensus 464 -------------~---~~~~~~~~I~sv~~spdG 482 (493)
+ .+..+...+..+.|.+..
T Consensus 335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred eeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 1 123445567777887543
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00059 Score=72.01 Aligned_cols=181 Identities=13% Similarity=0.273 Sum_probs=114.7
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
.++.|+.|+..|.|++.+...... +...|... ..+|.|++||+.||+|.|-.+.+.+....+..+
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~---------~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~ 112 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPK---------TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK 112 (846)
T ss_pred hcceeeeccccceEEEEecCCccc---------cccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence 356899999999999998764421 12334443 568999999999999999999888776655544
Q ss_pred CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEE
Q 011126 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS 405 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sg 405 (493)
. ++..+++.++- .+......+.++..+ ++++..+.+. ....+ .+....++|.++.|..+ ++|=+
T Consensus 113 r-piksial~Pd~-----------~~~~sk~fv~GG~ag-lvL~er~wlg-nk~~v-~l~~~eG~I~~i~W~g~-lIAWa 176 (846)
T KOG2066|consen 113 R-PIKSIALHPDF-----------SRQQSKQFVSGGMAG-LVLSERNWLG-NKDSV-VLSEGEGPIHSIKWRGN-LIAWA 176 (846)
T ss_pred C-cceeEEeccch-----------hhhhhhheeecCcce-EEEehhhhhc-Cccce-eeecCccceEEEEecCc-EEEEe
Confidence 2 23344443331 011222233344444 4443333222 22222 45556789999999754 66666
Q ss_pred eCCCeEEEEECCCCcEEEEec-------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 406 SADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 406 s~Dg~V~lWd~~~~~~~~~~~-------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
+.+| |+|||+.+++.+..+. .......+.|.+ ...|+.|= .-+|+|..++.+
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGW-GDSVKICSIKKR 235 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC--CCeEEEec-CCeEEEEEEecc
Confidence 6555 8999999998887775 223456688876 44556654 447999988833
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.98 E-value=0.00096 Score=66.40 Aligned_cols=102 Identities=9% Similarity=0.082 Sum_probs=86.1
Q ss_pred cCCCCEeEEEEeCCC-eEEEEeCCC-eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs~Dg-~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
+|.+.|.-..+.-++ -++.|..|| .+-|+|..+++..+....-+.|.++..+| +|.+++.+.....|.+.|+.++.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe
Confidence 456667776676666 788888888 89999999998877777888999999999 999999999999999999999987
Q ss_pred EEe-cCCCCCeEEEEEccCCCEEEEe
Q 011126 464 VDY-TDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 464 ~~~-~~~~~~I~sv~~spdG~~l~s~ 488 (493)
... ....+.|+.+.|||+++++|-+
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYa 461 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYA 461 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEe
Confidence 654 3445679999999999999865
No 298
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.98 E-value=0.00015 Score=77.12 Aligned_cols=177 Identities=16% Similarity=0.211 Sum_probs=128.2
Q ss_pred cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 245 p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
-++..++.|+-...+..+|+.+.... +...-..+.|.-|+. ++++|.+|...|+|.+-|..+.+.
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~-------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~------ 209 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKET-------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFET------ 209 (1118)
T ss_pred cCCcceeecchhhheeeeecccceee-------eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCce------
Confidence 35567777877777878887644321 111222334666665 588999999999999998865543
Q ss_pred cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEE
Q 011126 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLS 404 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~s 404 (493)
++++..|++.|.++....+ .|++
T Consensus 210 --------------------------------------------------------iht~~aHs~siSDfDv~GN-lLit 232 (1118)
T KOG1275|consen 210 --------------------------------------------------------IHTFDAHSGSISDFDVQGN-LLIT 232 (1118)
T ss_pred --------------------------------------------------------eeeeeccccceeeeeccCC-eEEE
Confidence 5667788888887766433 7777
Q ss_pred Ee---------CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEe---CCCC--eEEEecCCC
Q 011126 405 SS---------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE---VRRC--QVVDYTDIR 470 (493)
Q Consensus 405 gs---------~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd---l~~~--~~~~~~~~~ 470 (493)
|+ .|..|+|||++..+.+..+.......-+.|+|.-...++.++..|...+-| +.+. .+.......
T Consensus 233 CG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~ 312 (1118)
T KOG1275|consen 233 CGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG 312 (1118)
T ss_pred eecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC
Confidence 75 467899999999988888874444577899997778899999999999999 4333 222344445
Q ss_pred CCeEEEEEccCCCEEEEeecCCC
Q 011126 471 EIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 471 ~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
..+.+++++++|+.++.+-.+++
T Consensus 313 s~i~~fDiSsn~~alafgd~~g~ 335 (1118)
T KOG1275|consen 313 SGISAFDISSNGDALAFGDHEGH 335 (1118)
T ss_pred CcceeEEecCCCceEEEecccCc
Confidence 56999999999999999876653
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.00017 Score=75.43 Aligned_cols=151 Identities=17% Similarity=0.255 Sum_probs=113.0
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC------C------CEEEEEECC
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------G------QYLASGGED 305 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g------~~Lasgs~D 305 (493)
.+++.|+|.| ++|.|+. ..|.|-|.. .+...|.+..|+..|+.++|.|- + -+||++...
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 3457888887 5566654 457777754 34456678889999999999872 1 257788888
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
|.|.+||...+.. +..+.
T Consensus 89 GrIil~d~~~~s~--------------------------------------------------------------~~~l~ 106 (1062)
T KOG1912|consen 89 GRIILVDFVLASV--------------------------------------------------------------INWLS 106 (1062)
T ss_pred CcEEEEEehhhhh--------------------------------------------------------------hhhhc
Confidence 9999999865432 22244
Q ss_pred cCCCCEeEEEEeCCC-----eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 386 GHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-----~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
.|..++.+++|-+.. .|++-....+|.+|+..+|+.+.... ...+..|+.+.|.+.+.|..-+..|.|.+-+.-
T Consensus 107 ~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 107 HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 567778888887632 67777778899999999999888776 345667799999999999998999998888764
No 300
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.92 E-value=0.0074 Score=60.14 Aligned_cols=79 Identities=10% Similarity=0.128 Sum_probs=62.9
Q ss_pred CCCEeEEEEeCCC-eEEEEe----------CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCC-EEEEEe-CCCeEE
Q 011126 388 SSEVLDLSWSKNG-FLLSSS----------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVR 454 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs----------~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs-~Dg~V~ 454 (493)
.+.+.-++++|++ +++... ..+.|.++|..+++.+..+.-...+..|+++| |++ +|++.. .++.|.
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~-Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQ-DAKPLLYALSTGDKTLY 325 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECC-CCCeEEEEeCCCCCcEE
Confidence 3444459999998 444421 22589999999999999999888999999999 888 777665 578899
Q ss_pred EEeCCCCeEEEec
Q 011126 455 IWEVRRCQVVDYT 467 (493)
Q Consensus 455 IWdl~~~~~~~~~ 467 (493)
|.|+.+++.+...
T Consensus 326 ViD~~t~k~i~~i 338 (352)
T TIGR02658 326 IFDAETGKELSSV 338 (352)
T ss_pred EEECcCCeEEeee
Confidence 9999999888644
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.85 E-value=6.2e-05 Score=78.25 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=115.5
Q ss_pred cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccC--CCCceEEEeeCCCCceeeeeccCccccceeeeecC
Q 011126 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (493)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 361 (493)
.+++.++..+|.|+-+|.++.-| +.+-|+...-....+-.+. -.+....|++........+.+...+...+.. ..+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl-A~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL-AKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh-hcC
Confidence 46788899999999999988877 5666765433222221111 1223344555444444444444433322222 222
Q ss_pred CCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-EEEEec-CCCcEEEEEEc
Q 011126 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-CLRVFS-HNNYVTSVAFN 437 (493)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-~~~~~~-h~~~V~~v~fs 437 (493)
.+..+ -..+.||...|+++.|+|+. .+++++.|-.|..||+++.. ++..+. -....+.|.|+
T Consensus 102 s~~aI--------------ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 102 SSNAI--------------EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred Cccce--------------EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 22211 23467999999999999987 99999999999999999754 444443 44566789999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCe-EE-EecCCCCCeEEEEEc
Q 011126 438 PVDDNYFISGSIDGKVRIWEVRRCQ-VV-DYTDIREIVSAVCYC 479 (493)
Q Consensus 438 p~d~~~l~sgs~Dg~V~IWdl~~~~-~~-~~~~~~~~I~sv~~s 479 (493)
-.++..+|+ +....|++||++.+. ++ ...+|...|+.+.|.
T Consensus 168 yk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn 210 (1081)
T KOG0309|consen 168 YKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN 210 (1081)
T ss_pred ccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHh
Confidence 977776665 566779999999764 33 456666667666654
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.83 E-value=6.4e-05 Score=69.22 Aligned_cols=72 Identities=17% Similarity=0.434 Sum_probs=59.2
Q ss_pred CEEEEEEccC-CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126 286 SILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (493)
Q Consensus 286 ~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 364 (493)
.|.+++-+|. .+++++|+.||.+.+||.+...
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~----------------------------------------------- 213 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA----------------------------------------------- 213 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc-----------------------------------------------
Confidence 3999999995 4567788899999999986542
Q ss_pred eEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC
Q 011126 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI 418 (493)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~ 418 (493)
.|...+..|..+|..+.|+|.+ .|++++.||.+.-||..+
T Consensus 214 --------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 214 --------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 1234467799999999999987 999999999999999874
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.82 E-value=0.0016 Score=61.22 Aligned_cols=182 Identities=15% Similarity=0.169 Sum_probs=101.1
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-cccCCEEEEEEccCC------CEEEEEECCCcEEEEec
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDG------QYLASGGEDGTVRVWKV 313 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg------~~Lasgs~Dg~V~iWdl 313 (493)
++|+||+.+||.+...|+|+|+|+-....- .+.....+. .-..+|-.|.|.+.. ..|+.-.++|.++-|-+
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf--~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSELF--VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccceeE--EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 899999999999999999999998753321 111111111 234578888886532 25666778888888876
Q ss_pred CCC-----eeeeeeeccC---CCCceEEEeeCCCCceeeeeccCcc-----------ccceeeeecCCCceEEEcC-CCc
Q 011126 314 IEH-----ERLDGFDVQD---TDPSCLYFTINHLSQLIPIDVDKEK-----------IDKTKSLRKSSDLTCVVLP-PKV 373 (493)
Q Consensus 314 ~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~~~~-~~~ 373 (493)
..+ +....+.... ..+..+.+.+.+. ++.++-.... +..++.+........+.-. ...
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~--LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR--LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCC--EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 432 2233333322 2344444444442 3222211111 1111222211111111100 000
Q ss_pred ------eeeccc-ceEEE---ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec
Q 011126 374 ------FRLLEK-PLHEF---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS 426 (493)
Q Consensus 374 ------~~~~~~-~~~~~---~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~ 426 (493)
..+... ....+ ......|..|..||+| .|++...+|.|.||++.+-+.++.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 000000 11111 1245689999999999 99999999999999999888777765
No 304
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.82 E-value=0.00014 Score=68.58 Aligned_cols=152 Identities=16% Similarity=0.300 Sum_probs=95.2
Q ss_pred ecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeec
Q 011126 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (493)
Q Consensus 281 ~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (493)
.+|.--|++|.|+.|...++++ .|-.|.+|++........
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFn--------------------------------------- 208 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFN--------------------------------------- 208 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceE---------------------------------------
Confidence 4677788999999888888776 466788998743221000
Q ss_pred CCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-E---EEEec--------
Q 011126 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-C---LRVFS-------- 426 (493)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-~---~~~~~-------- 426 (493)
+.+.+ -+.+..-..-|++..|+|.. .+.-.+..|.|++-|++... | .+.+.
T Consensus 209 -------IVDiK--------P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~ 273 (460)
T COG5170 209 -------IVDIK--------PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV 273 (460)
T ss_pred -------EEecc--------CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence 00000 01111223457788899975 67777788999999998321 1 11111
Q ss_pred -----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe-EEEec-CC------------CCCe---EEEEEccCCCE
Q 011126 427 -----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYT-DI------------REIV---SAVCYCPDGKV 484 (493)
Q Consensus 427 -----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~-~~~~~-~~------------~~~I---~sv~~spdG~~ 484 (493)
....|..+.|+| +|+|+++-.. -+|+|||++..+ ++... -| .+.| ..+.|+-|.+.
T Consensus 274 ~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~ 351 (460)
T COG5170 274 DFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKH 351 (460)
T ss_pred hhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccc
Confidence 234678899999 9999998654 479999998543 33211 11 1222 35678888777
Q ss_pred EEEee
Q 011126 485 RQNSA 489 (493)
Q Consensus 485 l~s~s 489 (493)
+++|+
T Consensus 352 v~sgs 356 (460)
T COG5170 352 VLSGS 356 (460)
T ss_pred ccccc
Confidence 77765
No 305
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.82 E-value=0.0037 Score=59.24 Aligned_cols=191 Identities=14% Similarity=0.164 Sum_probs=97.3
Q ss_pred eecccCCEEEEEEccCCC-EEEEEECCCcEEEEecCCCeeeeeeeccCC-CCceEEEeeCCCCceeeeeccCccccceee
Q 011126 280 FLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (493)
Q Consensus 280 l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (493)
+.+-...+..|.|+|+.. ++++....+.|...+. +|+.+..+..... ..-.+.+..+ ..++... +
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~-E--------- 83 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSE-E--------- 83 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEE-T---------
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEE-c---------
Confidence 444455699999999755 5666777888888886 5788877766542 2333333211 1111111 1
Q ss_pred eecCCCceEEEcCC----Cceeecc-cc--eEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC---CcEEEEec
Q 011126 358 LRKSSDLTCVVLPP----KVFRLLE-KP--LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS 426 (493)
Q Consensus 358 ~~~s~~~~~~~~~~----~~~~~~~-~~--~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~---~~~~~~~~ 426 (493)
....++.+.. ....... +. +.....+...+-.|+|.|.+ .|+.+-...-.+||.+.. ...+....
T Consensus 84 ----r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 84 ----RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ----TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred ----CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 1111211111 0000000 00 01112355678999999986 666667777777777654 22222211
Q ss_pred ---------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC----------CCCeEEEEEccCCCEEEE
Q 011126 427 ---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI----------REIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 427 ---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~----------~~~I~sv~~spdG~~l~s 487 (493)
....+.+++++|..+.+++.......|.++| .+|+++..... -...-.|+|.|+|++.++
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 4456899999998888889988999999999 56666532111 135789999999988777
Q ss_pred e
Q 011126 488 S 488 (493)
Q Consensus 488 ~ 488 (493)
+
T Consensus 239 s 239 (248)
T PF06977_consen 239 S 239 (248)
T ss_dssp E
T ss_pred c
Confidence 6
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0009 Score=65.38 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=60.3
Q ss_pred eecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCcEEEE
Q 011126 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVW 311 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~V~iW 311 (493)
+...+..++|+|..+ ++..++.+..|+|.|+.... ..+.+.+| ..+++++|.-|. ++|+.|-..|.|.||
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 334555689999988 78889999999999988554 33346667 789999998854 588888899999999
Q ss_pred ecCCCe
Q 011126 312 KVIEHE 317 (493)
Q Consensus 312 dl~~~~ 317 (493)
|+...+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 996543
No 307
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.81 E-value=0.0021 Score=65.33 Aligned_cols=243 Identities=13% Similarity=0.143 Sum_probs=125.3
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccc-----cc-------------------------------cccceeee
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSREL-----SS-------------------------------LYTGQEFL 281 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~-----~~-------------------------------~~~~~~l~ 281 (493)
+..+.|.++..-|++|...|.|.||.+.+.+..- .. +.+..-+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 4558899999999999999999999775432110 00 00111234
Q ss_pred cccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccC--------CCCceEEEeeCCCCceeeeeccCcccc
Q 011126 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD--------TDPSCLYFTINHLSQLIPIDVDKEKID 353 (493)
Q Consensus 282 ~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (493)
...++|++++.|.=| ++|.|.++|.+.|.|++....+..-.... ..+.++.|. .+....+...
T Consensus 84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~--------vm~~~~D~yS 154 (395)
T PF08596_consen 84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS--------VMTLGGDGYS 154 (395)
T ss_dssp --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE--------EEE-TTSSSE
T ss_pred ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE--------EEecCCCccc
Confidence 567899999998544 99999999999999998888776644333 112222222 2223333333
Q ss_pred ceeeeecCCCceEEEcCCCc---eeecccceEEEecCCCCEeEEE-EeC-----------------CC----eEEEEeCC
Q 011126 354 KTKSLRKSSDLTCVVLPPKV---FRLLEKPLHEFQGHSSEVLDLS-WSK-----------------NG----FLLSSSAD 408 (493)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~-~sp-----------------~g----~l~sgs~D 408 (493)
....+.++..+.++.+..-. .............+.++|..|. ++. .| -++....+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 44444555555555543310 0111111222234556665554 221 11 23444457
Q ss_pred CeEEEEECCCCcEEEEec-CCCcEEEEEEcc----CCCCEEEEEeCCCeEEEEeCCCCeEEEecCC-----CCCeEEEEE
Q 011126 409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP----VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-----REIVSAVCY 478 (493)
Q Consensus 409 g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp----~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~-----~~~I~sv~~ 478 (493)
..+||+...+.+..+... ..-.+..+.+-+ ..+..|++-..+|.|+++.+..-+.+..... ...+...++
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 889999998777655443 222333444521 1566788889999999999998776632222 123556778
Q ss_pred ccCCCEEEEee
Q 011126 479 CPDGKVRQNSA 489 (493)
Q Consensus 479 spdG~~l~s~s 489 (493)
+++|..++-.+
T Consensus 315 s~~Gdi~~~~g 325 (395)
T PF08596_consen 315 SRNGDIFYWTG 325 (395)
T ss_dssp -TTS-EEEE-S
T ss_pred CCCCCEEEEeC
Confidence 99999876544
No 308
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.79 E-value=0.0038 Score=64.27 Aligned_cols=101 Identities=16% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCEeEEEEeCCC--eEEEE----eCCCe----EEEEECCCCcE----EEEecCCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126 389 SEVLDLSWSKNG--FLLSS----SADKT----VRLWQVGIDRC----LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (493)
Q Consensus 389 ~~V~~l~~sp~g--~l~sg----s~Dg~----V~lWd~~~~~~----~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (493)
....++.|+... .+.|. +.+|. -.+|++...+. +..+.....|.|++++| +...|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 344667777643 34332 33443 34566654432 22334888999999999 999999999999999
Q ss_pred EEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 455 IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+||...+.. ......-.++.++|+|+|.++++++..
T Consensus 285 LyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 285 LYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred EEEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCC
Confidence 999976633 344556678999999999999998864
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.0011 Score=69.80 Aligned_cols=206 Identities=12% Similarity=0.098 Sum_probs=123.0
Q ss_pred CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc---CC-CEEEEEECCCcEEEEecCCCeeeeee
Q 011126 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DG-QYLASGGEDGTVRVWKVIEHERLDGF 322 (493)
Q Consensus 247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg-~~Lasgs~Dg~V~iWdl~~~~~~~~~ 322 (493)
.-+||++...|+|.+||....... ..++.|.++|..++|-+ +. ..|+.-..-.+|.+|+..+|+....+
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~-------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVI-------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhh-------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence 346788888999999998754432 24677899999999987 33 35666666779999999999998888
Q ss_pred eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc--eEEEcCCCceeecc--cceEEEecCCC---------
Q 011126 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL--TCVVLPPKVFRLLE--KPLHEFQGHSS--------- 389 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~--~~~~~~~~h~~--------- 389 (493)
........|+.+.+.....+......+.-...........++ ..+.+...--.+.. ....+-..++.
T Consensus 152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit 231 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT 231 (1062)
T ss_pred ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence 777776666666666555544443322111111000011111 11111000000000 00000000111
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCC--CEEEEEeCCCeEEEEeCCC
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD--NYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~--~~l~sgs~Dg~V~IWdl~~ 460 (493)
....++|+|.- .++-......+.|+|++-..++.+.. ..+.+.-+.|-| ++ ..|.++..||.+.||-.+.
T Consensus 232 y~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 232 YCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEeec
Confidence 01245678864 33334456779999999999998887 456666677777 54 4788999999999997654
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.69 E-value=0.0079 Score=58.11 Aligned_cols=196 Identities=14% Similarity=0.165 Sum_probs=103.6
Q ss_pred ceeccCCCeEEee-----ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-----------
Q 011126 241 ATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----------- 304 (493)
Q Consensus 241 ~~fsp~g~~lasg-----s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------- 304 (493)
..|+++|++|.+. ...|.|-|||...... ...++..|.-.-..|.+.|||+.|+.+--
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~------ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~ 129 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR------RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRA 129 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE------EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCce
Confidence 6899999999884 4468999999873322 23355556555667899999988877521
Q ss_pred -------CCcEEEEecCCCeeeeeeeccC--CCCceEEEeeCCCCceeee-eccCccccceeeeecCCCceEEEcCCCc-
Q 011126 305 -------DGTVRVWKVIEHERLDGFDVQD--TDPSCLYFTINHLSQLIPI-DVDKEKIDKTKSLRKSSDLTCVVLPPKV- 373 (493)
Q Consensus 305 -------Dg~V~iWdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~- 373 (493)
+-.+..-|..+++.+.....+. ...+.-.+.......+... .+....... ...+..+....
T Consensus 130 kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~--------~PLva~~~~g~~ 201 (305)
T PF07433_consen 130 KLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA--------PPLVALHRRGGA 201 (305)
T ss_pred ecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc--------CCeEEEEcCCCc
Confidence 1223334445555544433311 1111111222222222211 111110000 00111111110
Q ss_pred eeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC
Q 011126 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451 (493)
Q Consensus 374 ~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg 451 (493)
+....-+......-.+.|-+|++++++ ..+|+=.-+.+.+||..+++.+...... .+..++-.+ ++ ++++.+ .|
T Consensus 202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~-~~-f~~ssG-~G 277 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTD-DG-FLVSSG-QG 277 (305)
T ss_pred ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecC-Cc-eEEeCC-Cc
Confidence 000001111112235678899999998 4566668899999999999998877543 355666665 44 555544 44
Q ss_pred eEE
Q 011126 452 KVR 454 (493)
Q Consensus 452 ~V~ 454 (493)
.+.
T Consensus 278 ~~~ 280 (305)
T PF07433_consen 278 QLI 280 (305)
T ss_pred cEE
Confidence 433
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00045 Score=69.91 Aligned_cols=133 Identities=19% Similarity=0.364 Sum_probs=95.2
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceE
Q 011126 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (493)
Q Consensus 287 I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 366 (493)
=+-+.|||-|.||+|--.-| |.+|--.+...++.+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-------------------------------------------- 247 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-------------------------------------------- 247 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--------------------------------------------
Confidence 35689999999999988776 888954333222211
Q ss_pred EEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEe-----------CCCeEEEEECCCCcEEEEecC--CC-c-
Q 011126 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-----------ADKTVRLWQVGIDRCLRVFSH--NN-Y- 430 (493)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs-----------~Dg~V~lWd~~~~~~~~~~~h--~~-~- 430 (493)
.|. .|.-+.|||+. ||+|-+ ....++|||+.+|...+.|.. .. .
T Consensus 248 -------------------~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~ 307 (698)
T KOG2314|consen 248 -------------------YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLK 307 (698)
T ss_pred -------------------cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccc
Confidence 132 36677888887 777754 236799999999999988863 22 1
Q ss_pred EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-CCCCeEEEEEccCCCEEE
Q 011126 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~-~~~~I~sv~~spdG~~l~ 486 (493)
-.-+.|+. |+.|+|-...| .|.||+...-.++.... -...|....|+|.+..||
T Consensus 308 WP~frWS~-DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 308 WPIFRWSH-DDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred cceEEecc-CCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 22468898 99999987775 59999998866664332 235688899999998887
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.63 E-value=0.00036 Score=74.46 Aligned_cols=150 Identities=20% Similarity=0.222 Sum_probs=95.8
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC---------CCcEEEE
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRVW 311 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---------Dg~V~iW 311 (493)
.-+..+++++.+|...|+|.+.|.. .+...+++.+|++.|.++.. .|+.|++||. |..|+||
T Consensus 181 ~imR~Nnr~lf~G~t~G~V~LrD~~-------s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 181 TIMRYNNRNLFCGDTRGTVFLRDPN-------SFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred EEEEecCcEEEeecccceEEeecCC-------cCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhh
Confidence 3456678999999999999999976 44566789999999987766 5889999986 5568999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
|++..+.+.-+..+..+ ..+.|.+.-...+ +..+..+.+-..+...+.-..--+..+......+
T Consensus 252 DLRmmral~PI~~~~~P-~flrf~Psl~t~~---------------~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i 315 (1118)
T KOG1275|consen 252 DLRMMRALSPIQFPYGP-QFLRFHPSLTTRL---------------AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGI 315 (1118)
T ss_pred hhhhhhccCCcccccCc-hhhhhcccccceE---------------EEEecccceeeccccccCCCccceeEEccCCCcc
Confidence 99887766555544332 1122222111111 1112222222222111111001122233345569
Q ss_pred eEEEEeCCC-eEEEEeCCCeEEEEE
Q 011126 392 LDLSWSKNG-FLLSSSADKTVRLWQ 415 (493)
Q Consensus 392 ~~l~~sp~g-~l~sgs~Dg~V~lWd 415 (493)
..+.+++++ .++.|..+|.|.+|-
T Consensus 316 ~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 316 SAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeEEecCCCceEEEecccCcEeeec
Confidence 999999999 999999999999997
No 313
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.60 E-value=0.019 Score=58.42 Aligned_cols=88 Identities=13% Similarity=0.031 Sum_probs=57.0
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEec-CC-CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe-cCCCCCeEEE
Q 011126 400 GFLLSSSADKTVRLWQVGIDRCLRVFS-HN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIREIVSAV 476 (493)
Q Consensus 400 g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~-~~~~~~I~sv 476 (493)
+.++.++.++.|..+|..+++.+.... .. ....+... .+.+|++++.+|.|+++|..+++++.. ..+...+.+-
T Consensus 280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~s 356 (377)
T TIGR03300 280 NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASP 356 (377)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccC
Confidence 377778899999999999998776553 11 12222222 456889999999999999999998853 3333333333
Q ss_pred EEccCCCEEEEeecC
Q 011126 477 CYCPDGKVRQNSACN 491 (493)
Q Consensus 477 ~~spdG~~l~s~s~d 491 (493)
-.-.+++ |++++.|
T Consensus 357 p~~~~~~-l~v~~~d 370 (377)
T TIGR03300 357 PVVVGDG-LLVQTRD 370 (377)
T ss_pred CEEECCE-EEEEeCC
Confidence 2233444 4455444
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=7e-05 Score=79.31 Aligned_cols=236 Identities=14% Similarity=0.186 Sum_probs=138.1
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC--cEEE
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRV 310 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~V~i 310 (493)
.+...-++++|+-+.++|++|+..|.|+++++..+..+-+ ..+|..+|+-+.-+.+|..+++.+.-. -..+
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------ccccccccccccccCCcceeeeeccccCchHHH
Confidence 3444556799999999999999999999999987765443 578999999999999999776655433 4678
Q ss_pred EecCC-CeeeeeeeccCCCCceEEEeeCCC--------CceeeeeccCccc------------cceeeeecCCCceEEEc
Q 011126 311 WKVIE-HERLDGFDVQDTDPSCLYFTINHL--------SQLIPIDVDKEKI------------DKTKSLRKSSDLTCVVL 369 (493)
Q Consensus 311 Wdl~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~~~ 369 (493)
|++.+ +.....+.. -.++.|+.... .....++...... +......-+..-.+++|
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 99854 233333322 12222222111 1111222211111 11122333444455555
Q ss_pred CCCceeecc-cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE
Q 011126 370 PPKVFRLLE-KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 370 ~~~~~~~~~-~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg 447 (493)
+--.|+... ..++.|..-+.. ..=.|+|+| .++.-+. |||+++.+.++....-+ -..|.|+. .|+.++..
T Consensus 1248 dGvLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld-qc~VtFNs-tG~VmYa~ 1319 (1516)
T KOG1832|consen 1248 DGVLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD-QCAVTFNS-TGDVMYAM 1319 (1516)
T ss_pred CceeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc-ceEEEecc-Cccchhhh
Confidence 555554432 234444333321 123589998 6666554 99999988777654222 24577777 66655443
Q ss_pred eC------C-----------CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126 448 SI------D-----------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 448 s~------D-----------g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s 487 (493)
-. | ...|-+|..+...+........|..+|-.|...++.+
T Consensus 1320 ~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1320 LNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred hhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEE
Confidence 20 0 1244555555555555566667888888888777754
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.58 E-value=0.012 Score=56.04 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=68.0
Q ss_pred EeEEEEe-CCCeEEEEeCCCeEEEEECCCCcEEEEec------CCCcEEEEEEccCCCCEEEEEeCC--------CeEEE
Q 011126 391 VLDLSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSID--------GKVRI 455 (493)
Q Consensus 391 V~~l~~s-p~g~l~sgs~Dg~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~D--------g~V~I 455 (493)
...+++. +++.|+.+...+ +.++|..+++...... .....+.+++.| +|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5677777 667666666655 4555998886554443 346788999999 99988877654 66888
Q ss_pred EeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 456 WEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 456 Wdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
++.. +++......-...+.|+|+|||+.|+++..
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeeccc
Confidence 8888 665554444567899999999998876543
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00031 Score=68.49 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=72.4
Q ss_pred eEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
..-+.+|...|.+|+|+|.+ ++..++.+.+|+|.|+++..++..+.....+++++|.-.+.++|..|-..|.|.|||+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 34466788999999999976 8999999999999999999999998866999999999867778889999999999999
Q ss_pred CCCe
Q 011126 459 RRCQ 462 (493)
Q Consensus 459 ~~~~ 462 (493)
+..+
T Consensus 266 R~~~ 269 (463)
T KOG1645|consen 266 RQPE 269 (463)
T ss_pred cCCC
Confidence 8653
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.42 E-value=0.0067 Score=67.09 Aligned_cols=228 Identities=12% Similarity=0.162 Sum_probs=128.5
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
+.+.++.|..++..++.+...|.|.+-|......++. ..-...|.+++|+||++.++.....+++.+-. .+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--------GNVDNGISAASWSPDEELLALITGRQTLLFMT-KD 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee--------eeccCceEEEeecCCCcEEEEEeCCcEEEEEe-cc
Confidence 5666788999999999999999999997665443322 22467899999999999998888877776543 22
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
...+........ ....+....+++.... ..+.++...... +.....++......-| ..=+.|+
T Consensus 140 f~~i~E~~L~~d--------~~~~sk~v~VGwGrke----Tqfrgs~gr~~~----~~~~~~ek~~~~~~~~-~~~~~Is 202 (1265)
T KOG1920|consen 140 FEPIAEKPLDAD--------DERKSKFVNVGWGRKE----TQFRGSEGRQAA----RQKIEKEKALEQIEQD-DHKTSIS 202 (1265)
T ss_pred ccchhccccccc--------cccccccceecccccc----eeeecchhhhcc----cccccccccccchhhc-cCCceEE
Confidence 222221111000 0000111111111110 001111000000 0000000101111112 2234689
Q ss_pred EeCCC-eEEEEe----CC-CeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEe---CCCeEEEEeCCCCe---
Q 011126 396 WSKNG-FLLSSS----AD-KTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQ--- 462 (493)
Q Consensus 396 ~sp~g-~l~sgs----~D-g~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~IWdl~~~~--- 462 (493)
|--+| ++++.. .+ +.|+|||-. +..-.+- ....--.+++|-| .|.++++-. .|+.|.++.-+.-+
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~ 280 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGE 280 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccc
Confidence 99999 777632 33 899999976 3222111 1334446899999 899888753 45679999866432
Q ss_pred EE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 463 VV-DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 463 ~~-~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
.. .+......|..++|+.++..|++-.+.
T Consensus 281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred cccCCcccccchheeeecCCCCceeeeecc
Confidence 22 233334449999999999999885543
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.40 E-value=4.2e-05 Score=78.49 Aligned_cols=178 Identities=17% Similarity=0.358 Sum_probs=116.7
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEE----CCCcEEEEecCCCeeee
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG----EDGTVRVWKVIEHERLD 320 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs----~Dg~V~iWdl~~~~~~~ 320 (493)
+...+++|..+|.|-+-.++..... ......+|...+++++|++ |...||.|- .|..+.|||+.++-.
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt-- 141 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT-- 141 (783)
T ss_pred chhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC--
Confidence 3467889999999999887754322 1223467888999999998 666777763 356799999876521
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 400 (493)
.+.. ...| . .+-......++|-.+.
T Consensus 142 ---vPke---~~~f-----------------------------------------------s--~~~l~gqns~cwlrd~ 166 (783)
T KOG1008|consen 142 ---VPKE---SPLF-----------------------------------------------S--SSTLDGQNSVCWLRDT 166 (783)
T ss_pred ---CCcc---cccc-----------------------------------------------c--cccccCccccccccCc
Confidence 0000 0000 0 0012233478888666
Q ss_pred -eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC-CCCe-EEE-----ecCCCCC
Q 011126 401 -FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQ-VVD-----YTDIREI 472 (493)
Q Consensus 401 -~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl-~~~~-~~~-----~~~~~~~ 472 (493)
++++|...+.++++|++........-.+..+..+...|..++|+++-. ||.|.+||. ++-+ ++. .......
T Consensus 167 klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~ 245 (783)
T KOG1008|consen 167 KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQ 245 (783)
T ss_pred chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccc
Confidence 888888888999999984333222225567888899998889998876 999999994 3322 111 1222345
Q ss_pred eEEEEEccCCCEEE
Q 011126 473 VSAVCYCPDGKVRQ 486 (493)
Q Consensus 473 I~sv~~spdG~~l~ 486 (493)
+..++|.|....++
T Consensus 246 l~~~aycPtrtgll 259 (783)
T KOG1008|consen 246 LFALAYCPTRTGLL 259 (783)
T ss_pred eeeEEeccCCcchh
Confidence 99999999765543
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.002 Score=68.36 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=59.0
Q ss_pred ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
.+++|||..-.|+.|...|.+.||........ + ....|+.+|..+.||++|..|+++..-|.|.+|....
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h--t-----v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH--T-----VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCCceee--e-----eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 34899999999999999999999987644321 1 2245999999999999999999999999999998763
No 320
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.37 E-value=0.0004 Score=43.63 Aligned_cols=35 Identities=40% Similarity=0.904 Sum_probs=31.7
Q ss_pred eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
..+.+|...|+++.|.+++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34667999999999999999999999999999996
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.30 E-value=0.0078 Score=62.12 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=22.0
Q ss_pred eeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
.+....-....|.++|+|++++.++ ||...|+..
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~ 60 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTA 60 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEET
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEc
Confidence 3444455678999999999998854 677777763
No 322
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0014 Score=67.60 Aligned_cols=91 Identities=14% Similarity=0.269 Sum_probs=76.5
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEE-EEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~-~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
...|.-+.|+|.- ++|++..+|.|.++.+. .+.+.++. |+..++ +++|.| ||++||.|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3467788999987 99999999999999998 67777777 777777 999999 9999999999999999999998776
Q ss_pred Ee--cCCCCCeEEEEEcc
Q 011126 465 DY--TDIREIVSAVCYCP 480 (493)
Q Consensus 465 ~~--~~~~~~I~sv~~sp 480 (493)
.- ......|+.+-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 43 44556677777763
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.003 Score=66.02 Aligned_cols=116 Identities=21% Similarity=0.210 Sum_probs=85.9
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
-+++..+++++.|+.-|.+.+|+...+..... ...+-.+.+..+..+++..++|.|+..|.|.|+.+.....
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-- 110 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-- 110 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcc------cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC--
Confidence 45778899999999999999999875543221 1223456677788899998999999999999998865321
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 400 (493)
...+++++. -..|...|++++|++++
T Consensus 111 --------~~~~~~t~~----------------------------------------------d~~~~~rVTal~Ws~~~ 136 (726)
T KOG3621|consen 111 --------RDLDYVTPC----------------------------------------------DKSHKCRVTALEWSKNG 136 (726)
T ss_pred --------Ccceeeccc----------------------------------------------cccCCceEEEEEecccc
Confidence 111111110 02288999999999999
Q ss_pred -eEEEEeCCCeEEEEECCC
Q 011126 401 -FLLSSSADKTVRLWQVGI 418 (493)
Q Consensus 401 -~l~sgs~Dg~V~lWd~~~ 418 (493)
.+++|..-|+|.+-.+.+
T Consensus 137 ~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 137 MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cEEeecCCCceEEEEEech
Confidence 999999999999988876
No 324
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.18 E-value=0.0012 Score=41.26 Aligned_cols=36 Identities=44% Similarity=0.862 Sum_probs=30.9
Q ss_pred EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126 421 CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (493)
Q Consensus 421 ~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd 457 (493)
++..+. |...|+++.|+| .+.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 444444 788999999999 889999999999999996
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.13 E-value=0.038 Score=58.41 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=72.9
Q ss_pred CCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcE------------EEEecCCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC------------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGK 452 (493)
Q Consensus 387 h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~------------~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (493)
-......++++|+| .++++..+.+|.|.|+.+.+. .....-.......+|.+ +|+.+.|--.|..
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecce
Confidence 34556789999999 556667799999999987542 34444445556789999 8899999999999
Q ss_pred EEEEeCCC----------CeEEEecCCCCCeEEEE------EccCCCEEEEee
Q 011126 453 VRIWEVRR----------CQVVDYTDIREIVSAVC------YCPDGKVRQNSA 489 (493)
Q Consensus 453 V~IWdl~~----------~~~~~~~~~~~~I~sv~------~spdG~~l~s~s 489 (493)
|..||+.+ ..++...+....+-.+. -.|||++|++..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 99999986 34554333333333333 379999998764
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0051 Score=61.04 Aligned_cols=164 Identities=18% Similarity=0.252 Sum_probs=111.6
Q ss_pred eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceE
Q 011126 253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL 332 (493)
Q Consensus 253 gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~ 332 (493)
.-.++.|.|+|-.....+... .-.-|..+|.++.++|-+..+++....|.|.-|.... .++.+.. .+
T Consensus 118 ~~~sg~i~VvD~~~d~~q~~~-----fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-----~~qfPr~---~l 184 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDFCQDGY-----FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-----PFQFPRT---NL 184 (558)
T ss_pred cccCCCcEEECCcCCcCccce-----ecccccCceEEEEeeccccceeeccccceeEeecCCC-----cccCccc---cc
Confidence 346788999987654433221 1245999999999999999999999999999998753 1111110 01
Q ss_pred EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeE
Q 011126 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTV 411 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V 411 (493)
.|...+ +.-+..+........++.|+|++ .+.+-+.|..|
T Consensus 185 ~~~~K~---------------------------------------eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV 225 (558)
T KOG0882|consen 185 NFELKH---------------------------------------ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV 225 (558)
T ss_pred cccccc---------------------------------------cchhhcccccccCccceEEccccCcccccCcccEE
Confidence 111110 01122233345677899999999 89888999999
Q ss_pred EEEECCCCcEEEEec---------------------------------CC-CcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126 412 RLWQVGIDRCLRVFS---------------------------------HN-NYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (493)
Q Consensus 412 ~lWd~~~~~~~~~~~---------------------------------h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd 457 (493)
+++++++++.++.+. |. ..-+.+.|.. .+++|+-|+.=| |+|.+
T Consensus 226 R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin 303 (558)
T KOG0882|consen 226 RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVIN 303 (558)
T ss_pred EEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEE
Confidence 999999887654432 11 1235678887 899999988777 99999
Q ss_pred CCCCeEEEecCCC
Q 011126 458 VRRCQVVDYTDIR 470 (493)
Q Consensus 458 l~~~~~~~~~~~~ 470 (493)
+.++.++...+-.
T Consensus 304 ~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 304 LDTNTVVRILGKD 316 (558)
T ss_pred eecCeEEEEeccc
Confidence 9999887654433
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.10 E-value=0.053 Score=44.15 Aligned_cols=66 Identities=27% Similarity=0.337 Sum_probs=46.2
Q ss_pred CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCC---CEEEEEeCCCeEEE
Q 011126 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD---NYFISGSIDGKVRI 455 (493)
Q Consensus 388 ~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~---~~l~sgs~Dg~V~I 455 (493)
...|+.|+-...+.++.+-.+|+|-+|+-. ..+...+....++++++...++ .-|++|-.+|+|-+
T Consensus 42 ~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 42 TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 456777777777789999999999999752 2333334455588888765232 26889988998753
No 328
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.06 E-value=0.36 Score=48.96 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=46.6
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 400 g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
+.++.++.++.+..||..+++.+........ ..... .+..++.++.||.|+.+|..+++.+.
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W 303 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVVALDRRSGSELW 303 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEEEEECCCCcEEE
Confidence 4777788899999999999987766653221 12222 45678888899999999999998763
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.03 E-value=0.011 Score=61.11 Aligned_cols=160 Identities=15% Similarity=0.148 Sum_probs=87.7
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
...+.++|+|+++++ ..+|.-.|+...... ....+.-....|.+.+ .+|+-....+|.|+.--+..
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r------------~k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWR------------NKAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTE------------EEEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCc------------ccccCceeEEEEecCc-cEEEEECCCeEEEEEcCccc
Confidence 455899999999999 577888888732111 0123445568898855 46666668889996321111
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (493)
....+.. ...+..|-.
T Consensus 101 ~~k~i~~---------------------------------------------------------------~~~~~~If~- 116 (443)
T PF04053_consen 101 VVKSIKL---------------------------------------------------------------PFSVEKIFG- 116 (443)
T ss_dssp TT--------------------------------------------------------------------SS-EEEEE--
T ss_pred cceEEcC---------------------------------------------------------------CcccceEEc-
Confidence 1001100 011222211
Q ss_pred CCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC------------eEE
Q 011126 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC------------QVV 464 (493)
Q Consensus 398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~------------~~~ 464 (493)
| +|+..+ ++.|.+||+.+++.++.+.... |..|.|++ ++++++..+.+ .+.|++.... ...
T Consensus 117 --G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~ 190 (443)
T PF04053_consen 117 --GNLLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE 190 (443)
T ss_dssp --SSSEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred --CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceE
Confidence 6 444444 4489999999999999998664 89999999 89999888755 6888876644 333
Q ss_pred EecCCCCCeEEEEEccC
Q 011126 465 DYTDIREIVSAVCYCPD 481 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spd 481 (493)
........|.+.+|.-|
T Consensus 191 ~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 191 LIHEISERIKSGCWVED 207 (443)
T ss_dssp EEEEE-S--SEEEEETT
T ss_pred EEEEecceeEEEEEEcC
Confidence 34444567777888766
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.03 E-value=0.03 Score=62.17 Aligned_cols=209 Identities=15% Similarity=0.187 Sum_probs=109.6
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCC----cccc----------cccccc--ceeeecc--------------
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK----QSRE----------LSSLYT--GQEFLAH-------------- 283 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~----~~~~----------~~~~~~--~~~l~~H-------------- 283 (493)
..+.|.+++|+||+..++..+..+++.+-...= .+.. ..-.+. ...|.|.
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 346677799999999999999888887754310 0000 000000 0011111
Q ss_pred -------cCCEEEEEEccCCCEEEEEE----CC-CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcc
Q 011126 284 -------EGSILTMKFSLDGQYLASGG----ED-GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK 351 (493)
Q Consensus 284 -------~~~I~~l~fspdg~~Lasgs----~D-g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (493)
.+.=+.|.|--||+++|+.. .+ ..|+|||-. +..-..-........++.|.|.+. .+..+
T Consensus 188 ~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~i------ 259 (1265)
T KOG1920|consen 188 ALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAI------ 259 (1265)
T ss_pred cccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeee------
Confidence 11123589999999998832 23 789999965 332222222222334455555221 11111
Q ss_pred ccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE---EeCCCeEEEEECCCCcEEE--Ee
Q 011126 352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS---SSADKTVRLWQVGIDRCLR--VF 425 (493)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s---gs~Dg~V~lWd~~~~~~~~--~~ 425 (493)
-...++..++++......-. .....+......|..|+|+.++ .|+. ......|++|-+.+..-.. .+
T Consensus 260 ------q~~~sd~~IvffErNGL~hg-~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l 332 (1265)
T KOG1920|consen 260 ------QCKTSDSDIVFFERNGLRHG-EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQEL 332 (1265)
T ss_pred ------eecCCCCcEEEEecCCcccc-ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEE
Confidence 11222334444443322111 0111122233448999999998 6665 4455559999988754322 22
Q ss_pred cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 426 ~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
....... +.|+|.....|..-..+|.+.++++
T Consensus 333 ~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 333 QFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ecccccc-ccccCCCceeEEEEecCCcEEEEEE
Confidence 2222222 8888866666666556776666554
No 331
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0032 Score=65.08 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=74.3
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (493)
Q Consensus 285 ~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 364 (493)
..|.-+.|+|.-.+||++..+|.|-+..+. .+.+.++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti------------------------------------------ 57 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI------------------------------------------ 57 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec------------------------------------------
Confidence 458889999999999999999999999875 4433322
Q ss_pred eEEEcCCCceeecccceEEEecCCCCEe-EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEE--ecCCCcEEEEEEcc
Q 011126 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVL-DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV--FSHNNYVTSVAFNP 438 (493)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~--~~h~~~V~~v~fsp 438 (493)
.-|...++ +++|.|+| .|+.|-.||+|++.|+.++..+.. +.....|.++.|.|
T Consensus 58 --------------------p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 58 --------------------PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred --------------------cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 22344455 99999999 999999999999999999998888 55778899999975
No 332
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.03 E-value=0.17 Score=50.99 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=59.4
Q ss_pred EEEEe-CCC--eEEEEeCCCeEEEE--ECCCCcEEEEec-CCCcEEE-EEEccCCCCEEEEEeCC----CeEEEEeCC-C
Q 011126 393 DLSWS-KNG--FLLSSSADKTVRLW--QVGIDRCLRVFS-HNNYVTS-VAFNPVDDNYFISGSID----GKVRIWEVR-R 460 (493)
Q Consensus 393 ~l~~s-p~g--~l~sgs~Dg~V~lW--d~~~~~~~~~~~-h~~~V~~-v~fsp~d~~~l~sgs~D----g~V~IWdl~-~ 460 (493)
.+.|. +++ +|.....||.-+|| +...+.. +.+. ..-.|+. +.|++..+.++.++..+ ..|+.-++. .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 55554 655 66666688776655 4444443 3443 4445644 67788334444566553 367777888 7
Q ss_pred CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 461 CQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+.+..+......-..+.|+|+|++++...+
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 777776655544479999999999886654
No 333
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.01 E-value=0.058 Score=43.91 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=65.0
Q ss_pred EeEEEEeC---CC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 391 VLDLSWSK---NG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 391 V~~l~~sp---~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
|++|++.. +| .|+.|+.|..||+|+- ...+..+.-.+.|++++-.. +..|+.+-.+|+|-+|+-..... .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~RlW-R 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQRLW-R 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcceee-e
Confidence 55666554 44 8999999999999984 47788888888899998876 47799999999999997633222 2
Q ss_pred ecCCCCCeEEEEE-ccCC--C-EEEEeec
Q 011126 466 YTDIREIVSAVCY-CPDG--K-VRQNSAC 490 (493)
Q Consensus 466 ~~~~~~~I~sv~~-spdG--~-~l~s~s~ 490 (493)
.+.+..++++++ ..+| . -|++|-+
T Consensus 77 -iKSK~~~~~~~~~D~~gdG~~eLI~Gws 104 (111)
T PF14783_consen 77 -IKSKNQVTSMAFYDINGDGVPELIVGWS 104 (111)
T ss_pred -eccCCCeEEEEEEcCCCCCceEEEEEec
Confidence 223334566654 3333 2 4555543
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.0058 Score=63.97 Aligned_cols=135 Identities=19% Similarity=0.190 Sum_probs=96.0
Q ss_pred ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (493)
Q Consensus 283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 362 (493)
|...|.--+++..+++|+.|+.-|.|++|+-..+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~------------------------------------------ 69 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK------------------------------------------ 69 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc------------------------------------------
Confidence 44556666777789999999999999999865443211
Q ss_pred CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--EEe-----cCCCcEEEE
Q 011126 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVF-----SHNNYVTSV 434 (493)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--~~~-----~h~~~V~~v 434 (493)
....+..+.+..+..+++. ++|.|+..|.|.++.+....+- ..+ .|...|+|+
T Consensus 70 -------------------~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal 130 (726)
T KOG3621|consen 70 -------------------LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTAL 130 (726)
T ss_pred -------------------ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEE
Confidence 1112234456667778877 8888889999999988754321 111 278999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEeCCCCe-----EEEecCCCCCeEEEEEc
Q 011126 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQ-----VVDYTDIREIVSAVCYC 479 (493)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~IWdl~~~~-----~~~~~~~~~~I~sv~~s 479 (493)
+|++ ++..|.+|...|+|..-.+.... ...+......|-.+.+.
T Consensus 131 ~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 131 EWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred Eecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9999 99999999999999999888732 22344455667666554
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.95 E-value=0.13 Score=48.11 Aligned_cols=166 Identities=13% Similarity=0.105 Sum_probs=89.7
Q ss_pred CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
++.++++++.++.|..||..+|+.+..+.......... ... ...++. ...++.+..++....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~--~~~v~v---------------~~~~~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVD--GGRVYV---------------GTSDGSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEE--TTEEEE---------------EETTSEEEEEETTTS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eec--cccccc---------------ccceeeeEecccCCc
Confidence 56678888999999999999999888777633211111 100 011111 112223333332221
Q ss_pred eecccceEEE-ecC----C-CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCC-c----------E-EEEEE
Q 011126 375 RLLEKPLHEF-QGH----S-SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN-Y----------V-TSVAF 436 (493)
Q Consensus 375 ~~~~~~~~~~-~~h----~-~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~-~----------V-~~v~f 436 (493)
.. +... ... . .......+. ++.++.+..++.|..+|+++++.+....-.. . + ..+.+
T Consensus 97 ~~----~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (238)
T PF13360_consen 97 KV----LWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI 171 (238)
T ss_dssp CE----EEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC
T ss_pred ce----eeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE
Confidence 11 2221 111 1 111222232 3378888889999999999999987775211 1 1 23333
Q ss_pred ccCCCCEEEEEeCCCe-EEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 437 NPVDDNYFISGSIDGK-VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 437 sp~d~~~l~sgs~Dg~-V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
. ++ .+..++.++. +.+ |+.+++.+ |......+..+ ..+++..|++++
T Consensus 172 ~--~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~~-~~~~~~~l~~~~ 219 (238)
T PF13360_consen 172 S--DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYSL-PSVDGGTLYVTS 219 (238)
T ss_dssp C--TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECEC-EECCCTEEEEEE
T ss_pred E--CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccCC-ceeeCCEEEEEe
Confidence 2 34 6777777775 555 99999977 33223333332 446666666665
No 336
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.94 E-value=0.23 Score=46.45 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=91.0
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
.+..++++..++.|..+|..+....-...... ..... ....+....++..++.+..++.|..+|+.+|+.+......
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS--SPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-S--SCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred cccccccccceeeeEecccCCcceeeeecccc--ccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 44456666677888888876655322200000 00001 1122233334788888888999999999999987776553
Q ss_pred CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEE
Q 011126 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS 405 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sg 405 (493)
....... +. ....+..-....++.++.+
T Consensus 152 ~~~~~~~------------------------------------------------~~----~~~~~~~~~~~~~~~v~~~ 179 (238)
T PF13360_consen 152 EPRGSSP------------------------------------------------IS----SFSDINGSPVISDGRVYVS 179 (238)
T ss_dssp TT-SS--------------------------------------------------EE----EETTEEEEEECCTTEEEEE
T ss_pred CCCCCcc------------------------------------------------ee----eecccccceEEECCEEEEE
Confidence 2210000 00 0011111111223466666
Q ss_pred eCCCe-EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 406 SADKT-VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 406 s~Dg~-V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
+.++. +.+ |+.+++.+.... ...+..+ ..+ .+..|+.++.++.|..||+++++.+.
T Consensus 180 ~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~-~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 180 SGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSV-DGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EEC-CCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred cCCCeEEEE-ECCCCCEEEEec-CCCccCC-cee-eCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 66664 556 999998664333 2333331 234 67788888899999999999998863
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.93 E-value=0.052 Score=57.46 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=66.1
Q ss_pred EeCCC-eE-EEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-------------------------
Q 011126 396 WSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS------------------------- 448 (493)
Q Consensus 396 ~sp~g-~l-~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs------------------------- 448 (493)
+.|+| .+ .+.-..+.+.+.|..+.+...++.-......++++| ++.++.+.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 44555 22 233445677788888777766665444555677777 677666554
Q ss_pred ---------------CCCeEEEEeCCC-----CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 449 ---------------IDGKVRIWEVRR-----CQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 449 ---------------~Dg~V~IWdl~~-----~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.+++|.+.|..+ .+++.+.........+.++|||+++++++.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC
Confidence 235688888887 466777778888999999999999998864
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.87 E-value=0.44 Score=49.02 Aligned_cols=81 Identities=10% Similarity=0.150 Sum_probs=50.0
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCCeEEEEE
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCY 478 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~I~sv~~ 478 (493)
..+....++.+.+-+-..... +...+++..|++|| +++++|.-..+|++.|....-.+.+.. .+.......+.|
T Consensus 192 ~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~W 267 (410)
T PF04841_consen 192 VEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAW 267 (410)
T ss_pred eEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEE
Confidence 444444455566433222111 33346899999999 999999999999999998765544422 222345566677
Q ss_pred ccCCCEE
Q 011126 479 CPDGKVR 485 (493)
Q Consensus 479 spdG~~l 485 (493)
.-+...+
T Consensus 268 CG~dav~ 274 (410)
T PF04841_consen 268 CGNDAVV 274 (410)
T ss_pred ECCCcEE
Confidence 6654433
No 339
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.13 Score=48.81 Aligned_cols=220 Identities=17% Similarity=0.248 Sum_probs=122.1
Q ss_pred cceeccCCC-eEEeeecCCeE-EEEECCCcccccc-ccccceeeecccCCEEEEEEccCCCEEEEEECC-----CcEEEE
Q 011126 240 SATLKPGDH-ELTLGQRMRRV-RVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-----GTVRVW 311 (493)
Q Consensus 240 ~~~fsp~g~-~lasgs~dg~V-~vwd~~~~~~~~~-~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----g~V~iW 311 (493)
.++|+|.-. -++.+-+-|+. .++|......... .......|.+|. .|+|||.+|+..-.| |.|-||
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence 377887654 45556667764 6777765543221 122334567775 799999999875433 789999
Q ss_pred ecCCC-eeeeeeeccCCCCceEEEeeCCCCceeeee-ccCc-cccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 312 KVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPID-VDKE-KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 312 dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
|...+ +.+..+..+...+..+.+..++...+.... .... .......--.+....+++.+....++.+|....-..+.
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 98754 456667777777777777666644333221 0000 01111111122233344444333333333222222455
Q ss_pred CCEeEEEEeCCCeEEEEe-CCC-----eEEEEECCCCcEEEEec--------CCCcEEEEEEccCCCCEEE-EEeCCCeE
Q 011126 389 SEVLDLSWSKNGFLLSSS-ADK-----TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFI-SGSIDGKV 453 (493)
Q Consensus 389 ~~V~~l~~sp~g~l~sgs-~Dg-----~V~lWd~~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~-sgs~Dg~V 453 (493)
..|..++..++|.+..++ ..| --.|=....++.+..+. ..++|-+|+.+- +..+++ |.=..+..
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRA 304 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeE
Confidence 667788888888333332 111 11121223344444442 457899999998 445544 44455678
Q ss_pred EEEeCCCCeEEEe
Q 011126 454 RIWEVRRCQVVDY 466 (493)
Q Consensus 454 ~IWdl~~~~~~~~ 466 (493)
.|||..++.++..
T Consensus 305 vi~da~tG~vv~~ 317 (366)
T COG3490 305 VIWDAATGAVVSE 317 (366)
T ss_pred EEEEcCCCcEEec
Confidence 9999999998853
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.82 E-value=0.028 Score=61.42 Aligned_cols=150 Identities=9% Similarity=0.182 Sum_probs=94.4
Q ss_pred CCEEEEE-ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 296 GQYLASG-GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 296 g~~Lasg-s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
.++|+.- .....|+-.|+..|+.+..++.+...+ ...+.+.... .....-..+.+-.+..+..|++++-
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~---------aqlt~e~tflGls~n~lfriDpR~~ 562 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKF---------AQLTNEQTFLGLSDNSLFRIDPRLS 562 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccc---------cccCCCceEEEECCCceEEeccCCC
Confidence 3444433 355789999999999999998876543 2222222100 0011112344455556667777643
Q ss_pred e--ecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCC
Q 011126 375 R--LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG 451 (493)
Q Consensus 375 ~--~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg 451 (493)
. +.....+. ........|++-..+|+||.|+.+|.|||||--..+....+. .+.+|..|..+. ||++|++.+ +.
T Consensus 563 ~~k~v~~~~k~-Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc-~t 639 (794)
T PF08553_consen 563 GNKLVDSQSKQ-YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-DGKWILATC-KT 639 (794)
T ss_pred CCceeeccccc-cccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-CCcEEEEee-cc
Confidence 2 11111111 134557889999999999999999999999954333333343 689999999999 999988765 45
Q ss_pred eEEEEeC
Q 011126 452 KVRIWEV 458 (493)
Q Consensus 452 ~V~IWdl 458 (493)
.|.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 6777775
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.81 E-value=0.014 Score=62.36 Aligned_cols=106 Identities=20% Similarity=0.344 Sum_probs=78.8
Q ss_pred ceeccCCCeEEeee----cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 241 ATLKPGDHELTLGQ----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 241 ~~fsp~g~~lasgs----~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
..|||...++|+++ ..|.|.||--..... ..- ++.-| +++++|+|..-.|+.|=.-|.+.+|...+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPq-r~V-----t~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQ-RDV-----TYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCCC-ccc-----cccee---hhhhccChHHHHHhhccccceeEEEecCCc
Confidence 68999999999876 568899985432211 100 11223 456999999889999999999999986543
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
+. -.....|..+|..+.|
T Consensus 92 e~--------------------------------------------------------------htv~~th~a~i~~l~w 109 (1416)
T KOG3617|consen 92 ET--------------------------------------------------------------HTVVETHPAPIQGLDW 109 (1416)
T ss_pred ee--------------------------------------------------------------eeeccCCCCCceeEEe
Confidence 31 0112358999999999
Q ss_pred eCCC-eEEEEeCCCeEEEEECC
Q 011126 397 SKNG-FLLSSSADKTVRLWQVG 417 (493)
Q Consensus 397 sp~g-~l~sgs~Dg~V~lWd~~ 417 (493)
|++| .|+|+..-|.|.+|...
T Consensus 110 S~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 110 SHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCeEEEcCCCceeEEEEee
Confidence 9999 99999999999999765
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.80 E-value=0.051 Score=55.34 Aligned_cols=169 Identities=18% Similarity=0.208 Sum_probs=90.3
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee-eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (493)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 364 (493)
.|+.|.|.++..-|+.|...|.|.||.....+... .............+..+. ...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~ 59 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNN-----------------------SPG 59 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGG-----------------------SS-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccC-----------------------CCc
Confidence 58899999998899999999999999886543321 000000000000000000 000
Q ss_pred eEEEcCCC---ceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEE
Q 011126 365 TCVVLPPK---VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVT 432 (493)
Q Consensus 365 ~~~~~~~~---~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~---------h~~~V~ 432 (493)
.+.-...+ ..+.--.|...+....++|++++.|.-|+++.|..+|.+.|.|++....+..-. ...+|+
T Consensus 60 ~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt 139 (395)
T PF08596_consen 60 KLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT 139 (395)
T ss_dssp SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE
T ss_pred ceEEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee
Confidence 11100000 000011345556667899999999988899999999999999999887776632 345799
Q ss_pred EEEEcc----CCC---CEEEEEeCCCeEEEEeCC--C-Ce----EEEe-cCCCCCeEEEE
Q 011126 433 SVAFNP----VDD---NYFISGSIDGKVRIWEVR--R-CQ----VVDY-TDIREIVSAVC 477 (493)
Q Consensus 433 ~v~fsp----~d~---~~l~sgs~Dg~V~IWdl~--~-~~----~~~~-~~~~~~I~sv~ 477 (493)
++.|.. .|+ -.+++|...|.+.+|.+. . +. .... ..+.++|..|+
T Consensus 140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~ 199 (395)
T PF08596_consen 140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII 199 (395)
T ss_dssp EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE
T ss_pred EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE
Confidence 999973 122 368899999999999875 1 21 1222 25566666665
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.15 Score=55.04 Aligned_cols=188 Identities=12% Similarity=0.115 Sum_probs=112.2
Q ss_pred EEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcC
Q 011126 291 KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (493)
Q Consensus 291 ~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 370 (493)
+|++.+..++.|+.+|.|.+.+- .-+.+..++..........+..+....++++..+... ....+.+|+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~----------np~llkiw~ 98 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG----------NPVLLKIWD 98 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCC----------CceEEEEec
Confidence 46788889999999998877762 2333355555444422223333333344444333321 111445555
Q ss_pred CCceeecccce----EEEec-----CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECC--CC---cEEEEecCCCcEEEEE
Q 011126 371 PKVFRLLEKPL----HEFQG-----HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG--ID---RCLRVFSHNNYVTSVA 435 (493)
Q Consensus 371 ~~~~~~~~~~~----~~~~~-----h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~--~~---~~~~~~~h~~~V~~v~ 435 (493)
....+....|. +.+.. ...++.+|+.+.+- .++.|-.+|.|..+.-. .. +......-..+||.++
T Consensus 99 lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 99 LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 54332222121 12222 35578899999887 88999999999998532 11 1111223568999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEeCCCCe--EEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 436 FNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~--~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+.. ++..++-...-..|.+|.+.... ......+...+++..+++.-.-+++++.
T Consensus 179 ~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 179 LRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred Eec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence 998 77763434445679999998555 2236667778888888876654555554
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.71 E-value=0.026 Score=58.11 Aligned_cols=95 Identities=22% Similarity=0.267 Sum_probs=63.4
Q ss_pred EEEEeCCC--eEEEEeCCCe--EEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC-CC--eEEEEeCCCCeEE
Q 011126 393 DLSWSKNG--FLLSSSADKT--VRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVV 464 (493)
Q Consensus 393 ~l~~sp~g--~l~sgs~Dg~--V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~IWdl~~~~~~ 464 (493)
.-+|+|+| ++++...|+. |.+.|+..+...+ +. ..+.-+.-.|+| +|++++-.+. .| .|.++++..+++.
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 45799999 6667777776 5555777766444 43 233334678999 9998886654 34 4777777777665
Q ss_pred EecCCCCCeEEEEEccCCCEEEEee
Q 011126 465 DYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+......-..-.|+|||++++..+
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEe
Confidence 4433333333778999999998766
No 345
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.71 E-value=0.38 Score=47.33 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=44.8
Q ss_pred eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCCCeEEEec
Q 011126 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVVDYT 467 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~~~~~~~~ 467 (493)
.|.++|+.+++.+..+....++.+|+.+..+..+|++. ..++.|.|||..+++++...
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 48888999999999998777888999998444466654 45899999999999988543
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.61 E-value=0.51 Score=46.80 Aligned_cols=167 Identities=18% Similarity=0.242 Sum_probs=97.5
Q ss_pred CCeEEeeec----------CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 247 DHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 247 g~~lasgs~----------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
..++++|+. .|+|.++++.+.......+..... ....++|++|+-- ++ +|+.+. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCc
Confidence 467777653 299999999874110011111111 2357889998876 44 454443 478999998665
Q ss_pred e-eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 317 E-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 317 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
+ ... ...+. ....++++.
T Consensus 118 ~~l~~------------------------------------------------------------~~~~~-~~~~i~sl~ 136 (321)
T PF03178_consen 118 KTLLK------------------------------------------------------------KAFYD-SPFYITSLS 136 (321)
T ss_dssp SSEEE------------------------------------------------------------EEEE--BSSSEEEEE
T ss_pred ccchh------------------------------------------------------------hheec-ceEEEEEEe
Confidence 5 111 11111 123566776
Q ss_pred EeCCCeEEEEeCCCeEEEEECCC-CcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC-------C--e
Q 011126 396 WSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-------C--Q 462 (493)
Q Consensus 396 ~sp~g~l~sgs~Dg~V~lWd~~~-~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~-------~--~ 462 (493)
...+ +++.|...+.|.++..+. ...+..+. ....++++.|-+ +++.++.+..+|.|.++.... + +
T Consensus 137 ~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~ 214 (321)
T PF03178_consen 137 VFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPK 214 (321)
T ss_dssp EETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTB
T ss_pred cccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCccccccccc
Confidence 6644 888888888888875543 33344443 566799999987 557999999999999998862 2 2
Q ss_pred EE--EecCCCCCeEEE---EEcc
Q 011126 463 VV--DYTDIREIVSAV---CYCP 480 (493)
Q Consensus 463 ~~--~~~~~~~~I~sv---~~sp 480 (493)
+. ........|+++ ++.|
T Consensus 215 L~~~~~f~lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 215 LERISSFHLGDIVNSFRRGSLIP 237 (321)
T ss_dssp EEEEEEEE-SS-EEEEEE--SS-
T ss_pred ceeEEEEECCCccceEEEEEeee
Confidence 32 344556778888 5556
No 347
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.59 E-value=0.73 Score=45.31 Aligned_cols=105 Identities=11% Similarity=0.191 Sum_probs=68.2
Q ss_pred EecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC--C----cEEEEe-c-CCCcEEEEEEccCCCCEEEEEeCCC-e
Q 011126 384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--D----RCLRVF-S-HNNYVTSVAFNPVDDNYFISGSIDG-K 452 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~--~----~~~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~Dg-~ 452 (493)
+..|-..-+.|+|||++ ++++=+..+.|.-|++.. + +....+ . ..+..-.++... ++++.+++..+| .
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~ 236 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGR 236 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCce
Confidence 34445556789999999 555556668888887752 1 111111 1 345566677777 888887655554 9
Q ss_pred EEEEeCCCCeEEEecCCC-CCeEEEEEc-cCCCEEEEeec
Q 011126 453 VRIWEVRRCQVVDYTDIR-EIVSAVCYC-PDGKVRQNSAC 490 (493)
Q Consensus 453 V~IWdl~~~~~~~~~~~~-~~I~sv~~s-pdG~~l~s~s~ 490 (493)
|.+|+.. ++++...... ..+++++|- |+.+.|.+.+.
T Consensus 237 v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 237 VVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 9999998 7666543333 778888884 56666665554
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.56 E-value=0.05 Score=59.56 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=74.7
Q ss_pred cceEEEecCCCC-EeEEEEeC-----CC-eEEEEeCCCeEEEEECCCCc--EEE----EecCCCcEEEEEEccCCCCEEE
Q 011126 379 KPLHEFQGHSSE-VLDLSWSK-----NG-FLLSSSADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 379 ~~~~~~~~h~~~-V~~l~~sp-----~g-~l~sgs~Dg~V~lWd~~~~~--~~~----~~~h~~~V~~v~fsp~d~~~l~ 445 (493)
+.+.....|... |.+++=.. +. ..+.|-.++.+..||.+-.. ++. .+......+|++-+. ..+||
T Consensus 515 KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~--~G~ia 592 (794)
T PF08553_consen 515 KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE--DGYIA 592 (794)
T ss_pred cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC--CceEE
Confidence 335555555433 55543321 12 56677788899999998643 222 223556778887765 56899
Q ss_pred EEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126 446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 446 sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.|+.+|.||+||--..+.. .+.+...+|..|..+.||+++++.+.
T Consensus 593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 9999999999995432222 36678899999999999999977653
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.022 Score=60.64 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=70.0
Q ss_pred CC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC----CCCEEEEEeCCCeEEEEeCC---CCeEEEecCCC
Q 011126 399 NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVR---RCQVVDYTDIR 470 (493)
Q Consensus 399 ~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~----d~~~l~sgs~Dg~V~IWdl~---~~~~~~~~~~~ 470 (493)
.| ++++|+.||+|.|-.+-+.+...++...-++.+|+++|. ..+.+++|+.-| +.++.-+ ....+......
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 46 999999999999999999999998988899999999992 256899999998 7777643 22333456677
Q ss_pred CCeEEEEEccCCCEEEEeec
Q 011126 471 EIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 471 ~~I~sv~~spdG~~l~s~s~ 490 (493)
++|.+++|. |.++|=++.
T Consensus 161 G~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 161 GPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred cceEEEEec--CcEEEEecC
Confidence 899999985 445555443
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.50 E-value=1.1 Score=45.08 Aligned_cols=234 Identities=13% Similarity=0.144 Sum_probs=121.7
Q ss_pred ccCCCeEEee---------ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126 244 KPGDHELTLG---------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 244 sp~g~~lasg---------s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~ 314 (493)
|||+++++.. +..+.+.|+|+.+.... . +......+....|+|+|++||-.. ++.|.++++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~--~------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT--P------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE--E------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE--E------CcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 5677766663 23467888888864322 1 111256788999999999998875 5689999987
Q ss_pred CCeeeeeeecc-----------------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCC--------------
Q 011126 315 EHERLDGFDVQ-----------------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD-------------- 363 (493)
Q Consensus 315 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------------- 363 (493)
++...+.-... ......+.|++++. .++.+..+...+...........
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~-~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk 150 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK-YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK 150 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS-EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCC-EEEEEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence 77443222211 11234455555554 33333333333332222221111
Q ss_pred -------ceEEEcCCCceeecccceEEE---ecCCCCEeEEEEeCCC-eEEEE--eCCC---eEEEEECCCCcEEEEec-
Q 011126 364 -------LTCVVLPPKVFRLLEKPLHEF---QGHSSEVLDLSWSKNG-FLLSS--SADK---TVRLWQVGIDRCLRVFS- 426 (493)
Q Consensus 364 -------~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~sp~g-~l~sg--s~Dg---~V~lWd~~~~~~~~~~~- 426 (493)
..+.+++....... .+... ..-...+..+.|.+++ .|+.. ..+. .+.+.|..++.+...+.
T Consensus 151 ~G~~np~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 151 AGDPNPRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp TTS---EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CCCcCCceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 11112222111110 01111 1234467889999988 34433 3332 36667887765544332
Q ss_pred -CCCcE---EEEEEc-cCCCCEEEEEeCCC--eEEEEeCCCCeEEEecCCCCCeEE-EEEccCCCEEEEee
Q 011126 427 -HNNYV---TSVAFN-PVDDNYFISGSIDG--KVRIWEVRRCQVVDYTDIREIVSA-VCYCPDGKVRQNSA 489 (493)
Q Consensus 427 -h~~~V---~~v~fs-p~d~~~l~sgs~Dg--~V~IWdl~~~~~~~~~~~~~~I~s-v~~spdG~~l~s~s 489 (493)
....| ..+.|. +....+|.....|| .|.+++..++....+....-.|+. +.|+++++.|...+
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a 299 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTA 299 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEE
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEe
Confidence 22222 245554 63555665666776 466667777777777777777855 67899988765443
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.96 Score=46.08 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=116.9
Q ss_pred cceeccCCCe-EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC---CCcEEEEecCC
Q 011126 240 SATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIE 315 (493)
Q Consensus 240 ~~~fsp~g~~-lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~V~iWdl~~ 315 (493)
.+++++.+.. .+....+..|.+.|......... ...+. .-..++++|+++.+..+.. ++++.+.|-.+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~------~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t 149 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS------IPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT 149 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE------eeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence 3778888874 44455668999999543321110 11122 4567899999987776655 56777777666
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
.+...... .+ ..+ ..++
T Consensus 150 ~~~~~~~~-------------------------------------------------------------vG-~~P-~~~a 166 (381)
T COG3391 150 NKVTATIP-------------------------------------------------------------VG-NTP-TGVA 166 (381)
T ss_pred CeEEEEEe-------------------------------------------------------------cC-CCc-ceEE
Confidence 55433211 11 122 7889
Q ss_pred EeCCC--eEEEEeCCCeEEEEECCCCcEEE-----EecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCCeEEE
Q 011126 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLR-----VFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD 465 (493)
Q Consensus 396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~-----~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~~~~~ 465 (493)
+.|+| .+++-..+++|.+.|.......+ ..........+.++| ++.++...... +.+.+.|..++.+..
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 99998 44455688999999987766664 233444556799999 88865554433 699999999998886
Q ss_pred ecCC-CC-CeEEEEEccCCCEEEEee
Q 011126 466 YTDI-RE-IVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 466 ~~~~-~~-~I~sv~~spdG~~l~s~s 489 (493)
.... .. ....+..+|+|+.+.+..
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVAN 271 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEe
Confidence 4222 12 467789999999988774
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.97 E-value=0.49 Score=44.94 Aligned_cols=207 Identities=12% Similarity=0.193 Sum_probs=97.4
Q ss_pred eeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 231 MARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
+.+..+.+..++|.|+. .++++....+.|...+.... .+... .+.+ .+..-.|++..++.++++--.++.+.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~--vlr~i----~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK--VLRRI----PLDG-FGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEE----E-SS--SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC--EEEEE----eCCC-CCCceeEEEECCCEEEEEEcCCCcEE
Confidence 34444556679999975 56677778888887776422 12211 2233 35678889988887777665689999
Q ss_pred EEecCCCee------eeeeeccC-----CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 310 VWKVIEHER------LDGFDVQD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 310 iWdl~~~~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
+.++..... ...+.... ...-.+++.+.....++.-.-.+..+....... ....+.+. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~--~~~~~~~~-------~~ 160 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP--GGFDLFVS-------DD 160 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT---SS--EEE-------E-
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc--Cccceeec-------cc
Confidence 999843221 11222111 112334443333322222111110100000000 00001000 00
Q ss_pred cceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCC----------CcEEEEEEccCCCCEEEE
Q 011126 379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHN----------NYVTSVAFNPVDDNYFIS 446 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~----------~~V~~v~fsp~d~~~l~s 446 (493)
............+.+++++|.. +++.+...+.|.++| ..++.+..+.-. ...-.|+|.| +|++.++
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIv 238 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIV 238 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEE
T ss_pred cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEE
Confidence 0111112244568899999975 777788899999999 667777766411 3577899999 8876666
Q ss_pred EeCCCeEEEE
Q 011126 447 GSIDGKVRIW 456 (493)
Q Consensus 447 gs~Dg~V~IW 456 (493)
. .-+..+++
T Consensus 239 s-EpNlfy~f 247 (248)
T PF06977_consen 239 S-EPNLFYRF 247 (248)
T ss_dssp E-TTTEEEEE
T ss_pred c-CCceEEEe
Confidence 4 55555554
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.22 Score=55.05 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=64.7
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
.+..++.|+..|.|...|...+-..+. . -..-+++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~---~---ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLH---Q---NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhh---c---CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 344678888888888888765422111 0 1123679999999999999999999999999999999999988888
Q ss_pred CCCCceEEEee
Q 011126 326 DTDPSCLYFTI 336 (493)
Q Consensus 326 ~~~~~~~~~~~ 336 (493)
..+...+.+..
T Consensus 172 ~ap~t~vi~v~ 182 (1206)
T KOG2079|consen 172 GAPVTGVIFVG 182 (1206)
T ss_pred CCccceEEEEE
Confidence 77776665443
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.89 E-value=0.12 Score=53.19 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=74.5
Q ss_pred ecCCCCEeEEEEeCCC-eEE--EE-eCC-CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCC--eEEEE
Q 011126 385 QGHSSEVLDLSWSKNG-FLL--SS-SAD-KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDG--KVRIW 456 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~--sg-s~D-g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg--~V~IW 456 (493)
..-...+..-+|+|++ .++ +- ... ..+.++++.+++..........-..-+|+| |++.|+-. ..|| .|+++
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEEEE
Confidence 3334566677899988 322 22 222 469999999988877777666666789999 88877654 4555 47778
Q ss_pred eCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 457 EVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 457 dl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
|+.+++...+....+.-+.-.|+|||++++-.+..
T Consensus 268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr 302 (425)
T COG0823 268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDR 302 (425)
T ss_pred cCCCCcceecccCCccccCccCCCCCCEEEEEeCC
Confidence 88888766655555555577899999999877653
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.25 Score=50.62 Aligned_cols=151 Identities=13% Similarity=0.216 Sum_probs=93.9
Q ss_pred CCCEE-EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc
Q 011126 295 DGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV 373 (493)
Q Consensus 295 dg~~L-asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (493)
+.++| .++..-..++-.|+..|+.+...+.+.. +..+.+.+..... .......+.+-.+..+.-|++++
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~---------Ql~~e~TlvGLs~n~vfriDpRv 413 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFA---------QLTSEQTLVGLSDNSVFRIDPRV 413 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchh---------cccccccEEeecCCceEEecccc
Confidence 44444 4555556788899999999999888766 3333333332211 11122234455566677777764
Q ss_pred eeecccceEEEecC----CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEe
Q 011126 374 FRLLEKPLHEFQGH----SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS 448 (493)
Q Consensus 374 ~~~~~~~~~~~~~h----~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs 448 (493)
-... .+....+| .....|.+-..+|+++.|+.+|.|||||--..+....+. ...+|+.|..+. +|.+|+..+
T Consensus 414 ~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta-dGKwil~Tc 490 (644)
T KOG2395|consen 414 QGKN--KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA-DGKWILATC 490 (644)
T ss_pred cCcc--eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec-cCcEEEEec
Confidence 3321 12222222 334567777777899999999999999973333333333 778999999998 898877654
Q ss_pred CCCeEEEEeCC
Q 011126 449 IDGKVRIWEVR 459 (493)
Q Consensus 449 ~Dg~V~IWdl~ 459 (493)
+..+.+.++.
T Consensus 491 -~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 -KTYLLLIDTL 500 (644)
T ss_pred -ccEEEEEEEe
Confidence 5567777664
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.87 E-value=1.4 Score=42.36 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=94.0
Q ss_pred ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeee
Q 011126 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (493)
Q Consensus 244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~ 323 (493)
...++.|+.|+.+| +.+++......... ..+...|..|...|+-+.|++-+ |+.++++++..-.......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~--------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTR--------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCcccee--------EeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence 45678899999998 88888822221111 12334499999999877776654 5999999986554322110
Q ss_pred ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE--EeCCC-
Q 011126 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS--WSKNG- 400 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~sp~g- 400 (493)
.... ... . ...........+...+ -...+
T Consensus 74 ~~~~-~~~------~-----------------------------------------~~~~~~~~~~~v~~f~~~~~~~~~ 105 (275)
T PF00780_consen 74 PLAF-PKS------R-----------------------------------------SLPTKLPETKGVSFFAVNGGHEGS 105 (275)
T ss_pred cccc-ccc------c-----------------------------------------cccccccccCCeeEEeeccccccc
Confidence 0000 000 0 0000001122222222 11223
Q ss_pred eEEEEeCCCeEEEEECCCC-----cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126 401 FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~-----~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~ 466 (493)
..+.....++|.+|..... ..++.+.....+..++|.+ +.|+.|..++ ..+.|+.++....+
T Consensus 106 ~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~l 172 (275)
T PF00780_consen 106 RRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSEL 172 (275)
T ss_pred eEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceEE
Confidence 4444445568998887653 4667777889999999974 6777776554 88999997766543
No 357
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.85 E-value=1.5 Score=45.15 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=50.6
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
.+++..|+.||+| ++|.-..+|.+.+....-.+.+..+.. ......+.|+- ++..++.- ...|.+......
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg~~~~ 289 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVGPDGD 289 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEECCCCC
Confidence 4689999999999 888888899999998776677766653 36777888976 44333332 455666664433
No 358
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.85 E-value=0.034 Score=37.91 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=29.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
....|.+++|+| ..++||.|+.+|.|.|+.+.
T Consensus 10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 456799999999 99999999999999999993
No 359
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.78 E-value=2.7 Score=42.95 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=45.5
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 400 GFLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 400 g~l~sgs~Dg~V~lWd~~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
+.++.++.++.|..+|..+++.+-.... .....+... .+.+|+.++.||.|++.|..+++++.
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3677778899999999998877654331 111222222 35678889999999999999999884
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.76 E-value=0.033 Score=38.02 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=29.9
Q ss_pred cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
...|.+++|+|...+||.+..+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5543
No 361
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.68 E-value=1.1 Score=45.91 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=41.9
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEecC-CCcEE-EEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSH-NNYVT-SVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 399 ~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h-~~~V~-~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
+++|+.++.+|.|.+.|..+++.+..... ...+. ...+ .+..|+.++.||.|+.+++
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~---~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV---ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE---ECCEEEEEeCCceEEEEeC
Confidence 45888899999999999999998877752 23232 2222 2457888899999988765
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.52 E-value=0.0043 Score=64.17 Aligned_cols=154 Identities=14% Similarity=0.205 Sum_probs=95.7
Q ss_pred cccceeccC-CCeEEeee----cCCeEEEEECCCccc-cccccccceeeec-ccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 238 HGSATLKPG-DHELTLGQ----RMRRVRVHPVKKQSR-ELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 238 ~~~~~fsp~-g~~lasgs----~dg~V~vwd~~~~~~-~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
.++++|.+- .+.||+|- .|..+.|||+...-. +.... .+.+ .......++|-.+.+++++|.....+++
T Consensus 105 Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~----~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~i 180 (783)
T KOG1008|consen 105 CTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP----LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHI 180 (783)
T ss_pred ccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccc----ccccccccCccccccccCcchhhcccccchhhh
Confidence 344666554 34556553 456799999876521 11111 1122 3345668889888889999998889999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
+|+..... ....-.+..
T Consensus 181 fdlRqs~~---------------------------------------------------------------~~~svnTk~ 197 (783)
T KOG1008|consen 181 FDLRQSLD---------------------------------------------------------------SVSSVNTKY 197 (783)
T ss_pred hhhhhhhh---------------------------------------------------------------hhhhhhhhh
Confidence 99852210 000011234
Q ss_pred EeEEEEeC-CC-eEEEEeCCCeEEEEEC-C-CCcEEEEecCC-----CcEEEEEEccCCCCEEEEEeCC-CeEEEEeCC
Q 011126 391 VLDLSWSK-NG-FLLSSSADKTVRLWQV-G-IDRCLRVFSHN-----NYVTSVAFNPVDDNYFISGSID-GKVRIWEVR 459 (493)
Q Consensus 391 V~~l~~sp-~g-~l~sgs~Dg~V~lWd~-~-~~~~~~~~~h~-----~~V~~v~fsp~d~~~l~sgs~D-g~V~IWdl~ 459 (493)
+..+...| .+ ++++-. |+.|.+||. + -..++..+.|. ..+..++|+|.....+++.+.| ++|+++|+.
T Consensus 198 vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 198 VQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 45566667 33 666555 999999993 2 22333333322 3499999999777788888876 789999986
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=0.68 Score=44.02 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=45.8
Q ss_pred ceeccCCCeEEeeec-----CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 241 ~~fsp~g~~lasgs~-----dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
-.|||+|.+|...-. -|.|-|||....-. ..-++..|.-.-..|.|.+||+.|+.+ +|-|..-
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq------rvgE~~t~GiGpHev~lm~DGrtlvva--nGGIeth 186 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ------RVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETH 186 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccc------eecccccCCcCcceeEEecCCcEEEEe--CCceecc
Confidence 579999999987543 37899999874322 233566777777889999999998876 3445554
No 364
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.00 E-value=0.97 Score=45.78 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=59.3
Q ss_pred CCEeEEEEeCCCeEEEEeCCCeEEEEECCCC-----c---EEEEecC-----CCcEEEEEEccCCCCEEEEEeC------
Q 011126 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGID-----R---CLRVFSH-----NNYVTSVAFNPVDDNYFISGSI------ 449 (493)
Q Consensus 389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~-----~---~~~~~~h-----~~~V~~v~fsp~d~~~l~sgs~------ 449 (493)
...+.|++.++| |+.+......++.|.... + .+..+.. ......+.|.| ++.+.++-+.
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence 345778888888 444444444444454321 1 1122221 34477899999 8887665542
Q ss_pred -------------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 450 -------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 450 -------------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.|.|.-++..++++..+.........++|+|+|+++++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 1456667776666554433334567899999999887643
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.36 Score=49.51 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=71.7
Q ss_pred eEEEecCCCCEeEEEEeCCC---e-----EEEEeCCCeEEEEECCCCcE--EEEe-----cCCCcEEEEEEccCCCCEEE
Q 011126 381 LHEFQGHSSEVLDLSWSKNG---F-----LLSSSADKTVRLWQVGIDRC--LRVF-----SHNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp~g---~-----l~sgs~Dg~V~lWd~~~~~~--~~~~-----~h~~~V~~v~fsp~d~~~l~ 445 (493)
+....-|.. |+-+.+.|++ . -+.|-.|..|.=||.+.... +..- .......|++-. ...++|
T Consensus 369 VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~Iv 445 (644)
T KOG2395|consen 369 VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIV 445 (644)
T ss_pred eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCceEE
Confidence 344444444 6666677754 2 24455788899999884332 2221 233445566654 466899
Q ss_pred EEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEee
Q 011126 446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 446 sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.||.+|.||+||--..+.. .+.+...+|+.|..+.||++|++.+
T Consensus 446 vgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 446 VGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred EeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 9999999999998333322 4788999999999999999987654
No 366
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=0.1 Score=57.53 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=65.2
Q ss_pred eEEEEeCCCeEEEEECCCCcE--EEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCC---eE
Q 011126 401 FLLSSSADKTVRLWQVGIDRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI---VS 474 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~--~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~---I~ 474 (493)
.++.|+..|.|-..|+...-+ ..--....+|++++|+. +|.+++.|-.+|.|.+||+.++++++ +..+..+ |.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 788889899999998876422 22223678999999999 99999999999999999999988774 3444443 33
Q ss_pred EEEEccCCCEEEEee
Q 011126 475 AVCYCPDGKVRQNSA 489 (493)
Q Consensus 475 sv~~spdG~~l~s~s 489 (493)
.+.+..++..++++-
T Consensus 180 ~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSD 194 (1206)
T ss_pred EEEEeCCCcEEEEcc
Confidence 445556666666554
No 367
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.46 E-value=4.9 Score=38.64 Aligned_cols=200 Identities=13% Similarity=0.179 Sum_probs=116.0
Q ss_pred eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCC-CCceEEEeeCCCCceeeeeccCccccceeee
Q 011126 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (493)
Q Consensus 280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (493)
+.+-+..|.++.|+|+.+.|++......-.||=-.+|+.+.++..... .+..+.+..++ ..... -+ +......+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n--~fvi~-dE--R~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN--QFVIV-DE--RDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC--EEEEE-eh--hcceEEEE
Confidence 455566699999999999998888877777887788998888865432 22222222221 11111 11 11111111
Q ss_pred ecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc-EEEE--e-c-------
Q 011126 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRV--F-S------- 426 (493)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~-~~~~--~-~------- 426 (493)
....+..+....... -++......+...-.++|.|.+ .|..+-+-+-+.||.+.... .+.. . .
T Consensus 156 ~vd~~t~~~~~~~~~-----i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 156 TVDADTTVISAKVQK-----IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EEcCCccEEeccceE-----EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 112221211111100 0112222225567899999988 77777777778887765332 1111 0 0
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--EEec----CCC---CCeEEEEEccCCCEEEEee
Q 011126 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDYT----DIR---EIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~~~~----~~~---~~I~sv~~spdG~~l~s~s 489 (493)
.-..|.++.|++..+.+|+-+..++.|.-.|....-+ +.+. +.. ...-.|+..++|.+.+++-
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 1245788999997888888888899998888875532 2221 111 2356788899998776653
No 368
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=0.67 Score=51.75 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=72.4
Q ss_pred CCEeEEEEeCCC--eEEEEeCCCeEEEEECCC-CcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
....++.|+|.- ..+.+..|+.|++..+.. ......+.....++|++|+| .|..++.|-..|++.-|...-.....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccceeec
Confidence 345678898875 677788899999887753 23334456778899999999 99999999999999999765332111
Q ss_pred e----cCCCCCeEEEEEccCCCEEEEe
Q 011126 466 Y----TDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 466 ~----~~~~~~I~sv~~spdG~~l~s~ 488 (493)
+ ......|.+|+|-..-.++++=
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEe
Confidence 1 1125789999998877776653
No 369
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.32 E-value=4.8 Score=37.97 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=51.3
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
-|++++.|...|.+++.+.+++.+-- .++.-..--......+++.++..|+.|++.+..|..+..++...+..
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w-------~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIW-------NFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhhee-------eeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC
Confidence 45679999999999999887654211 11111111112345678999999999999999999988888776554
Q ss_pred C
Q 011126 326 D 326 (493)
Q Consensus 326 ~ 326 (493)
.
T Consensus 135 G 135 (354)
T KOG4649|consen 135 G 135 (354)
T ss_pred C
Confidence 3
No 370
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.30 E-value=0.57 Score=48.86 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=70.4
Q ss_pred cCCCCEeEEEEeCCC-----eEEEEeCCCeEEEEECCC-----CcEEEEe--cC----CCcEEEEEEccCCCCEEEEEeC
Q 011126 386 GHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGI-----DRCLRVF--SH----NNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-----~l~sgs~Dg~V~lWd~~~-----~~~~~~~--~h----~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
|.-..|..++|.|-+ -|++.-..+.|.||.+.. .+.+... .. .---..+.|+| ...+|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 344578999999964 677778889999999852 2222211 11 11235678999 7778777666
Q ss_pred CCeEEEEeCC--CCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 450 DGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 450 Dg~V~IWdl~--~~~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
...-.+++++ +.++..-....+.|.+.||.+||+.|+++-
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAV 174 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEe
Confidence 6555666665 334444457778999999999999888763
No 371
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.30 E-value=2.1 Score=39.62 Aligned_cols=96 Identities=9% Similarity=0.172 Sum_probs=62.3
Q ss_pred eEEEEeCCC--eEEEEeCCCeEEEEE--CCCCcE-----EEEecC-----CCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126 392 LDLSWSKNG--FLLSSSADKTVRLWQ--VGIDRC-----LRVFSH-----NNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (493)
Q Consensus 392 ~~l~~sp~g--~l~sgs~Dg~V~lWd--~~~~~~-----~~~~~h-----~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd 457 (493)
+.|+|+.+. +.++-+.+-+|.-|| ..++.. +..++. .-..-.++..- +|+++++.-..|+|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 457777665 556677777787777 444432 222211 11222345565 889999998999999999
Q ss_pred CCCCeEEE-ecCCCCCeEEEEEccC-CCEEEEe
Q 011126 458 VRRCQVVD-YTDIREIVSAVCYCPD-GKVRQNS 488 (493)
Q Consensus 458 l~~~~~~~-~~~~~~~I~sv~~spd-G~~l~s~ 488 (493)
..+++++. +.-....|+++||--- =..+++.
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 99999874 5555778999999543 3344443
No 372
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.21 E-value=2.6 Score=46.43 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=51.9
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCc----------cc--cccccccceee--ecccCCEEEEEEccC---CCEE
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQ----------SR--ELSSLYTGQEF--LAHEGSILTMKFSLD---GQYL 299 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~----------~~--~~~~~~~~~~l--~~H~~~I~~l~fspd---g~~L 299 (493)
.|..+.++|+|++||..+..|.+.+. +... .. ..........+ ..+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 34458899999999998886654443 3211 00 11111111111 234568999999995 5789
Q ss_pred EEEECCCcEEEEecCCCe
Q 011126 300 ASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 300 asgs~Dg~V~iWdl~~~~ 317 (493)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 899999999999997543
No 373
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.03 E-value=2.7 Score=39.59 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=60.7
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEE-EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCC-eEEEEE
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTS-VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI-VSAVCY 478 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~-v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~-I~sv~~ 478 (493)
.++.|+..+.+.+.+.+++.....|.....|.+ ....+ ++.++..|+.|++.+..|.++...+......+. ..+-+.
T Consensus 65 fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i 143 (354)
T KOG4649|consen 65 FVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVI 143 (354)
T ss_pred EEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceecccee
Confidence 788999999999999999988877764444433 34455 899999999999999999998877744333332 233345
Q ss_pred cc-CCCEE
Q 011126 479 CP-DGKVR 485 (493)
Q Consensus 479 sp-dG~~l 485 (493)
.| ++.+.
T Consensus 144 ~~g~~sly 151 (354)
T KOG4649|consen 144 APGDGSLY 151 (354)
T ss_pred cCCCceEE
Confidence 55 44433
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.99 E-value=0.26 Score=53.00 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=58.4
Q ss_pred CCCEeEEEEeCCC-eEEEEe------CCC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC--------
Q 011126 388 SSEVLDLSWSKNG-FLLSSS------ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-------- 450 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs------~Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-------- 450 (493)
...+...+++|+| .++..- .|. .|.+++... .. ..+......+.-.|+| ++..|++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3467889999999 443332 244 455555422 22 3333333488899999 88877776532
Q ss_pred ----CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEe
Q 011126 451 ----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 451 ----g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
+.+.+.++..+.... .....|.++.|+|||+.++..
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEE
Confidence 233333443333322 345679999999999988764
No 375
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.84 E-value=5 Score=42.34 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEE--EEEccCCCEEE
Q 011126 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA--VCYCPDGKVRQ 486 (493)
Q Consensus 440 d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~s--v~~spdG~~l~ 486 (493)
.+.+|+.++.||.|+.+|..+++++........+.+ +.|..+|+..+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv 453 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYV 453 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEE
Confidence 567888889999999999999998854444444432 23455665443
No 376
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=4 Score=41.58 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=72.1
Q ss_pred CEeEEEEeCCC-eE-EEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCCCeEE
Q 011126 390 EVLDLSWSKNG-FL-LSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 390 ~V~~l~~sp~g-~l-~sgs--~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~~~~~ 464 (493)
....++++|++ .+ ++-. .++++.+.|..+...+....-...-..+++.| ++..++.. ..++.|.+.|.....+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence 45678899988 33 3333 47999999999999888865443338999999 88855554 47899999998877666
Q ss_pred E-----ecCCCCCeEEEEEccCCCEEEEee
Q 011126 465 D-----YTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~-----~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
. ..........+.++|+|+++.+..
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~ 225 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVAN 225 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEe
Confidence 4 123334457789999999776653
No 377
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.75 E-value=1.9 Score=46.34 Aligned_cols=103 Identities=13% Similarity=0.119 Sum_probs=70.7
Q ss_pred CCCEeEEEEeCCCeEEE-EeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEcc-CCCCEEEEEeCCCeEEEEeCCC---
Q 011126 388 SSEVLDLSWSKNGFLLS-SSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP-VDDNYFISGSIDGKVRIWEVRR--- 460 (493)
Q Consensus 388 ~~~V~~l~~sp~g~l~s-gs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp-~d~~~l~sgs~Dg~V~IWdl~~--- 460 (493)
-..+.-+.-+.-+.++. -+...++.|||.+.+....... ..+.|..+.|.. .+++.+++.|....|.+|--..
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 34445555555553333 3445679999999887554433 588999999953 1788999999999999996421
Q ss_pred --C----e---EEEecCCC-CCeEEEEEccCCCEEEEeec
Q 011126 461 --C----Q---VVDYTDIR-EIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 461 --~----~---~~~~~~~~-~~I~sv~~spdG~~l~s~s~ 490 (493)
. . .+....+. .+|.+.+|-++|..++.+|+
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 1 1 12334444 68999999999988877664
No 378
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.71 E-value=1.9 Score=47.43 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=27.9
Q ss_pred cCCCCEeEEEEeCCC----eEEEEeCCCeEEEEECCC
Q 011126 386 GHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGI 418 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g----~l~sgs~Dg~V~lWd~~~ 418 (493)
.+...|..+.|+|.+ .|+.-..|+++|+||+..
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 345689999999963 888889999999999964
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.67 E-value=1.9 Score=46.53 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=56.8
Q ss_pred EeEEEEeCCC-eEEEEeCC------------CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEE--
Q 011126 391 VLDLSWSKNG-FLLSSSAD------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI-- 455 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~D------------g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I-- 455 (493)
.+.-.|+|+| .|++.... +.+.+.++..+.... .....|..+.|+| ||..++... +|+|+|
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence 5567788886 55444322 233333444433322 3356799999999 999887765 578887
Q ss_pred -EeCCCCeEE-----Ee-cCCCCCeEEEEEccCCCEEEE
Q 011126 456 -WEVRRCQVV-----DY-TDIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 456 -Wdl~~~~~~-----~~-~~~~~~I~sv~~spdG~~l~s 487 (493)
-....+... .+ ......+.++.|.+++.+++.
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~ 513 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG 513 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEEEE
Confidence 454455411 12 233445688999999996543
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.62 E-value=0.089 Score=48.24 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=36.0
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEec-CC-CcEEEEEEccCCCCEEEEE--eCCCeEEEEeCC
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HN-NYVTSVAFNPVDDNYFISG--SIDGKVRIWEVR 459 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~-~~V~~v~fsp~d~~~l~sg--s~Dg~V~IWdl~ 459 (493)
+..+++.|+.||.|++.-.+.+.... |+ .++.....+. .+++++.. |.|..++.|++.
T Consensus 116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 77888999999999998887776665 44 3333333333 34444444 455555555543
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.62 E-value=9.7 Score=39.05 Aligned_cols=227 Identities=11% Similarity=0.063 Sum_probs=104.7
Q ss_pred cceeccCCCeEEee-----ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC--------
Q 011126 240 SATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-------- 306 (493)
Q Consensus 240 ~~~fsp~g~~lasg-----s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-------- 306 (493)
...++|+|+++|.+ +....|+|+|+.++..... .+..-. -..+.|.++++.|+....+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d------~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD------GIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE------EEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC------cccccc--cceEEEeCCCCEEEEEEeCcccccccCC
Confidence 36789999998864 2234699999987632111 122111 12399999988776655433
Q ss_pred ---cEEEEecCCCeee--eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCC-ceEEEcCCCceeecccc
Q 011126 307 ---TVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD-LTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 307 ---~V~iWdl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~ 380 (493)
.|+.|.+.+...- ..+.........+..........+.+.. ..... ..+.+.+..........
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~-----------~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS-----------SSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE-----------ESSSSEEEEEEEECCCTTTSS-S
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE-----------EccccCCeEEEEeccccCCCcCC
Confidence 3777777665432 2222222222122222222222222211 11111 33333333221000112
Q ss_pred eEEEecCCCCEe-EEEEeCCC--eEEEE--eCCCeEEEEECCCCcE---E-EEecCCC--cEEEEEEccCCCCEEEEEeC
Q 011126 381 LHEFQGHSSEVL-DLSWSKNG--FLLSS--SADKTVRLWQVGIDRC---L-RVFSHNN--YVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 381 ~~~~~~h~~~V~-~l~~sp~g--~l~sg--s~Dg~V~lWd~~~~~~---~-~~~~h~~--~V~~v~fsp~d~~~l~sgs~ 449 (493)
...+..+...+. .+... ++ ++.|- ...+.|.-.++..... . ..+.+.. .+..+... .+.+++.--.
T Consensus 269 ~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~ 345 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRE 345 (414)
T ss_dssp EEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEE
T ss_pred cEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEE
Confidence 223333333343 34333 44 33332 2335666667776542 2 3444655 45555543 3344455555
Q ss_pred CC--eEEEEeCC-CCeEEEec-CCCCCeEEEEEccCCCEEEEe
Q 011126 450 DG--KVRIWEVR-RCQVVDYT-DIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 450 Dg--~V~IWdl~-~~~~~~~~-~~~~~I~sv~~spdG~~l~s~ 488 (493)
++ .|+++++. +....... ...+.|..+...+++..+...
T Consensus 346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~ 388 (414)
T PF02897_consen 346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFS 388 (414)
T ss_dssp TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEE
T ss_pred CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEE
Confidence 54 68999999 55444332 233446777767777665544
No 382
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.59 E-value=9.8 Score=39.01 Aligned_cols=193 Identities=16% Similarity=0.080 Sum_probs=88.8
Q ss_pred CEEEEEEccCCCEEEEE-ECCC----cEEEEecCCCeeeeee-eccCCCCceEEEeeCCCCceeeeeccCccccceeeee
Q 011126 286 SILTMKFSLDGQYLASG-GEDG----TVRVWKVIEHERLDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (493)
Q Consensus 286 ~I~~l~fspdg~~Lasg-s~Dg----~V~iWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (493)
.+..+.++|+|++||-+ +..| +|+++|+.+++.+... ... ....+.|..++. .++....+...... .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~-~~~y~~~~~~~~~~----~ 197 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGK-GFFYTRFDEDQRTS----D 197 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSS-EEEEEECSTTTSS-----C
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCC-EEEEEEeCcccccc----c
Confidence 34467899999988755 3444 4999999999765432 211 111244443332 22222222211100 0
Q ss_pred cCCCceEEEcCCCceeecccceEEEecCCC--CEeEEEEeCCC-e-EEEEeCC---CeEEEEECCCC-----cEEEEecC
Q 011126 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-F-LLSSSAD---KTVRLWQVGID-----RCLRVFSH 427 (493)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~g-~-l~sgs~D---g~V~lWd~~~~-----~~~~~~~h 427 (493)
......+..+...... ......+..... ....+..++++ + ++..... ..|.+.++..+ ........
T Consensus 198 ~~~~~~v~~~~~gt~~--~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQ--SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp CGCCEEEEEEETTS-G--GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred CCCCcEEEEEECCCCh--HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 1112223333222111 111122333232 25678899998 4 4444333 34778888764 33333344
Q ss_pred CCcEEEEEEccCCCCEEEEEeC---CCeEEEEeCCCCeE---E-EecCCCCCeEEEEEccCCCEEEEe
Q 011126 428 NNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQV---V-DYTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 428 ~~~V~~v~fsp~d~~~l~sgs~---Dg~V~IWdl~~~~~---~-~~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
...+....-+. .+.+++.... .+.|.-.++.+... . .+..+...+.-..+...+.+|+..
T Consensus 276 ~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 276 EDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp SSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE
T ss_pred CCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE
Confidence 44444333333 3444444322 46777778876541 2 344555543334444556666554
No 383
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.45 E-value=3 Score=40.01 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=58.0
Q ss_pred EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEE---------------EecCCCcEEEEE-EccCCCCEEEEEeCCCeE
Q 011126 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR---------------VFSHNNYVTSVA-FNPVDDNYFISGSIDGKV 453 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~---------------~~~h~~~V~~v~-fsp~d~~~l~sgs~Dg~V 453 (493)
|..|...|.- .|+.-+ |+.+.++++..-.... .+.....+...+ -....+...+......+|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 8888888865 333333 5999999987543333 222334455444 112234444444555689
Q ss_pred EEEeCCCC-----eEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 454 RIWEVRRC-----QVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 454 ~IWdl~~~-----~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.||..... +...-......+.+++|. +..+++|.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence 99888753 344455566889999999 55666654
No 384
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.30 E-value=7.8 Score=36.96 Aligned_cols=179 Identities=13% Similarity=0.176 Sum_probs=105.7
Q ss_pred CEEEEEEccCCCEEEEEECCC--cEEEEecCCCeeeeeeeccCCCCce-EEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126 286 SILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSC-LYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (493)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg--~V~iWdl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 362 (493)
-...+.|..+|.++-+.|.-| .|+.+|+.+++.......+..-..- +... ...++.+.+ .
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTW--------------k 108 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTW--------------K 108 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEES--------------S
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEe--------------c
Confidence 456788878888888888776 6999999999887766655432110 1110 011111111 2
Q ss_pred CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CC---CcEEEEE
Q 011126 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HN---NYVTSVA 435 (493)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~---~~V~~v~ 435 (493)
++..++++...+.. +.++.- .+.=..|+ .++ .|+.+.....|+++|..+.+..+.+. .. ..++-+.
T Consensus 109 ~~~~f~yd~~tl~~----~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 109 EGTGFVYDPNTLKK----IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp SSEEEEEETTTTEE----EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred CCeEEEEccccceE----EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 33445555554433 333322 23445565 344 66666667889999998887777765 22 3456677
Q ss_pred EccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-------------C---CCCeEEEEEccCCCEEEEeec
Q 011126 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-------------I---REIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~-------------~---~~~I~sv~~spdG~~l~s~s~ 490 (493)
|- +|.+.|=.=....|...|..+|+++.+.+ . .+..+.|+|.|..+.+.+.|.
T Consensus 182 ~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 182 YI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 75 57677766667789999999999875321 1 356899999999887776653
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.85 E-value=0.5 Score=43.46 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=40.3
Q ss_pred CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEE-EEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM-KFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l-~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
+..+++|+.+|.|.+|+........ ..+ ..-...|-++ .-..++.+..+++.||.||.|++.-.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~-d~~-----~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHS-DRV-----CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred CceEEeecccceEEEecCCccchHH-Hhh-----hcccccceeccccccccceeEEeccCCceeeeccccCc
Confidence 4568899999999999876222111 111 1112233332 222355688899999999999986544
No 386
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.81 E-value=6.6 Score=38.81 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=63.8
Q ss_pred CCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCc-EEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC--CC
Q 011126 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RC 461 (493)
Q Consensus 387 h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~-~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~--~~ 461 (493)
..++|++|+-- +++|+.+. .+.|.+|++...+ .+..-. ....++++... +++++.|..-..|.++..+ ..
T Consensus 87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence 47889999876 44544444 4899999998877 444333 44577777765 4699999988888877544 33
Q ss_pred eEEE--ecCCCCCeEEEEEccCCCEEEEeec
Q 011126 462 QVVD--YTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 462 ~~~~--~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
++.. .......++++.|-+|++.++++..
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence 3432 2334556899999877776666544
No 387
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.77 E-value=0.032 Score=60.11 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=93.4
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEE-----------EccCCCEEEEEEC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK-----------FSLDGQYLASGGE 304 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~-----------fspdg~~Lasgs~ 304 (493)
+.|.+.-|-++.-++..+-.++.|++.++...... .+.+|...+..++ .+|||+.+|.+..
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--------l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--------LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHHH--------HHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 45555667777788888989999999887644331 2445666555543 5899999999999
Q ss_pred CCcEEEEecC-CC----eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc-
Q 011126 305 DGTVRVWKVI-EH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE- 378 (493)
Q Consensus 305 Dg~V~iWdl~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~- 378 (493)
||.++.|.+. ++ .++...+.+...+..+..+.++......+ ......+-+.......++|....|...-
T Consensus 256 dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i-----~~w~~~Itttd~nre~k~w~~a~w~Cll~ 330 (1283)
T KOG1916|consen 256 DGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSI-----GKWVLRITTTDVNREEKFWAEAPWQCLLD 330 (1283)
T ss_pred CCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcc-----ceeEEEEecccCCcceeEeeccchhhhhh
Confidence 9999999873 22 23344444443333333333322211111 1111222233334445555554443320
Q ss_pred ---cceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC
Q 011126 379 ---KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI 418 (493)
Q Consensus 379 ---~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~ 418 (493)
..+.....|.+.|+.+..+.-- .+++.+.+++|.+|.-+.
T Consensus 331 ~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 331 KLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred hcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 1122223455555554332211 455667888999996543
No 388
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.75 E-value=0.14 Score=55.47 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=48.9
Q ss_pred EeCCC-eEEEEeCCCeEEEEECC-----CCcEEEEec-CC-CcEEEEEEccC--------CCCEEEEEeC-CCeEEEEeC
Q 011126 396 WSKNG-FLLSSSADKTVRLWQVG-----IDRCLRVFS-HN-NYVTSVAFNPV--------DDNYFISGSI-DGKVRIWEV 458 (493)
Q Consensus 396 ~sp~g-~l~sgs~Dg~V~lWd~~-----~~~~~~~~~-h~-~~V~~v~fsp~--------d~~~l~sgs~-Dg~V~IWdl 458 (493)
.+||| .+++++.||.++.|.+. .-+|++.++ |. .+-.|.-++.. --.++++++. +..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 78999 99999999999999764 334555554 44 33333334321 0123455443 456888877
Q ss_pred CCCeEEEecCCCCCeEEEEEccCCC
Q 011126 459 RRCQVVDYTDIREIVSAVCYCPDGK 483 (493)
Q Consensus 459 ~~~~~~~~~~~~~~I~sv~~spdG~ 483 (493)
...++. +....+.|..|. -|||+
T Consensus 323 a~w~Cl-l~~~~d~v~iV~-p~~~~ 345 (1283)
T KOG1916|consen 323 APWQCL-LDKLIDGVQIVG-PHDGE 345 (1283)
T ss_pred cchhhh-hhhcccceEeec-CCCcc
Confidence 655544 223334455554 44443
No 389
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=1.7 Score=49.79 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=48.0
Q ss_pred EecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
+.-|..++.+..+.....++.+..-+.+-+|+.........+. +....+.+ ++..++++..||.+.+||...++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 194 LSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYL----PNGQLESR-DGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcc----cccccCcc-CCceEEEEEecCCEEeeecCCCce
Confidence 3345556666665544444445555667777755444433332 11112266 899999999999999999998755
Q ss_pred E
Q 011126 464 V 464 (493)
Q Consensus 464 ~ 464 (493)
+
T Consensus 269 ~ 269 (993)
T KOG1983|consen 269 Q 269 (993)
T ss_pred e
Confidence 3
No 390
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.60 E-value=17 Score=36.75 Aligned_cols=246 Identities=11% Similarity=0.066 Sum_probs=105.5
Q ss_pred eeecccccceeccCCCeEEee-ecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 233 RIIDRHGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasg-s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+|..--..-+|.++|+.|+.+ ..+|.-.+|-+.-...+... |..+. .......++|+.+.|+-......|+-
T Consensus 33 ~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q------LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~ 106 (386)
T PF14583_consen 33 SHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ------LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRR 106 (386)
T ss_dssp EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEE
T ss_pred ccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE------CccCCCCCccceEEecCCCeEEEEECCCeEEE
Confidence 333333446789999766654 44666555543322222221 22222 11224567788888766666678888
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCcee-eeeccCccc---cce----eeeecCCCceEEEcCCCceeecccceE
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI-PIDVDKEKI---DKT----KSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~----~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
-|+.+.+....+..+..-.....+..+.....+ .+....... ... ..+.......++.++.+.. ...
T Consensus 107 vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-----~~~ 181 (386)
T PF14583_consen 107 VDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-----ERK 181 (386)
T ss_dssp EETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------EE
T ss_pred EECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-----cee
Confidence 999998876666666554444455544443332 221111100 000 0011222222333333221 123
Q ss_pred EEecCCCCEeEEEEeCCC--eEEEEeC---CCe-EEEEECCC-CcEEEEe-c--CCCcEEEEEEccCCCCEEEEEe----
Q 011126 383 EFQGHSSEVLDLSWSKNG--FLLSSSA---DKT-VRLWQVGI-DRCLRVF-S--HNNYVTSVAFNPVDDNYFISGS---- 448 (493)
Q Consensus 383 ~~~~h~~~V~~l~~sp~g--~l~sgs~---Dg~-V~lWd~~~-~~~~~~~-~--h~~~V~~v~fsp~d~~~l~sgs---- 448 (493)
.+..-...+.-+.|+|.. +|+-|-+ +.. -|||-+++ +...+.+ . ....+..=-|.| +|..|.--+
T Consensus 182 ~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~ 260 (386)
T PF14583_consen 182 VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPG 260 (386)
T ss_dssp EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETT
T ss_pred EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCC
Confidence 333345567788899987 5554432 221 36675543 2222222 2 334566667888 777655322
Q ss_pred -CCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 449 -IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 449 -~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
.+..|.-+|+.+++...+... ....-+.-++||+++|.=|+|
T Consensus 261 ~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 261 GQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred CCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 244577778887765433222 234566678999998876654
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.48 E-value=0.76 Score=30.50 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=26.1
Q ss_pred CCEEEEEEccCC---CEEEEEECCCcEEEEecCC
Q 011126 285 GSILTMKFSLDG---QYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 285 ~~I~~l~fspdg---~~Lasgs~Dg~V~iWdl~~ 315 (493)
++|.+++|+|+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999844 4888888889999999975
No 392
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.11 E-value=5.9 Score=33.54 Aligned_cols=88 Identities=13% Similarity=0.179 Sum_probs=63.3
Q ss_pred eEEEEeCCCeEEEEECC--------CCcEEEEecCCCcEEEEEEccC----CCCEEEEEeCCCeEEEEeCCCCeEEEecC
Q 011126 401 FLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~--------~~~~~~~~~h~~~V~~v~fsp~----d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~ 468 (493)
-|+.++.-+.|.|++.. ....+..+.....|++|+-.|- ....|+.|+ ...|-.||+....-+.++.
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhh
Confidence 67778888999999865 3345666777788888866552 345677766 4569999999888887788
Q ss_pred CCCCeEEEEEcc----CCCEEEEee
Q 011126 469 IREIVSAVCYCP----DGKVRQNSA 489 (493)
Q Consensus 469 ~~~~I~sv~~sp----dG~~l~s~s 489 (493)
..+.|+++.+-. +...+++|+
T Consensus 91 ~~DGvn~i~~g~~~~~~~~l~ivGG 115 (136)
T PF14781_consen 91 VPDGVNAIVIGKLGDIPSPLVIVGG 115 (136)
T ss_pred CccceeEEEEEecCCCCCcEEEECc
Confidence 888888887732 344555554
No 393
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.00 E-value=5.5 Score=39.16 Aligned_cols=109 Identities=14% Similarity=0.104 Sum_probs=69.5
Q ss_pred cccccceeccCCCeEEeee-cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC-cEEEEec
Q 011126 236 DRHGSATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKV 313 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-~V~iWdl 313 (493)
...+.++|+||++.|...- ..++|.-|++...............+..+.+.-=.++...+|.+.+++..+| .|.+|+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 3445699999998776664 4588888887642111111111112223445566777888888776555554 8999998
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeee
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPI 345 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (493)
. ++.+..+..+...+.++.|--.....++..
T Consensus 243 d-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 243 D-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred C-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 7 999999998877677766655544444433
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.93 E-value=6.7 Score=42.29 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=47.2
Q ss_pred CCCCEeEEEEeC--CC-eEEEEeCCCeEEEEECC---------CCcEEEEec---CC-CcEEEEEEccCCCCEEEEEeCC
Q 011126 387 HSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVG---------IDRCLRVFS---HN-NYVTSVAFNPVDDNYFISGSID 450 (493)
Q Consensus 387 h~~~V~~l~~sp--~g-~l~sgs~Dg~V~lWd~~---------~~~~~~~~~---h~-~~V~~v~fsp~d~~~l~sgs~D 450 (493)
..+.|.++.|.. ++ .+++.+..+.|.+|--. +...++.+. |+ .+|....|.+ +|.+++.. +
T Consensus 71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--G 147 (631)
T PF12234_consen 71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--G 147 (631)
T ss_pred CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--C
Confidence 467788888864 55 77778888888888532 123344442 44 6899999998 77665543 4
Q ss_pred CeEEEEeCC
Q 011126 451 GKVRIWEVR 459 (493)
Q Consensus 451 g~V~IWdl~ 459 (493)
+.+.|+|-.
T Consensus 148 Nqlfv~dk~ 156 (631)
T PF12234_consen 148 NQLFVFDKW 156 (631)
T ss_pred CEEEEECCC
Confidence 568888753
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.62 E-value=17 Score=39.14 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=54.5
Q ss_pred CC-eEEEEeCC------CeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCC-----eEEEEeCCCCeE
Q 011126 399 NG-FLLSSSAD------KTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQV 463 (493)
Q Consensus 399 ~g-~l~sgs~D------g~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg-----~V~IWdl~~~~~ 463 (493)
+| +.++|+.+ .+|..||..++.....-. ...... ++.- ++.+.+.||.|+ +|..||..+.+.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCce
Confidence 45 66666644 457788887766543322 111122 3322 678889999887 388899998887
Q ss_pred EEecCCCCCeEEEEEcc-CCCEEEEeecCC
Q 011126 464 VDYTDIREIVSAVCYCP-DGKVRQNSACNF 492 (493)
Q Consensus 464 ~~~~~~~~~I~sv~~sp-dG~~l~s~s~d~ 492 (493)
........+...+.... +++..++|+.++
T Consensus 504 ~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred eEcccCccccccccEEEECCEEEEEecccC
Confidence 76554444444443333 556666776553
No 396
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.28 E-value=1.5 Score=40.84 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=55.0
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-------cccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-------AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-------~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
+.+...+++|++-+.+|.+++||+.+.+..+........+. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 45678899999999999999999998776555422222222 4667899999999998777665 578899986
Q ss_pred C
Q 011126 314 I 314 (493)
Q Consensus 314 ~ 314 (493)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 4
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.27 E-value=1 Score=29.87 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=26.6
Q ss_pred CcEEEEEEccCCC--CEEEEEeCCCeEEEEeCCC
Q 011126 429 NYVTSVAFNPVDD--NYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 429 ~~V~~v~fsp~d~--~~l~sgs~Dg~V~IWdl~~ 460 (493)
+.|.++.|+|..+ .+|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998445 6888888889999999995
No 398
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.27 E-value=2.7 Score=40.08 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=63.9
Q ss_pred CEeEEEEeCCC-eEEEEe-CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEe-CCCCe--EE
Q 011126 390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQ--VV 464 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd-l~~~~--~~ 464 (493)
.+...++++++ .++... .++.-.||-...+...........++.-.|++ ++.+.+....+...+++. ...++ .+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68899999999 444433 33444444444444433333444788899999 788777777777777774 33332 22
Q ss_pred --EecCCCCCeEEEEEccCCCEEEEee
Q 011126 465 --DYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 --~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+......|+++.++|||..++.-.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEE
Confidence 3333333899999999999887654
No 399
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=11 Score=34.57 Aligned_cols=90 Identities=18% Similarity=0.294 Sum_probs=52.9
Q ss_pred ecCCCceEEEcCCCceeecccceEEEecC-CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-----------
Q 011126 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----------- 426 (493)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~----------- 426 (493)
.......+...+++.+....+...++.+. -..++-+.|-...++|-.=.+..|..-|..+++.+..+.
T Consensus 145 msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~ 224 (262)
T COG3823 145 MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLD 224 (262)
T ss_pred eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCcc
Confidence 34444455555666666554444444432 223445555432244444445556666777888776653
Q ss_pred --CCCcEEEEEEccCCCCEEEEEe
Q 011126 427 --HNNYVTSVAFNPVDDNYFISGS 448 (493)
Q Consensus 427 --h~~~V~~v~fsp~d~~~l~sgs 448 (493)
|.+-.+.|++.|..++++++|-
T Consensus 225 ~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 225 KSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccccccccceeecCcCCeEEEecC
Confidence 4557889999996668888874
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.98 E-value=11 Score=38.52 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=32.2
Q ss_pred CcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCCC---eEEE--ec---------------CCCCCeEEEEEccCCCEEEE
Q 011126 429 NYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRC---QVVD--YT---------------DIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~~---~~~~--~~---------------~~~~~I~sv~~spdG~~l~s 487 (493)
.-|+.|.++. |.++|.... .+|.||.||+.+. +++. +. ...+...-|..|-||+.|.+
T Consensus 312 ~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 312 PLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp -----EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 4589999999 888877665 5899999999863 3331 11 11223467889999999988
Q ss_pred eec
Q 011126 488 SAC 490 (493)
Q Consensus 488 ~s~ 490 (493)
.++
T Consensus 391 TnS 393 (461)
T PF05694_consen 391 TNS 393 (461)
T ss_dssp E--
T ss_pred Eee
Confidence 764
No 401
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.81 E-value=11 Score=38.13 Aligned_cols=71 Identities=4% Similarity=0.020 Sum_probs=37.6
Q ss_pred cccceeccCCCeEEeee-----------cCC-eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126 238 HGSATLKPGDHELTLGQ-----------RMR-RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs-----------~dg-~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D 305 (493)
...++|.++|+++++-. ..+ +|.+++-......... ...+...-...+.|+|.++| +++ +...
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~---~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK---SNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce---eEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 34589999999887742 223 7777765432211110 11222223346788998888 444 4444
Q ss_pred CcEEEEec
Q 011126 306 GTVRVWKV 313 (493)
Q Consensus 306 g~V~iWdl 313 (493)
...++.+.
T Consensus 91 ~i~~~~d~ 98 (367)
T TIGR02604 91 DILFLRDK 98 (367)
T ss_pred eEEEEeCC
Confidence 33333343
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.64 E-value=16 Score=38.53 Aligned_cols=93 Identities=13% Similarity=0.177 Sum_probs=58.3
Q ss_pred EEEEeCCC-eEEEEeCCCeEEEEECCC--CcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCCCeEE----
Q 011126 393 DLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV---- 464 (493)
Q Consensus 393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~--~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~~~~~---- 464 (493)
...|+|.. .|+.-.....-.+++++. .+...-++..+.|.|.+|.+ ||+.|+.+ +..=.-+|||-....+.
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~~Csf 195 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLHRCSF 195 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhhhCCc
Confidence 45689987 555544444444566653 34445556888999999999 77766654 34446789987644322
Q ss_pred -EecCCCCCeEEEEEccCCCEEE
Q 011126 465 -DYTDIREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 465 -~~~~~~~~I~sv~~spdG~~l~ 486 (493)
...+..+.|.+|.-.-|.+..+
T Consensus 196 cPVFdv~~~Icsi~AT~dsqVAv 218 (671)
T PF15390_consen 196 CPVFDVGGYICSIEATVDSQVAV 218 (671)
T ss_pred ceeecCCCceEEEEEeccceEEE
Confidence 2455556777776555555443
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.29 E-value=21 Score=34.14 Aligned_cols=183 Identities=11% Similarity=0.095 Sum_probs=98.2
Q ss_pred ceeccCCCeEEeeecCC--eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126 241 ATLKPGDHELTLGQRMR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
+.|..+|.++-+.+..| .|+.+++.+.+..... .+.. .--=-.|.... ++...-.=.++...+||..+.+.
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-----~l~~-~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-----PLPP-RYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-----E-TT-T--EEEEEEET-TEEEEEESSSSEEEEEETTTTEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-----ECCc-cccceeEEEEC-CEEEEEEecCCeEEEEccccceE
Confidence 66767888877777766 6788887765432111 0100 00111222222 22222334678899999999988
Q ss_pred eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEEEe
Q 011126 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWS 397 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~s 397 (493)
+.++.... ..+.+. .++. ..+.......+..+++..+....+......+ .-..++-|.|-
T Consensus 123 ~~~~~y~~-EGWGLt--~dg~----------------~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 123 IGTFPYPG-EGWGLT--SDGK----------------RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EEEEE-SS-S--EEE--ECSS----------------CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred EEEEecCC-cceEEE--cCCC----------------EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 88876652 333333 1111 1223334455666676666543322111111 12345667776
Q ss_pred CCC-eEEEEeCCCeEEEEECCCCcEEEEec-------------C---CCcEEEEEEccCCCCEEEEEeCC
Q 011126 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------------H---NNYVTSVAFNPVDDNYFISGSID 450 (493)
Q Consensus 398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-------------h---~~~V~~v~fsp~d~~~l~sgs~D 450 (493)
+| ++|=.=....|..-|..+|.++..+. + .+-.+.|+++|..+++++||=.=
T Consensus 184 -~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W 252 (264)
T PF05096_consen 184 -NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW 252 (264)
T ss_dssp -TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-
T ss_pred -cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC
Confidence 45 55555566778888999999888763 1 34689999999777788887443
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.17 E-value=4 Score=38.04 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=49.4
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEe---------------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVF---------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~---------------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
+|++-+.+|.+++||+.+++++..- .....|..+.++. +|.-|++-+ +|..+.|+..-+..+.
T Consensus 24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPDLGCWIR 101 (219)
T ss_pred EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccccceeEE
Confidence 8889999999999999988765433 2346788999997 888777765 5789999988765543
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.05 E-value=26 Score=34.90 Aligned_cols=69 Identities=13% Similarity=0.207 Sum_probs=43.2
Q ss_pred EEecCCCcEEEEEEccC------CCCEEEEEeCCCeEEEEeCCCC-eEE---E-ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 423 RVFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRC-QVV---D-YTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 423 ~~~~h~~~V~~v~fsp~------d~~~l~sgs~Dg~V~IWdl~~~-~~~---~-~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
..+.+...++.+.|-.. .+.+|++.-..+.|....+... ++. . +......+..|++.|||.+.++...+
T Consensus 247 ~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 247 FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred eeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence 34445567788888641 4456766666778888888744 332 2 23455589999999999988876543
No 406
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.42 E-value=12 Score=40.84 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=49.7
Q ss_pred CCEeEEEEe--CCC-eEEEEeCCCeEEEEECCCC--cEE--EEecCCCcEEEEEEccCC--CC---EEEEEeCCCeEEEE
Q 011126 389 SEVLDLSWS--KNG-FLLSSSADKTVRLWQVGID--RCL--RVFSHNNYVTSVAFNPVD--DN---YFISGSIDGKVRIW 456 (493)
Q Consensus 389 ~~V~~l~~s--p~g-~l~sgs~Dg~V~lWd~~~~--~~~--~~~~h~~~V~~v~fsp~d--~~---~l~sgs~Dg~V~IW 456 (493)
..++.|+++ ... +||.++....|.||-.... +.. ....+...|.+|+|-+.+ +. +|++++..|.+.+|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 467888887 544 7788888888888765431 111 123367789999998732 22 78889999999998
Q ss_pred eC
Q 011126 457 EV 458 (493)
Q Consensus 457 dl 458 (493)
++
T Consensus 244 ~I 245 (717)
T PF08728_consen 244 KI 245 (717)
T ss_pred EE
Confidence 88
No 407
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.40 E-value=37 Score=35.85 Aligned_cols=56 Identities=5% Similarity=0.147 Sum_probs=38.1
Q ss_pred eEEEEECCCCcEEEEecCCC-------cEEEEEEc---cCCCC---EEEEEeCCCeEEEEeCCCCeEEE
Q 011126 410 TVRLWQVGIDRCLRVFSHNN-------YVTSVAFN---PVDDN---YFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~~~h~~-------~V~~v~fs---p~d~~---~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
.|.-.|+.+++.+-.+.... ......+. +.++. +++.++.+|.+...|..+++++.
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 78899999999988775211 11111111 11333 67888899999999999999874
No 408
>PHA02713 hypothetical protein; Provisional
Probab=88.18 E-value=32 Score=37.01 Aligned_cols=61 Identities=3% Similarity=0.041 Sum_probs=38.1
Q ss_pred eEEEEeCC------CeEEEEECCC-CcEE--EEecC-CCcEEEEEEccCCCCEEEEEeCCC--eEEEEeCCCCeEE
Q 011126 401 FLLSSSAD------KTVRLWQVGI-DRCL--RVFSH-NNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQVV 464 (493)
Q Consensus 401 ~l~sgs~D------g~V~lWd~~~-~~~~--~~~~h-~~~V~~v~fsp~d~~~l~sgs~Dg--~V~IWdl~~~~~~ 464 (493)
+.+.|+.+ ..|..||..+ .+-. ..+.. ......+.+ ++.+.++|+.|| .+..||+.+.+..
T Consensus 466 IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 466 IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCccccccc
Confidence 55556543 2467899887 4433 22222 222233333 789999999998 7888888887655
No 409
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.95 E-value=35 Score=35.11 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=42.6
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
++..=+.||++.+++-+.......+..---...+.+.| .-+.|++++.+..|.-|..
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecH
Confidence 78888999999999977655545554333344567888 7778888888888888865
No 410
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=87.86 E-value=33 Score=34.69 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=40.7
Q ss_pred eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC---CCe-EEEEeCC--CCeEEEecCC--CCCeEEEEEccC
Q 011126 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGK-VRIWEVR--RCQVVDYTDI--REIVSAVCYCPD 481 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~-V~IWdl~--~~~~~~~~~~--~~~I~sv~~spd 481 (493)
.|.--|+.+++....+.-...+..+.|+|.++.+|+-|-. +.. -|||-++ .........+ ...+.-=-|.||
T Consensus 169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~D 248 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPD 248 (386)
T ss_dssp EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TT
T ss_pred eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCC
Confidence 4556688888888888888899999999977777777654 221 2556544 3333222222 222333346666
Q ss_pred CCEEE
Q 011126 482 GKVRQ 486 (493)
Q Consensus 482 G~~l~ 486 (493)
|..|.
T Consensus 249 G~~i~ 253 (386)
T PF14583_consen 249 GSTIW 253 (386)
T ss_dssp SS-EE
T ss_pred CCEEE
Confidence 65543
No 411
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=25 Score=38.23 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=64.1
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
...+..+..||+. +|+--...|.|.+-++...+++..+. ...+...++|.- +. -++.+.+..+.+.......+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg-nd--aVvl~~e~~l~lvgp~gd~V~ 292 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG-ND--AVVLSWEVNLMLVGPPGDSVQ 292 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec-CC--ceEEEEeeeEEEEcCCCCccc
Confidence 4567888999988 88888999999999888888877776 334444788876 33 333445555666655444444
Q ss_pred EecCCCCCeEEEEEccCCCEEEEee
Q 011126 465 DYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+.++.. + +.--+||-.+++.+
T Consensus 293 f~yd~t~-~--l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 293 FYYDETA-I--LSAEVDGVRIITST 314 (829)
T ss_pred cccCCCc-e--eeeccCeeEEeccc
Confidence 4444433 2 66677887777654
No 412
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=87.45 E-value=44 Score=35.68 Aligned_cols=78 Identities=10% Similarity=0.151 Sum_probs=48.2
Q ss_pred CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEE--EEEccCCCEEE
Q 011126 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA--VCYCPDGKVRQ 486 (493)
Q Consensus 409 g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~s--v~~spdG~~l~ 486 (493)
+.|.=+|+.+++.+-.+....+...-.+.- .+.+++.++.||.++.+|.++++++........+.+ +.|.-+|+..+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv 519 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYV 519 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEE
Confidence 457778888888777665332211111111 456777788899999999999998853333333322 34556886444
Q ss_pred E
Q 011126 487 N 487 (493)
Q Consensus 487 s 487 (493)
+
T Consensus 520 ~ 520 (527)
T TIGR03075 520 A 520 (527)
T ss_pred E
Confidence 3
No 413
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.02 E-value=6.7 Score=40.60 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=26.1
Q ss_pred CEeEEEEeCCC----eEEEEeCCCeEEEEECCCCcEE
Q 011126 390 EVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCL 422 (493)
Q Consensus 390 ~V~~l~~sp~g----~l~sgs~Dg~V~lWd~~~~~~~ 422 (493)
.+..++|+|+. .|+.-+.|.+|||||+...+.+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 46678999975 7888888999999998754433
No 414
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.77 E-value=13 Score=36.93 Aligned_cols=100 Identities=13% Similarity=0.196 Sum_probs=56.1
Q ss_pred CEeEEEEeCCCeEEEEeCCCeEEEEECCCCcE---EEEec-----CCCcEEEEEEccC---CCCEEEEEeCC--------
Q 011126 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRVFS-----HNNYVTSVAFNPV---DDNYFISGSID-------- 450 (493)
Q Consensus 390 ~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~---~~~~~-----h~~~V~~v~fsp~---d~~~l~sgs~D-------- 450 (493)
..+.|+|.|+|.++.+...|.|++++ ..+.. +..+. .......++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 45789999999556667799999999 33332 22221 3457899999992 23444444421
Q ss_pred CeEEEEeCCCC-------eEE--EecC---CCCCeEEEEEccCCCEEEEeec
Q 011126 451 GKVRIWEVRRC-------QVV--DYTD---IREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 451 g~V~IWdl~~~-------~~~--~~~~---~~~~I~sv~~spdG~~l~s~s~ 490 (493)
..|.-|.+... +.+ .... ....-..|.|.|||.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444333 111 1222 3345677999999966655553
No 415
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.75 E-value=41 Score=34.57 Aligned_cols=83 Identities=12% Similarity=0.242 Sum_probs=44.0
Q ss_pred CCCeEEEEECCCCcEEEEecCC---CcEEEEEEc--cCCCCEEEEEeCCCeEEEEeC-CCCe-----EEEecC-------
Q 011126 407 ADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFN--PVDDNYFISGSIDGKVRIWEV-RRCQ-----VVDYTD------- 468 (493)
Q Consensus 407 ~Dg~V~lWd~~~~~~~~~~~h~---~~V~~v~fs--p~d~~~l~sgs~Dg~V~IWdl-~~~~-----~~~~~~------- 468 (493)
...++.+||+.+.+.++++... ..+.-|.|. |....-|+.+-...+|..|-- ..++ ++....
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 4578999999999999999743 345566664 422223555555666655544 4442 332211
Q ss_pred ---C-------CCCeEEEEEccCCCEEEEee
Q 011126 469 ---I-------REIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 469 ---~-------~~~I~sv~~spdG~~l~s~s 489 (493)
. ..-|+.|..|.|.++|.+++
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~ 330 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSN 330 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEE
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEc
Confidence 1 34589999999999999875
No 416
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.89 E-value=3.4 Score=44.32 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=47.2
Q ss_pred cCCCeEEeeecCCeEEEEECCCcc---cccc--------------ccccce--eeecccCCEEEEEEcc----CCCEEEE
Q 011126 245 PGDHELTLGQRMRRVRVHPVKKQS---RELS--------------SLYTGQ--EFLAHEGSILTMKFSL----DGQYLAS 301 (493)
Q Consensus 245 p~g~~lasgs~dg~V~vwd~~~~~---~~~~--------------~~~~~~--~l~~H~~~I~~l~fsp----dg~~Las 301 (493)
++...++.+..||.+......... .... .+.... .-..-.+.+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466778888888888877765411 1100 000000 0001123456666666 6779999
Q ss_pred EECCCcEEEEecCCCeeeeeeecc
Q 011126 302 GGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 302 gs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
.+.|+++|+||+.+++++......
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEETT
T ss_pred EeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999997776554
No 417
>PHA03098 kelch-like protein; Provisional
Probab=85.83 E-value=53 Score=35.00 Aligned_cols=64 Identities=6% Similarity=0.223 Sum_probs=37.3
Q ss_pred eEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEEEecCCCCCeEEE
Q 011126 410 TVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIREIVSAV 476 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~~~~~~~~~I~sv 476 (493)
.+.+||..+.+-...-. .. .....+.+ ++.+++.|+.+ ..|.+||+.+.+.......+..+.++
T Consensus 457 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 457 IVESYNPVTNKWTELSSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred eEEEecCCCCceeeCCCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence 38889988765433221 11 11122222 56778888765 47899999988766555544444444
No 418
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.34 E-value=30 Score=34.32 Aligned_cols=184 Identities=13% Similarity=0.145 Sum_probs=87.9
Q ss_pred ecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEE-EEEEccCCCEEEEEECCCcEEEEe
Q 011126 235 IDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL-TMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 235 ~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~-~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
.+...|.-.-|.+ .-+.+-+.||++.-..+....++... ....|..-..++. .-.+...+..++--+..|.|+--|
T Consensus 134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~--~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d 211 (342)
T PF06433_consen 134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK--STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSAD 211 (342)
T ss_dssp EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE--EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEE
T ss_pred ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe--eccccCCCCcccccccceECCCCeEEEEecCCEEEEEe
Confidence 3444453333333 46778888999988888754443321 1112222223332 334444444455568889888888
Q ss_pred cCCCeee--eeeeccCCCCceEEEeeCCCCceeeeeccCcccccee-----eeecCCCceEEEcCCCceeecccceEEEe
Q 011126 313 VIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK-----SLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 313 l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
+...... ..+.........-.|.+.+. +++.++...+.+.... ...+.....+.+++.+.. +.+..+.
T Consensus 212 lsg~~~~~~~~~~~~t~~e~~~~WrPGG~-Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~----krv~Ri~ 286 (342)
T PF06433_consen 212 LSGDSAKFGKPWSLLTDAEKADGWRPGGW-QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH----KRVARIP 286 (342)
T ss_dssp ETTSSEEEEEEEESS-HHHHHTTEEE-SS-S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----EEEEEEE
T ss_pred ccCCcccccCcccccCccccccCcCCcce-eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----eEEEEEe
Confidence 8655422 12211110000012222221 1222222222111111 012223334555555432 2233333
Q ss_pred cCCCCEeEEEEeCCC--eEEEE-eCCCeEEEEECCCCcEEEEec
Q 011126 386 GHSSEVLDLSWSKNG--FLLSS-SADKTVRLWQVGIDRCLRVFS 426 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g--~l~sg-s~Dg~V~lWd~~~~~~~~~~~ 426 (493)
. ..++.+|+.+.+. +|++. ..++.|.+||..+++.++.+.
T Consensus 287 l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 287 L-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp E-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred C-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 2357799999987 66554 468999999999999998886
No 419
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.98 E-value=8 Score=34.49 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=25.7
Q ss_pred CCEeEEEEeCCC-------eEEEEeCCCeEEEEECCC
Q 011126 389 SEVLDLSWSKNG-------FLLSSSADKTVRLWQVGI 418 (493)
Q Consensus 389 ~~V~~l~~sp~g-------~l~sgs~Dg~V~lWd~~~ 418 (493)
..|..++|||.| +|+..+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 789999999999998654
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.28 E-value=0.12 Score=52.38 Aligned_cols=139 Identities=21% Similarity=0.299 Sum_probs=95.2
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCCcEEEEecCCCeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERL 319 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~~~ 319 (493)
..|.|.+..++.++.+..|..||-.+...... .-++....|+|..+|..++ .+-..+.+.+||+.+....
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~---------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILEL---------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceeccc---------CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 46778888899999999999998654332111 1345667889988887554 4566789999998654310
Q ss_pred eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
.+... ..|.... +.|++.
T Consensus 111 -qLE~g-----------------------------------------------------------g~~s~sl--l~wsKg 128 (615)
T KOG2247|consen 111 -QLESG-----------------------------------------------------------GTSSKSL--LAWSKG 128 (615)
T ss_pred -HHhcc-----------------------------------------------------------CcchHHH--HhhccC
Confidence 00000 0012221 678887
Q ss_pred C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126 400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452 (493)
Q Consensus 400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (493)
. .++.+...+.+.|++..+.+.+...+ |...+++++|.+ .++.+.++.|..
T Consensus 129 ~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~ 181 (615)
T KOG2247|consen 129 TPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNT 181 (615)
T ss_pred CccccccccccceEEEeccchhhhhhhcccccceeEEEecc--cceeeecCcHHH
Confidence 7 77778888999999999888877777 999999999998 445566555543
No 421
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.25 E-value=1.9 Score=48.32 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=70.2
Q ss_pred CEeEEEEeCCC---eEEEEeCCCeEEEEECCCCc--------EEEEe----cCCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126 390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGIDR--------CLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (493)
Q Consensus 390 ~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~~~--------~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (493)
+|..+...+++ .++..+.+-.|..||++.-. +++.- .....+.++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44555555665 33444456678999987432 12111 14456788999995566677888899999
Q ss_pred EEeCCCCeE-EEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 455 IWEVRRCQV-VDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 455 IWdl~~~~~-~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+..+.-... +.........++++|+|-|+.+++|-.++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnG 220 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNG 220 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCC
Confidence 998864433 33446677899999999999999986554
No 422
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=83.96 E-value=52 Score=35.53 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=40.2
Q ss_pred eEEEEeCCC-----eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC-----eEEEEeCCCCeEEE
Q 011126 401 FLLSSSADK-----TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVD 465 (493)
Q Consensus 401 ~l~sgs~Dg-----~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg-----~V~IWdl~~~~~~~ 465 (493)
+++.|+.|+ +|..||..+.+....-.-......+.....++.+.+.|+.|| +|..||..+.+...
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceee
Confidence 677777665 377788887765544322222222222222678889999886 57888887766553
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.74 E-value=5.6 Score=41.03 Aligned_cols=51 Identities=12% Similarity=0.258 Sum_probs=41.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126 440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 440 d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
...|+|.++..|-||+||--..... .+.+....|..|..+.+|+++++.+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 4569999999999999997554433 46778889999999999999887653
No 424
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=13 Score=37.96 Aligned_cols=63 Identities=24% Similarity=0.271 Sum_probs=43.2
Q ss_pred EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 250 lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
++.+...|.+.=|-++.........+ -....++|.+|+|++|.+.||.--.|++|.+.+....
T Consensus 36 qlfavrSggatgvvvkgpndDVpiSf----dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 36 QLFAVRSGGATGVVVKGPNDDVPISF----DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred eEEEEecCCeeEEEEeCCCCCCCcee----eecCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 33344555666676665443322211 1235679999999999999999999999999987443
No 425
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.49 E-value=51 Score=32.18 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=51.5
Q ss_pred EEeCCCeEEEEECCCCcEEEEecC---CCcEEEEEEccC-----CCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCC----
Q 011126 404 SSSADKTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPV-----DDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR---- 470 (493)
Q Consensus 404 sgs~Dg~V~lWd~~~~~~~~~~~h---~~~V~~v~fsp~-----d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~---- 470 (493)
.+..-|.|-++|+. ++.++.+.+ -+..+.|+..|. .+.+|+---.||+|..+|..+++.+. +.+..
T Consensus 217 ~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi 295 (336)
T TIGR03118 217 AGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV 295 (336)
T ss_pred cCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE
Confidence 34445789999975 667776753 345567777652 56677766679999999999887663 33222
Q ss_pred --CCeEEEEEcc
Q 011126 471 --EIVSAVCYCP 480 (493)
Q Consensus 471 --~~I~sv~~sp 480 (493)
..++.|.|..
T Consensus 296 ~i~GLWgL~fGn 307 (336)
T TIGR03118 296 KVDGLWSLTFGN 307 (336)
T ss_pred EecCeEEeeeCC
Confidence 3468888865
No 426
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=82.48 E-value=89 Score=35.00 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=44.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec----CCC----------------CCeEEEEEccCCCEEE
Q 011126 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DIR----------------EIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~----~~~----------------~~I~sv~~spdG~~l~ 486 (493)
....|.+|+... -+.+++..-.||+|.++|..+-+.+... ... ..+.-++|||.+-.++
T Consensus 258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 446788888777 7788999999999999999877554322 111 1234578999988777
Q ss_pred Eeec
Q 011126 487 NSAC 490 (493)
Q Consensus 487 s~s~ 490 (493)
.-..
T Consensus 337 ~~~~ 340 (753)
T PF11635_consen 337 QIDE 340 (753)
T ss_pred EEec
Confidence 6543
No 427
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=82.17 E-value=95 Score=35.09 Aligned_cols=95 Identities=9% Similarity=0.160 Sum_probs=60.9
Q ss_pred EeEEEEeCC-C-eEEEEe----------CCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126 391 VLDLSWSKN-G-FLLSSS----------ADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (493)
Q Consensus 391 V~~l~~sp~-g-~l~sgs----------~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I 455 (493)
|.+..|..+ + +++.|. ..|.|.|+.+.....+.... -.+.|.++..- ++++|| +....|++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLA--GINQSVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEE
Confidence 334447666 4 666664 24778888877644444332 45566665543 566665 46788999
Q ss_pred EeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEee
Q 011126 456 WEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 456 Wdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
|++.+.+.+ .--.+..++.++...-.|..+++|-
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence 999988554 3455666777777777777777663
No 428
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.13 E-value=13 Score=38.05 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=53.0
Q ss_pred EEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCC----------------CC
Q 011126 382 HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVD----------------DN 442 (493)
Q Consensus 382 ~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d----------------~~ 442 (493)
..+......+.+|+.+|++ +.++...=|.|.|+|+.++..++.++ -...+.-+...... ..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 3444556678999999999 66665566999999999998888775 11111111111101 11
Q ss_pred -EEEEEeCCCeEEEEeCCCCeEE
Q 011126 443 -YFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 443 -~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
+++-.-.-|.|.||.++.+..+
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEE
Confidence 2334556788999999877655
No 429
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.04 E-value=9.3 Score=39.16 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=57.9
Q ss_pred EEEEeCCC-eEEEEeCCCeEEE---EECCC-C----cEEEEe----cCC--CcEEEEEEccC----------CCCEEEEE
Q 011126 393 DLSWSKNG-FLLSSSADKTVRL---WQVGI-D----RCLRVF----SHN--NYVTSVAFNPV----------DDNYFISG 447 (493)
Q Consensus 393 ~l~~sp~g-~l~sgs~Dg~V~l---Wd~~~-~----~~~~~~----~h~--~~V~~v~fsp~----------d~~~l~sg 447 (493)
.++.+|++ +|+.+..++.+.+ |+... + .....+ .+. ..|+++.|-|- |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 46778888 7777777776665 64411 1 111111 233 58888888663 45789999
Q ss_pred eCCCeEEEEeCCCCeEEEecCCCCCeEEEEEcc
Q 011126 448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (493)
Q Consensus 448 s~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~sp 480 (493)
..+|.|++|......+....-|..+|..|....
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 999999999885444445556778888887654
No 430
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=80.56 E-value=61 Score=31.81 Aligned_cols=100 Identities=10% Similarity=0.146 Sum_probs=55.1
Q ss_pred CCCCEeEEEEeCCCeEEEEeCCCeEEEEEC-CCCcEEEE----ecCC-CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRV----FSHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 387 h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~-~~~~~~~~----~~h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
-...|..|.|.|++.|......+.|+.=+. ........ +... -.+..++|.+ +..+.|+|+ .|.+ +.....
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~Dg 261 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDG 261 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESST
T ss_pred ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCC
Confidence 356789999999994433458888888772 21111111 1122 3488999998 777777665 4433 334455
Q ss_pred CeEE-E---ecCCCCCeEEEEEccCCCEEEEee
Q 011126 461 CQVV-D---YTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 461 ~~~~-~---~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
++-- + .......++.|.|.++.+.++.|.
T Consensus 262 GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 262 GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp TSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 5422 1 234566789999998888888764
No 431
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.22 E-value=20 Score=41.39 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=51.0
Q ss_pred CCCCEeEEEEeCCCeEEEEeCCCeEEEEECC----C----CcE-----------------EEEe-cCCCcEEEEEEccCC
Q 011126 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG----I----DRC-----------------LRVF-SHNNYVTSVAFNPVD 440 (493)
Q Consensus 387 h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~----~----~~~-----------------~~~~-~h~~~V~~v~fsp~d 440 (493)
....|+|+....+|.+.-++.|| .||.+. . .+| +..+ .+.++|..|.... .
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-S 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-c
Confidence 35678899977888666666677 566542 1 111 1122 3677999999987 7
Q ss_pred CCEEEEEeCCCeEEEEeCCC
Q 011126 441 DNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 441 ~~~l~sgs~Dg~V~IWdl~~ 460 (493)
-+++.+-+..|+|++||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 78899999999999999975
No 432
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.15 E-value=29 Score=32.46 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=65.6
Q ss_pred cccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeec---ccC-CEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA---HEG-SILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 238 ~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~---H~~-~I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
.+.++|+.+.+.+ .+-+.+-.|.-||+.-....++.....-.+.. ... .--.++...+|.+.+++-.-++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 3447787776654 44567778888886544433332221111111 011 112344456788888888889999999
Q ss_pred cCCCeeeeeeeccCCCCceEEEeeCCCC
Q 011126 313 VIEHERLDGFDVQDTDPSCLYFTINHLS 340 (493)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (493)
..+|+.+.+++.+...+++++|--....
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d 267 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLD 267 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence 9999999999999888887777544433
No 433
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.02 E-value=0.34 Score=49.28 Aligned_cols=97 Identities=13% Similarity=0.291 Sum_probs=71.4
Q ss_pred CCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEE-e--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRV-F--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 388 ~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~-~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
.+...+++|..++ .++.+-..+.+.|||+.+...... + .|.... +.|++ ....++.|-..|.+.|++..+.+
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchh
Confidence 3445677888877 566677789999999976433221 1 133333 78888 77888888899999999999877
Q ss_pred EEE-ecCCCCCeEEEEEccCCCEEEE
Q 011126 463 VVD-YTDIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 463 ~~~-~~~~~~~I~sv~~spdG~~l~s 487 (493)
.+- ...|...++.+++.+.+..+..
T Consensus 151 ~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 151 RIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred hhhhhcccccceeEEEecccceeeec
Confidence 664 4558999999999999876644
No 434
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=78.33 E-value=11 Score=34.67 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=35.3
Q ss_pred CEEEEEeCCCeEEEEeCC--CCeEEEecCCCCCeEEEEEccCCCEEEEe
Q 011126 442 NYFISGSIDGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 442 ~~l~sgs~Dg~V~IWdl~--~~~~~~~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
+.|..+....+|.+|++. ..++......-+.|..+.|+..|.||++-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence 444343667789999998 34555555555899999999999999974
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=77.73 E-value=56 Score=34.10 Aligned_cols=152 Identities=11% Similarity=0.176 Sum_probs=83.6
Q ss_pred cCCCEEE-EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC
Q 011126 294 LDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (493)
Q Consensus 294 pdg~~La-sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 372 (493)
.+..+|+ .|+.-..++--|+..|+.+..+..+... .+.+.+.... ........+.+-++..+.-++++
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf---------~qmt~eqtlvGlS~~svFrIDPR 545 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKF---------QQMTDEQTLVGLSDYSVFRIDPR 545 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhH---------HhcCccceEEeecccceEEeccc
Confidence 3455444 4555667888888889888888776554 2333222211 01111122333334444444444
Q ss_pred ceeecccceEEEe--cCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC
Q 011126 373 VFRLLEKPLHEFQ--GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 373 ~~~~~~~~~~~~~--~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
+-.-. -.+..++ .......+..-..+|+++.++..|-||+||--..+....+. .+..|..|..+. +|.++++.+.
T Consensus 546 ~~gNK-i~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-~Gk~ilaTCk 623 (776)
T COG5167 546 ARGNK-IKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-NGKHILATCK 623 (776)
T ss_pred ccCCc-eeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeec-CCcEEEEeec
Confidence 32200 0011111 11223334444456799999999999999954333333332 667788899988 8888776654
Q ss_pred CCeEEEEeCC
Q 011126 450 DGKVRIWEVR 459 (493)
Q Consensus 450 Dg~V~IWdl~ 459 (493)
..+-+.|++
T Consensus 624 -~yllL~d~~ 632 (776)
T COG5167 624 -NYLLLTDVP 632 (776)
T ss_pred -ceEEEEecc
Confidence 467777765
No 436
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.83 E-value=34 Score=33.12 Aligned_cols=103 Identities=11% Similarity=0.145 Sum_probs=71.0
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
.|-...|.+|+|+|+. .|++......-.||=...|..+.++. .-...-.|.+.. +++++++-=.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3444559999999998 66666666666677777889998886 223345577776 7777777777888888877644
Q ss_pred -eEE-------E--ecCC-CCCeEEEEEccCCCEEEEe
Q 011126 462 -QVV-------D--YTDI-REIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 462 -~~~-------~--~~~~-~~~I~sv~~spdG~~l~s~ 488 (493)
.++ . ...+ +...-.++|.|....|.++
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a 198 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA 198 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE
Confidence 211 1 1122 5567889999988777654
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=76.65 E-value=40 Score=33.61 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=58.5
Q ss_pred CCCEeEEEEeCCCeEEEEeCCCeEEE-EECCCCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 388 SSEVLDLSWSKNGFLLSSSADKTVRL-WQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 388 ~~~V~~l~~sp~g~l~sgs~Dg~V~l-Wd~~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
...+.++.+.|++.++..+..|.+.. +|-. ++.-... .....++++.+.| ++++++.| ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688899999884444444554442 2222 2211112 2456789999999 88877665 5676654334444322
Q ss_pred E---ec--CCCCCeEEEEEccCCCEEEEee
Q 011126 465 D---YT--DIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~---~~--~~~~~I~sv~~spdG~~l~s~s 489 (493)
. .. .....+.++.+.|++..++++.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 1 11 1124578899999988777654
No 438
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=75.16 E-value=1.5e+02 Score=33.55 Aligned_cols=104 Identities=10% Similarity=-0.025 Sum_probs=62.4
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccC--CCC---EEEEEeCCCeEEEE-eCC
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV--DDN---YFISGSIDGKVRIW-EVR 459 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~--d~~---~l~sgs~Dg~V~IW-dl~ 459 (493)
+.++....+-+. .++.++.++.+...++..+......+ ....|.|+.++|. ..+ +++.|.++..+.+- -+.
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 344444444444 66666666777777776655322222 4678999999984 333 78888887665444 344
Q ss_pred CCeEEE-----ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 460 RCQVVD-----YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 460 ~~~~~~-----~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+...+. ....+..|.-.++--|+.+|+++..|+
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG 605 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDG 605 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCc
Confidence 444332 122344556667777788888887664
No 439
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=75.12 E-value=87 Score=30.71 Aligned_cols=104 Identities=15% Similarity=0.250 Sum_probs=60.9
Q ss_pred cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC-cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCe
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQ 462 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~ 462 (493)
.-.+.+..+..+++| +++.+..-....-||-... -..+.......|..|.|.| ++.+.+.+ ..|.|++=+.. ...
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCcc
Confidence 345778889999999 7777766666678886533 2333333678999999999 87776654 88999988822 222
Q ss_pred EEE-----ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 463 VVD-----YTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 463 ~~~-----~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
... .......+..++|.+++...++|+..
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 211 11223348999999999999888753
No 440
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=74.96 E-value=78 Score=30.07 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=80.2
Q ss_pred ccccceeccCCCeEEeee---cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe-
Q 011126 237 RHGSATLKPGDHELTLGQ---RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK- 312 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs---~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd- 312 (493)
...+.++++++..+|.-. ....+.++......... +.+ ..+..-.|++++...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--------~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--------LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--------ccC--CccccccccCCCCEEEEEcCCCceEEEEe
Confidence 344589999999887655 34456666544322211 122 2677789999988777766666777774
Q ss_pred cCCCee-eeeeeccCC--CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 313 VIEHER-LDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 313 l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
..++.. ...+..... .+..+.+++++....+..............+....++ .......++........
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g--------~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG--------VPRRLTGPRRVAPPLLS 166 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC--------CcceeccceEecccccC
Confidence 222221 112222211 3455566666554444433222222222222212221 00111123333334467
Q ss_pred CEeEEEEeCCC-eE-EEEeCCCeEEE
Q 011126 390 EVLDLSWSKNG-FL-LSSSADKTVRL 413 (493)
Q Consensus 390 ~V~~l~~sp~g-~l-~sgs~Dg~V~l 413 (493)
.+++++|.+++ ++ ++...+..+..
T Consensus 167 ~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred cceeeeecCCCEEEEEeCCCCCceeE
Confidence 89999999998 33 33344443433
No 441
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.38 E-value=13 Score=23.77 Aligned_cols=39 Identities=18% Similarity=0.363 Sum_probs=27.0
Q ss_pred CCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEE
Q 011126 398 KNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAF 436 (493)
Q Consensus 398 p~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~f 436 (493)
|++ ++++.-.+++|.++|..+++.+..+.-......+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 445 445555789999999999888887765444445554
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.19 E-value=67 Score=33.07 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=69.4
Q ss_pred CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-
Q 011126 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR- 459 (493)
Q Consensus 387 h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~- 459 (493)
..++|.+|.|++|+ .||.--.+++|.+.+....+...... .+..|....|.. . .-+|.-+..| +.+|-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEch
Confidence 46699999999999 88888999999999985444433332 334588899986 3 4455555444 5666543
Q ss_pred -CCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 460 -RCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 460 -~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
..++.-...++..|+--.|.|+-+.++.++.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 2233335566777888899999887665543
No 443
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=73.45 E-value=12 Score=23.92 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=25.9
Q ss_pred CCCEEEE-EeCCCeEEEEeCCCCeEEEecCCCCCeEEEEE
Q 011126 440 DDNYFIS-GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478 (493)
Q Consensus 440 d~~~l~s-gs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~ 478 (493)
++++|++ .-.+++|.++|+.+++.+...........++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5565554 44688999999999888754444444555555
No 444
>PF15477 SMAP: Small acidic protein family
Probab=71.82 E-value=2.6 Score=31.34 Aligned_cols=13 Identities=62% Similarity=1.050 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhc
Q 011126 61 VNERRSKFLKLMG 73 (493)
Q Consensus 61 ~~~~~~~~~~~~~ 73 (493)
=.||.+||||.||
T Consensus 10 d~~rk~KFlRLMG 22 (69)
T PF15477_consen 10 DSERKEKFLRLMG 22 (69)
T ss_pred CHHHHHHHHHHhc
Confidence 3799999999999
No 445
>PRK10115 protease 2; Provisional
Probab=70.73 E-value=85 Score=34.74 Aligned_cols=99 Identities=6% Similarity=0.001 Sum_probs=57.6
Q ss_pred CEeEEEEeCCC-eEEEE-eC----CCeEEEEECCCCcEEEE-ecCCCcEEEEEEccCCCCEEEEEeCC------CeEEEE
Q 011126 390 EVLDLSWSKNG-FLLSS-SA----DKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSID------GKVRIW 456 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sg-s~----Dg~V~lWd~~~~~~~~~-~~h~~~V~~v~fsp~d~~~l~sgs~D------g~V~IW 456 (493)
.+..+.|+|+| +|+.+ .. .-.|++-|+.++..+.. +.... ..++|.+ +++.|+-...+ ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEEE
Confidence 45678899998 55433 22 23588999988764322 22222 4699999 77755544332 368888
Q ss_pred eCCCCe--EE-EecCCCCCeE-EEEEccCCCEEEEeecC
Q 011126 457 EVRRCQ--VV-DYTDIREIVS-AVCYCPDGKVRQNSACN 491 (493)
Q Consensus 457 dl~~~~--~~-~~~~~~~~I~-sv~~spdG~~l~s~s~d 491 (493)
++.++. -. -+........ .+..+.|++++++.+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~ 243 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS 243 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC
Confidence 998772 11 1222222233 33344588887766543
No 446
>PHA03098 kelch-like protein; Provisional
Probab=70.71 E-value=1.3e+02 Score=31.97 Aligned_cols=87 Identities=11% Similarity=0.172 Sum_probs=45.8
Q ss_pred eEEEEeCC------CeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCC--------CeEEEEeCCCCeEE
Q 011126 401 FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID--------GKVRIWEVRRCQVV 464 (493)
Q Consensus 401 ~l~sgs~D------g~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D--------g~V~IWdl~~~~~~ 464 (493)
+++.|+.+ ..+..||..+.+-...-. ....-.++... ++.+++.|+.+ ..+.+||..+.+..
T Consensus 392 iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 392 IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred EEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 55556532 458889987765433221 11111122222 56677777653 23899999888765
Q ss_pred EecCCC---CCeEEEEEccCCCEEEEeecC
Q 011126 465 DYTDIR---EIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 465 ~~~~~~---~~I~sv~~spdG~~l~s~s~d 491 (493)
...... .....+. -++++++.||.+
T Consensus 470 ~~~~~~~~r~~~~~~~--~~~~iyv~GG~~ 497 (534)
T PHA03098 470 ELSSLNFPRINASLCI--FNNKIYVVGGDK 497 (534)
T ss_pred eCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence 433221 1112222 377777777653
No 447
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=70.49 E-value=1.9e+02 Score=32.54 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=62.7
Q ss_pred CCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-----EEEEe-cCC----------CcEEEEEEccCCCCEEEEEeC
Q 011126 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVF-SHN----------NYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 388 ~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-----~~~~~-~h~----------~~V~~v~fsp~d~~~l~sgs~ 449 (493)
..+..+++|+|.. .||.....|...||++.... .+... .+. +.-..|.|.+ +.+.|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~- 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN- 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-
Confidence 3467799999976 99999999999999992111 11111 111 2334788988 667777765
Q ss_pred CCeEEEEeCCCCeE---EEecCCCCCeEEEEEccC
Q 011126 450 DGKVRIWEVRRCQV---VDYTDIREIVSAVCYCPD 481 (493)
Q Consensus 450 Dg~V~IWdl~~~~~---~~~~~~~~~I~sv~~spd 481 (493)
..++.++|+.+... +........|..+.-+|+
T Consensus 223 r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 223 RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred CCceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 45689999997755 333445567888888887
No 448
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.43 E-value=64 Score=33.04 Aligned_cols=97 Identities=10% Similarity=0.117 Sum_probs=57.5
Q ss_pred EeEEEEeCCC-eEEEEeCCCeEEEEECCCCc-EEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe------
Q 011126 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ------ 462 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~-~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~------ 462 (493)
...+..++++ +++.+..-..++-||-.... ..........++.+.|.+ ++.+++++ .+|.+.+ ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 4556677888 55555444444445543221 222333556789999998 88877765 5665443 333432
Q ss_pred EEE--ecCCCCCeEEEEEccCCCEEEEeec
Q 011126 463 VVD--YTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 463 ~~~--~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
... .......++++.|.+++..+++|..
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~ 347 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGS 347 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECC
Confidence 121 1222346899999999998888754
No 449
>PHA02713 hypothetical protein; Provisional
Probab=70.33 E-value=1.1e+02 Score=32.91 Aligned_cols=78 Identities=8% Similarity=0.020 Sum_probs=41.8
Q ss_pred eEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCC------CeEEEEeCCC-CeEEEecCCC---CCeEEEE
Q 011126 410 TVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRR-CQVVDYTDIR---EIVSAVC 477 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D------g~V~IWdl~~-~~~~~~~~~~---~~I~sv~ 477 (493)
.|..||..+.+-...-. +...-.+++.. ++.+.+.|+.+ ..|..||..+ .+.......+ .....+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 47778877665432221 11111122222 57777888765 2478899997 5655332222 2222222
Q ss_pred EccCCCEEEEeecC
Q 011126 478 YCPDGKVRQNSACN 491 (493)
Q Consensus 478 ~spdG~~l~s~s~d 491 (493)
-+|++.++||.+
T Consensus 511 --~~~~iyv~Gg~~ 522 (557)
T PHA02713 511 --HDNTIMMLHCYE 522 (557)
T ss_pred --ECCEEEEEeeec
Confidence 277888888754
No 450
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=70.13 E-value=1.4e+02 Score=31.06 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=25.5
Q ss_pred ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
.-..-+.|+|.|||++|++--..|.|++++-.++
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 3456789999999987776554699999875443
No 451
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=70.07 E-value=1.4e+02 Score=31.05 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=58.4
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE--EEEec------CCCcEEEEEEccCCC------CEEEEEe-
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC--LRVFS------HNNYVTSVAFNPVDD------NYFISGS- 448 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~--~~~~~------h~~~V~~v~fsp~d~------~~l~sgs- 448 (493)
...-.....|+|.|+| +|++--..|.|++++...+.. +..+. .......|+|+| +- .+|....
T Consensus 26 a~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P-dF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 26 LSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP-DFMQEKGNPYVYISYT 104 (454)
T ss_pred ECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC-CccccCCCcEEEEEEe
Confidence 3345667899999999 444444469999998655432 11111 246678999998 43 2333321
Q ss_pred C---------CCeEEEEeCCCC-------eE-EE-ecC-CCCCeEEEEEccCCCEEEEeec
Q 011126 449 I---------DGKVRIWEVRRC-------QV-VD-YTD-IREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 449 ~---------Dg~V~IWdl~~~-------~~-~~-~~~-~~~~I~sv~~spdG~~l~s~s~ 490 (493)
. ...|.-|.+... +. +. ... ....-..|.|.|||++.++.+.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1 234544554321 11 11 110 0112456789999987665543
No 452
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=69.58 E-value=1.2e+02 Score=29.98 Aligned_cols=96 Identities=22% Similarity=0.370 Sum_probs=60.7
Q ss_pred CEeEEEEeCCC-eEEEEeCC------CeEEEEECCCCcEEEEe----------------cCCCcEEEEEEccCCCCEEEE
Q 011126 390 EVLDLSWSKNG-FLLSSSAD------KTVRLWQVGIDRCLRVF----------------SHNNYVTSVAFNPVDDNYFIS 446 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~D------g~V~lWd~~~~~~~~~~----------------~h~~~V~~v~fsp~d~~~l~s 446 (493)
..-+|++.++| ++++.-.+ ..|+.++.. ++.+..+ ..+...-+|+++| +++.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEE
Confidence 45577786777 66666666 778888866 5544433 1345678999999 9996665
Q ss_pred EeC-----CC--e-------EEEE--eCCC-CeEE-----EecC-----CCCCeEEEEEccCCCEEEE
Q 011126 447 GSI-----DG--K-------VRIW--EVRR-CQVV-----DYTD-----IREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 447 gs~-----Dg--~-------V~IW--dl~~-~~~~-----~~~~-----~~~~I~sv~~spdG~~l~s 487 (493)
+.. |+ . ++|+ |..+ ++.. .... ....|+.+.+-+++++|+.
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 543 32 1 4554 4443 2111 1221 4567999999999997764
No 453
>PRK10115 protease 2; Provisional
Probab=67.96 E-value=2e+02 Score=31.87 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=41.9
Q ss_pred cceeccCCCeEEeee-----cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC------CcE
Q 011126 240 SATLKPGDHELTLGQ-----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------GTV 308 (493)
Q Consensus 240 ~~~fsp~g~~lasgs-----~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D------g~V 308 (493)
...++|+|++|+.+. ....|++.++.++..... .+.+ . -..+.|.+|++.|+-...+ ..|
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------LLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------cccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 367899999888743 334688888864431111 1111 1 1458999999866555432 357
Q ss_pred EEEecCCC
Q 011126 309 RVWKVIEH 316 (493)
Q Consensus 309 ~iWdl~~~ 316 (493)
+.+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 77788776
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=67.74 E-value=76 Score=26.96 Aligned_cols=75 Identities=11% Similarity=0.157 Sum_probs=47.4
Q ss_pred CCCEeEEEEeC---CC---eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcc---CCCCEEEEEeCCCeEEEEeC
Q 011126 388 SSEVLDLSWSK---NG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP---VDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 388 ~~~V~~l~~sp---~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp---~d~~~l~sgs~Dg~V~IWdl 458 (493)
...|++|+-.+ +. .|+.|+ ...|..||+....-+..-...+.|++|.+-. ....+++. +.+..|.-+|.
T Consensus 47 n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~ 124 (136)
T PF14781_consen 47 NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDY 124 (136)
T ss_pred CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCC
Confidence 44566665433 22 666665 4678999998877665555667888887732 12334444 45667888887
Q ss_pred CCCeEE
Q 011126 459 RRCQVV 464 (493)
Q Consensus 459 ~~~~~~ 464 (493)
...++.
T Consensus 125 ~G~e~f 130 (136)
T PF14781_consen 125 EGNEIF 130 (136)
T ss_pred CCcEEE
Confidence 766554
No 455
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=67.72 E-value=15 Score=23.30 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=18.0
Q ss_pred ecCCCCCeEEEEEccCCCEEEEeec
Q 011126 466 YTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 466 ~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+......-....|+|||+.|+-++.
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEec
Confidence 3445567788999999999987764
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.12 E-value=55 Score=31.74 Aligned_cols=71 Identities=10% Similarity=0.170 Sum_probs=51.8
Q ss_pred CCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEe------CCCeEEEEeCCCCeEEEecC-----CCCCeEE
Q 011126 408 DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS------IDGKVRIWEVRRCQVVDYTD-----IREIVSA 475 (493)
Q Consensus 408 Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs------~Dg~V~IWdl~~~~~~~~~~-----~~~~I~s 475 (493)
-..|++||....+-...-. -.+.|+.+.|.. +.++++.|. ....+..||+.+.....+.. ..++|++
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 3469999988776554443 668899999986 677777775 35579999999887754433 4578888
Q ss_pred EEEc
Q 011126 476 VCYC 479 (493)
Q Consensus 476 v~~s 479 (493)
+.+.
T Consensus 94 ~~~~ 97 (281)
T PF12768_consen 94 LTFI 97 (281)
T ss_pred EEee
Confidence 8774
No 457
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=67.10 E-value=15 Score=28.83 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=31.8
Q ss_pred EeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 447 GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 447 gs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+..+|.+.-||..+++...+..--.-.+.|+.+||+..++++-.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 44578899999999987654444457799999999999888754
No 458
>PRK13684 Ycf48-like protein; Provisional
Probab=66.69 E-value=1.4e+02 Score=29.65 Aligned_cols=100 Identities=7% Similarity=0.020 Sum_probs=58.0
Q ss_pred CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 388 ~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
...++++.+.+++.++..+..|.+++=....+..-.... ....+..+.+.| ++.++++ +.+|.|.. ....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~-G~~G~v~~-S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAG-GGNGTLLV-SKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEE-cCCCeEEE-eCCCCC
Confidence 356778888888833344556766532233332222111 123578899998 7766554 46775553 444443
Q ss_pred EE-Ee---cCCCCCeEEEEEccCCCEEEEeec
Q 011126 463 VV-DY---TDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 463 ~~-~~---~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
-- .. .......+.+.|..+++.+++|..
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 22 21 233346888999888888887753
No 459
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=66.36 E-value=2e+02 Score=31.38 Aligned_cols=31 Identities=23% Similarity=0.517 Sum_probs=28.7
Q ss_pred cCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~ 314 (493)
.+.|..|+|.++++.++..-.+|.|.+||..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 6789999999999999999999999999993
No 460
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.45 E-value=2.2e+02 Score=31.39 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=30.6
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 428 ~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
...+..+..+| +.++|+--...|+|.+-++...+..
T Consensus 216 ~~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 216 NSSVVKISVSP-NRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CceEEEEEEcC-CcceEEEEecCCcEEEEecchhhhh
Confidence 36678899999 9999999999999999998876654
No 461
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=64.73 E-value=1.3e+02 Score=33.75 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=44.7
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEecCCCcEE-------------EEEEcc-CCCCEEEEEeC----------CCeEEEE
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT-------------SVAFNP-VDDNYFISGSI----------DGKVRIW 456 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~-------------~v~fsp-~d~~~l~sgs~----------Dg~V~IW 456 (493)
.++.++.|+.|.-.|.++++.+..|...+.|. .+.-.| ..+..++.|+. +|.|+-+
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 77788889999999999999887775443331 111122 12345666643 6899999
Q ss_pred eCCCCeEEE
Q 011126 457 EVRRCQVVD 465 (493)
Q Consensus 457 dl~~~~~~~ 465 (493)
|+++++++.
T Consensus 342 Da~TGkl~W 350 (764)
T TIGR03074 342 DVNTGALVW 350 (764)
T ss_pred ECCCCcEee
Confidence 999999883
No 462
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=64.40 E-value=45 Score=29.61 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=24.4
Q ss_pred CEEEEEEccCC------CEEEEEECCCcEEEEecC
Q 011126 286 SILTMKFSLDG------QYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 286 ~I~~l~fspdg------~~Lasgs~Dg~V~iWdl~ 314 (493)
.|..++|||-| -+||+...++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 78999999943 378889999999999865
No 463
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=63.02 E-value=44 Score=36.69 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=43.3
Q ss_pred cCCCeEEeeecCCeEEEEECCCccccccc-------------cccceeeecccCCEEEEEEc--cCCCEEEEEECCCcEE
Q 011126 245 PGDHELTLGQRMRRVRVHPVKKQSRELSS-------------LYTGQEFLAHEGSILTMKFS--LDGQYLASGGEDGTVR 309 (493)
Q Consensus 245 p~g~~lasgs~dg~V~vwd~~~~~~~~~~-------------~~~~~~l~~H~~~I~~l~fs--pdg~~Lasgs~Dg~V~ 309 (493)
-+...|+.+..||.|.+|..+.-...+.. ..+.-.+ .-...+|.++++ ...++||.++....|.
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEE
Confidence 34568889999999999976321111000 0011111 234589999998 7777888888777788
Q ss_pred EEec
Q 011126 310 VWKV 313 (493)
Q Consensus 310 iWdl 313 (493)
||-+
T Consensus 191 VFaf 194 (717)
T PF08728_consen 191 VFAF 194 (717)
T ss_pred EEEE
Confidence 8754
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=62.49 E-value=16 Score=39.03 Aligned_cols=36 Identities=31% Similarity=0.619 Sum_probs=26.5
Q ss_pred CEeEEEEeC----C-CeEEEEeCCCeEEEEECCCCcEEEEe
Q 011126 390 EVLDLSWSK----N-GFLLSSSADKTVRLWQVGIDRCLRVF 425 (493)
Q Consensus 390 ~V~~l~~sp----~-g~l~sgs~Dg~V~lWd~~~~~~~~~~ 425 (493)
.+..++++. + .+|++.+.|+++|+||+.+++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 344455544 3 39999999999999999999996654
No 465
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=62.40 E-value=1.9e+02 Score=29.64 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=60.6
Q ss_pred CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCc-----EEEEecC---CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-----CLRVFSH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 388 ~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~-----~~~~~~h---~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
...++.+.|.+++.++..+.+|.+. |....+. ....... ...++.+.|.+ ++..+++ +..|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~-G~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAA-GGSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEE-ECCCcEEEeC-C
Confidence 3457888888888444445666653 3333333 2222222 23588999987 6665555 5778777664 4
Q ss_pred CCeE-EE---ecCCCCCeEEEEEccCCCEEEEee
Q 011126 460 RCQV-VD---YTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 460 ~~~~-~~---~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.++. .. .......++.+.|.++++.+++|.
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 4443 22 234456788999999998888775
No 466
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=61.32 E-value=15 Score=39.72 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=32.3
Q ss_pred EEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 421 CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 421 ~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
|....+....+++|+-+| .++-++.+..||.|++|+.....
T Consensus 7 ~s~~~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 7 CSRDPKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ccCCccccceeeeeeecC-CCceEEEEecCCcEEEEeecccc
Confidence 333334556788999999 99999999999999999986543
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=61.17 E-value=47 Score=30.67 Aligned_cols=57 Identities=12% Similarity=0.182 Sum_probs=41.9
Q ss_pred eEEEEeCCCeEEEEeCCCeEEEEECC--CCcEEEEecCCCcEEEEEEccCCCCEEEEEeC
Q 011126 392 LDLSWSKNGFLLSSSADKTVRLWQVG--IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 392 ~~l~~sp~g~l~sgs~Dg~V~lWd~~--~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
..++-++.+.|+.+.....|.+|++. ..+.+..|..-+.|..+.++. .|+||+|-=.
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~ 79 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEE 79 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEe
Confidence 34444453444444666789999988 455677787779999999999 8999998643
No 468
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=58.50 E-value=44 Score=21.05 Aligned_cols=29 Identities=14% Similarity=0.422 Sum_probs=19.2
Q ss_pred cCCCCEeEEEEeCCC--eEEEEeCC--CeEEEE
Q 011126 386 GHSSEVLDLSWSKNG--FLLSSSAD--KTVRLW 414 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g--~l~sgs~D--g~V~lW 414 (493)
.....-...+|+|+| ++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345567788999999 55566666 666666
No 469
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=58.41 E-value=1.4e+02 Score=30.70 Aligned_cols=31 Identities=19% Similarity=0.544 Sum_probs=25.0
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
..|.++...+ ..+++++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDP-SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999 679999999999999999974
No 470
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=58.24 E-value=15 Score=24.06 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=17.5
Q ss_pred CCccccccCCCCChHHHHHHHHHH
Q 011126 48 YSQSEIWTGYPQSVNERRSKFLKL 71 (493)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~ 71 (493)
.+.|..+ ....+-+|||++||..
T Consensus 4 ~sqYK~~-~~~~~Q~eRR~~~Le~ 26 (40)
T PF11538_consen 4 LSQYKNK-GSALDQEERRREFLER 26 (40)
T ss_dssp CSCTT-T-TTSCSHHHHHHHHHHH
T ss_pred HHHhhcc-cchHhHHHHHHHHHHH
Confidence 4567777 6666899999999975
No 471
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=57.87 E-value=1.8e+02 Score=27.78 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=29.3
Q ss_pred cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
.-.|+--.-+|+...+++.-..+-++|||+. +++++.+..
T Consensus 55 DPAIwVh~t~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~ 94 (364)
T COG4247 55 DPAIWVHATNPDKSLVITTVKKAGLRVYDLS-GKQLQSVNP 94 (364)
T ss_pred CcceEeccCCcCcceEEEeeccCCeEEEecC-CCeeeecCC
Confidence 3456666678888899998888899999984 455554443
No 472
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=55.06 E-value=2.2e+02 Score=27.96 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=23.4
Q ss_pred CeEEEEeCCCCeEEEecCCC--CCeEEEEEccCCCEEEEeecC
Q 011126 451 GKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 451 g~V~IWdl~~~~~~~~~~~~--~~I~sv~~spdG~~l~s~s~d 491 (493)
..|.+||+.+.+........ .........-++++.++|+-.
T Consensus 271 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 313 (323)
T TIGR03548 271 RKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGEL 313 (323)
T ss_pred ceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccc
Confidence 35899999988765433221 222222234467777777643
No 473
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=54.47 E-value=26 Score=21.03 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=20.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 441 DNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 441 ~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
+..++.++.+|.+..+|..+++++.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 3467888899999999999988763
No 474
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=54.05 E-value=2.9e+02 Score=29.14 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=47.9
Q ss_pred eEEEEeCCCeEEEEECCCCc---EEEEecC-CCcEEEEEEccCCC-CEEEEEeC--CCeEEEEeCCCCeEEEecCCCCCe
Q 011126 401 FLLSSSADKTVRLWQVGIDR---CLRVFSH-NNYVTSVAFNPVDD-NYFISGSI--DGKVRIWEVRRCQVVDYTDIREIV 473 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~---~~~~~~h-~~~V~~v~fsp~d~-~~l~sgs~--Dg~V~IWdl~~~~~~~~~~~~~~I 473 (493)
.++.+..+|.+..-.+.... .+..+.. ....+++.+-. ++ .+|+.|+. |+.+..|....-+++.....-++|
T Consensus 224 ~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~-~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi 302 (504)
T PF10433_consen 224 RILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLK-NGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPI 302 (504)
T ss_dssp EEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEES-TT--EEEEEESSS-EEEEEEESESEEEEEEE----SE
T ss_pred EEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEc-CCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCCc
Confidence 78888899999888776543 2333434 56667777765 33 37777776 556666765555566655566789
Q ss_pred EEEEEcc
Q 011126 474 SAVCYCP 480 (493)
Q Consensus 474 ~sv~~sp 480 (493)
..++.-+
T Consensus 303 ~D~~v~~ 309 (504)
T PF10433_consen 303 VDFCVVD 309 (504)
T ss_dssp EEEEEE-
T ss_pred cceEEec
Confidence 9888853
No 475
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.07 E-value=76 Score=33.26 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=48.6
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEE---------CCCCcEE---EEec---------CCCcEEEEEEccCC--CCEEE
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQ---------VGIDRCL---RVFS---------HNNYVTSVAFNPVD--DNYFI 445 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd---------~~~~~~~---~~~~---------h~~~V~~v~fsp~d--~~~l~ 445 (493)
.|..+..++.| .++-.+.+|.+.++= ++.++.. +++. ..-.+..++|+|.. +..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 56778888888 777777777655432 1223221 1111 22346778999943 57788
Q ss_pred EEeCCCeEEEEeCCCCeEE
Q 011126 446 SGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 446 sgs~Dg~V~IWdl~~~~~~ 464 (493)
.-+.|..|||||+....-+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 8889999999999865443
No 476
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=52.23 E-value=2.5e+02 Score=29.91 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=41.0
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEecCCCcE--EEEEEcc--CCCCEEEEEe------CCCeEEEEeCCCCeEE
Q 011126 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV--TSVAFNP--VDDNYFISGS------IDGKVRIWEVRRCQVV 464 (493)
Q Consensus 400 g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V--~~v~fsp--~d~~~l~sgs------~Dg~V~IWdl~~~~~~ 464 (493)
+.++.++.|+.|.-.|..+++.+-.+.....- ..+.-.| .++ .++.+. .+|.|+-+|+.+++++
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCcee
Confidence 36667778899999999999888766521100 0111122 133 444443 2789999999999887
No 477
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=50.37 E-value=60 Score=33.34 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=39.2
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
-+++-...|++.++.....+.+-.-..-..+.-++++| .++++++- ..|+|+++.+.+..
T Consensus 330 gF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp-~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 330 GFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSP-NQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred eEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCc-ccchheee-cCCceEEEEecCCC
Confidence 45555666777766544444333323334567789999 88888874 45789999988653
No 478
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=50.32 E-value=4.1e+02 Score=29.82 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=48.1
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe----c----------------CCCcEEEEEEccCCCCEEEE
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF----S----------------HNNYVTSVAFNPVDDNYFIS 446 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~----~----------------h~~~V~~v~fsp~d~~~l~s 446 (493)
...|.+|+...-+ .++..-.||+|.++|-.+.+.+... . +-..+..++|+| .+..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence 4568888877767 8899999999999998765443332 1 112344578999 8888888
Q ss_pred EeCCCeEE
Q 011126 447 GSIDGKVR 454 (493)
Q Consensus 447 gs~Dg~V~ 454 (493)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888866
No 479
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=50.28 E-value=3.1e+02 Score=28.33 Aligned_cols=140 Identities=13% Similarity=0.220 Sum_probs=78.3
Q ss_pred ccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC---C-C-eEEEEeCCCeEEEEECCCC--c----
Q 011126 352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK---N-G-FLLSSSADKTVRLWQVGID--R---- 420 (493)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---~-g-~l~sgs~Dg~V~lWd~~~~--~---- 420 (493)
......+.++..+.+.++.+.........+..-..-..+|..|..-+ . . ..++.=.-+.+.||.+... .
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 34455667777888888877443322112222222356788887643 1 2 3334455677888877311 1
Q ss_pred ----EEEEecCC--CcEEEEEEccC---C-CCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 421 ----CLRVFSHN--NYVTSVAFNPV---D-DNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 421 ----~~~~~~h~--~~V~~v~fsp~---d-~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
....+.|. .....++.-|. . ..+|..-+.||++.+++-...........---..-++|.|.-..++++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 11122232 23333444331 2 46788899999999999876654443332333444778888877777765
Q ss_pred C
Q 011126 491 N 491 (493)
Q Consensus 491 d 491 (493)
.
T Consensus 195 s 195 (418)
T PF14727_consen 195 S 195 (418)
T ss_pred c
Confidence 3
No 480
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=49.86 E-value=26 Score=33.10 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=48.5
Q ss_pred EEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeC-C--CeEEEEeCCC----CeEEEe---cCCCCCeEEEEEcc
Q 011126 412 RLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSI-D--GKVRIWEVRR----CQVVDY---TDIREIVSAVCYCP 480 (493)
Q Consensus 412 ~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~-D--g~V~IWdl~~----~~~~~~---~~~~~~I~sv~~sp 480 (493)
.+||+.+++..... .....+.+-.+-| +|++|++|+. + ..+++++... ...... ......--++.--|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 47888876553222 1344455557788 9999999886 2 4588888755 222211 11222334455668
Q ss_pred CCCEEEEeecC
Q 011126 481 DGKVRQNSACN 491 (493)
Q Consensus 481 dG~~l~s~s~d 491 (493)
||+.|++||..
T Consensus 128 DG~vlIvGG~~ 138 (243)
T PF07250_consen 128 DGRVLIVGGSN 138 (243)
T ss_pred CCCEEEEeCcC
Confidence 99999999864
No 481
>PHA02790 Kelch-like protein; Provisional
Probab=49.62 E-value=3.3e+02 Score=28.56 Aligned_cols=85 Identities=11% Similarity=-0.034 Sum_probs=43.4
Q ss_pred eEEEEeCC---CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC-Ce
Q 011126 401 FLLSSSAD---KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-IV 473 (493)
Q Consensus 401 ~l~sgs~D---g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~-~I 473 (493)
+.+.|+.+ ..+..||..+.+-...-. .. .....+.+ ++.+.+.| |.+.+||..+.+......... ..
T Consensus 365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~ 438 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRD 438 (480)
T ss_pred EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEEC---CceEEecCCCCcEeEcCCCCCCcc
Confidence 44555543 346678876654433211 11 11112222 56677776 357889998877654332221 11
Q ss_pred EEEEEccCCCEEEEeecC
Q 011126 474 SAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 474 ~sv~~spdG~~l~s~s~d 491 (493)
..-+---+|++.++||.+
T Consensus 439 ~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 439 NPELIIVDNKLLLIGGFY 456 (480)
T ss_pred ccEEEEECCEEEEECCcC
Confidence 111223477888888753
No 482
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=47.34 E-value=3.6e+02 Score=31.06 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=32.3
Q ss_pred cCCEEEEEEccCC------CEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 284 EGSILTMKFSLDG------QYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 284 ~~~I~~l~fspdg------~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
+..|.|+++.++. ++++.|+.|+++++..+....++..+...
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 4568888988764 57999999999999999866666555433
No 483
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=46.71 E-value=38 Score=36.84 Aligned_cols=95 Identities=13% Similarity=0.201 Sum_probs=60.8
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD- 465 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~- 465 (493)
...++.+.-+|.| -++.+..||.|++|+....+..+......+-..+.|.. .| |++...|..+--|.-. |-+.+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tn-hg--l~~~tsdrr~la~~~d-gvvqqq 89 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTN-HG--LVTATSDRRALAWKED-GVVQQQ 89 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeec-cc--eEEEeccchhheeecc-Ccchhh
Confidence 4456778888988 89999999999999987766554444444455566654 34 5666678888888543 32222
Q ss_pred --ecC-CCCCeEEEEEccCCCEEE
Q 011126 466 --YTD-IREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 466 --~~~-~~~~I~sv~~spdG~~l~ 486 (493)
+.+ ......++...|..+.++
T Consensus 90 fdyndqsekefss~~cdptaqnvv 113 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQNVV 113 (1636)
T ss_pred ccccchhhhhccceecCchhhhhh
Confidence 222 122355666667665554
No 484
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=45.71 E-value=5.3e+02 Score=29.79 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=53.2
Q ss_pred EEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEE--EEeCCCCeEEEec
Q 011126 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVR--IWEVRRCQVVDYT 467 (493)
Q Consensus 394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~--IWdl~~~~~~~~~ 467 (493)
.+.+|-+ ++++ +....+++||+...+.++... ....|+.+++. +..++.|..--.|. .|+-...+++.+.
T Consensus 939 ~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFA 1014 (1205)
T ss_pred eEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEe
Confidence 3456655 4444 456789999999888877664 36788889885 45666665544444 4555566766544
Q ss_pred CC--CCCeEEEEEccCC
Q 011126 468 DI--REIVSAVCYCPDG 482 (493)
Q Consensus 468 ~~--~~~I~sv~~spdG 482 (493)
+. +..|+++.+-..+
T Consensus 1015 dD~~pR~Vt~~~~lD~~ 1031 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLDYD 1031 (1205)
T ss_pred CCCccceeeEEEEecCC
Confidence 32 3346665554444
No 485
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=45.55 E-value=4.9e+02 Score=29.29 Aligned_cols=105 Identities=14% Similarity=0.210 Sum_probs=66.6
Q ss_pred cCCCCEeEEEEe---CC--C--eEEEEeCCCeEEEEE------CCC---------CcEEEEec----CCCcEEEEEEccC
Q 011126 386 GHSSEVLDLSWS---KN--G--FLLSSSADKTVRLWQ------VGI---------DRCLRVFS----HNNYVTSVAFNPV 439 (493)
Q Consensus 386 ~h~~~V~~l~~s---p~--g--~l~sgs~Dg~V~lWd------~~~---------~~~~~~~~----h~~~V~~v~fsp~ 439 (493)
.-..+|..|+|. .. . .++..-....+.|+. +.. ..++..+. -..+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356788899887 21 1 345555556677776 111 12334443 3457788999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC------eEEEecCCC----------CCeEEEEEccCCCEEEEeec
Q 011126 440 DDNYFISGSIDGKVRIWEVRRC------QVVDYTDIR----------EIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 440 d~~~l~sgs~Dg~V~IWdl~~~------~~~~~~~~~----------~~I~sv~~spdG~~l~s~s~ 490 (493)
+...||.....|...||++..+ .+....... ..-..|+|.++-..|++...
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 8889999999999999999211 111111111 23348889888777776654
No 486
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=45.47 E-value=59 Score=19.27 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126 430 YVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (493)
Q Consensus 430 ~V~~v~fsp~d~~~l~sgs~Dg~V~IWd 457 (493)
.|.+|+..+ .+++.+..-+.+|||.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 578888865 6889998889999983
No 487
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=42.17 E-value=2.3e+02 Score=31.56 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=50.5
Q ss_pred cccceEEEecCCCCEeEEEEe----CCC---eEEEEeCCCeEE-EEECCC--------CcEEEEecCCCcEEEEEEccCC
Q 011126 377 LEKPLHEFQGHSSEVLDLSWS----KNG---FLLSSSADKTVR-LWQVGI--------DRCLRVFSHNNYVTSVAFNPVD 440 (493)
Q Consensus 377 ~~~~~~~~~~h~~~V~~l~~s----p~g---~l~sgs~Dg~V~-lWd~~~--------~~~~~~~~h~~~V~~v~fsp~d 440 (493)
...|+....+ ....+.|+.. .++ .|..|+.+|+|. +-.+.. -+.+..|.+..+|..|.+++ .
T Consensus 397 ~~~P~l~~~~-~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~-~ 474 (737)
T KOG3611|consen 397 HGRPLLVKTG-DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSS-K 474 (737)
T ss_pred CCCceEEecc-cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecc-c
Confidence 3445555555 6667777776 444 778888888753 333322 12234455778999999999 6
Q ss_pred CCEEEEEeCCCeEEE
Q 011126 441 DNYFISGSIDGKVRI 455 (493)
Q Consensus 441 ~~~l~sgs~Dg~V~I 455 (493)
...|++|+..|.++|
T Consensus 475 ~~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 475 RGSLYVGSRSGVVQV 489 (737)
T ss_pred CCeEEEEccCcEEEe
Confidence 778888888886554
No 488
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=41.44 E-value=70 Score=25.05 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=30.0
Q ss_pred EEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE
Q 011126 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 404 sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg 447 (493)
.+..+|.+.-||..+++....+..-...+.|+++| ++.+|+.+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~-d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSP-DESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-T-TSSEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcC-CCCEEEEE
Confidence 34456788899999988766666555789999999 88876654
No 489
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=41.15 E-value=2e+02 Score=27.52 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=48.2
Q ss_pred CCCCEeEEEEeC------CC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcc-C--CCCEEEEEeCCCeEEE
Q 011126 387 HSSEVLDLSWSK------NG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP-V--DDNYFISGSIDGKVRI 455 (493)
Q Consensus 387 h~~~V~~l~~sp------~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp-~--d~~~l~sgs~Dg~V~I 455 (493)
+...|+||+--+ +. .|+.|.+.+.|.|.|-.....+..+.-.+....|...- - -+..|+.++.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 456788887532 23 89999999999999999888888877544433333321 0 2334667788998876
Q ss_pred E
Q 011126 456 W 456 (493)
Q Consensus 456 W 456 (493)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 490
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=41.10 E-value=4.5e+02 Score=27.66 Aligned_cols=69 Identities=13% Similarity=0.253 Sum_probs=40.7
Q ss_pred CeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--ec----CCCCCeEEEEEcc
Q 011126 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YT----DIREIVSAVCYCP 480 (493)
Q Consensus 409 g~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--~~----~~~~~I~sv~~sp 480 (493)
..|++.+....+....+. ....|.+.+.+ +.+++.+-.++.+..+.+....... .. .....|.++...|
T Consensus 427 ~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 427 KGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 447777777776666553 45566666664 4667777778899999998776542 21 2567888888776
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=40.92 E-value=75 Score=18.60 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=13.9
Q ss_pred EEEEEEccCCCCEEEEEeCCCeEEE
Q 011126 431 VTSVAFNPVDDNYFISGSIDGKVRI 455 (493)
Q Consensus 431 V~~v~fsp~d~~~l~sgs~Dg~V~I 455 (493)
...|++++ +++++++=.....|++
T Consensus 4 P~gvav~~-~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDS-DGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEET-TSEEEEEECCCTEEEE
T ss_pred CcEEEEeC-CCCEEEEECCCCEEEE
Confidence 45566665 6666666555555554
No 492
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=39.58 E-value=61 Score=20.50 Aligned_cols=23 Identities=17% Similarity=0.214 Sum_probs=19.6
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEE
Q 011126 443 YFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 443 ~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
.+..++.||.|+-.|.++|+++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEE
Confidence 45566999999999999999884
No 493
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=39.15 E-value=3.7e+02 Score=26.06 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=42.0
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC-----C-eEEEecCC-CCCeEEEEEcc--CCCEEEEee
Q 011126 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-----C-QVVDYTDI-REIVSAVCYCP--DGKVRQNSA 489 (493)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~-----~-~~~~~~~~-~~~I~sv~~sp--dG~~l~s~s 489 (493)
.....+++++ +|.++.+--..+.|..|+..+ . +++..... -..+.++.+.+ +|.+.+.+.
T Consensus 186 ~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 186 SQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp -SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 4567788999 999999999999999999987 2 23332222 45789999999 887766553
No 494
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=36.41 E-value=5.1e+02 Score=27.20 Aligned_cols=93 Identities=16% Similarity=0.112 Sum_probs=47.9
Q ss_pred EEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCc----EEEEEEccCCCCEEEEEeC-------------CCeEEEE
Q 011126 394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY----VTSVAFNPVDDNYFISGSI-------------DGKVRIW 456 (493)
Q Consensus 394 l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~----V~~v~fsp~d~~~l~sgs~-------------Dg~V~IW 456 (493)
+...++|.|+.+.. ..++.+|+- |+.+..+..... =..+..-| +|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55668885544444 778888875 555555542221 23466778 8999988872 1236666
Q ss_pred eCCCCeEEE---ecCCC-------------------------CCeEEEEEccCCCEEEEeec
Q 011126 457 EVRRCQVVD---YTDIR-------------------------EIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 457 dl~~~~~~~---~~~~~-------------------------~~I~sv~~spdG~~l~s~s~ 490 (493)
| .+|+++. ...|- -.++++.|.|....|++++.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR 290 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSR 290 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEET
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcC
Confidence 7 7777763 11111 13899999995555555543
No 495
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=32.72 E-value=61 Score=22.85 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=16.0
Q ss_pred CeEEEEEccCCCEEEEeec
Q 011126 472 IVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 472 ~I~sv~~spdG~~l~s~s~ 490 (493)
.+.+++..|||+++++|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678999999999998864
No 496
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=32.52 E-value=77 Score=20.13 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=16.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCC
Q 011126 440 DDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 440 d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
.+..++.++.||+|+.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466888899999999999864
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=31.70 E-value=5.8e+02 Score=26.09 Aligned_cols=31 Identities=13% Similarity=0.517 Sum_probs=24.0
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGID 419 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~ 419 (493)
..|..|+..+.. .|++...++.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 448899998877 9999999999999999753
No 498
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=31.62 E-value=5.1e+02 Score=25.49 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=35.5
Q ss_pred CCCCEeEEEEeCCC-eEEEEeC-----CC---------eEEEEEC--CC-CcEEEEec----------CCCcEEEEEEcc
Q 011126 387 HSSEVLDLSWSKNG-FLLSSSA-----DK---------TVRLWQV--GI-DRCLRVFS----------HNNYVTSVAFNP 438 (493)
Q Consensus 387 h~~~V~~l~~sp~g-~l~sgs~-----Dg---------~V~lWd~--~~-~~~~~~~~----------h~~~V~~v~fsp 438 (493)
.+...-.|+++|+| .|+++.. |+ .++|+.. .+ +.....+. ....|+.+.+-|
T Consensus 145 ~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~ 224 (326)
T PF13449_consen 145 NNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP 224 (326)
T ss_pred CCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC
Confidence 35667889999988 4655532 21 1555544 43 32333332 246788899999
Q ss_pred CCCCEEEE
Q 011126 439 VDDNYFIS 446 (493)
Q Consensus 439 ~d~~~l~s 446 (493)
++++|+.
T Consensus 225 -d~~lLvL 231 (326)
T PF13449_consen 225 -DGRLLVL 231 (326)
T ss_pred -CCcEEEE
Confidence 8887763
No 499
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.46 E-value=8.2e+02 Score=27.93 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=47.6
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccc------cceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLY------TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~------~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~ 314 (493)
.++...|+.+..|+.+|.+.+|.+.........-. ....+ ++.+|..|...+.-.++++- .|+.|.++++.
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~--~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~ 96 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEF--SKKPINKLLVCASLELLLIL-SDSQIAVHKLP 96 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhh--ccchhHHHhhcchhcchhee-cCCcceeeecC
Confidence 35666788999999999999999876543322111 11111 25678777777755555443 36678888776
Q ss_pred CCee
Q 011126 315 EHER 318 (493)
Q Consensus 315 ~~~~ 318 (493)
+-+.
T Consensus 97 ~~~~ 100 (877)
T KOG2063|consen 97 ELEP 100 (877)
T ss_pred cccc
Confidence 5443
No 500
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=30.82 E-value=6.5e+02 Score=26.42 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=24.6
Q ss_pred cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (493)
Q Consensus 430 ~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~ 466 (493)
.+++|.+.|.++.+|+++=.-..|...|.+++++...
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 5899999995555555554455899999888888743
Done!