Query 011126
Match_columns 493
No_of_seqs 644 out of 3058
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 21:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 7.7E-32 2.6E-36 269.5 31.6 235 234-492 81-322 (344)
2 1vyh_C Platelet-activating fac 100.0 3.7E-32 1.3E-36 278.1 26.7 260 180-492 120-402 (410)
3 2pbi_B Guanine nucleotide-bind 100.0 2.9E-31 9.9E-36 266.2 32.1 247 227-492 56-348 (354)
4 3ow8_A WD repeat-containing pr 100.0 6.9E-32 2.3E-36 267.1 27.1 274 167-493 30-313 (321)
5 2ynn_A Coatomer subunit beta'; 100.0 3E-31 1E-35 260.1 31.2 239 229-493 7-251 (304)
6 1vyh_C Platelet-activating fac 100.0 2.9E-31 1E-35 271.5 31.0 236 229-492 102-360 (410)
7 1got_B GT-beta; complex (GTP-b 100.0 4.8E-31 1.7E-35 262.8 29.6 237 232-493 94-335 (340)
8 1got_B GT-beta; complex (GTP-b 100.0 1.6E-30 5.3E-35 259.1 33.1 236 228-492 48-292 (340)
9 3ow8_A WD repeat-containing pr 100.0 6.3E-31 2.1E-35 260.2 29.8 238 230-493 27-271 (321)
10 3frx_A Guanine nucleotide-bind 100.0 7.6E-31 2.6E-35 259.1 30.3 242 226-491 8-258 (319)
11 4g56_B MGC81050 protein; prote 100.0 9.6E-31 3.3E-35 262.7 29.4 242 231-493 90-335 (357)
12 3frx_A Guanine nucleotide-bind 100.0 1.5E-30 5.1E-35 257.0 28.5 281 167-493 15-309 (319)
13 2ynn_A Coatomer subunit beta'; 100.0 1.3E-30 4.6E-35 255.4 27.9 261 180-491 25-293 (304)
14 2pm7_B Protein transport prote 100.0 2E-30 6.9E-35 253.3 27.6 240 231-492 5-276 (297)
15 3iz6_a 40S ribosomal protein R 100.0 7.5E-31 2.6E-35 265.6 22.5 276 174-493 69-367 (380)
16 2xzm_R RACK1; ribosome, transl 100.0 7.3E-30 2.5E-34 254.5 29.2 260 226-492 12-331 (343)
17 4aow_A Guanine nucleotide-bind 100.0 2E-29 6.9E-34 248.8 30.7 256 230-493 33-329 (340)
18 1nr0_A Actin interacting prote 100.0 1.8E-29 6.3E-34 271.5 31.3 324 146-492 40-513 (611)
19 4gqb_B Methylosome protein 50; 100.0 1.5E-29 5.3E-34 252.8 25.8 249 223-493 18-281 (344)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-29 8E-34 251.2 26.7 268 180-493 28-327 (345)
21 1nr0_A Actin interacting prote 100.0 4E-29 1.4E-33 268.8 29.9 236 230-492 54-346 (611)
22 3bg1_A Protein SEC13 homolog; 100.0 6.3E-30 2.2E-34 252.1 20.7 241 231-492 9-284 (316)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.4E-29 1.2E-33 250.0 26.1 243 228-492 8-274 (345)
24 1erj_A Transcriptional repress 100.0 1.7E-28 5.7E-33 249.5 30.4 232 237-492 125-380 (393)
25 2hes_X YDR267CP; beta-propelle 100.0 5.7E-29 1.9E-33 246.8 26.3 239 234-492 57-319 (330)
26 2hes_X YDR267CP; beta-propelle 100.0 1.2E-28 4E-33 244.6 28.1 240 228-492 7-271 (330)
27 3iz6_a 40S ribosomal protein R 100.0 2.6E-29 8.9E-34 254.3 23.5 237 229-492 60-320 (380)
28 3zwl_B Eukaryotic translation 100.0 6.1E-28 2.1E-32 240.2 32.1 254 227-492 24-337 (369)
29 4g56_B MGC81050 protein; prote 100.0 6.5E-29 2.2E-33 249.4 24.7 248 221-492 28-292 (357)
30 4ery_A WD repeat-containing pr 100.0 1.4E-27 4.7E-32 234.0 31.6 236 229-492 17-259 (312)
31 2ymu_A WD-40 repeat protein; u 100.0 4E-28 1.4E-32 257.9 29.9 231 231-493 340-572 (577)
32 4ery_A WD repeat-containing pr 100.0 8.8E-28 3E-32 235.4 28.5 232 231-489 61-298 (312)
33 3dwl_C Actin-related protein 2 100.0 4E-29 1.4E-33 251.1 19.2 236 234-492 10-273 (377)
34 3jrp_A Fusion protein of prote 100.0 5.7E-28 2E-32 241.6 27.4 243 228-492 4-278 (379)
35 1gxr_A ESG1, transducin-like e 100.0 3.9E-27 1.3E-31 231.6 32.6 234 233-492 49-287 (337)
36 3dm0_A Maltose-binding peripla 100.0 8.6E-28 2.9E-32 262.1 29.7 245 226-490 373-622 (694)
37 1erj_A Transcriptional repress 100.0 9.2E-27 3.1E-31 236.6 30.7 236 233-492 62-332 (393)
38 3dm0_A Maltose-binding peripla 100.0 2.7E-27 9.1E-32 258.3 28.6 277 167-492 380-684 (694)
39 3f3f_A Nucleoporin SEH1; struc 100.0 9.6E-27 3.3E-31 228.8 28.9 245 231-493 7-329 (351)
40 2pm9_A Protein WEB1, protein t 100.0 3.6E-28 1.2E-32 246.9 18.8 304 144-492 44-405 (416)
41 1gxr_A ESG1, transducin-like e 100.0 2.5E-26 8.7E-31 225.7 31.5 232 234-492 96-328 (337)
42 4gga_A P55CDC, cell division c 100.0 5E-26 1.7E-30 233.0 33.2 247 239-493 109-387 (420)
43 2ymu_A WD-40 repeat protein; u 100.0 2.2E-26 7.4E-31 244.5 31.3 230 231-492 299-530 (577)
44 1k8k_C P40, ARP2/3 complex 41 100.0 1.7E-26 5.9E-31 230.6 28.8 236 233-491 6-264 (372)
45 4e54_B DNA damage-binding prot 100.0 1.3E-27 4.4E-32 246.1 21.0 234 230-490 114-364 (435)
46 1r5m_A SIR4-interacting protei 100.0 5.2E-26 1.8E-30 230.6 30.9 230 232-492 105-352 (425)
47 4ggc_A P55CDC, cell division c 100.0 1.3E-25 4.4E-30 219.3 32.1 246 239-492 29-306 (318)
48 3odt_A Protein DOA1; ubiquitin 100.0 6.6E-26 2.2E-30 220.6 29.4 248 228-492 11-287 (313)
49 3mmy_A MRNA export factor; mRN 100.0 3.1E-26 1E-30 227.8 27.2 254 229-492 33-337 (368)
50 1sq9_A Antiviral protein SKI8; 99.9 1.9E-26 6.6E-31 232.8 25.6 276 174-492 19-386 (397)
51 4a11_B DNA excision repair pro 99.9 1.5E-25 5E-30 226.3 31.7 245 230-493 38-357 (408)
52 2pm9_A Protein WEB1, protein t 99.9 1.9E-26 6.5E-31 234.2 24.7 237 234-492 66-328 (416)
53 3vl1_A 26S proteasome regulato 99.9 5.9E-26 2E-30 231.2 27.4 243 232-490 136-408 (420)
54 3gre_A Serine/threonine-protei 99.9 6.1E-27 2.1E-31 240.4 20.1 251 232-492 60-350 (437)
55 3v7d_B Cell division control p 99.9 2.4E-25 8.3E-30 230.2 32.1 244 230-489 116-410 (464)
56 1sq9_A Antiviral protein SKI8; 99.9 4.6E-26 1.6E-30 230.1 25.6 246 228-492 9-313 (397)
57 3dw8_B Serine/threonine-protei 99.9 1.9E-26 6.4E-31 236.7 21.6 239 236-492 94-438 (447)
58 2xyi_A Probable histone-bindin 99.9 1.3E-25 4.4E-30 230.9 27.7 246 230-492 123-401 (430)
59 4aez_A CDC20, WD repeat-contai 99.9 1.2E-25 4.2E-30 228.6 27.1 229 234-492 133-371 (401)
60 4h5i_A Guanine nucleotide-exch 99.9 5E-26 1.7E-30 229.1 23.7 224 249-493 96-335 (365)
61 3jro_A Fusion protein of prote 99.9 2.7E-26 9.3E-31 252.7 23.5 241 230-492 4-276 (753)
62 2j04_B YDR362CP, TAU91; beta p 99.9 1.4E-26 5E-31 243.7 20.3 236 244-492 170-419 (524)
63 3k26_A Polycomb protein EED; W 99.9 2.7E-26 9.2E-31 228.2 20.6 232 236-492 70-357 (366)
64 3sfz_A APAF-1, apoptotic pepti 99.9 2E-25 6.7E-30 258.5 30.9 236 231-492 611-904 (1249)
65 1r5m_A SIR4-interacting protei 99.9 1.6E-25 5.3E-30 227.1 26.6 234 231-493 145-417 (425)
66 3ei3_B DNA damage-binding prot 99.9 9.9E-26 3.4E-30 227.2 24.9 209 228-463 66-285 (383)
67 3mkq_A Coatomer beta'-subunit; 99.9 1.9E-25 6.5E-30 247.0 29.4 238 229-492 7-250 (814)
68 2aq5_A Coronin-1A; WD40 repeat 99.9 8.6E-26 2.9E-30 229.6 24.2 239 229-488 75-331 (402)
69 2pbi_B Guanine nucleotide-bind 99.9 5.9E-25 2E-29 220.1 29.8 201 277-493 57-263 (354)
70 3dw8_B Serine/threonine-protei 99.9 4.7E-26 1.6E-30 233.7 21.6 253 234-492 27-364 (447)
71 1yfq_A Cell cycle arrest prote 99.9 2.5E-25 8.6E-30 219.7 25.8 250 232-493 8-315 (342)
72 3vl1_A 26S proteasome regulato 99.9 4.5E-25 1.5E-29 224.7 28.2 228 236-492 57-313 (420)
73 3i2n_A WD repeat-containing pr 99.9 1.1E-25 3.9E-30 223.1 23.2 236 233-492 63-344 (357)
74 3ei3_B DNA damage-binding prot 99.9 7.3E-26 2.5E-30 228.1 22.0 234 233-492 116-373 (383)
75 1k8k_C P40, ARP2/3 complex 41 99.9 1.4E-25 4.7E-30 224.1 23.8 240 230-492 47-352 (372)
76 4h5i_A Guanine nucleotide-exch 99.9 1.7E-25 5.8E-30 225.2 24.2 203 237-461 135-344 (365)
77 4aez_A CDC20, WD repeat-contai 99.9 1.1E-24 3.6E-29 221.7 29.5 229 233-489 89-322 (401)
78 1pgu_A Actin interacting prote 99.9 1.5E-24 5E-29 231.4 31.4 236 233-492 16-274 (615)
79 4gq1_A NUP37; propeller, trans 99.9 2.5E-26 8.7E-31 233.5 16.7 236 240-492 94-381 (393)
80 2pm7_B Protein transport prote 99.9 2.5E-25 8.7E-30 217.0 22.7 254 174-459 12-284 (297)
81 2j04_B YDR362CP, TAU91; beta p 99.9 2.9E-25 1E-29 233.7 23.4 242 232-492 204-508 (524)
82 3i2n_A WD repeat-containing pr 99.9 5.1E-25 1.7E-29 218.4 23.1 242 232-492 15-282 (357)
83 2aq5_A Coronin-1A; WD40 repeat 99.9 1.8E-24 6.2E-29 219.8 27.3 230 240-492 39-290 (402)
84 3vu4_A KMHSV2; beta-propeller 99.9 1.6E-24 5.5E-29 217.1 26.5 250 231-492 15-327 (355)
85 3dwl_C Actin-related protein 2 99.9 8E-26 2.7E-30 227.0 16.7 207 230-459 50-280 (377)
86 2oaj_A Protein SNI1; WD40 repe 99.9 6.9E-25 2.4E-29 245.6 25.6 236 228-491 10-297 (902)
87 3mkq_A Coatomer beta'-subunit; 99.9 1.8E-24 6.3E-29 239.1 27.8 234 230-490 50-292 (814)
88 3f3f_A Nucleoporin SEH1; struc 99.9 2.5E-25 8.6E-30 218.6 18.6 219 230-464 52-341 (351)
89 2oaj_A Protein SNI1; WD40 repe 99.9 3.9E-24 1.3E-28 239.6 30.4 325 144-493 78-653 (902)
90 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.1E-23 3.6E-28 217.1 30.4 281 144-492 138-429 (445)
91 3k26_A Polycomb protein EED; W 99.9 9.8E-25 3.4E-29 216.9 20.3 237 232-492 15-309 (366)
92 2vdu_B TRNA (guanine-N(7)-)-me 99.9 6.4E-24 2.2E-28 219.3 26.8 235 236-489 5-326 (450)
93 2xzm_R RACK1; ribosome, transl 99.9 1.1E-23 3.7E-28 209.7 27.2 196 276-492 13-235 (343)
94 3v7d_B Cell division control p 99.9 2E-23 7E-28 215.7 29.9 289 144-490 141-451 (464)
95 3bg1_A Protein SEC13 homolog; 99.9 1.6E-24 5.4E-29 213.4 17.8 261 167-459 11-292 (316)
96 4e54_B DNA damage-binding prot 99.9 1.9E-24 6.4E-29 222.4 18.4 237 231-490 160-420 (435)
97 2j04_A TAU60, YPL007P, hypothe 99.9 1.5E-23 5.1E-28 217.6 23.3 232 235-492 15-289 (588)
98 3gre_A Serine/threonine-protei 99.9 6E-24 2E-28 218.0 19.7 239 233-493 109-432 (437)
99 1p22_A F-BOX/WD-repeat protein 99.9 1.5E-22 5.2E-27 208.0 30.2 218 241-492 137-356 (435)
100 4aow_A Guanine nucleotide-bind 99.9 8.6E-23 2.9E-27 201.1 27.0 209 277-489 31-275 (340)
101 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.2E-22 4E-27 209.8 27.9 230 231-488 98-372 (450)
102 1pgu_A Actin interacting prote 99.9 1.3E-22 4.3E-27 216.4 27.9 238 231-492 59-319 (615)
103 4ggc_A P55CDC, cell division c 99.9 1.5E-22 5.2E-27 197.4 26.0 210 233-461 65-316 (318)
104 2w18_A PALB2, fancn, partner a 99.9 6.4E-23 2.2E-27 200.6 22.4 181 245-493 143-349 (356)
105 3jrp_A Fusion protein of prote 99.9 2.4E-23 8.4E-28 207.8 19.5 221 230-459 50-286 (379)
106 3odt_A Protein DOA1; ubiquitin 99.9 4E-22 1.4E-26 193.7 27.1 260 144-467 38-303 (313)
107 3lrv_A PRE-mRNA-splicing facto 99.9 7.2E-23 2.5E-27 203.6 22.0 227 236-491 77-323 (343)
108 2xyi_A Probable histone-bindin 99.9 1.8E-22 6.3E-27 207.3 25.6 216 227-461 173-411 (430)
109 2ovr_B FBW7, F-BOX/WD repeat p 99.9 6.4E-22 2.2E-26 203.7 29.7 224 230-492 113-339 (445)
110 4gga_A P55CDC, cell division c 99.9 3.5E-22 1.2E-26 204.4 27.4 264 145-464 125-399 (420)
111 3sfz_A APAF-1, apoptotic pepti 99.9 5.3E-23 1.8E-27 238.1 23.9 241 230-492 877-1149(1249)
112 1p22_A F-BOX/WD-repeat protein 99.9 2E-22 6.9E-27 207.1 24.3 223 231-492 169-405 (435)
113 2j04_A TAU60, YPL007P, hypothe 99.9 8.6E-23 2.9E-27 211.9 21.1 223 235-490 85-350 (588)
114 3zwl_B Eukaryotic translation 99.9 2.7E-21 9.3E-26 192.0 27.8 215 277-492 25-281 (369)
115 3lrv_A PRE-mRNA-splicing facto 99.9 2.2E-22 7.4E-27 200.1 17.6 185 241-491 42-235 (343)
116 4a11_B DNA excision repair pro 99.9 1.1E-21 3.6E-26 197.9 21.4 210 232-465 96-370 (408)
117 3bws_A Protein LP49; two-domai 99.9 1.1E-20 3.6E-25 193.2 28.6 236 233-490 167-420 (433)
118 3bws_A Protein LP49; two-domai 99.9 4.8E-21 1.6E-25 195.8 25.7 231 237-490 124-364 (433)
119 3mmy_A MRNA export factor; mRN 99.9 1.1E-21 3.7E-26 194.8 19.8 217 231-458 82-344 (368)
120 3jro_A Fusion protein of prote 99.9 2.4E-22 8.2E-27 221.2 15.3 222 230-460 48-285 (753)
121 1l0q_A Surface layer protein; 99.9 1.2E-19 4.2E-24 182.7 32.1 223 237-489 33-262 (391)
122 1l0q_A Surface layer protein; 99.9 1.6E-19 5.4E-24 181.9 28.3 213 248-490 3-219 (391)
123 2w18_A PALB2, fancn, partner a 99.9 1.3E-20 4.5E-25 184.3 19.1 161 231-458 174-355 (356)
124 3vu4_A KMHSV2; beta-propeller 99.9 5.3E-20 1.8E-24 184.1 23.2 189 279-492 14-262 (355)
125 1yfq_A Cell cycle arrest prote 99.9 2E-20 6.9E-25 184.4 19.8 189 280-492 7-216 (342)
126 4gq1_A NUP37; propeller, trans 99.8 7.6E-21 2.6E-25 193.0 15.8 218 229-458 130-387 (393)
127 2oit_A Nucleoporin 214KDA; NH2 99.8 3.5E-20 1.2E-24 190.7 17.9 199 237-489 38-259 (434)
128 2hqs_A Protein TOLB; TOLB, PAL 99.8 9.1E-19 3.1E-23 179.1 26.3 190 230-492 173-375 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.1E-17 3.6E-22 171.2 24.1 173 247-491 143-331 (415)
130 2oit_A Nucleoporin 214KDA; NH2 99.8 6.9E-18 2.4E-22 173.6 22.2 192 235-490 92-321 (434)
131 2ojh_A Uncharacterized protein 99.8 4.4E-18 1.5E-22 163.0 19.4 231 232-491 38-292 (297)
132 3vgz_A Uncharacterized protein 99.7 6.6E-16 2.2E-20 152.6 28.4 225 238-491 91-334 (353)
133 1nir_A Nitrite reductase; hemo 99.7 5.2E-16 1.8E-20 164.1 25.1 225 238-489 181-439 (543)
134 2ojh_A Uncharacterized protein 99.7 7.5E-16 2.6E-20 147.3 24.0 212 252-491 17-237 (297)
135 3u4y_A Uncharacterized protein 99.7 5.1E-16 1.7E-20 152.4 22.6 229 240-491 44-293 (331)
136 1ri6_A Putative isomerase YBHE 99.7 1E-15 3.5E-20 150.3 23.7 232 236-490 38-296 (343)
137 2ecf_A Dipeptidyl peptidase IV 99.7 2.7E-16 9.2E-21 172.1 18.2 224 237-491 38-357 (741)
138 3vgz_A Uncharacterized protein 99.7 5.7E-15 2E-19 145.8 25.8 227 236-490 41-291 (353)
139 1nir_A Nitrite reductase; hemo 99.7 4.8E-15 1.6E-19 156.7 25.3 219 241-489 143-389 (543)
140 3hfq_A Uncharacterized protein 99.7 7.2E-15 2.5E-19 145.5 25.1 231 236-491 40-306 (347)
141 3u4y_A Uncharacterized protein 99.7 1.5E-14 5.1E-19 141.9 27.1 222 242-490 4-240 (331)
142 1xfd_A DIP, dipeptidyl aminope 99.7 6.5E-16 2.2E-20 168.5 18.8 220 238-488 19-323 (723)
143 3o4h_A Acylamino-acid-releasin 99.7 8.7E-16 3E-20 163.5 18.3 223 237-492 23-267 (582)
144 2ecf_A Dipeptidyl peptidase IV 99.7 4.5E-15 1.5E-19 162.4 22.8 240 237-490 110-399 (741)
145 1ri6_A Putative isomerase YBHE 99.7 1.5E-14 5.3E-19 141.8 24.0 217 249-489 7-249 (343)
146 1k32_A Tricorn protease; prote 99.7 4.1E-15 1.4E-19 169.3 22.0 183 235-491 295-492 (1045)
147 1xfd_A DIP, dipeptidyl aminope 99.6 1.1E-14 3.9E-19 158.6 22.5 242 238-491 63-380 (723)
148 3scy_A Hypothetical bacterial 99.6 1.1E-13 3.9E-18 137.7 27.5 235 235-490 49-325 (361)
149 1pby_B Quinohemoprotein amine 99.6 6E-14 2E-18 137.2 24.9 219 248-491 2-300 (337)
150 2z3z_A Dipeptidyl aminopeptida 99.6 3.9E-14 1.3E-18 154.1 25.9 230 236-490 121-420 (706)
151 1jmx_B Amine dehydrogenase; ox 99.6 5.5E-14 1.9E-18 138.3 24.4 234 241-491 5-315 (349)
152 1pby_B Quinohemoprotein amine 99.6 1E-13 3.4E-18 135.6 24.3 210 237-465 83-315 (337)
153 1k32_A Tricorn protease; prote 99.6 2.9E-14 1E-18 162.3 21.0 226 231-490 199-440 (1045)
154 2z3z_A Dipeptidyl aminopeptida 99.6 5.3E-14 1.8E-18 153.0 21.6 241 237-491 83-376 (706)
155 1z68_A Fibroblast activation p 99.6 1.1E-14 3.6E-19 159.0 12.3 221 240-487 20-328 (719)
156 3hfq_A Uncharacterized protein 99.6 8.5E-13 2.9E-17 130.5 24.7 210 234-465 84-324 (347)
157 1jof_A Carboxy-CIS,CIS-muconat 99.5 2.2E-13 7.4E-18 136.3 18.4 230 237-491 41-330 (365)
158 3pe7_A Oligogalacturonate lyas 99.5 1.2E-13 4E-18 138.6 16.1 235 241-488 41-307 (388)
159 3scy_A Hypothetical bacterial 99.5 2.3E-12 7.9E-17 128.2 25.0 225 244-491 10-279 (361)
160 4a5s_A Dipeptidyl peptidase 4 99.5 3.1E-13 1E-17 148.2 18.7 176 239-488 20-277 (740)
161 3o4h_A Acylamino-acid-releasin 99.5 1.1E-12 3.7E-17 139.6 21.9 218 237-491 66-302 (582)
162 2oiz_A Aromatic amine dehydrog 99.5 2.8E-12 9.7E-17 128.3 23.8 232 240-483 54-360 (361)
163 1q7f_A NHL, brain tumor CG1071 99.5 1.4E-11 4.9E-16 118.2 27.1 230 233-488 27-268 (286)
164 1jmx_B Amine dehydrogenase; ox 99.5 2.8E-12 9.6E-17 126.0 22.2 216 238-466 45-331 (349)
165 1z68_A Fibroblast activation p 99.5 4.5E-13 1.5E-17 146.1 17.4 242 238-491 62-376 (719)
166 3e5z_A Putative gluconolactona 99.5 2.1E-11 7.2E-16 117.8 25.7 233 238-491 30-277 (296)
167 2dg1_A DRP35, lactonase; beta 99.4 1.5E-10 5.3E-15 113.4 30.3 232 237-491 46-300 (333)
168 3fvz_A Peptidyl-glycine alpha- 99.4 1.6E-10 5.5E-15 113.7 29.0 227 236-490 24-311 (329)
169 4a5s_A Dipeptidyl peptidase 4 99.4 9.8E-13 3.3E-17 144.2 13.9 222 241-489 67-338 (740)
170 3c5m_A Oligogalacturonate lyas 99.4 5.7E-12 1.9E-16 126.2 18.3 237 237-489 37-301 (396)
171 1xip_A Nucleoporin NUP159; bet 99.4 9.2E-12 3.2E-16 124.9 19.2 177 237-488 39-231 (388)
172 1jof_A Carboxy-CIS,CIS-muconat 99.4 1E-10 3.6E-15 116.7 24.6 231 250-490 5-274 (365)
173 2gop_A Trilobed protease; beta 99.4 1.7E-10 5.9E-15 113.6 24.9 218 237-491 60-320 (347)
174 3pe7_A Oligogalacturonate lyas 99.4 7E-11 2.4E-15 118.2 22.3 227 240-490 85-370 (388)
175 3azo_A Aminopeptidase; POP fam 99.3 2.8E-11 9.5E-16 130.5 18.8 183 237-487 131-351 (662)
176 3azo_A Aminopeptidase; POP fam 99.3 2.4E-11 8.4E-16 130.9 15.9 193 233-491 21-262 (662)
177 3no2_A Uncharacterized protein 99.3 3.3E-10 1.1E-14 108.8 21.6 212 246-489 4-231 (276)
178 3c5m_A Oligogalacturonate lyas 99.3 4E-11 1.4E-15 120.0 15.1 226 241-490 86-370 (396)
179 1rwi_B Serine/threonine-protei 99.3 7.2E-10 2.5E-14 104.9 21.7 225 237-491 25-254 (270)
180 2dg1_A DRP35, lactonase; beta 99.2 3.5E-10 1.2E-14 110.9 20.0 181 236-489 6-200 (333)
181 2xdw_A Prolyl endopeptidase; a 99.2 1.5E-09 5E-14 118.4 25.3 232 238-490 127-399 (710)
182 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.2E-08 4.2E-13 98.6 26.9 241 236-490 18-287 (314)
183 3g4e_A Regucalcin; six bladed 99.2 3.6E-08 1.2E-12 95.3 29.1 230 240-490 17-261 (297)
184 1q7f_A NHL, brain tumor CG1071 99.2 7.7E-09 2.6E-13 98.9 23.6 191 238-461 79-281 (286)
185 2bkl_A Prolyl endopeptidase; m 99.1 1.3E-09 4.4E-14 118.5 20.1 187 237-491 122-339 (695)
186 3fvz_A Peptidyl-glycine alpha- 99.1 1.1E-08 3.6E-13 100.6 24.8 202 237-460 92-322 (329)
187 2gop_A Trilobed protease; beta 99.1 1.2E-09 4E-14 107.5 16.8 165 241-491 20-235 (347)
188 2oiz_A Aromatic amine dehydrog 99.1 1.4E-08 4.7E-13 101.4 22.8 221 255-490 29-324 (361)
189 3dsm_A Uncharacterized protein 99.1 1E-08 3.5E-13 100.8 21.1 181 241-489 49-243 (328)
190 2z2n_A Virginiamycin B lyase; 99.1 1.4E-07 4.9E-12 90.0 28.1 223 236-488 15-242 (299)
191 2mad_H Methylamine dehydrogena 99.1 1.3E-07 4.3E-12 94.8 28.7 226 240-472 70-363 (373)
192 2ghs_A AGR_C_1268P; regucalcin 99.0 1.4E-07 4.9E-12 92.4 27.9 223 240-490 53-291 (326)
193 2xdw_A Prolyl endopeptidase; a 99.0 1.3E-08 4.5E-13 110.7 22.5 207 282-491 122-356 (710)
194 2bkl_A Prolyl endopeptidase; m 99.0 2E-09 6.7E-14 117.0 15.0 181 242-489 74-288 (695)
195 2z2n_A Virginiamycin B lyase; 99.0 3.7E-07 1.2E-11 87.1 28.6 221 238-489 59-284 (299)
196 3hrp_A Uncharacterized protein 99.0 6.9E-08 2.4E-12 98.0 24.2 221 237-489 132-398 (409)
197 3sjl_D Methylamine dehydrogena 99.0 2.4E-08 8.1E-13 99.8 19.5 231 241-481 83-384 (386)
198 3e5z_A Putative gluconolactona 99.0 3.9E-08 1.3E-12 94.6 20.4 189 279-488 22-235 (296)
199 1qks_A Cytochrome CD1 nitrite 99.0 9.6E-08 3.3E-12 100.9 24.4 177 243-490 163-361 (567)
200 1xip_A Nucleoporin NUP159; bet 99.0 9.1E-09 3.1E-13 103.1 15.4 131 238-448 90-232 (388)
201 1rwi_B Serine/threonine-protei 98.9 1.2E-07 4E-12 89.5 21.4 196 238-462 69-266 (270)
202 1qks_A Cytochrome CD1 nitrite 98.9 2.3E-07 7.9E-12 98.0 25.6 224 240-489 201-458 (567)
203 2qc5_A Streptogramin B lactona 98.9 1.4E-06 4.8E-11 83.0 28.4 220 237-488 21-247 (300)
204 2qe8_A Uncharacterized protein 98.9 1.2E-07 4.2E-12 93.5 21.4 237 237-489 18-309 (343)
205 3dr2_A Exported gluconolactona 98.9 1.2E-07 4.2E-12 91.8 21.0 230 240-491 49-297 (305)
206 1yr2_A Prolyl oligopeptidase; 98.9 9.4E-08 3.2E-12 104.6 20.6 242 243-491 114-383 (741)
207 2qc5_A Streptogramin B lactona 98.9 1.6E-06 5.5E-11 82.6 26.5 221 238-488 64-289 (300)
208 3dsm_A Uncharacterized protein 98.8 1.7E-07 5.7E-12 92.0 19.5 180 239-488 87-285 (328)
209 3c75_H MADH, methylamine dehyd 98.8 6.5E-08 2.2E-12 98.1 16.5 238 240-481 122-423 (426)
210 1yr2_A Prolyl oligopeptidase; 98.8 9E-07 3.1E-11 96.8 25.5 226 238-489 165-425 (741)
211 3no2_A Uncharacterized protein 98.8 2.9E-07 1E-11 88.1 18.4 171 295-491 4-185 (276)
212 1mda_H Methylamine dehydrogena 98.8 9.4E-08 3.2E-12 95.3 15.1 229 240-481 69-367 (368)
213 2mad_H Methylamine dehydrogena 98.7 9.7E-06 3.3E-10 81.0 28.9 231 243-489 28-337 (373)
214 3iuj_A Prolyl endopeptidase; h 98.7 5.6E-07 1.9E-11 97.6 21.4 225 238-490 131-390 (693)
215 3sjl_D Methylamine dehydrogena 98.7 5.5E-07 1.9E-11 89.9 19.4 239 241-489 38-350 (386)
216 1pjx_A Dfpase, DIISOPROPYLFLUO 98.7 2.4E-06 8.2E-11 82.2 21.2 203 237-460 72-299 (314)
217 2hz6_A Endoplasmic reticulum t 98.5 7.1E-08 2.4E-12 96.5 6.7 205 246-484 8-217 (369)
218 3iuj_A Prolyl endopeptidase; h 98.5 2.1E-06 7.2E-11 93.1 17.7 200 282-490 126-345 (693)
219 3g4e_A Regucalcin; six bladed 98.5 1.4E-05 4.6E-10 76.9 20.1 191 237-448 55-260 (297)
220 2iwa_A Glutamine cyclotransfer 98.5 3.3E-05 1.1E-09 73.0 22.1 181 286-490 22-225 (266)
221 3hrp_A Uncharacterized protein 98.5 3.2E-05 1.1E-09 78.3 23.7 192 241-458 176-408 (409)
222 3dr2_A Exported gluconolactona 98.4 6.8E-06 2.3E-10 79.4 17.2 144 280-490 40-207 (305)
223 2ece_A 462AA long hypothetical 98.4 1.7E-05 5.9E-10 79.9 19.8 182 245-490 93-340 (462)
224 3c75_H MADH, methylamine dehyd 98.4 1E-05 3.4E-10 82.1 17.2 235 245-489 82-389 (426)
225 3nol_A Glutamine cyclotransfer 98.4 8.3E-05 2.8E-09 69.6 21.8 178 287-490 45-244 (262)
226 1fwx_A Nitrous oxide reductase 98.3 5.7E-05 1.9E-09 78.8 21.0 234 244-490 98-407 (595)
227 2qe8_A Uncharacterized protein 98.3 2.9E-05 9.9E-10 76.3 18.0 105 386-490 64-214 (343)
228 2ghs_A AGR_C_1268P; regucalcin 98.3 4.6E-05 1.6E-09 74.4 19.2 97 389-489 90-197 (326)
229 2ece_A 462AA long hypothetical 98.3 4.1E-05 1.4E-09 77.2 18.7 182 241-489 143-399 (462)
230 1kb0_A Quinohemoprotein alcoho 98.3 3.2E-05 1.1E-09 83.4 19.2 79 409-488 457-537 (677)
231 1mda_H Methylamine dehydrogena 98.3 4.1E-05 1.4E-09 76.1 18.5 216 258-489 47-332 (368)
232 3nok_A Glutaminyl cyclase; bet 98.2 0.0001 3.5E-09 69.1 19.6 178 286-490 56-254 (268)
233 3mbr_X Glutamine cyclotransfer 98.2 0.00057 2E-08 63.3 23.7 180 285-490 21-223 (243)
234 1yiq_A Quinohemoprotein alcoho 98.2 5.1E-05 1.7E-09 82.1 19.0 79 408-487 454-534 (689)
235 1npe_A Nidogen, entactin; glyc 98.1 0.0014 4.8E-08 61.5 25.6 219 238-483 38-263 (267)
236 2iwa_A Glutamine cyclotransfer 98.1 0.00095 3.2E-08 62.9 22.6 195 240-461 25-238 (266)
237 2p4o_A Hypothetical protein; p 98.0 0.002 6.9E-08 61.9 25.4 222 240-490 36-277 (306)
238 2fp8_A Strictosidine synthase; 98.0 0.00054 1.9E-08 66.3 20.5 188 237-488 20-246 (322)
239 3nol_A Glutamine cyclotransfer 97.9 0.0016 5.4E-08 60.9 20.8 181 241-450 48-246 (262)
240 1npe_A Nidogen, entactin; glyc 97.9 0.0046 1.6E-07 57.8 23.7 177 248-490 2-186 (267)
241 3qqz_A Putative uncharacterize 97.8 0.0028 9.5E-08 59.3 21.2 195 233-488 24-241 (255)
242 3hxj_A Pyrrolo-quinoline quino 97.8 0.0012 4E-08 63.5 18.8 204 247-488 107-312 (330)
243 2hz6_A Endoplasmic reticulum t 97.8 4E-06 1.4E-10 83.7 0.2 140 295-464 8-153 (369)
244 3nok_A Glutaminyl cyclase; bet 97.7 0.0049 1.7E-07 57.7 21.0 183 241-452 60-258 (268)
245 1k3i_A Galactose oxidase precu 97.7 0.0066 2.3E-07 65.0 23.5 97 393-490 403-530 (656)
246 1flg_A Protein (quinoprotein e 97.6 0.0018 6E-08 68.5 17.0 80 407-487 464-545 (582)
247 2xe4_A Oligopeptidase B; hydro 97.5 0.0021 7.3E-08 70.1 17.9 180 239-488 177-384 (751)
248 3mbr_X Glutamine cyclotransfer 97.5 0.015 5.2E-07 53.7 21.0 183 241-452 26-227 (243)
249 3hxj_A Pyrrolo-quinoline quino 97.5 0.0051 1.7E-07 59.0 17.9 164 296-487 107-271 (330)
250 1kb0_A Quinohemoprotein alcoho 97.4 0.0088 3E-07 64.3 21.0 90 401-491 329-497 (677)
251 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.015 5.2E-07 57.1 21.1 194 247-465 143-342 (376)
252 4a2l_A BT_4663, two-component 97.4 0.11 3.9E-06 56.6 30.1 227 238-488 217-469 (795)
253 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.034 1.2E-06 54.6 23.3 196 246-466 52-264 (376)
254 1kv9_A Type II quinohemoprotei 97.4 0.0035 1.2E-07 67.4 17.2 78 407-485 436-515 (668)
255 2ad6_A Methanol dehydrogenase 97.4 0.0066 2.2E-07 63.9 18.3 82 407-489 442-525 (571)
256 2fp8_A Strictosidine synthase; 97.3 0.024 8.2E-07 54.5 20.4 94 391-488 187-300 (322)
257 4a2l_A BT_4663, two-component 97.3 0.13 4.4E-06 56.2 28.4 224 237-489 264-516 (795)
258 1yiq_A Quinohemoprotein alcoho 97.2 0.012 4.1E-07 63.4 18.9 43 450-492 454-496 (689)
259 1fwx_A Nitrous oxide reductase 97.2 0.006 2E-07 63.6 15.4 187 299-490 18-296 (595)
260 2ism_A Putative oxidoreductase 97.2 0.1 3.5E-06 51.1 23.4 242 237-489 32-333 (352)
261 3tc9_A Hypothetical hydrolase; 97.1 0.016 5.4E-07 58.7 17.4 100 389-489 179-288 (430)
262 1w6s_A Methanol dehydrogenase 97.0 0.046 1.6E-06 57.7 20.5 79 407-486 451-531 (599)
263 3sre_A PON1, serum paraoxonase 97.0 0.18 6.3E-06 49.3 23.2 100 389-489 165-285 (355)
264 3amr_A 3-phytase; beta-propell 96.8 0.16 5.4E-06 49.4 20.9 178 295-489 39-250 (355)
265 3v9f_A Two-component system se 96.8 0.36 1.2E-05 52.5 26.2 229 238-488 260-512 (781)
266 2xe4_A Oligopeptidase B; hydro 96.7 0.075 2.6E-06 57.8 20.0 73 238-315 223-304 (751)
267 2p9w_A MAL S 1 allergenic prot 96.7 0.08 2.7E-06 51.1 17.8 99 391-490 65-204 (334)
268 2p9w_A MAL S 1 allergenic prot 96.7 0.12 4E-06 49.9 18.7 197 240-489 17-252 (334)
269 3v65_B Low-density lipoprotein 96.7 0.56 1.9E-05 46.3 28.1 209 240-478 81-296 (386)
270 3v9f_A Two-component system se 96.6 0.59 2E-05 50.7 26.4 99 388-488 362-467 (781)
271 4hw6_A Hypothetical protein, I 96.6 0.7 2.4E-05 46.5 24.9 94 392-487 276-419 (433)
272 2p4o_A Hypothetical protein; p 96.6 0.25 8.6E-06 46.9 20.4 97 390-489 73-185 (306)
273 2xbg_A YCF48-like protein; pho 96.6 0.15 5.2E-06 49.1 18.8 99 388-489 204-311 (327)
274 1kv9_A Type II quinohemoprotei 96.5 0.18 6.2E-06 53.9 21.0 72 392-464 233-337 (668)
275 3tc9_A Hypothetical hydrolase; 96.5 0.11 3.8E-06 52.4 17.8 69 390-459 227-300 (430)
276 3v64_C Agrin; beta propeller, 96.4 0.78 2.7E-05 44.6 27.7 211 238-478 36-253 (349)
277 3p5b_L Low density lipoprotein 96.4 0.85 2.9E-05 45.2 23.6 101 389-489 159-264 (400)
278 1ijq_A LDL receptor, low-densi 96.3 0.8 2.7E-05 43.7 25.2 100 390-489 78-182 (316)
279 4hw6_A Hypothetical protein, I 96.2 0.095 3.3E-06 52.9 15.8 101 389-489 182-291 (433)
280 3v65_B Low-density lipoprotein 96.2 0.67 2.3E-05 45.7 21.4 196 239-462 119-320 (386)
281 3m0c_C LDL receptor, low-densi 96.1 1 3.5E-05 49.0 23.7 101 389-489 471-576 (791)
282 2ad6_A Methanol dehydrogenase 96.0 0.44 1.5E-05 49.9 20.1 72 247-325 115-195 (571)
283 3kya_A Putative phosphatase; s 96.0 0.17 5.9E-06 51.8 16.0 101 389-489 186-328 (496)
284 3a9g_A Putative uncharacterize 95.9 1.3 4.6E-05 43.0 24.3 242 237-488 30-329 (354)
285 1ijq_A LDL receptor, low-densi 95.9 1.2 4.1E-05 42.4 23.2 176 239-479 33-217 (316)
286 2xbg_A YCF48-like protein; pho 95.6 1.7 5.8E-05 41.6 23.4 99 388-489 162-268 (327)
287 3v64_C Agrin; beta propeller, 95.6 1.8 6.3E-05 41.8 22.9 196 239-462 76-277 (349)
288 3pbp_A Nucleoporin NUP82; beta 95.4 0.49 1.7E-05 47.1 16.3 68 387-456 123-208 (452)
289 1cru_A Protein (soluble quinop 95.4 0.78 2.7E-05 46.5 18.5 33 284-316 26-58 (454)
290 1n7d_A LDL receptor, low-densi 95.3 0.13 4.4E-06 55.4 13.1 205 238-466 408-620 (699)
291 1w6s_A Methanol dehydrogenase 95.3 1.2 4.1E-05 46.8 20.2 71 393-465 245-347 (599)
292 3qqz_A Putative uncharacterize 95.3 0.39 1.3E-05 44.6 14.7 105 383-489 21-139 (255)
293 3m0c_C LDL receptor, low-densi 95.3 3 0.0001 45.3 23.8 159 239-462 427-591 (791)
294 3p5b_L Low density lipoprotein 95.2 2.7 9.1E-05 41.6 26.2 203 238-464 114-324 (400)
295 3pbp_A Nucleoporin NUP82; beta 95.1 0.41 1.4E-05 47.7 14.6 77 238-315 68-158 (452)
296 3a9g_A Putative uncharacterize 95.0 0.57 1.9E-05 45.7 15.4 97 389-487 73-214 (354)
297 1k3i_A Galactose oxidase precu 94.9 0.099 3.4E-06 55.8 10.5 75 391-466 245-329 (656)
298 3das_A Putative oxidoreductase 94.9 1.1 3.9E-05 43.4 17.1 35 283-317 30-64 (347)
299 2ism_A Putative oxidoreductase 94.8 0.66 2.3E-05 45.2 15.5 27 285-312 31-57 (352)
300 3sov_A LRP-6, low-density lipo 94.5 3.4 0.00012 39.4 22.4 196 240-462 39-240 (318)
301 3sre_A PON1, serum paraoxonase 94.3 1.5 5.1E-05 42.7 16.5 80 408-490 138-240 (355)
302 2g8s_A Glucose/sorbosone dehyd 94.2 0.7 2.4E-05 45.0 14.0 29 285-313 18-46 (353)
303 3sov_A LRP-6, low-density lipo 93.9 4.5 0.00015 38.5 23.9 198 256-479 12-217 (318)
304 2g8s_A Glucose/sorbosone dehyd 93.8 5.2 0.00018 38.7 25.7 63 426-488 268-340 (353)
305 1n7d_A LDL receptor, low-densi 93.6 0.45 1.5E-05 51.1 12.3 74 389-462 496-573 (699)
306 2xzh_A Clathrin heavy chain 1; 93.6 5.5 0.00019 38.3 24.9 223 241-485 72-316 (365)
307 3kya_A Putative phosphatase; s 93.4 1 3.5E-05 46.0 13.9 67 392-459 250-340 (496)
308 1tl2_A L10, protein (tachylect 93.4 0.73 2.5E-05 41.7 11.1 94 391-488 90-199 (236)
309 1flg_A Protein (quinoprotein e 93.3 1.4 4.9E-05 46.0 15.2 26 401-426 338-363 (582)
310 1bpo_A Protein (clathrin); cla 92.7 9 0.00031 38.3 25.4 224 241-486 71-316 (494)
311 1tl2_A L10, protein (tachylect 92.6 0.11 3.6E-06 47.1 4.6 96 389-488 41-152 (236)
312 3s94_A LRP-6, low-density lipo 92.5 11 0.00038 39.6 20.9 198 239-463 43-246 (619)
313 3amr_A 3-phytase; beta-propell 92.4 8.3 0.00029 37.3 24.5 195 245-464 38-268 (355)
314 3ei3_A DNA damage-binding prot 92.3 18 0.00062 41.0 29.7 100 390-491 515-626 (1158)
315 3s94_A LRP-6, low-density lipo 92.2 13 0.00045 39.0 21.9 101 389-489 84-189 (619)
316 4a0p_A LRP6, LRP-6, low-densit 91.6 15 0.00051 38.6 26.7 205 249-480 8-217 (628)
317 2zwa_A Leucine carboxyl methyl 91.2 10 0.00035 40.4 19.0 98 393-493 543-677 (695)
318 4a0p_A LRP6, LRP-6, low-densit 90.6 19 0.00065 37.8 21.9 101 389-489 80-184 (628)
319 3ei3_A DNA damage-binding prot 90.4 28 0.00096 39.5 26.8 218 248-490 524-756 (1158)
320 3das_A Putative oxidoreductase 90.3 14 0.00047 35.7 24.3 247 235-489 31-326 (347)
321 2xn4_A Kelch-like protein 2; s 89.9 12 0.00042 34.6 16.8 65 399-466 204-282 (302)
322 1cru_A Protein (soluble quinop 86.9 9.2 0.00032 38.4 14.1 101 388-489 26-162 (454)
323 3ii7_A Kelch-like protein 7; p 86.4 20 0.0007 33.1 18.8 63 399-464 200-276 (306)
324 3sbq_A Nitrous-oxide reductase 86.0 2.3 7.9E-05 43.8 8.7 100 389-489 323-453 (638)
325 1xi4_A Clathrin heavy chain; a 85.8 21 0.00072 41.2 16.9 202 241-464 71-293 (1630)
326 3s25_A Hypothetical 7-bladed b 85.5 24 0.00083 33.1 16.7 60 242-313 59-134 (302)
327 2vpj_A Kelch-like protein 12; 84.4 25 0.00086 32.3 19.4 88 399-491 159-263 (301)
328 2vpj_A Kelch-like protein 12; 84.2 25 0.00087 32.3 19.4 64 399-465 206-283 (301)
329 1zgk_A Kelch-like ECH-associat 80.9 35 0.0012 31.6 18.2 64 399-465 215-292 (308)
330 2uvk_A YJHT; unknown function, 80.8 31 0.0011 32.6 14.5 53 410-465 286-347 (357)
331 4asc_A Kelch repeat and BTB do 80.7 36 0.0012 31.6 16.5 65 399-466 196-283 (315)
332 4gq2_M Nucleoporin NUP120; bet 78.7 38 0.0013 37.5 15.8 39 286-324 237-275 (950)
333 2rr3_B OSBP, oxysterol-binding 78.1 1.1 3.7E-05 28.4 1.8 20 4-23 12-31 (47)
334 2xn4_A Kelch-like protein 2; s 77.8 42 0.0015 30.7 18.9 80 409-491 173-261 (302)
335 2be1_A Serine/threonine-protei 77.5 36 0.0012 32.6 13.4 61 406-467 64-137 (339)
336 4gq2_M Nucleoporin NUP120; bet 75.1 1.1E+02 0.0036 33.9 23.2 38 389-426 236-274 (950)
337 1zgk_A Kelch-like ECH-associat 74.9 52 0.0018 30.3 19.5 88 399-491 168-272 (308)
338 2xzh_A Clathrin heavy chain 1; 74.6 62 0.0021 31.0 19.9 76 388-464 259-336 (365)
339 2wg3_C Hedgehog-interacting pr 68.4 1E+02 0.0034 30.8 14.9 101 389-490 14-158 (463)
340 2be1_A Serine/threonine-protei 64.8 96 0.0033 29.6 13.2 24 400-423 213-236 (339)
341 3ii7_A Kelch-like protein 7; p 62.4 93 0.0032 28.4 21.1 79 408-491 168-257 (306)
342 2woz_A Kelch repeat and BTB do 62.4 97 0.0033 28.5 15.9 65 399-466 206-293 (318)
343 4asc_A Kelch repeat and BTB do 59.2 1.1E+02 0.0037 28.1 20.1 85 401-490 151-252 (315)
344 2zwa_A Leucine carboxyl methyl 58.0 1.9E+02 0.0064 30.5 15.6 93 399-491 500-617 (695)
345 3sbq_A Nitrous-oxide reductase 56.6 56 0.0019 33.7 10.1 73 389-462 378-480 (638)
346 3ott_A Two-component system se 55.0 2.1E+02 0.0072 30.1 23.3 99 389-488 419-534 (758)
347 4fhn_B Nucleoporin NUP120; pro 54.3 1.7E+02 0.0059 32.9 15.0 37 390-426 239-276 (1139)
348 3s25_A Hypothetical 7-bladed b 50.8 1.6E+02 0.0053 27.4 18.1 51 242-304 20-72 (302)
349 4a9v_A PHOX; hydrolase, beta-p 50.0 57 0.002 33.7 9.1 61 429-490 476-550 (592)
350 3f7f_A Nucleoporin NUP120; nuc 49.7 21 0.00073 37.9 6.0 37 286-324 223-259 (729)
351 3f7f_A Nucleoporin NUP120; nuc 48.2 25 0.00086 37.3 6.2 34 429-465 222-255 (729)
352 2uvk_A YJHT; unknown function, 47.5 1.8E+02 0.0061 27.1 16.3 38 452-491 286-326 (357)
353 1xi4_A Clathrin heavy chain; a 46.7 4E+02 0.014 31.0 16.9 74 390-464 260-335 (1630)
354 3zwu_A Alkaline phosphatase PH 46.4 55 0.0019 34.0 8.5 59 430-489 477-549 (592)
355 4fhn_B Nucleoporin NUP120; pro 46.0 15 0.00052 41.6 4.6 40 286-325 239-278 (1139)
356 1bpo_A Protein (clathrin); cla 45.9 2.4E+02 0.0083 28.2 20.3 75 388-463 258-334 (494)
357 2woz_A Kelch repeat and BTB do 42.0 2E+02 0.007 26.2 20.2 90 399-491 158-263 (318)
358 3q6k_A 43.2 kDa salivary prote 40.2 2.5E+02 0.0085 27.2 11.6 79 410-488 124-241 (381)
359 3b7f_A Glycosyl hydrolase, BNR 36.3 2.6E+02 0.0089 26.5 11.4 28 430-457 116-144 (394)
360 4a9v_A PHOX; hydrolase, beta-p 34.2 1.7E+02 0.0058 30.2 9.6 59 389-448 476-549 (592)
361 3ott_A Two-component system se 33.8 4.4E+02 0.015 27.6 23.7 95 390-488 192-296 (758)
362 2wg3_C Hedgehog-interacting pr 29.7 4.2E+02 0.014 26.2 27.8 103 385-489 214-354 (463)
363 3zwu_A Alkaline phosphatase PH 29.6 1.7E+02 0.0058 30.3 8.9 57 390-447 477-548 (592)
364 3q6k_A 43.2 kDa salivary prote 26.7 4.4E+02 0.015 25.4 24.1 100 389-489 220-342 (381)
365 1q47_A Semaphorin 3A; beta pro 24.5 1.2E+02 0.0042 30.5 6.6 63 248-310 422-487 (495)
366 1q47_A Semaphorin 3A; beta pro 23.4 3.7E+02 0.013 27.0 10.0 76 379-455 394-487 (495)
367 3b7f_A Glycosyl hydrolase, BNR 21.4 5.1E+02 0.018 24.3 19.2 61 429-489 177-251 (394)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.7e-32 Score=269.49 Aligned_cols=235 Identities=14% Similarity=0.217 Sum_probs=191.6
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
+...+.+++|+|++ .|++|+.||+|+|||+........ ....+.+|.+.|++|+|+|+|++|++|+.|++|+|||+
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~---~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIV---SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEE---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeE---eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 44567889999985 678999999999999986543221 11245689999999999999999999999999999999
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE--ecCCCCE
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHSSEV 391 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V 391 (493)
.+++.+..+..+...+.++.|.+..... .+.++.++.+.+|+.+... +...+ ..|...+
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~---------------l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~ 217 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAASPHKDSV---------------FLSCSEDNRILLWDTRCPK----PASQIGCSAPGYLP 217 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSSCTTE---------------EEEEETTSCEEEEETTSSS----CEEECC----CCCE
T ss_pred CCCcEEEEEcCcCCceEEEEecCCCCCc---------------eeeeccccccccccccccc----eeeeeecceeeccc
Confidence 9999999998888888777776655332 2345667788888775432 33333 3466789
Q ss_pred eEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCC-CEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126 392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD-NYFISGSIDGKVRIWEVRRCQVVDYT 467 (493)
Q Consensus 392 ~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~-~~l~sgs~Dg~V~IWdl~~~~~~~~~ 467 (493)
++++|+|++ +|++|+.|++|+|||+++++++..+. |...|++++|+| ++ ++|++|+.|++|+|||+.+++++.+.
T Consensus 218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-~g~~~lasgs~D~~i~vwd~~~~~~~~~~ 296 (344)
T 4gqb_B 218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-HSVPFLASLSEDCSLAVLDSSLSELFRSQ 296 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS-SSSCCEEEEETTSCEEEECTTCCEEEEEC
T ss_pred eeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCcEEEEc
Confidence 999999975 88999999999999999999998886 999999999999 66 68999999999999999999999999
Q ss_pred CCCCCeEEEEEccCCCE-EEEeecCC
Q 011126 468 DIREIVSAVCYCPDGKV-RQNSACNF 492 (493)
Q Consensus 468 ~~~~~I~sv~~spdG~~-l~s~s~d~ 492 (493)
+|...|++++|+|+|+. |++++.|+
T Consensus 297 ~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 297 AHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 99999999999999975 55777675
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-32 Score=278.14 Aligned_cols=260 Identities=17% Similarity=0.243 Sum_probs=215.4
Q ss_pred CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeE
Q 011126 180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV 259 (493)
Q Consensus 180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V 259 (493)
++.|+.+..++++. +|.+...+ ....+.+|.+.+.+++|+|++.+|++|+.|++|
T Consensus 120 ~~~l~s~s~Dg~i~-----vwd~~~~~--------------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 120 FSVMVSASEDATIK-----VWDYETGD--------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp SSEEEEEESSSCEE-----EEETTTCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred CCEEEEEeCCCeEE-----EEECCCCc--------------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 55666666676666 77654321 112355677888899999999999999999999
Q ss_pred EEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCC
Q 011126 260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339 (493)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (493)
+|||+.... ....+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+..+...+.++.+.+++
T Consensus 175 ~iwd~~~~~-------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g- 246 (410)
T 1vyh_C 175 KLWDFQGFE-------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG- 246 (410)
T ss_dssp CEEETTSSC-------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-
T ss_pred EEEeCCCCc-------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-
Confidence 999987533 334578899999999999999999999999999999999999888887776655555443322
Q ss_pred CceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC--------------------
Q 011126 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN-------------------- 399 (493)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-------------------- 399 (493)
...+.++.++.+.+|+.... +....+.+|...|.+++|+|+
T Consensus 247 ---------------~~l~s~s~D~~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 247 ---------------TLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp ---------------SEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred ---------------CEEEEEcCCCeEEEEECCCC----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 23345667788888877543 346678899999999999995
Q ss_pred C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEE
Q 011126 400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAV 476 (493)
Q Consensus 400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv 476 (493)
+ +|++|+.|++|++||++++.++..+. |...|++++|+| ++++|++|+.||+|+|||+.+++.+ .+..|...|+++
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 5 89999999999999999999998886 999999999999 9999999999999999999988765 577899999999
Q ss_pred EEccCCCEEEEeecCC
Q 011126 477 CYCPDGKVRQNSACNF 492 (493)
Q Consensus 477 ~~spdG~~l~s~s~d~ 492 (493)
+|+|++.+|++++.|+
T Consensus 387 ~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 387 DFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp EECSSSSCEEEEETTS
T ss_pred EEcCCCCEEEEEeCCC
Confidence 9999999999999886
No 3
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-31 Score=266.17 Aligned_cols=247 Identities=18% Similarity=0.237 Sum_probs=205.8
Q ss_pred ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc----------------------------------
Q 011126 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS---------------------------------- 272 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~---------------------------------- 272 (493)
....+.+|.+.+.+++|+|++.+|++|+.||+|+|||.........
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 3455778888999999999999999999999999999754332110
Q ss_pred -------ccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeee
Q 011126 273 -------SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI 345 (493)
Q Consensus 273 -------~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (493)
.......+.+|.+.|.++.|+|++.+|++++.|++|++||+.+++.+..+..+...+.++.+.+....
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g----- 210 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG----- 210 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC-----
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC-----
Confidence 01123456789999999999999999999999999999999999998888887776666666554322
Q ss_pred eccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEE
Q 011126 346 DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV 424 (493)
Q Consensus 346 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~ 424 (493)
...+.++.++.+.+|+.+.. +++..+.+|...|++++|+|++ +|++++.|++|++||++.++.+..
T Consensus 211 ---------~~l~sgs~Dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 211 ---------NTFVSGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277 (354)
T ss_dssp ---------CEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ---------CEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 12345667888889887653 4577889999999999999999 999999999999999999988877
Q ss_pred ec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 425 FS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 425 ~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+. +...+++++|+| ++.+|++|+.|++|+|||+.+++.+ .+.+|...|++++|+|||++|++++.|+
T Consensus 278 ~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 278 YSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp ECCTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EcCCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 75 335789999999 9999999999999999999888766 5788999999999999999999999886
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.9e-32 Score=267.08 Aligned_cols=274 Identities=19% Similarity=0.205 Sum_probs=223.4
Q ss_pred hhhhhccccccCC-------CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccc
Q 011126 167 EIEIESRLQESGS-------SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHG 239 (493)
Q Consensus 167 ~~~~~~~lr~v~~-------~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~ 239 (493)
+|... |..+.+ ++.|+....++++. +|.+..... .....+.+|...+.
T Consensus 30 ~H~~~--V~~v~~~~~~~~~~~~l~tgs~D~~v~-----vW~~~~~~~------------------~~~~~l~gh~~~v~ 84 (321)
T 3ow8_A 30 AHDDA--IWSVAWGTNKKENSETVVTGSLDDLVK-----VWKWRDERL------------------DLQWSLEGHQLGVV 84 (321)
T ss_dssp SSSSC--EEEEEEC-------CEEEEEETTSCEE-----EEEEETTEE------------------EEEEEECCCSSCEE
T ss_pred cCCCc--EEEEEEecCCCCCCCEEEEEcCCCCEE-----EEECCCCCe------------------eeeeeeccCCCCEE
Confidence 45544 666655 34677777787777 776532110 01113556778888
Q ss_pred cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeee
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~ 319 (493)
+++|+|++.++++++.|++|+|||+.... ....+..|...+.+++|+|++++|++|+.||.|++|++.+++..
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~-------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~ 157 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGK-------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCC-------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee
Confidence 89999999999999999999999987543 23356788999999999999999999999999999999999888
Q ss_pred eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
..+..+...+.++.+.+++. ..+.++.++.+.+|+.... +.+..+.+|...|.+++|+|+
T Consensus 158 ~~~~~~~~~v~~~~~spdg~----------------~lasg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spd 217 (321)
T 3ow8_A 158 YSLDTRGKFILSIAYSPDGK----------------YLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFSPD 217 (321)
T ss_dssp EEEECSSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTTT----EEEEEECCCSSCCCEEEECTT
T ss_pred EEecCCCceEEEEEECCCCC----------------EEEEEcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEcCC
Confidence 77777666666666554431 2345566778888877543 447788999999999999999
Q ss_pred C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEE
Q 011126 400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAV 476 (493)
Q Consensus 400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv 476 (493)
+ +|++++.|++|+|||++++.++..+. |...|++++|+| ++.+|++|+.|++|+|||+.+++.+ .+..|...|+++
T Consensus 218 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v 296 (321)
T 3ow8_A 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296 (321)
T ss_dssp SCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence 9 99999999999999999999988886 999999999999 9999999999999999999999877 478899999999
Q ss_pred EEccCCCEEEEeecCCC
Q 011126 477 CYCPDGKVRQNSACNFC 493 (493)
Q Consensus 477 ~~spdG~~l~s~s~d~~ 493 (493)
+|+|+|++|++++.|++
T Consensus 297 ~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 297 KYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp EECTTSSEEEEEETTCC
T ss_pred EECCCCCEEEEEeCCCe
Confidence 99999999999998863
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3e-31 Score=260.10 Aligned_cols=239 Identities=18% Similarity=0.231 Sum_probs=203.1
Q ss_pred CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
..+.+|.+.+.+++|+|++++|++|+.||+|+|||+.... ....+..|..+|.+++|+|++++|++|+.|++|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 3567888999999999999999999999999999987543 234678899999999999999999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
++||+.+++.+..+..+...+.++.+.+... ..+.++.++.+.+|+.... ......+.+|.
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~sgs~D~~v~lWd~~~~---~~~~~~~~~h~ 140 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP----------------YVLSGSDDLTVKLWNWENN---WALEQTFEGHE 140 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSS----------------EEEEEETTSCEEEEEGGGT---TEEEEEECCCC
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCC----------------EEEEECCCCeEEEEECCCC---cchhhhhcccC
Confidence 9999999999998888887777777765442 2346677888888876432 12356788999
Q ss_pred CCEeEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccC-CCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 389 SEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 389 ~~V~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
..|.+++|+|. + +|++|+.|++|++||++.......+. |...+..+.|+|. ++.+|++|+.|++|+|||+++++.
T Consensus 141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~ 220 (304)
T 2ynn_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (304)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence 99999999994 5 99999999999999998877665553 6688999999873 567999999999999999999987
Q ss_pred E-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 464 V-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 464 ~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
+ .+.+|...|++++|+|++++|++++.|++
T Consensus 221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred ceeeCCCCCCEEEEEECCCCCEEEEEcCCCe
Confidence 7 57889999999999999999999998863
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-31 Score=271.52 Aligned_cols=236 Identities=20% Similarity=0.308 Sum_probs=207.5
Q ss_pred CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
..+.+|...+.+++|+|++.+|++|+.||+|+|||+.+.. ....+.+|.+.|++++|+|++++|++|+.|++|
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 3467888999999999999999999999999999987543 334688999999999999999999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
+|||+.+++.+..+..+...+.++.+.+++. ..+.++.++.+.+|+.... .++..+.+|.
T Consensus 175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~----------------~l~s~s~D~~i~~wd~~~~----~~~~~~~~h~ 234 (410)
T 1vyh_C 175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGD----------------HIVSASRDKTIKMWEVQTG----YCVKTFTGHR 234 (410)
T ss_dssp CEEETTSSCEEECCCCCSSCEEEEEECSSSS----------------EEEEEETTSEEEEEETTTC----CEEEEEECCS
T ss_pred EEEeCCCCceeEEEcCCCCCEEEEEEeCCCC----------------EEEEEeCCCeEEEEECCCC----cEEEEEeCCC
Confidence 9999999998888888777777777665432 2345677888999987643 4577889999
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCC--------------------CCEEEE
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD--------------------DNYFIS 446 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d--------------------~~~l~s 446 (493)
..|.+++|+|++ +|++|+.|++|++||+.++.+...+. |...|.+++|+| + +.+|++
T Consensus 235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP-ESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC-SCGGGGGGGCCSCC-------CCEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcC-cccccchhhhccccccccCCCCCEEEE
Confidence 999999999999 99999999999999999999988885 999999999999 4 679999
Q ss_pred EeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 447 GSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 447 gs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|+.|++|++||+++++.+ .+.+|...|++++|+|+|++|++++.|+
T Consensus 314 gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 999999999999999877 5788999999999999999999999875
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.8e-31 Score=262.78 Aligned_cols=237 Identities=18% Similarity=0.259 Sum_probs=200.3
Q ss_pred eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
..+...+.+++|+|++.+|++|+.|+.|++|++...... ......+.+|.+.|.++.|++++. |++++.|++|++|
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~w 169 (340)
T 1got_B 94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN---VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 169 (340)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS---CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc---ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEE
Confidence 334556777999999999999999999999998765322 123346789999999999998875 8899999999999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
|+.+++.+..+..+...+.++.+.++. ...+.++.++.+.+|+.... +++..+.+|...|
T Consensus 170 d~~~~~~~~~~~~h~~~v~~~~~~~~~----------------~~l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v 229 (340)
T 1got_B 170 DIETGQQTTTFTGHTGDVMSLSLAPDT----------------RLFVSGACDASAKLWDVREG----MCRQTFTGHESDI 229 (340)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTTC----SEEEEECCCSSCE
T ss_pred ECCCCcEEEEEcCCCCceEEEEECCCC----------------CEEEEEeCCCcEEEEECCCC----eeEEEEcCCcCCE
Confidence 999999988888777766666665533 12345667888888887643 4567889999999
Q ss_pred eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 011126 392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (493)
Q Consensus 392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~---~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~ 466 (493)
++++|+|++ +|++|+.|++|+|||+++++.+..+.|. ..|++++|+| ++++|++|+.||.|++||+.+++.+ .+
T Consensus 230 ~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~ 308 (340)
T 1got_B 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVL 308 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEe
Confidence 999999999 9999999999999999999988888654 4799999999 9999999999999999999988776 57
Q ss_pred cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 467 TDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 467 ~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.+|...|++++|+|+|++|++++.|++
T Consensus 309 ~~h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 309 AGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred ecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 899999999999999999999998863
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-30 Score=259.09 Aligned_cols=236 Identities=19% Similarity=0.332 Sum_probs=196.3
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (493)
...+.+|...+.+++|+|++++|++|+.||+|+||+..... ....+..|...|.+++|+|++++|++|+.|+.
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-------cceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 34567788899999999999999999999999999987543 23457789999999999999999999999999
Q ss_pred EEEEecCCCe----eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 308 VRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 308 V~iWdl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
|++|++.+.. ....+..+...+.++.+.+.. ..+.++.++.+.+|+.... +++..
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------------~l~s~s~d~~i~~wd~~~~----~~~~~ 179 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-----------------QIVTSSGDTTCALWDIETG----QQTTT 179 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-----------------EEEEEETTSCEEEEETTTT----EEEEE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCC-----------------cEEEEECCCcEEEEECCCC----cEEEE
Confidence 9999997653 334444454444444443322 1345667888888887643 34678
Q ss_pred EecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
+.+|...|.+++|+|++ +|++|+.|++|++||++++.++..+. |...|++++|+| ++++|++|+.||+|+|||++++
T Consensus 180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT
T ss_pred EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCC
Confidence 88999999999999999 99999999999999999999998886 999999999999 9999999999999999999998
Q ss_pred eEEEecC---CCCCeEEEEEccCCCEEEEeecCC
Q 011126 462 QVVDYTD---IREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 462 ~~~~~~~---~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+.+.... +...|++++|+|+|++|++|+.|+
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence 8764333 335799999999999999998875
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.3e-31 Score=260.17 Aligned_cols=238 Identities=17% Similarity=0.269 Sum_probs=201.2
Q ss_pred ceeeeecccccceeccC----CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126 230 AMARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~----g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D 305 (493)
....|.+.|.+++|+|+ +.+|++|+.|++|+||++...... ....+.+|...|.+++|+|++.+|++++.|
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-----~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-----LQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-----EEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-----eeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 44568899999999875 668999999999999998644321 223578999999999999999999999999
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
++|++||+.+++.+..+..+...+.++.+.++.. ..+.++.++.+.+|+.... +....+.
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~----------------~l~~g~~dg~v~i~~~~~~----~~~~~~~ 161 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ----------------YLATGTHVGKVNIFGVESG----KKEYSLD 161 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS----------------EEEEECTTSEEEEEETTTC----SEEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC----------------EEEEEcCCCcEEEEEcCCC----ceeEEec
Confidence 9999999999999988887777777777665442 2234556677777766542 3456778
Q ss_pred cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
.|...|.+++|+|++ +|++++.|++|++||+++++++..+. |...|++++|+| ++++|++|+.||+|+|||+++++.
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANL 240 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCE
T ss_pred CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcce
Confidence 899999999999999 99999999999999999999999886 899999999999 999999999999999999998877
Q ss_pred E-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 464 V-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 464 ~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
+ .+.+|...|++++|+|+|++|++++.|++
T Consensus 241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 6 57889999999999999999999998763
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.6e-31 Score=259.09 Aligned_cols=242 Identities=19% Similarity=0.261 Sum_probs=204.3
Q ss_pred cccCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126 226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (493)
.....+.+|.+.+.+++|+|++ ++|++|+.|++|++|++....... ......+.+|...|++++|+|++++|++|+.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 3345678899999999999975 899999999999999986433211 1234568899999999999999999999999
Q ss_pred CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
|++|+|||+.+++.+..+..+...+.++.+.+.. ...+.++.++.+.+|+.+ .+.+..+
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~----------------~~l~s~s~D~~i~vwd~~-----~~~~~~~ 144 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA----------------SMIISGSRDKTIKVWTIK-----GQCLATL 144 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS----------------CEEEEEETTSCEEEEETT-----SCEEEEE
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC----------------CEEEEEeCCCeEEEEECC-----CCeEEEE
Confidence 9999999999999988888877777666665433 234566778888888764 3557788
Q ss_pred ecCCCCEeEEEEeCC------C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126 385 QGHSSEVLDLSWSKN------G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~------g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW 456 (493)
.+|...|.+++|+|. + +|++++.|++|++||+++.+....+. |...|++++|+| ++++|++|+.||+|+||
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iw 223 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 223 (319)
T ss_dssp CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEE
T ss_pred eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence 999999999999984 3 79999999999999999998888775 999999999999 99999999999999999
Q ss_pred eCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 457 EVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 457 dl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
|+.+++.+....+...|.+++|+|+|.+|++++.+
T Consensus 224 d~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~ 258 (319)
T 3frx_A 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT 258 (319)
T ss_dssp ETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT
T ss_pred ECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC
Confidence 99999988665667899999999999999887654
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.6e-31 Score=262.74 Aligned_cols=242 Identities=14% Similarity=0.197 Sum_probs=192.8
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
...|...+.+++|+|++.++ +++.||+|+|||+........ ......+|.+.|++|+|+|++++|++|+.|++|+|
T Consensus 90 ~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~---~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLV---NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp EEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CC---CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEE---EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34566778889999998655 567899999999876543221 11235689999999999999999999999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
||+.+++.+..+..+...+.++.+.+.....+ +..+.++.+.+|+.+...... ...+..|...
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~---------------~s~~~dg~v~~wd~~~~~~~~--~~~~~~~~~~ 228 (357)
T 4g56_B 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF---------------LSCGEDGRILLWDTRKPKPAT--RIDFCASDTI 228 (357)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTCSSCE---------------EEEETTSCEEECCTTSSSCBC--BCCCTTCCSC
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCcee---------------eeeccCCceEEEECCCCceee--eeeecccccc
Confidence 99999999999988887777777765543322 344567788888876433211 1223457788
Q ss_pred EeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (493)
Q Consensus 391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~ 467 (493)
+++++|+|++ +|++|+.|+.|+|||+++++++..+. |...|++++|+|...++|++|+.||+|+|||+++++++...
T Consensus 229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred ccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence 9999999985 88999999999999999999988886 89999999999933478999999999999999999999888
Q ss_pred CCCCCeEEEEEcc-CCCEEEEeecCCC
Q 011126 468 DIREIVSAVCYCP-DGKVRQNSACNFC 493 (493)
Q Consensus 468 ~~~~~I~sv~~sp-dG~~l~s~s~d~~ 493 (493)
+|...|++|+|+| |+++|++++.|++
T Consensus 309 ~H~~~V~~vafsP~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 309 SHRDFVTGVAWSPLDHSKFTTVGWDHK 335 (357)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred CCCCCEEEEEEeCCCCCEEEEEcCCCe
Confidence 9999999999999 8999999998863
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.98 E-value=1.5e-30 Score=256.97 Aligned_cols=281 Identities=15% Similarity=0.206 Sum_probs=217.4
Q ss_pred hhhhhccccccCC----CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccce
Q 011126 167 EIEIESRLQESGS----SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSAT 242 (493)
Q Consensus 167 ~~~~~~~lr~v~~----~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~ 242 (493)
||... |..+.+ ++.|+....++++. +|.+..... .....+..+.+|...+.+++
T Consensus 15 gH~~~--V~~l~~~~~~~~~l~s~s~D~~v~-----~W~~~~~~~---------------~~~~~~~~~~~h~~~v~~~~ 72 (319)
T 3frx_A 15 GHNGW--VTSLATSAGQPNLLLSASRDKTLI-----SWKLTGDDQ---------------KFGVPVRSFKGHSHIVQDCT 72 (319)
T ss_dssp CCSSC--EEEEEECSSCTTEEEEEETTSEEE-----EEEEEEETT---------------EEEEEEEEEECCSSCEEEEE
T ss_pred cccce--EEEEEccCCCccEEEEecCCccEE-----EecCCCCCc---------------cccccceEEeCCcccEEEEE
Confidence 55554 555544 35677788787777 787543211 01122345667888888999
Q ss_pred eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeee
Q 011126 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF 322 (493)
Q Consensus 243 fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~ 322 (493)
|+|++.+|++|+.|++|+|||+.... ..+.+.+|...|.+++|+|++.+|++|+.|++|++||+. ++.+..+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~ 144 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGE-------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCC-------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence 99999999999999999999987543 334688999999999999999999999999999999996 4455566
Q ss_pred eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-e
Q 011126 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~ 401 (493)
..+...+..+.+.+.... .......+.++.++.+.+|+..... ....+.+|...|.+++|+|++ +
T Consensus 145 ~~h~~~v~~~~~~~~~~~----------~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKA----------DDDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTLTASPDGTL 210 (319)
T ss_dssp CCCSSCEEEEEECCC----------------CCEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEEEECTTSSE
T ss_pred eccCCcEEEEEEccCCCC----------CCCccEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEEEEcCCCCE
Confidence 555555555555443211 0112245667788889999876543 356788999999999999999 9
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-e--------cCCCCC
Q 011126 402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y--------TDIREI 472 (493)
Q Consensus 402 l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~--------~~~~~~ 472 (493)
|++++.|++|+|||+.+++++..+.+...|.+++|+| ++.+|++++.+ .+++|++.....+. + ..+...
T Consensus 211 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288 (319)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECS-SSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcC-CCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcc
Confidence 9999999999999999999999999888999999999 99999988755 59999999877653 2 124567
Q ss_pred eEEEEEccCCCEEEEeecCCC
Q 011126 473 VSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 473 I~sv~~spdG~~l~s~s~d~~ 493 (493)
+.+++|+|||++|++++.|++
T Consensus 289 v~~~~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 289 AVSLAWSADGQTLFAGYTDNV 309 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSC
T ss_pred eeEEEECCCCCEEEEeecCce
Confidence 999999999999999998863
No 13
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.98 E-value=1.3e-30 Score=255.43 Aligned_cols=261 Identities=18% Similarity=0.255 Sum_probs=206.0
Q ss_pred CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeE
Q 011126 180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV 259 (493)
Q Consensus 180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V 259 (493)
|+.|+....++++. +|.+.... .+..+..|...+.+++|+|++++|++|+.|++|
T Consensus 25 ~~~l~s~~~dg~v~-----lWd~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 25 EPWVLTTLYSGRVE-----LWNYETQV--------------------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp SSEEEEEETTSEEE-----EEETTTTE--------------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred CCEEEEEcCCCcEE-----EEECCCCc--------------------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 66677777776666 77654321 112344455667789999999999999999999
Q ss_pred EEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC-eeeeeeeccCCCCceEEEeeCC
Q 011126 260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERLDGFDVQDTDPSCLYFTINH 338 (493)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~-~~~~~~~~~~~~~~~~~~~~~~ 338 (493)
+|||+.... ....+.+|.+.|++++|+|++++|++|+.|++|++||+.++ .....+..+...+.++.|.+..
T Consensus 80 ~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 80 RVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp EEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred EEEECCCCc-------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence 999987554 23467899999999999999999999999999999999887 4445566666666666665533
Q ss_pred CCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC--CC-eEEEEeCCCeEEEEE
Q 011126 339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK--NG-FLLSSSADKTVRLWQ 415 (493)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~g-~l~sgs~Dg~V~lWd 415 (493)
.. ..+.++.++.+.+|+..... .......+|...|..++|+| ++ +|++++.|++|+|||
T Consensus 153 ~~---------------~l~sgs~D~~v~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd 214 (304)
T 2ynn_A 153 PS---------------TFASGCLDRTVKVWSLGQST---PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (304)
T ss_dssp TT---------------EEEEEETTSEEEEEETTCSS---CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEE
T ss_pred CC---------------EEEEEeCCCeEEEEECCCCC---ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEe
Confidence 22 23456778888888875322 11223346778899999987 45 999999999999999
Q ss_pred CCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCC--EEEEeecC
Q 011126 416 VGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK--VRQNSACN 491 (493)
Q Consensus 416 ~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~--~l~s~s~d 491 (493)
+++++++..+. |...|++++|+| ++.+|++|+.||+|+|||+.+++++. +..+...+++++|+|+|. ++++|+.+
T Consensus 215 ~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 215 YQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred CCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC
Confidence 99999999887 999999999999 99999999999999999999998874 677888999999999985 56776654
No 14
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=2e-30 Score=253.30 Aligned_cols=240 Identities=19% Similarity=0.258 Sum_probs=188.2
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V 308 (493)
+.+|.+.+.+++|+|+|++||+|+.|++|+||++..... ....++.+|.+.|++++|+| ++++|++|+.|++|
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 456778888999999999999999999999999864321 23456889999999999986 48999999999999
Q ss_pred EEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 309 ~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
+|||+.+++ .+..+..+...+.++.|.+.... ...+.++.++.+.+|+...... .....+.+
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g--------------~~l~s~s~d~~v~~wd~~~~~~--~~~~~~~~ 143 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--------------PMLLVASSDGKVSVVEFKENGT--TSPIIIDA 143 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEEBCSSSC--BCCEEEEC
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC--------------cEEEEEECCCcEEEEEecCCCc--eeeeeeec
Confidence 999998774 33444455555566666554211 1234556677788876643211 11356789
Q ss_pred CCCCEeEEEEeCC-------------C-eEEEEeCCCeEEEEECCCCc----EEEEec-CCCcEEEEEEccCC---CCEE
Q 011126 387 HSSEVLDLSWSKN-------------G-FLLSSSADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVD---DNYF 444 (493)
Q Consensus 387 h~~~V~~l~~sp~-------------g-~l~sgs~Dg~V~lWd~~~~~----~~~~~~-h~~~V~~v~fsp~d---~~~l 444 (493)
|...|.+++|+|+ + +|++|+.|++|+|||++++. ++..+. |...|++++|+| + +.+|
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp-~~~~~~~l 222 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYM 222 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-CCCCceEE
Confidence 9999999999996 4 89999999999999998765 455554 999999999999 6 4899
Q ss_pred EEEeCCCeEEEEeCCCCe----EEEe--cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 445 ISGSIDGKVRIWEVRRCQ----VVDY--TDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 445 ~sgs~Dg~V~IWdl~~~~----~~~~--~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++|+.|++|+|||+.+.. .... ..|...|++++|+|+|++|++++.|+
T Consensus 223 as~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~ 276 (297)
T 2pm7_B 223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (297)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred EEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence 999999999999998642 1222 56788999999999999999999876
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=7.5e-31 Score=265.57 Aligned_cols=276 Identities=17% Similarity=0.231 Sum_probs=214.8
Q ss_pred ccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeE
Q 011126 174 LQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHEL 250 (493)
Q Consensus 174 lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~l 250 (493)
|..+.+ ++.|+.+..++++. +|.+...+ ....+..|...+.+++|+|++++|
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~-----iWd~~~~~--------------------~~~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLI-----VWNALTSQ--------------------KTHAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEE-----EEETTTTE--------------------EEEEEECCCTTCCCCEECTTSSEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEE-----EEECCCCc--------------------cceEEecCCCCEEEEEECCCCCEE
Confidence 555544 67788888787777 88754321 112334566678889999999999
Q ss_pred EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCeeeeeeec-----
Q 011126 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDV----- 324 (493)
Q Consensus 251 asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~----- 324 (493)
++|+.|+.|+||++...............+.+|.+.|.++.|.|+ +.+|++|+.|++|++||+.+++.+..+..
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 999999999999997644333333444567899999999999996 45799999999999999999988766632
Q ss_pred cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE
Q 011126 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~ 403 (493)
+...+.++.+.+. .....+.++.++.+.+|+.+.. .+++..+.+|...|++++|+|++ +|+
T Consensus 204 h~~~v~~~~~~~~---------------~~~~l~sgs~D~~v~~wd~~~~---~~~~~~~~~h~~~v~~v~~~p~~~~l~ 265 (380)
T 3iz6_a 204 HTADVLSLSINSL---------------NANMFISGSCDTTVRLWDLRIT---SRAVRTYHGHEGDINSVKFFPDGQRFG 265 (380)
T ss_dssp CCSCEEEEEECSS---------------SCCEEEEEETTSCEEEEETTTT---CCCCEEECCCSSCCCEEEECTTSSEEE
T ss_pred CccCeEEEEeecC---------------CCCEEEEEECCCeEEEEECCCC---CcceEEECCcCCCeEEEEEecCCCeEE
Confidence 2222222222211 1223456778888999987532 24577889999999999999999 999
Q ss_pred EEeCCCeEEEEECCCCcEEEEecC--------CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-e----cCCC
Q 011126 404 SSSADKTVRLWQVGIDRCLRVFSH--------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y----TDIR 470 (493)
Q Consensus 404 sgs~Dg~V~lWd~~~~~~~~~~~h--------~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~----~~~~ 470 (493)
+|+.|++|+|||++++.++..+.. ...|++++|+| ++++|++|+.||.|+|||+.+++.+. + ..|.
T Consensus 266 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~ 344 (380)
T 3iz6_a 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE 344 (380)
T ss_dssp EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCC
T ss_pred EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCC
Confidence 999999999999999999888752 23489999999 99999999999999999999887663 3 5789
Q ss_pred CCeEEEEEccCCCEEEEeecCCC
Q 011126 471 EIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 471 ~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
..|++++|+|||++|++|+.|++
T Consensus 345 ~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 345 GRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp CCCCEEEECSSSSEEEEECTTSC
T ss_pred CceEEEEECCCCCEEEEeeCCCC
Confidence 99999999999999999998863
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=7.3e-30 Score=254.46 Aligned_cols=260 Identities=17% Similarity=0.189 Sum_probs=200.3
Q ss_pred cccCceeeeeccccccee-----cc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE
Q 011126 226 KKLGAMARIIDRHGSATL-----KP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~f-----sp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L 299 (493)
.....+.+|.+.+.+++| ++ ++.+|++|+.|++|+||++...............+.+|...|++++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 344567788899999998 66 899999999999999999875432211122345678999999999999999999
Q ss_pred EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCc--------eeeeeccCcccc------------------
Q 011126 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ--------LIPIDVDKEKID------------------ 353 (493)
Q Consensus 300 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~------------------ 353 (493)
++|+.|++|++||+.+++.+..+..+...+.++.|.+++... +..++.......
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEEC
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeec
Confidence 999999999999999999999998888888888887665321 222221110000
Q ss_pred ------------ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEEC-CCC
Q 011126 354 ------------KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GID 419 (493)
Q Consensus 354 ------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~-~~~ 419 (493)
....+.++.++.+.+|+.. .+....+.+|...|.+++|+|+| +|++|+.|++|+|||+ ...
T Consensus 172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNTN-----FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp CCCCSCSCCCSSCCEEEEEETTSEEEEEETT-----TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred cccccccccCCCCCEEEEEcCCCEEEEEcCC-----CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 0123445566777777632 34456788999999999999999 9999999999999999 455
Q ss_pred cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE---Eec-----------CCCCCeEEEEEccCCCEE
Q 011126 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYT-----------DIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 420 ~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~---~~~-----------~~~~~I~sv~~spdG~~l 485 (493)
.....+.+...|++++|+| ++.+++++ .|+.|++||+.+++.. .+. +|...|++++|+|+|++|
T Consensus 247 ~~~~~~~~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 247 YPQREFDAGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp SCSEEEECSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred ccceeecCCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 5666666778899999999 88877655 5888999999876532 222 577889999999999999
Q ss_pred EEeecCC
Q 011126 486 QNSACNF 492 (493)
Q Consensus 486 ~s~s~d~ 492 (493)
++|+.|+
T Consensus 325 ~sg~~Dg 331 (343)
T 2xzm_R 325 FAGFTDG 331 (343)
T ss_dssp EEEETTS
T ss_pred EEecCCc
Confidence 9999875
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=2e-29 Score=248.80 Aligned_cols=256 Identities=14% Similarity=0.223 Sum_probs=195.5
Q ss_pred ceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 230 AMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
++.+|.+.|.+++|+|+ +++||+|+.|++|+||++....... ....+.+.+|...|.+++|+|++++|++|+.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 57789999999999998 5899999999999999987654322 22345688999999999999999999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCC--------ceeeeeccCcc------------c---------cceeeee
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLS--------QLIPIDVDKEK------------I---------DKTKSLR 359 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------------~---------~~~~~~~ 359 (493)
++|+.....................+.+.... .+..++..... + .....+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 190 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence 99999888877666655444443333322211 11111111000 0 0111233
Q ss_pred cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcc
Q 011126 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438 (493)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp 438 (493)
++.+..+.+|+.... +.+..+.+|...|++|+|+|++ +|++|+.|++|+|||+++.+++..+.+...|+++.|+|
T Consensus 191 ~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 266 (340)
T 4aow_A 191 CGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 266 (340)
T ss_dssp EETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred EcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC
Confidence 445556666665442 3467788999999999999999 99999999999999999999999999889999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEE----------ecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 439 VDDNYFISGSIDGKVRIWEVRRCQVVD----------YTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 439 ~d~~~l~sgs~Dg~V~IWdl~~~~~~~----------~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
++. +++++.|+.|+|||++++..+. ...|...|++++|+|||++|++|+.|++
T Consensus 267 -~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~ 329 (340)
T 4aow_A 267 -NRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329 (340)
T ss_dssp -SSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred -CCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 665 5566779999999999887652 2357889999999999999999998864
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.97 E-value=1.8e-29 Score=271.47 Aligned_cols=324 Identities=15% Similarity=0.180 Sum_probs=223.4
Q ss_pred ceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhh---
Q 011126 146 ACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK--- 219 (493)
Q Consensus 146 ~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~--- 219 (493)
...++++.+++....-. +|... |..+.. |+.|+....++++. +|.+...+......+.++...
T Consensus 40 ~v~l~~~~~~~~~~~~~----~h~~~--v~~~~~spdg~~lasg~~d~~v~-----lWd~~~~~~~~~~~~~~~~~~v~~ 108 (611)
T 1nr0_A 40 SVYTVPVGSLTDTEIYT----EHSHQ--TTVAKTSPSGYYCASGDVHGNVR-----IWDTTQTTHILKTTIPVFSGPVKD 108 (611)
T ss_dssp EEEEEETTCSSCCEEEC----CCSSC--EEEEEECTTSSEEEEEETTSEEE-----EEESSSTTCCEEEEEECSSSCEEE
T ss_pred EEEEecCCCcccCeEec----CCCCc--eEEEEECCCCcEEEEEeCCCCEE-----EeECCCCcceeeEeecccCCceEE
Confidence 46788888776544211 33333 444433 88899998888877 777643221111111111111
Q ss_pred ---------------------hccccc--cccCceeeeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccc
Q 011126 220 ---------------------VKRGWL--KKLGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLY 275 (493)
Q Consensus 220 ---------------------~k~~w~--~~~~~~~~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~ 275 (493)
....|. .....+.+|...+.+++|+|++. .|++|+.|++|++|+.....
T Consensus 109 v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~------- 181 (611)
T 1nr0_A 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK------- 181 (611)
T ss_dssp EEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-------
T ss_pred EEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-------
Confidence 112232 12334677888889999999997 59999999999999976432
Q ss_pred cceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeee-------ccCCCCceEEEeeCCCCc-------
Q 011126 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD-------VQDTDPSCLYFTINHLSQ------- 341 (493)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~------- 341 (493)
....+.+|.+.|++++|+|+|++||+|+.|++|++||+.+++.+..+. .+...+.++.|.+++...
T Consensus 182 ~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~ 261 (611)
T 1nr0_A 182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 261 (611)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC
Confidence 334678999999999999999999999999999999999998877764 455566666666544211
Q ss_pred -eeeeeccCccccc-------------------eeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-
Q 011126 342 -LIPIDVDKEKIDK-------------------TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400 (493)
Q Consensus 342 -~~~~~~~~~~~~~-------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g- 400 (493)
+..++........ ...+..+.++.+.+|+... .++...+.+|...|++++|+|+|
T Consensus 262 ~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~----~~~~~~~~gh~~~v~~l~~spdg~ 337 (611)
T 1nr0_A 262 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL----GSIDQVRYGHNKAITALSSSADGK 337 (611)
T ss_dssp EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT----TEEEEEECCCSSCEEEEEECTTSS
T ss_pred eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC----CCcceEEcCCCCCEEEEEEeCCCC
Confidence 1111111111000 0011222333444443322 12456678999999999999999
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEe-------------------------------------------------------
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVF------------------------------------------------------- 425 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~------------------------------------------------------- 425 (493)
+|++++.|++|++||+.++.+...+
T Consensus 338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 417 (611)
T 1nr0_A 338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence 9999999999999999876543321
Q ss_pred ----------------------------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCCeEE
Q 011126 426 ----------------------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSA 475 (493)
Q Consensus 426 ----------------------------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~--~~~~~~~~I~s 475 (493)
.|...+++++|+| ++++|++|+.|++|+|||+.++++. ....|...|++
T Consensus 418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~ 496 (611)
T 1nr0_A 418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 496 (611)
T ss_dssp EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEE
T ss_pred EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEE
Confidence 1234578899999 9999999999999999999887542 34678999999
Q ss_pred EEEccCCCEEEEeecCC
Q 011126 476 VCYCPDGKVRQNSACNF 492 (493)
Q Consensus 476 v~~spdG~~l~s~s~d~ 492 (493)
++|+|||++|++++.|.
T Consensus 497 v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 497 VAFSNNGAFLVATDQSR 513 (611)
T ss_dssp EEECTTSSEEEEEETTS
T ss_pred EEECCCCCEEEEEcCCC
Confidence 99999999999998875
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=252.78 Aligned_cols=249 Identities=16% Similarity=0.179 Sum_probs=185.7
Q ss_pred ccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcc----ccccccccceeeecccCCEEEEEEccCCCE
Q 011126 223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS----RELSSLYTGQEFLAHEGSILTMKFSLDGQY 298 (493)
Q Consensus 223 ~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~----~~~~~~~~~~~l~~H~~~I~~l~fspdg~~ 298 (493)
.|........++...+.+++|+|+|++|++++ |+++++|+..... ..............|...|.+++|+|++ +
T Consensus 18 ~w~~~~~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 18 EWNLPPNAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp -----CCSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred ccCCCCCCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 44433344455666778899999999999887 6777777632110 0000011111234577889999999985 6
Q ss_pred EEEEECCCcEEEEecCCCeeeeeee----ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 299 LASGGEDGTVRVWKVIEHERLDGFD----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 299 Lasgs~Dg~V~iWdl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
|++|+.||+|+|||+.+++.+..+. .|...+.++.|.+++ ...+.++.++.+.+|+...
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg----------------~~l~sgs~d~~i~iwd~~~- 158 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG----------------TQAVSGSKDICIKVWDLAQ- 158 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTT-
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC----------------CEEEEEeCCCeEEEEECCC-
Confidence 8899999999999999887654433 344555555554433 2335667788888888764
Q ss_pred eecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeC
Q 011126 375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
.+++..+.+|...|++++|+|++ +|++++.|++|+|||+++++++..+. |...+++++|+|.++++|++|+.
T Consensus 159 ---~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~ 235 (344)
T 4gqb_B 159 ---QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE 235 (344)
T ss_dssp ---TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred ---CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence 34578899999999999999987 78999999999999999999888874 66789999999967789999999
Q ss_pred CCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCC-CEEEEeecCCC
Q 011126 450 DGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KVRQNSACNFC 493 (493)
Q Consensus 450 Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG-~~l~s~s~d~~ 493 (493)
||+|+|||+++++.+ .+..|...|++++|+|+| ++|++++.|++
T Consensus 236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~ 281 (344)
T 4gqb_B 236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS 281 (344)
T ss_dssp TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe
Confidence 999999999988766 578899999999999998 57888887753
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=251.18 Aligned_cols=268 Identities=16% Similarity=0.176 Sum_probs=200.4
Q ss_pred CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeE
Q 011126 180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV 259 (493)
Q Consensus 180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V 259 (493)
|+.|+....++++. +|.+.... +........+|...+.+++|+|++++||+|+.|++|
T Consensus 28 g~~las~~~D~~i~-----iw~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 28 GTLLASCGGDRRIR-----IWGTEGDS-----------------WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp SSCEEEEETTSCEE-----EEEEETTE-----------------EEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCEEEEEcCCCeEE-----EEEcCCCc-----------------ceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 77888888887777 77643221 000111123567778889999999999999999999
Q ss_pred EEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee---eeeeeccCCCCceEEEee
Q 011126 260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER---LDGFDVQDTDPSCLYFTI 336 (493)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~---~~~~~~~~~~~~~~~~~~ 336 (493)
+||+...... .....+.+|...|++++|+|++++|++|+.|++|++||+.++.. +..+..+...+.++.|.+
T Consensus 86 ~iw~~~~~~~-----~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 86 CIWKKNQDDF-----ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp EEEEECCC-E-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred EEEEccCCCe-----EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 9999865432 23346789999999999999999999999999999999987643 344555555555555554
Q ss_pred CCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEE
Q 011126 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ 415 (493)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd 415 (493)
+.. ..+.++.++.+.+|+...... .+...+.+|...|++|+|+|++ +|++++.|++|+|||
T Consensus 161 ~~~----------------~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 161 SQE----------------LLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp SSS----------------CEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCC----------------EEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 432 233455666677775432111 2356788999999999999999 999999999999999
Q ss_pred CCCC---------------cEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe--------EE--EecC
Q 011126 416 VGID---------------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--------VV--DYTD 468 (493)
Q Consensus 416 ~~~~---------------~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~--------~~--~~~~ 468 (493)
.... .++..+. |...|++++|+| ++.+|++++.|+.|++|++.... +. ....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 301 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTS
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc
Confidence 6321 3344443 889999999999 99999999999999999987542 11 2357
Q ss_pred CCCCeEEEEEccCCC-EEEEeecCCC
Q 011126 469 IREIVSAVCYCPDGK-VRQNSACNFC 493 (493)
Q Consensus 469 ~~~~I~sv~~spdG~-~l~s~s~d~~ 493 (493)
|...|++|+|+|++. +|++++.|++
T Consensus 302 h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 302 HSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp SSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred ccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 899999999999985 8889888763
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.97 E-value=4e-29 Score=268.82 Aligned_cols=236 Identities=18% Similarity=0.248 Sum_probs=195.7
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC----
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---- 305 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---- 305 (493)
.+.+|.+.+.+++|+|+|++||+|+.|++|+|||+...... ....+.+|.+.|.+++|+|+|++|++++.+
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----eeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 35567788899999999999999999999999998643321 123578899999999999999999999875
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
+.|++|| .++....+..+...+.++.|.+.... ..+.++.++.+.+|+.... +.+..+.
T Consensus 129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~---------------~l~s~s~D~~v~lwd~~~~----~~~~~l~ 187 (611)
T 1nr0_A 129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPF---------------RIISGSDDNTVAIFEGPPF----KFKSTFG 187 (611)
T ss_dssp EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSC---------------EEEEEETTSCEEEEETTTB----EEEEEEC
T ss_pred eEEEEee--CCCCcceecCCCCCceEEEECCCCCe---------------EEEEEeCCCeEEEEECCCC----eEeeeec
Confidence 4677787 45566667777777777777654422 2456677888888876543 3467789
Q ss_pred cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW 456 (493)
+|...|.+++|+|+| +|++++.|++|+|||+.+++++..+ .|.+.|++++|+| ++++|++++.|++|+||
T Consensus 188 ~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIW 266 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 999999999999999 9999999999999999999998887 5999999999999 99999999999999999
Q ss_pred eCCCCeEEE--------------------------------------------ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 457 EVRRCQVVD--------------------------------------------YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 457 dl~~~~~~~--------------------------------------------~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|+.+++.+. +.+|...|++++|+|||++|++++.|.
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 999876432 246888999999999999999999875
No 22
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=6.3e-30 Score=252.14 Aligned_cols=241 Identities=18% Similarity=0.215 Sum_probs=185.1
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V 308 (493)
+.+|.+.+.+++|+|+|++||+|+.|++|+||++...... ....+.+|.+.|++++|+| ++++|++|+.|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-----~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-----EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-----EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 4568888999999999999999999999999998654321 2346789999999999986 48999999999999
Q ss_pred EEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 309 ~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
+|||+.++. ....+..+...+.++.|.+.....+ .+.++.++.+.+|+...... ......+.+
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~--------------lasgs~D~~i~lwd~~~~~~-~~~~~~~~~ 148 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLI--------------LACGSSDGAISLLTYTGEGQ-WEVKKINNA 148 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSC--------------EEEECSSSCEEEEEECSSSC-EEECCBTTS
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcE--------------EEEEcCCCCEEEEecCCCCC-cceeeeecc
Confidence 999998864 4555666777777888776542222 23455666777776542110 011234567
Q ss_pred CCCCEeEEEEeCC-----------------C-eEEEEeCCCeEEEEECCCC---cEEEEec-CCCcEEEEEEccCCC---
Q 011126 387 HSSEVLDLSWSKN-----------------G-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDD--- 441 (493)
Q Consensus 387 h~~~V~~l~~sp~-----------------g-~l~sgs~Dg~V~lWd~~~~---~~~~~~~-h~~~V~~v~fsp~d~--- 441 (493)
|...|.+++|+|+ + +|++|+.|++|+|||+... .++..+. |...|++++|+| ++
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp-~~~~~ 227 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP-SIGLP 227 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC-CSSCS
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC-CCCCC
Confidence 9999999999997 4 8999999999999999755 3555554 999999999999 65
Q ss_pred -CEEEEEeCCCeEEEEeCCCC---e--EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 442 -NYFISGSIDGKVRIWEVRRC---Q--VVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 442 -~~l~sgs~Dg~V~IWdl~~~---~--~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.+|++|+.||+|+||++.+. + ...+..|...|++++|+|+|++|++++.|+
T Consensus 228 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp CCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred CceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 89999999999999999762 1 122456788999999999999999999876
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=3.4e-29 Score=250.02 Aligned_cols=243 Identities=20% Similarity=0.241 Sum_probs=188.9
Q ss_pred cCceeeeec-ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126 228 LGAMARIID-RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (493)
Q Consensus 228 ~~~~~~~~~-~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (493)
+..+.+|.+ .+..++|+|+|++||+|+.|++|+||++........ .....+|...|++++|+|+|++|++|+.|+
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----SVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----EEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----eeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 344556666 677899999999999999999999999865432111 112368999999999999999999999999
Q ss_pred cEEEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 307 TVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 307 ~V~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
+|+||++..+. .+..+..+...+.++.|.+++. ..+.++.++.+.+|+...... ...+..+
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~----------------~l~s~s~D~~v~iwd~~~~~~-~~~~~~~ 146 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN----------------LLATCSRDKSVWVWEVDEEDE-YECVSVL 146 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEEECTTSC-EEEEEEE
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC----------------EEEEEECCCeEEEEECCCCCC-eEEEEEe
Confidence 99999998764 4566666666666666655431 234556677787776543211 1235667
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE--EEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC--LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~--~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
.+|...|.+++|+|++ +|++++.|++|++||+..+.. ...+. |...|++++|+| ++++|++|+.|++|+|||+..
T Consensus 147 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEEC
T ss_pred cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEecccc
Confidence 8999999999999999 999999999999999987753 34554 999999999999 999999999999999999632
Q ss_pred C---------------eEE-Eec-CCCCCeEEEEEccCCCEEEEeecCC
Q 011126 461 C---------------QVV-DYT-DIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 461 ~---------------~~~-~~~-~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
. +.+ .+. .|...|++++|+|++..|++++.|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence 1 112 233 3788999999999999999998775
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1.7e-28 Score=249.46 Aligned_cols=232 Identities=22% Similarity=0.336 Sum_probs=182.1
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
.+.+++|+|+|++|++|+.|+.|+|||+.... ....+.+|...|++++|+|++++|++|+.|++|++||+.++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~ 197 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence 36679999999999999999999999987543 23457899999999999999999999999999999999999
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc---cceEEEecCCCCEeE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE---KPLHEFQGHSSEVLD 393 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~ 393 (493)
+....+... ..+..+.+.+... ...+.++.++.+.+|+........ .......+|...|.+
T Consensus 198 ~~~~~~~~~-~~v~~~~~~~~~~---------------~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 198 QCSLTLSIE-DGVTTVAVSPGDG---------------KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp EEEEEEECS-SCEEEEEECSTTC---------------CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred eeEEEEEcC-CCcEEEEEECCCC---------------CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence 877666533 2233344433221 223455667778888765432211 111223689999999
Q ss_pred EEEeCCC-eEEEEeCCCeEEEEECCCC------------cEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 394 LSWSKNG-FLLSSSADKTVRLWQVGID------------RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~------------~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
++|+|++ +|++++.|++|+|||++.. .+...+ .|...|++++|+| ++.+|++|+.||.|++||+.
T Consensus 262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECC
Confidence 9999999 9999999999999999753 334444 4999999999999 99999999999999999999
Q ss_pred CCeEE-EecCCCCCeEEEEEcc------CCCEEEEeecCC
Q 011126 460 RCQVV-DYTDIREIVSAVCYCP------DGKVRQNSACNF 492 (493)
Q Consensus 460 ~~~~~-~~~~~~~~I~sv~~sp------dG~~l~s~s~d~ 492 (493)
+++.+ .+.+|...|++++|+| ++++|++++.|+
T Consensus 341 ~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg 380 (393)
T 1erj_A 341 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 380 (393)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred CCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence 98876 5788999999999986 688999999886
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-29 Score=246.83 Aligned_cols=239 Identities=19% Similarity=0.197 Sum_probs=177.7
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
|...+.+++|+|++.+||+|+.|++|+||+................+.+|.+.|++++|+|+|++|++|+.|++|+|||+
T Consensus 57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 66778889999999999999999999999986432211122234567899999999999999999999999999999999
Q ss_pred CCC----eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 314 IEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 314 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
... +.+..+..+...+.++.|.++. ...+.++.++.+.+|+..... .+++..+.+|..
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~----------------~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~ 198 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSE----------------ALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEG 198 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSS----------------SEEEEEETTSCEEEEEEETTE--EEEEEEECCCSS
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCC----------------CEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCC
Confidence 432 3455566666666666665533 123456667778777643211 135678899999
Q ss_pred CEeEEEEeCC--C-eEEEEeCCCeEEEEECCCC--------cEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126 390 EVLDLSWSKN--G-FLLSSSADKTVRLWQVGID--------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (493)
Q Consensus 390 ~V~~l~~sp~--g-~l~sgs~Dg~V~lWd~~~~--------~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW 456 (493)
.|.+++|+|+ + +|++++.|++|+|||+..+ .+...+. |...|++++|+| ++ +|++++.||+|+||
T Consensus 199 ~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~-~l~s~~~dg~v~iw 276 (330)
T 2hes_X 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-NG-LIASVGADGVLAVY 276 (330)
T ss_dssp CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-TS-CEEEEETTSCEEEE
T ss_pred cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-CC-EEEEEeCCCEEEEE
Confidence 9999999998 5 8999999999999998754 3445553 889999999997 54 89999999999999
Q ss_pred eCCCCe--EE-E-ecCCCC-CeEEEEEcc--CCCEEEEeecCC
Q 011126 457 EVRRCQ--VV-D-YTDIRE-IVSAVCYCP--DGKVRQNSACNF 492 (493)
Q Consensus 457 dl~~~~--~~-~-~~~~~~-~I~sv~~sp--dG~~l~s~s~d~ 492 (493)
|+.+++ .+ . ...|.. .|++++|+| ++++|++++.|+
T Consensus 277 ~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 998874 33 2 356776 899999999 789999999886
No 26
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=244.56 Aligned_cols=240 Identities=22% Similarity=0.264 Sum_probs=183.1
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceee-ec-ccCCEEEEEEccCCCEEEEEECC
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LA-HEGSILTMKFSLDGQYLASGGED 305 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l-~~-H~~~I~~l~fspdg~~Lasgs~D 305 (493)
+..+.+|.+.+.+++|+|+ +||+|+.|++|+||++...... ....+ .+ |...|++++|+|++++|++|+.|
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-----LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----EEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----EEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 3456778888999999988 9999999999999998754211 11233 34 99999999999999999999999
Q ss_pred CcEEEEecCC-------CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 306 GTVRVWKVIE-------HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 306 g~V~iWdl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
++|+||++.. .+.+..+..+...+.++.|.+++ ...+.++.++.+.+|+........
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g----------------~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG----------------YYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS----------------CEEEEEETTSCEEEEECCTTCCCC
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC----------------CEEEEEeCCCEEEEEeccCCCCCe
Confidence 9999999853 23444555555555555554432 234566778888888764222222
Q ss_pred cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC--cEEEEec-CCCcEEEEEEccCC--CCEEEEEeCCCe
Q 011126 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVD--DNYFISGSIDGK 452 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~--~~~~~~~-h~~~V~~v~fsp~d--~~~l~sgs~Dg~ 452 (493)
+.+..+.+|...|.+++|+|++ +|++++.|++|+|||+..+ +++..+. |...|++++|+| + +.+|++|+.|++
T Consensus 144 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~ 222 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDST 222 (330)
T ss_dssp EEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSC
T ss_pred EEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCe
Confidence 4467788999999999999999 9999999999999998776 5677775 999999999999 6 678999999999
Q ss_pred EEEEeCCCC--------eEE-EecC-CCCCeEEEEEccCCCEEEEeecCC
Q 011126 453 VRIWEVRRC--------QVV-DYTD-IREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 453 V~IWdl~~~--------~~~-~~~~-~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|+|||+.++ ... .+.. |...|++++|+|++ +|++++.|+
T Consensus 223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg 271 (330)
T 2hes_X 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG 271 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence 999999754 223 2333 88999999999776 777887765
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=2.6e-29 Score=254.25 Aligned_cols=237 Identities=24% Similarity=0.372 Sum_probs=187.4
Q ss_pred CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
..+.+|.+.+.+++|+|++++|++|+.|++|+|||..... ....+.+|...|.+++|+|+|++|++|+.|+.|
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 4567888999999999999999999999999999987543 234578899999999999999999999999999
Q ss_pred EEEecCCCee-------eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126 309 RVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (493)
Q Consensus 309 ~iWdl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (493)
+||++.+... ...+..+...+..+.+.+.. ....+.++.++.+.+|+..... .+
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~---------------~~~l~s~s~D~~i~~wd~~~~~----~~ 193 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ---------------ETRLITGSGDQTCVLWDVTTGQ----RI 193 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS---------------SSCEEEECTTSCEEEECTTTCC----EE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCC---------------CCEEEEECCCCcEEEEEcCCCc----EE
Confidence 9999965421 12222333323332222211 1234677889999999886533 23
Q ss_pred EEE-----ecCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECC-CCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126 382 HEF-----QGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452 (493)
Q Consensus 382 ~~~-----~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~-~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (493)
..+ .+|...|.+++|++ ++ +|++|+.|++|++||++ ...++..+. |...|++++|+| ++++|++|+.||+
T Consensus 194 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~ 272 (380)
T 3iz6_a 194 SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGT 272 (380)
T ss_dssp EEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSC
T ss_pred EEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCe
Confidence 333 57999999999987 55 99999999999999998 456677765 999999999999 9999999999999
Q ss_pred EEEEeCCCCeEEE-ecCC-------CCCeEEEEEccCCCEEEEeecCC
Q 011126 453 VRIWEVRRCQVVD-YTDI-------REIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 453 V~IWdl~~~~~~~-~~~~-------~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|+|||+++++.+. +..+ ...|++++|+|+|++|++|+.|+
T Consensus 273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320 (380)
T ss_dssp EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence 9999999998764 3222 23489999999999999998775
No 28
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-28 Score=240.18 Aligned_cols=254 Identities=11% Similarity=0.120 Sum_probs=205.3
Q ss_pred ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (493)
+...+.+|...+.+++|+|++++|++|+.||.|+||++.... ....+.+|...|++++|+|++++|++++.||
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 96 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADY 96 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTT
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCC
Confidence 334577888999999999999999999999999999987543 2346788999999999999999999999999
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCc-------------eeeeeccCccc---------------------
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ-------------LIPIDVDKEKI--------------------- 352 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~--------------------- 352 (493)
.|++||+.+++.+..+. +...+.++.+.+..... +..++......
T Consensus 97 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred eEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 99999999999888877 44555556555543211 11111111100
Q ss_pred ----------cceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE
Q 011126 353 ----------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC 421 (493)
Q Consensus 353 ----------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~ 421 (493)
.....+.++.++.+.+|+.... .+++..+..|...|.+++|+|++ +|++++.|+.|++||+.++++
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNN---YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTT---TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCC---cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 0112334455666666665431 24567788899999999999999 999999999999999999999
Q ss_pred EEEecCCCcEEEEEEccCCCCEEEEEeCCC--------------eEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEE
Q 011126 422 LRVFSHNNYVTSVAFNPVDDNYFISGSIDG--------------KVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 422 ~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg--------------~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~ 486 (493)
+..+.+...+.+++|+| ++.++++++.++ .|++||+.+++.+ .+..|...|++++|+|+|++|+
T Consensus 253 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 331 (369)
T 3zwl_B 253 LKKYETDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA 331 (369)
T ss_dssp EEEEECSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred eeeecCCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEE
Confidence 99999999999999999 999999999998 8999999998877 4788999999999999999999
Q ss_pred EeecCC
Q 011126 487 NSACNF 492 (493)
Q Consensus 487 s~s~d~ 492 (493)
+++.|+
T Consensus 332 s~~~dg 337 (369)
T 3zwl_B 332 SGGEDG 337 (369)
T ss_dssp EEETTS
T ss_pred EEcCCC
Confidence 999875
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=6.5e-29 Score=249.37 Aligned_cols=248 Identities=16% Similarity=0.211 Sum_probs=180.4
Q ss_pred ccccccccCceeeeecccccceeccCCCeEEeeec------CCeEEEEECCCccccccccccceeeecccCCEEEEEEcc
Q 011126 221 KRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQR------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL 294 (493)
Q Consensus 221 k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp 294 (493)
...|........+|...+.+++|+|||++||+|+. |+.|++|+......... ......+|...|++++|+|
T Consensus 28 ~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~---~~~~~~~~~~~V~~~~~s~ 104 (357)
T 4g56_B 28 GSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES---LCTAGVQTEAGVTDVAWVS 104 (357)
T ss_dssp ------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG---GCSEEEECSSCEEEEEEET
T ss_pred ccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee---EecccCCCCCCEEEEEEcC
Confidence 34565555566788899999999999999999997 78899998765443221 1223567999999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCeeeeeee----ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcC
Q 011126 295 DGQYLASGGEDGTVRVWKVIEHERLDGFD----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (493)
Q Consensus 295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 370 (493)
++. +++++.||+|+|||+.+++...... .+...+.++.+.+++ ...+.++.++.+.+|+
T Consensus 105 d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg----------------~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 105 EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG----------------TQAVSGGKDFSVKVWD 167 (357)
T ss_dssp TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS----------------SEEEEEETTSCEEEEE
T ss_pred CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC----------------CEEEEEeCCCeEEEEE
Confidence 985 5567899999999998877543322 233444555554432 2234566778888887
Q ss_pred CCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEE
Q 011126 371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 371 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~ 445 (493)
.... +.+..+.+|...|++++|+|++ ++++++.|++|+|||+++++++..+. |...+++++|+|..+.+|+
T Consensus 168 ~~~~----~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 168 LSQK----AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp TTTT----EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred CCCC----cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 7643 4577889999999999999987 89999999999999999988776654 7788999999995578999
Q ss_pred EEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCC-CEEEEeecCC
Q 011126 446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KVRQNSACNF 492 (493)
Q Consensus 446 sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG-~~l~s~s~d~ 492 (493)
+|+.|+.|+|||+++++.+ .+..|...|++++|+|+| ++|++++.|.
T Consensus 244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence 9999999999999988765 578899999999999998 5788888775
No 30
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=1.4e-27 Score=234.04 Aligned_cols=236 Identities=20% Similarity=0.337 Sum_probs=196.3
Q ss_pred CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
..+.+|...+.+++|+|++++|++|+.||.|+||+..... ..+.+.+|...|.+++|+|++++|++|+.|+.|
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------cchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 3567788889999999999999999999999999987543 234578899999999999999999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
++||+.+++.+..+..+...+.++.+.+.. ...+.++.++.+.+|+.... +.+..+..|.
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~ 149 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------------NLIVSGSFDESVRIWDVKTG----KCLKTLPAHS 149 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSS----------------SEEEEEETTSCEEEEETTTC----CEEEEECCCS
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCC----------------CEEEEEeCCCcEEEEECCCC----EEEEEecCCC
Confidence 999999999888888777666666665433 12345667778888877643 4467788999
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
..|.+++|+|++ +|++++.|+.|++||+++++++..+. +...+.+++|+| ++++|++++.||.|++||+++++.+.
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 999999999999 99999999999999999999888774 677899999999 99999999999999999999998774
Q ss_pred -ecCCCCC---eEEEEEccCCCEEEEeecCC
Q 011126 466 -YTDIREI---VSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 466 -~~~~~~~---I~sv~~spdG~~l~s~s~d~ 492 (493)
+..|... +......+++++|++++.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence 5555543 33333447889999998775
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.96 E-value=4e-28 Score=257.86 Aligned_cols=231 Identities=25% Similarity=0.363 Sum_probs=192.6
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+..|...+.+++|+|++++|++|+.++.|++|+.... ....+.+|...|++++|+|+|++|++++.|+.|++
T Consensus 340 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC--------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 4456667778999999999999999999999996421 23467889999999999999999999999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
||. +++.+..+..+...+.++.+.++.. ..+..+.++.+.+|+. ..+.+..+.+|...
T Consensus 412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~----------------~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~ 469 (577)
T 2ymu_A 412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQ----------------TIASASDDKTVKLWNR-----NGQLLQTLTGHSSS 469 (577)
T ss_dssp ECT-TCCEEEEEECCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEET-----TSCEEEEEECCSSC
T ss_pred EeC-CCCEEEEecCCCCCeEEEEECCCCC----------------EEEEEcCCCEEEEEEC-----CCCEEEEEcCCCCC
Confidence 995 5667777777766666666654432 2234456677777764 24557788999999
Q ss_pred EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC
Q 011126 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~ 468 (493)
|++++|+|++ +|++++.|++|+|||. +++++..+. |...|++++|+| ++++|++++.||.|+|||+....+..+.+
T Consensus 470 v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~~~~~~~~~~~ 547 (577)
T 2ymu_A 470 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG 547 (577)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTSCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeCCCCEEEEEcC
Confidence 9999999999 9999999999999995 567777775 999999999999 99999999999999999975544556889
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCC
Q 011126 469 IREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 469 ~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
|...|++++|+|||++|++++.|++
T Consensus 548 h~~~v~~~~fs~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 548 HSSSVWGVAFSPDGQTIASASSDKT 572 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 9999999999999999999998875
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=8.8e-28 Score=235.44 Aligned_cols=232 Identities=19% Similarity=0.338 Sum_probs=188.9
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+..|...+.+++|+|++++|++|+.|+.|+||++.... ....+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus 61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i 133 (312)
T 4ery_A 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 34566677889999999999999999999999987543 23467899999999999999999999999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSS 389 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 389 (493)
||+.+++.+..+..+...+.++.+.+++. ..+.++.++.+.+|+..... .+..+ ..|..
T Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~ 193 (312)
T 4ery_A 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGS----------------LIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNP 193 (312)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTTCC----EEEEECCSSCC
T ss_pred EECCCCEEEEEecCCCCcEEEEEEcCCCC----------------EEEEEeCCCcEEEEECCCCc----eeeEEeccCCC
Confidence 99999998888877766666666554331 23455567778888765432 23333 35677
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcE--EEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~- 464 (493)
.+..++|+|++ +|++++.|+.|++||+.+++++..+. |...+ ....|++.++.+|++|+.||.|++||+.+++++
T Consensus 194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence 89999999999 99999999999999999999988886 54432 234455438899999999999999999999877
Q ss_pred EecCCCCCeEEEEEccCCCEEEEee
Q 011126 465 DYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+.+|...|.+++|+|+++++++++
T Consensus 274 ~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 274 KLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEE
T ss_pred hhhccCCcEEEEeecCcCCceEEEE
Confidence 5788999999999999999999887
No 33
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4e-29 Score=251.13 Aligned_cols=236 Identities=11% Similarity=0.090 Sum_probs=181.8
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
+...+.+++|+|++++||+|+.|+.|+||++..... .....+.+|.+.|++++|+|++++|++++.|++|++||+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 345788899999999999999999999999875421 223357789999999999999999999999999999999
Q ss_pred CCCe---eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCC
Q 011126 314 IEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSS 389 (493)
Q Consensus 314 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~ 389 (493)
.+++ ....+..+...+.++.+.++.. ..+.++.++.+.+|+...... ......+.+ |..
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNED----------------KFAVGSGARVISVCYFEQEND-WWVSKHLKRPLRS 147 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSS----------------CCEEEESSSCEEECCC------CCCCEEECSSCCS
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCC----------------EEEEEecCCeEEEEEECCccc-ceeeeEeecccCC
Confidence 8876 4444445555555555544321 223455677788887754321 113556677 999
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECC------------------CCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVG------------------IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~------------------~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D 450 (493)
.|++++|+|++ +|++++.|++|++||+. .++++..+.|...|++++|+| ++++|++++.|
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d 226 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP-SGNALAYAGHD 226 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT-TSSCEEEEETT
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC-CCCEEEEEeCC
Confidence 99999999999 99999999999999985 355666668999999999999 99999999999
Q ss_pred CeEEEEeCCCCeE----E-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 451 GKVRIWEVRRCQV----V-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 451 g~V~IWdl~~~~~----~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|+|+|||+.+++. + .+..|...|++++|+|+|++|++++.+.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 227 SSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp TEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred CcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence 9999999998864 3 5788999999999999999998887553
No 34
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.7e-28 Score=241.55 Aligned_cols=243 Identities=19% Similarity=0.262 Sum_probs=193.5
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECC
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGED 305 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~D 305 (493)
...+.+|...+.+++|+|++++||+|+.||.|+||++..... .....+.+|...|++++|+|+ +++|++|+.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-----eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 345678889999999999999999999999999999864322 233467889999999999987 9999999999
Q ss_pred CcEEEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 306 GTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 306 g~V~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
|.|++||+.+++ .+..+..+...+.++.+.+.... ...+.++.++.+.+|+...... .....
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~d~~i~v~d~~~~~~--~~~~~ 142 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGT--TSPII 142 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCTTSC--CCEEE
T ss_pred CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC--------------CEEEEecCCCcEEEEecCCCCc--eeeEE
Confidence 999999999887 55556556666666666554211 1234456677788887654321 23456
Q ss_pred EecCCCCEeEEEEeC-------------CC-eEEEEeCCCeEEEEECCCCc----EEEEec-CCCcEEEEEEccCC---C
Q 011126 384 FQGHSSEVLDLSWSK-------------NG-FLLSSSADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVD---D 441 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp-------------~g-~l~sgs~Dg~V~lWd~~~~~----~~~~~~-h~~~V~~v~fsp~d---~ 441 (493)
+.+|...|.+++|+| ++ +|++++.|+.|++||++++. ++..+. |...|++++|+| + +
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~ 221 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLR 221 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSS
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCC
Confidence 778999999999999 56 99999999999999998764 333443 899999999999 7 8
Q ss_pred CEEEEEeCCCeEEEEeCCCCe----EE--EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 442 NYFISGSIDGKVRIWEVRRCQ----VV--DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 442 ~~l~sgs~Dg~V~IWdl~~~~----~~--~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++|++++.||.|+|||++++. .. ....+...|++++|+|+|++|++++.|+
T Consensus 222 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 999999999999999999863 22 2445888999999999999999998775
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=3.9e-27 Score=231.60 Aligned_cols=234 Identities=17% Similarity=0.206 Sum_probs=194.2
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee--cccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
.|...+.+++|+|++++|++++ ||.|++|++....... ....+. +|...|.+++|+|++++|++++.||.|++
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS----PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS----CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee----eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 4667888899999999999998 9999999998654221 122233 79999999999999999999999999999
Q ss_pred EecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 311 WKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 311 Wdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
||+.+++ ....+..+...+.++.+.++. ...+.++.++.+.+|+.... +++..+.+|.
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~ 183 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDS----------------KVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHT 183 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTTT----EEEEEECCCS
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCC----------------CEEEEEeCCCcEEEEeCCCC----ceeeeeeccc
Confidence 9998877 444455554445555554432 12234455667778876543 4467788899
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~ 467 (493)
..|.+++|+|++ +|++++.|+.|++||+++++.+..+.+...+.+++|+| ++++|++++.||.|++||+.+++.....
T Consensus 184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 262 (337)
T 1gxr_A 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLH 262 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeEEEc
Confidence 999999999999 99999999999999999999999999999999999999 9999999999999999999999988889
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCC
Q 011126 468 DIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 468 ~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.|...|++++|+|+|++|++++.|+
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCccceeEEEECCCCCEEEEecCCC
Confidence 9999999999999999999998764
No 36
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=8.6e-28 Score=262.14 Aligned_cols=245 Identities=20% Similarity=0.302 Sum_probs=202.2
Q ss_pred cccCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126 226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (493)
...+.+.+|.+.|.+++|+|++ ++|++|+.|++|+||++........ .....+.+|...|++++|+|++++|++|+.
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--VAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--EEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--cccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence 3445678899999999999875 7899999999999999876443211 123467899999999999999999999999
Q ss_pred CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
||+|+|||+.++.....+..|...+.++.+.+++. ..+.++.++.+.+|+....... ......
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~----------------~l~s~s~D~~i~iwd~~~~~~~-~~~~~~ 513 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR----------------QIVSASRDRTIKLWNTLGECKY-TISEGG 513 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS----------------CEEEEETTSCEEEECTTSCEEE-EECSST
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC----------------EEEEEeCCCEEEEEECCCCcce-eeccCC
Confidence 99999999999999888888887777777765442 2345667888888876421110 001112
Q ss_pred ecCCCCEeEEEEeCCC---eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 385 QGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
.+|...|.+++|+|++ .|++++.|++|+|||++++++...+. |...|++++|+| ++++|++|+.||+|+|||+.+
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTT
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC
Confidence 4689999999999986 79999999999999999999988886 999999999999 999999999999999999999
Q ss_pred CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 461 CQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
++.+....+...|++++|+|++.+|++++.
T Consensus 593 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 622 (694)
T 3dm0_A 593 GKKLYSLEANSVIHALCFSPNRYWLCAATE 622 (694)
T ss_dssp TEEEECCBCSSCEEEEEECSSSSEEEEEET
T ss_pred CceEEEecCCCcEEEEEEcCCCcEEEEEcC
Confidence 998876667788999999999999887754
No 37
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=9.2e-27 Score=236.59 Aligned_cols=236 Identities=20% Similarity=0.288 Sum_probs=185.4
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccc------------eeeecccCCEEEEEEccCCCEEE
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSILTMKFSLDGQYLA 300 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~------------~~l~~H~~~I~~l~fspdg~~La 300 (493)
.|...+.+++|+|+|++||+|+ ++.++||++........ +... .....+...|++++|+|+|++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 4778888999999999999986 68999999876543211 0000 00012334599999999999999
Q ss_pred EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (493)
+|+.|++|+|||+.+++.+..+..+...+.++.|.+++. ..+.++.++.+.+|+......
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~----------------~l~s~s~d~~v~iwd~~~~~~---- 199 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD----------------KLVSGSGDRTVRIWDLRTGQC---- 199 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTEE----
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC----------------EEEEecCCCcEEEEECCCCee----
Confidence 999999999999999998888887777777776655432 234566788888887764322
Q ss_pred eEEEecCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEe--------cCCCcEEEEEEccCCCCEEEEEeCC
Q 011126 381 LHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSID 450 (493)
Q Consensus 381 ~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--------~h~~~V~~v~fsp~d~~~l~sgs~D 450 (493)
...+ .+...+.+++|+| ++ +|++|+.|++|++||++++.++..+ .|...|++++|+| ++++|++|+.|
T Consensus 200 ~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d 277 (393)
T 1erj_A 200 SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLD 277 (393)
T ss_dssp EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred EEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCC
Confidence 3333 3567899999999 67 9999999999999999999888776 3889999999999 99999999999
Q ss_pred CeEEEEeCCCCe-------------EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 451 GKVRIWEVRRCQ-------------VVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 451 g~V~IWdl~~~~-------------~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|+|++||+++.. ...+.+|...|++++|+|++++|++++.|+
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence 999999997632 235678999999999999999999999875
No 38
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=2.7e-27 Score=258.26 Aligned_cols=277 Identities=16% Similarity=0.229 Sum_probs=210.1
Q ss_pred hhhhhccccccCC----CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccce
Q 011126 167 EIEIESRLQESGS----SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSAT 242 (493)
Q Consensus 167 ~~~~~~~lr~v~~----~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~ 242 (493)
+|... |..+.+ ++.|.....++++. +|.+..... .+......+.+|...+.+++
T Consensus 380 ~H~~~--V~~v~~~~~~~~~l~s~s~D~~i~-----~W~~~~~~~---------------~~~~~~~~~~~h~~~v~~v~ 437 (694)
T 3dm0_A 380 AHTDM--VTAIATPIDNADIIVSASRDKSII-----LWKLTKDDK---------------AYGVAQRRLTGHSHFVEDVV 437 (694)
T ss_dssp CCSSC--EEEEECCTTCCSEEEEEETTSEEE-----EEECCCSTT---------------CSCEEEEEEECCSSCEEEEE
T ss_pred cCCce--eEEEEecCCCCCEEEEEeCCCcEE-----EEEccCCCc---------------ccccccceecCCCCcEEEEE
Confidence 44444 555544 35677777787777 887653211 01111234667888889999
Q ss_pred eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeee
Q 011126 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF 322 (493)
Q Consensus 243 fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~ 322 (493)
|+|++++|++|+.|++|+|||+.... ....+.+|...|++++|+|++++|++|+.|++|+|||+.........
T Consensus 438 ~s~~g~~l~sgs~Dg~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 438 LSSDGQFALSGSWDGELRLWDLAAGV-------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCc-------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence 99999999999999999999987543 23467899999999999999999999999999999998655433222
Q ss_pred e---ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 323 D---VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 323 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
. .+...+.++.+.++... ...+.++.++.+.+|+.... +....+.+|...|++++|+|+
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~--------------~~l~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spd 572 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQ--------------PTIVSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPD 572 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSS--------------CEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTT
T ss_pred cCCCCCCCcEEEEEEeCCCCc--------------ceEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCC
Confidence 1 22333445555443321 22356677888888887643 346778899999999999999
Q ss_pred C-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCC--------
Q 011126 400 G-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI-------- 469 (493)
Q Consensus 400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~-------- 469 (493)
+ +|++++.|++|+|||+.+++++..+.+...|.+++|+| ++.+|++++ |+.|+|||+.+++++. +..+
T Consensus 573 g~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 650 (694)
T 3dm0_A 573 GSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP-NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKA 650 (694)
T ss_dssp SSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC------
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcC-CCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccc
Confidence 9 99999999999999999999999988888999999999 888877765 5669999999988764 2111
Q ss_pred -----------CCCeEEEEEccCCCEEEEeecCC
Q 011126 470 -----------REIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 470 -----------~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
...+++++|+|||++|++|+.|+
T Consensus 651 ~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp ----------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred cccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 11378999999999999999886
No 39
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=9.6e-27 Score=228.75 Aligned_cols=245 Identities=16% Similarity=0.186 Sum_probs=190.3
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V 308 (493)
+.+|.+.+.+++|+|++++||+|+.||.|+||++....... .....+.+|...|++++|+| ++++|++|+.||.|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW---ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE---EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc---eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 45788889999999999999999999999999998654321 23346789999999999999 69999999999999
Q ss_pred EEEecCCC---------eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeeccc
Q 011126 309 RVWKVIEH---------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (493)
Q Consensus 309 ~iWdl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (493)
++||+.++ +.+..+..+...+.++.+.+.... ...+.++.++.+.+|+.........
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG--------------LKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTCEEEEEECSSTTCTTC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC--------------cEEEEecCCCcEEEecCCChHHhcc
Confidence 99999887 445555555555566665554211 1234455677788887654332111
Q ss_pred c---------eEEEecCCCCEeEEEEeCC---C-eEEEEeCCCeEEEEECCCCcE--EEEec-CCCcEEEEEEccCCC--
Q 011126 380 P---------LHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDRC--LRVFS-HNNYVTSVAFNPVDD-- 441 (493)
Q Consensus 380 ~---------~~~~~~h~~~V~~l~~sp~---g-~l~sgs~Dg~V~lWd~~~~~~--~~~~~-h~~~V~~v~fsp~d~-- 441 (493)
. .....+|...+.+++|+|+ + +|++++.|+.+.+|+...+.. +..+. |...|++++|+| ++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~ 228 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGR 228 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSC
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCC
Confidence 0 0111368889999999997 5 999999999998888887765 44444 899999999999 77
Q ss_pred --CEEEEEeCCCeEEEEeCCCC----------------------------------------------eEE-EecCCCCC
Q 011126 442 --NYFISGSIDGKVRIWEVRRC----------------------------------------------QVV-DYTDIREI 472 (493)
Q Consensus 442 --~~l~sgs~Dg~V~IWdl~~~----------------------------------------------~~~-~~~~~~~~ 472 (493)
++|++|+.||.|++||++.+ +.+ .+..|...
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE 308 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC
T ss_pred cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc
Confidence 89999999999999999864 333 46789999
Q ss_pred eEEEEEccCCCEEEEeecCCC
Q 011126 473 VSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 473 I~sv~~spdG~~l~s~s~d~~ 493 (493)
|++++|+|+|++|++++.|++
T Consensus 309 v~~~~~s~~~~~l~s~~~dg~ 329 (351)
T 3f3f_A 309 VWSVSWNLTGTILSSAGDDGK 329 (351)
T ss_dssp EEEEEECSSSCCEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEecCCCc
Confidence 999999999999999998863
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-28 Score=246.87 Aligned_cols=304 Identities=14% Similarity=0.231 Sum_probs=220.7
Q ss_pred CcceeeeecCCCceeE-EccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhh
Q 011126 144 HAACRIDDWGKGADLV-VSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK 219 (493)
Q Consensus 144 ~~~~~~~~ld~g~~~v-~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~ 219 (493)
+...+|+|++++.... +... +|... +..+.+ ++.|+....++.+. +|.+......
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~---~~~~~--v~~~~~s~~~~~l~~~~~dg~v~-----vw~~~~~~~~----------- 102 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASL---QVDSK--FNDLDWSHNNKIIAGALDNGSLE-----LYSTNEANNA----------- 102 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCC---CCSSC--EEEEEECSSSSCEEEEESSSCEE-----EECCSSTTSC-----------
T ss_pred CCeEEEEEccCCCCCcEEEEE---ecCCc--eEEEEECCCCCeEEEEccCCeEE-----Eeeccccccc-----------
Confidence 3456889988886431 1111 12222 445544 67777777776666 7765442100
Q ss_pred hccccccccCceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCcccccc--ccccceeeecccCCEEEEEEccC-
Q 011126 220 VKRGWLKKLGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELS--SLYTGQEFLAHEGSILTMKFSLD- 295 (493)
Q Consensus 220 ~k~~w~~~~~~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~--~~~~~~~l~~H~~~I~~l~fspd- 295 (493)
......+..|...+.+++|+|+ +.+|++++.|+.|++|++........ .......+.+|...|.+++|+|+
T Consensus 103 -----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (416)
T 2pm9_A 103 -----INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL 177 (416)
T ss_dssp -----CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC
T ss_pred -----ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC
Confidence 0022234557778888999998 89999999999999999987652111 01111234679999999999998
Q ss_pred CCEEEEEECCCcEEEEecCCCeeeeeeecc------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc---eE
Q 011126 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQ------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL---TC 366 (493)
Q Consensus 296 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~ 366 (493)
+.+|++++.||.|++||+.+++.+..+..+ ...+.++.+.+.....++. ++.++ .+
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~---------------~~~d~~~~~i 242 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT---------------ATGSDNDPSI 242 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE---------------EECCSSSCCC
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE---------------EECCCCCceE
Confidence 789999999999999999999988888766 4555666666554332222 22232 55
Q ss_pred EEcCCCceeecccceEEEe-cCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCC-
Q 011126 367 VVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD- 441 (493)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~- 441 (493)
.+|+.... ..++..+. +|...|.+++|+| ++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++
T Consensus 243 ~~~d~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 318 (416)
T 2pm9_A 243 LIWDLRNA---NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAP 318 (416)
T ss_dssp CEEETTST---TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCT
T ss_pred EEEeCCCC---CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCC
Confidence 55554432 13456667 8999999999999 77 99999999999999999999998886 899999999999 77
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEEE-e-----------------------------------cCCCCCeEEEEEccCCCEE
Q 011126 442 NYFISGSIDGKVRIWEVRRCQVVD-Y-----------------------------------TDIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 442 ~~l~sgs~Dg~V~IWdl~~~~~~~-~-----------------------------------~~~~~~I~sv~~spdG~~l 485 (493)
.+|++++.||.|+|||+.+.+... . ..+..++++++|+|||++|
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 398 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLV 398 (416)
T ss_dssp TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEE
T ss_pred CEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEE
Confidence 899999999999999998764221 0 0156778899999999999
Q ss_pred EEeecCC
Q 011126 486 QNSACNF 492 (493)
Q Consensus 486 ~s~s~d~ 492 (493)
++++.|+
T Consensus 399 a~~~~d~ 405 (416)
T 2pm9_A 399 QITPDGK 405 (416)
T ss_dssp CBCTTSS
T ss_pred EEeCCCC
Confidence 9998775
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=2.5e-26 Score=225.74 Aligned_cols=232 Identities=16% Similarity=0.213 Sum_probs=194.6
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
+...+.+++|+|++++|++++.++.|++|++...... ....+..|...|.+++|+|++++|++++.||.|++||+
T Consensus 96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~ 170 (337)
T 1gxr_A 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-----EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-----eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 4566777999999999999999999999999865421 22356789999999999999999999999999999999
Q ss_pred CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 393 (493)
.+++.+..+..+...+.++.+.++.. ..+.++.++.+.+|+...... +.. ..|...+.+
T Consensus 171 ~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~l~~~~~dg~i~~~d~~~~~~----~~~-~~~~~~v~~ 229 (337)
T 1gxr_A 171 HNQTLVRQFQGHTDGASCIDISNDGT----------------KLWTGGLDNTVRSWDLREGRQ----LQQ-HDFTSQIFS 229 (337)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTEE----EEE-EECSSCEEE
T ss_pred CCCceeeeeecccCceEEEEECCCCC----------------EEEEEecCCcEEEEECCCCce----Eee-ecCCCceEE
Confidence 99998888877766666666655331 223445567788887654332 233 347889999
Q ss_pred EEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCC
Q 011126 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI 472 (493)
Q Consensus 394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~ 472 (493)
++|+|++ +|++++.|+.|++||+.+++......|...|++++|+| ++++|++++.||.|++||+.+++.+....+...
T Consensus 230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 308 (337)
T 1gxr_A 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS 308 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEecCCCc
Confidence 9999999 99999999999999999998877777999999999999 999999999999999999999998877778999
Q ss_pred eEEEEEccCCCEEEEeecCC
Q 011126 473 VSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 473 I~sv~~spdG~~l~s~s~d~ 492 (493)
|++++|+|+|++|++++.|+
T Consensus 309 v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 309 VLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp EEEEEECTTSCEEEEEETTS
T ss_pred EEEEEECCCCCEEEEecCCC
Confidence 99999999999999998875
No 42
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=5e-26 Score=233.03 Aligned_cols=247 Identities=19% Similarity=0.298 Sum_probs=188.7
Q ss_pred ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
+.++|+++ ++||+|. |++|+|||..+..... ...+.+|...|++|+|+|+|++||+|+.||+|+|||+.+++.
T Consensus 109 ~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-----~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 109 NLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-----LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp BCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-----EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred eeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-----EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence 44889975 5777774 9999999988654211 113457888999999999999999999999999999999999
Q ss_pred eeeeeccCCCCceEEEeeC------CCCceeeeeccCccc-------------------cceeeeecCCCceEEEcCCCc
Q 011126 319 LDGFDVQDTDPSCLYFTIN------HLSQLIPIDVDKEKI-------------------DKTKSLRKSSDLTCVVLPPKV 373 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-------------------~~~~~~~~s~~~~~~~~~~~~ 373 (493)
+..+..+...+.++.+... ....+...+...... .......+..++.+.+|+...
T Consensus 182 ~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 9888877766555443211 111111111111000 011234455667777777665
Q ss_pred eeecccceEEEecCCCCEeEEEEeCCC--eEEE--EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-
Q 011126 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS--SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS- 448 (493)
Q Consensus 374 ~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~s--gs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs- 448 (493)
......++.....|...|.+++|+|.+ ++++ |+.|++|+|||+.++.++..+.+...+.++.|+| +++.+++++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~-~~~~lv~~sg 340 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHG 340 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEET-TTTEEEEEEC
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecC-CCCeEEEEEe
Confidence 554455677888999999999999987 5555 4589999999999999999999888999999999 888888765
Q ss_pred -CCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 449 -IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 449 -~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
.|+.|+|||+.+++.+ .+.+|...|++++|+|||++|++++.|++
T Consensus 341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387 (420)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 7899999999999877 57899999999999999999999998863
No 43
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.95 E-value=2.2e-26 Score=244.47 Aligned_cols=230 Identities=24% Similarity=0.372 Sum_probs=191.7
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+.+|...+.+++|+|++.+|++++.|+.|++|+..... ...+.+|...|++++|+|+|++|++|+.|+.|++
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 45667777889999999999999999999999976432 2356789999999999999999999999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
|+. +++.+..+..+...+.++.+.++.. ..+.++.++.+.+|+.. .+.+..+.+|...
T Consensus 371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~----------------~l~~~~~d~~v~~~~~~-----~~~~~~~~~~~~~ 428 (577)
T 2ymu_A 371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQ----------------TIASASDDKTVKLWNRN-----GQLLQTLTGHSSS 428 (577)
T ss_dssp EET-TCCEEEEEECCSSCEEEEEECTTSS----------------CEEEEETTSEEEEECTT-----CCEEEEEECCSSC
T ss_pred EcC-CCCEEEEecCCCCCeEEEEECCCCC----------------EEEEEeCCCEEEEEeCC-----CCEEEEecCCCCC
Confidence 995 5677777777776666766655432 12344566777777643 3557788999999
Q ss_pred EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC
Q 011126 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~ 468 (493)
|++++|+|++ +|++++.|++|++||+. ++.+..+ .|...|++++|+| ++++|++++.|++|+|||.....+..+..
T Consensus 429 v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~~~~~~~~~~ 506 (577)
T 2ymu_A 429 VWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG 506 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCCCCEEEEEeC
Confidence 9999999999 99999999999999975 4555555 4999999999999 99999999999999999975555557889
Q ss_pred CCCCeEEEEEccCCCEEEEeecCC
Q 011126 469 IREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 469 ~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|...|++++|+|||++|++++.|+
T Consensus 507 h~~~v~~l~~s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 507 HSSSVRGVAFSPDGQTIASASDDK 530 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCCEEEEEEcCCCCEEEEEECcC
Confidence 999999999999999999998875
No 44
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=1.7e-26 Score=230.62 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=184.3
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
.|...+.+++|+|++++|++|+.++.|+||++..... .....+.+|...|++++|+|++++|++++.||.|++||
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 3567788899999999999999999999999875431 13346789999999999999999999999999999999
Q ss_pred cCCCeeeeeee--ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 313 VIEHERLDGFD--VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 313 l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
+.+++....+. .+...+.++.+.++. . ..+.++.++.+.+|+...............+|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~--------------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 144 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE--K--------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 144 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS--S--------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC--C--------------EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC
Confidence 98887555443 333444455554332 1 12233445556665543221100112233578999
Q ss_pred EeEEEEeCCC-eEEEEeCCCeEEEEEC------------------CCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCC
Q 011126 391 VLDLSWSKNG-FLLSSSADKTVRLWQV------------------GIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID 450 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~------------------~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D 450 (493)
|.+++|+|++ +|++++.|+.|++||+ ..++++..+. |...|++++|+| ++++|++++.|
T Consensus 145 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 223 (372)
T 1k8k_C 145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHD 223 (372)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETT
T ss_pred eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCC
Confidence 9999999999 9999999999999995 4677888884 899999999999 99999999999
Q ss_pred CeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 451 GKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 451 g~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
|.|++||+++++.+ .+..|...|++++|+|+|++++++ .|
T Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 264 (372)
T 1k8k_C 224 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HD 264 (372)
T ss_dssp TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TT
T ss_pred CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eC
Confidence 99999999988776 577888899999999999988887 44
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.3e-27 Score=246.11 Aligned_cols=234 Identities=15% Similarity=0.187 Sum_probs=176.7
Q ss_pred ceeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCc
Q 011126 230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT 307 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~ 307 (493)
....|...|.+++|+| ++.+||+|+.||.|+|||+...... ....+.+|.+.|++|+|+| ++++|++|+.||+
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----EEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 3456677899999999 4679999999999999998755422 1123568999999999998 7899999999999
Q ss_pred EEEEecCCCeeeeeeeccCC--CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 308 VRVWKVIEHERLDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
|+|||+.+.........+.. ...++.+.++. ...+.++.++.+.+|+.. .+.+..+.
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~l~~g~~dg~i~~wd~~-----~~~~~~~~ 247 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS----------------RMVVTGDNVGNVILLNMD-----GKELWNLR 247 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT----------------TEEEEECSSSBEEEEESS-----SCBCCCSB
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCC----------------CEEEEEeCCCcEeeeccC-----cceeEEEe
Confidence 99999977654333322222 22333333322 223456677888888764 34566788
Q ss_pred cCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEe----cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
+|...|++++|+|++ +|++++.|++|+|||+++.+....+ .|...|++++|+| ++.+|++|+.||+|+|||+.
T Consensus 248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESS
T ss_pred cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECC
Confidence 999999999999987 7889999999999999876654433 4899999999999 99999999999999999999
Q ss_pred CCeEE-EecCCCC------CeEEEEEccCCCEEEEeec
Q 011126 460 RCQVV-DYTDIRE------IVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 460 ~~~~~-~~~~~~~------~I~sv~~spdG~~l~s~s~ 490 (493)
+++.. ....|.. .+..+.|+|++.+++++..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
T 4e54_B 327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY 364 (435)
T ss_dssp SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred CCccceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence 87644 3333321 2445678888888777654
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-26 Score=230.65 Aligned_cols=230 Identities=19% Similarity=0.280 Sum_probs=190.6
Q ss_pred eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
..|...+.+++|+|++.+|++|+.||.|+||+.... ....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA--------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 345668888999999999999999999999993321 233577899999999999999999999999999999
Q ss_pred ecCCCeeeeeeeccCCC---------------CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126 312 KVIEHERLDGFDVQDTD---------------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (493)
|+.+++.+..+..+... +.++.+.++ ...+.+..++.+.+|+....
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~i~~~d~~~~-- 237 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-----------------DKFVIPGPKGAIFVYQITEK-- 237 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEET-----------------TEEEEECGGGCEEEEETTCS--
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-----------------CEEEEEcCCCeEEEEEcCCC--
Confidence 99999988887766554 333333221 12345566777888877642
Q ss_pred cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (493)
Q Consensus 377 ~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (493)
+++..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|++++|+| ++ +|++++.||.|+
T Consensus 238 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~ 313 (425)
T 1r5m_A 238 --TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVR 313 (425)
T ss_dssp --SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEE
T ss_pred --ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEE
Confidence 4567788999999999999999 99999999999999999999888886 999999999999 77 999999999999
Q ss_pred EEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 455 IWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 455 IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+||+++++.+. +..|...|++++|+|+|++|++++.|.
T Consensus 314 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 314 LWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence 99999988774 677889999999999999999998775
No 47
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=1.3e-25 Score=219.31 Aligned_cols=246 Identities=19% Similarity=0.284 Sum_probs=187.1
Q ss_pred ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
+.++|++++ +||+| .|++|+|||+.+..... ...+.+|...|++++|+|++++|++|+.||+|++|++.+++.
T Consensus 29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~-----~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQ-----LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEE-----EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEE-----EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 558999886 77776 59999999988654211 112457888999999999999999999999999999999999
Q ss_pred eeeeeccCCCCceEEEeeC------CCCceeeeeccCc------------c-------ccceeeeecCCCceEEEcCCCc
Q 011126 319 LDGFDVQDTDPSCLYFTIN------HLSQLIPIDVDKE------------K-------IDKTKSLRKSSDLTCVVLPPKV 373 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------~-------~~~~~~~~~s~~~~~~~~~~~~ 373 (493)
+..+..+.....+...... ....+........ . ......+.++.++.+.+|+...
T Consensus 102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 8888776654433322110 0001111100000 0 0112335667778888888766
Q ss_pred eeecccceEEEecCCCCEeEEEEeCCC----eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-
Q 011126 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS- 448 (493)
Q Consensus 374 ~~~~~~~~~~~~~h~~~V~~l~~sp~g----~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs- 448 (493)
.............|.+.|.+++++|.+ .+++++.+++|++||...........+...+..+.|+| ++..+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~sg 260 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHG 260 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEET-TTTEEEEEEC
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecc-cccceEEEEE
Confidence 555555667778899999999999976 33567789999999999999998888999999999999 788777654
Q ss_pred -CCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 449 -IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 449 -~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.|+.|+|||+++++++ .+.+|...|++++|+|||++|++++.|+
T Consensus 261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~ 306 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 306 (318)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 7999999999999887 5788999999999999999999999886
No 48
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.6e-26 Score=220.63 Aligned_cols=248 Identities=18% Similarity=0.218 Sum_probs=187.8
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (493)
...+.+|.+.+.+++| |++.+|++|+.||.|+||++.... ....+..|...|.+++|+|++++|++++.||.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-------EEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-------EEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence 3456778888999999 999999999999999999986433 23456789999999999999999999999999
Q ss_pred EEEEecCCC---eeeeeeeccCCCCceEEEee------CCCCceeeee---------ccCccc--------cceeeeecC
Q 011126 308 VRVWKVIEH---ERLDGFDVQDTDPSCLYFTI------NHLSQLIPID---------VDKEKI--------DKTKSLRKS 361 (493)
Q Consensus 308 V~iWdl~~~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---------~~~~~~--------~~~~~~~~s 361 (493)
|++|++... +.+..+..+...+.++.+.. .....+..++ .....+ .....+.++
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence 999998654 44555555555555555411 0011111111 000000 011223444
Q ss_pred CCceEEEcCCCceeecccceEEEec-CCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccC
Q 011126 362 SDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV 439 (493)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~ 439 (493)
.++.+.+|+ ..+....+.. |...|.+++|+|++.+++++.|+.|++||+++++++..+. |...|++++|+|
T Consensus 163 ~d~~i~i~d------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~- 235 (313)
T 3odt_A 163 ADKTIKLWQ------NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP- 235 (313)
T ss_dssp TTSCEEEEE------TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-
T ss_pred CCCCEEEEe------cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-
Confidence 555566665 2345666777 9999999999999999999999999999999999998887 999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 440 d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++ .|++++.||.|++||+.+++.+ .+..|...|++++|+|+|+++ +++.|.
T Consensus 236 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~dg 287 (313)
T 3odt_A 236 NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSDN 287 (313)
T ss_dssp TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETTS
T ss_pred CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCCC
Confidence 77 6899999999999999999877 467788899999999999954 566654
No 49
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=3.1e-26 Score=227.76 Aligned_cols=254 Identities=14% Similarity=0.197 Sum_probs=180.3
Q ss_pred CceeeeecccccceeccC---CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126 229 GAMARIIDRHGSATLKPG---DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp~---g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D 305 (493)
..+..|.+.+.+++|+|+ |.+|++|+.||.|+||++......+ ...+.+|.+.|++++|+|++++|++++.|
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-----PKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----EEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----EEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 355678889999999999 6999999999999999997532221 23578899999999999999999999999
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccce-------------------------eeeec
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT-------------------------KSLRK 360 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~ 360 (493)
|.|++||+.+++.+. +..+...+.++.+.+......+......+.+..+ ..+..
T Consensus 108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVA 186 (368)
T ss_dssp SEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEE
T ss_pred CcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEE
Confidence 999999999988765 4445666677776433333222211111100000 00111
Q ss_pred CCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEeCCC-----eEEEEeCCCeEEEEECCCC---cEEEEec-CCC-
Q 011126 361 SSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGID---RCLRVFS-HNN- 429 (493)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~g-----~l~sgs~Dg~V~lWd~~~~---~~~~~~~-h~~- 429 (493)
..++.+.+|+...... ..... ..+...+.++++.++. .+++++.|+.|++||+... ..+..+. |..
T Consensus 187 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 187 TAERGLIVYQLENQPS---EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EGGGCEEEEECSSSCE---EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred eCCCcEEEEEeccccc---hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 1222233332221110 01111 1233455666666554 3999999999999999887 4455554 443
Q ss_pred -----------cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 430 -----------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 430 -----------~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.|++++|+| ++++|++|+.||.|+|||+.+++.+ .+..|...|++++|+|+|++|++++.|.
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp ----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred cccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 799999999 9999999999999999999999877 4778899999999999999999998764
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=1.9e-26 Score=232.80 Aligned_cols=276 Identities=14% Similarity=0.127 Sum_probs=206.6
Q ss_pred ccccCC-CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccC----C-
Q 011126 174 LQESGS-SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPG----D- 247 (493)
Q Consensus 174 lr~v~~-~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~----g- 247 (493)
|..+.+ .+.|+....++.+. +|.+...+.... ......+..|...+.+++|+|+ +
T Consensus 19 i~~~~~~~~~l~s~~~dg~i~-----iw~~~~~~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 19 IFSVSACNSFTVSCSGDGYLK-----VWDNKLLDNENP--------------KDKSYSHFVHKSGLHHVDVLQAIERDAF 79 (397)
T ss_dssp EEEEEECSSEEEEEETTSEEE-----EEESBCCTTCCG--------------GGGEEEEECCTTCEEEEEEEEEEETTTE
T ss_pred eEEEEecCCeEEEEcCCCEEE-----EEECCCcccccC--------------CCcceEEecCCCcEEEEEEecccccCCc
Confidence 444444 34555565665555 777654321110 1122334566777888999999 9
Q ss_pred --CeEEeeecCCeEEEEECCCccccccccccceeeecc-----cCCEEEEEEc----cCCCE-EEEEECCCcEEEEecCC
Q 011126 248 --HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-----EGSILTMKFS----LDGQY-LASGGEDGTVRVWKVIE 315 (493)
Q Consensus 248 --~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H-----~~~I~~l~fs----pdg~~-Lasgs~Dg~V~iWdl~~ 315 (493)
.+|++++.|+.|++|++....... ......+..| ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 80 ~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 80 ELCLVATTSFSGDLLFYRITREDETK--KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTTC--CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred cccEEEEEcCCCCEEEEEccCCcccc--cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 999999999999999987554211 1113456778 5999999999 99999 99999999999999988
Q ss_pred ------Ceeee-----eee-------ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec
Q 011126 316 ------HERLD-----GFD-------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (493)
Q Consensus 316 ------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (493)
++.+. .+. .+...+.++.+.+.. ..+.++.++.+.+|+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~l~~~~~dg~i~i~d~~~---- 216 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-----------------LIATGFNNGTVQISELST---- 216 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-----------------EEEEECTTSEEEEEETTT----
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-----------------eEEEEeCCCcEEEEECCC----
Confidence 55544 442 234445555544432 334556777888887764
Q ss_pred ccceEEEec---C---CCCEeEEEEeCCC-eEEEEeCC---CeEEEEECCCCcEEEEec--------------CCCcEEE
Q 011126 378 EKPLHEFQG---H---SSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFS--------------HNNYVTS 433 (493)
Q Consensus 378 ~~~~~~~~~---h---~~~V~~l~~sp~g-~l~sgs~D---g~V~lWd~~~~~~~~~~~--------------h~~~V~~ 433 (493)
.+++..+.. | ...|.+++|+|++ +|++++.| +.|++||+++++++..+. |...|++
T Consensus 217 ~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 296 (397)
T 1sq9_A 217 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 296 (397)
T ss_dssp TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE
T ss_pred CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEE
Confidence 345677788 9 9999999999999 99999999 999999999999888885 8899999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec------CC---------------CCCeEEEEEccCC---------
Q 011126 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT------DI---------------REIVSAVCYCPDG--------- 482 (493)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~------~~---------------~~~I~sv~~spdG--------- 482 (493)
++|+| ++++|++++.||.|+|||+.+++.+. +. .| ...|++++|+|+|
T Consensus 297 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 375 (397)
T 1sq9_A 297 LSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL 375 (397)
T ss_dssp EEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred EEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence 99999 99999999999999999999998774 55 56 8999999999999
Q ss_pred -CEEEEeecCC
Q 011126 483 -KVRQNSACNF 492 (493)
Q Consensus 483 -~~l~s~s~d~ 492 (493)
++|++++.|+
T Consensus 376 ~~~l~s~~~dg 386 (397)
T 1sq9_A 376 NESLCCVCLDR 386 (397)
T ss_dssp SCEEEEEETTT
T ss_pred cceEEEecCCC
Confidence 7999998775
No 51
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=1.5e-25 Score=226.34 Aligned_cols=245 Identities=18% Similarity=0.235 Sum_probs=190.0
Q ss_pred ceeeeecccccceecc-CCCeEEeeecCCeEEEEECCCcccccccccc------ceeeecccCCEEEEEEcc-CCCEEEE
Q 011126 230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYT------GQEFLAHEGSILTMKFSL-DGQYLAS 301 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~------~~~l~~H~~~I~~l~fsp-dg~~Las 301 (493)
.+..|.+.+.+++|+| ++++|++|+.||.|+||++............ .....+|...|.+++|+| ++.+|++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 3556788899999999 9999999999999999999865533211000 001136999999999999 7889999
Q ss_pred EECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (493)
Q Consensus 302 gs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (493)
++.||.|++||+.+++....+.. ......+.+.+... .....+.+..++.+.+|+... .+.+
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~d~~~----~~~~ 179 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFNF-EETVYSHHMSPVST-------------KHCLVAVGTRGPKVQLCDLKS----GSCS 179 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSSCS-------------SCCEEEEEESSSSEEEEESSS----SCCC
T ss_pred EeCCCeEEEeeCCCCccceeccC-CCceeeeEeecCCC-------------CCcEEEEEcCCCeEEEEeCCC----ccee
Confidence 99999999999999988777663 23333444433221 112334556667788887654 2456
Q ss_pred EEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-EEEEe----------------cCCCcEEEEEEccCCCC
Q 011126 382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-CLRVF----------------SHNNYVTSVAFNPVDDN 442 (493)
Q Consensus 382 ~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-~~~~~----------------~h~~~V~~v~fsp~d~~ 442 (493)
..+.+|...|.+++|+|++ +|++++.|+.|++||++.+. ++..+ .|...|++++|+| +++
T Consensus 180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 258 (408)
T 4a11_B 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGL 258 (408)
T ss_dssp EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSS
T ss_pred eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCC
Confidence 7788999999999999998 58999999999999998765 33333 3888999999999 999
Q ss_pred EEEEEeCCCeEEEEeCCCCe-----------------------------------------------EE-EecCCCCCeE
Q 011126 443 YFISGSIDGKVRIWEVRRCQ-----------------------------------------------VV-DYTDIREIVS 474 (493)
Q Consensus 443 ~l~sgs~Dg~V~IWdl~~~~-----------------------------------------------~~-~~~~~~~~I~ 474 (493)
+|++++.||.|++||+.+++ .+ .+..|...|+
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 338 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD 338 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEE
Confidence 99999999999999997643 12 3456889999
Q ss_pred EEEEccCCCEEEEeecCCC
Q 011126 475 AVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 475 sv~~spdG~~l~s~s~d~~ 493 (493)
+++|+|+|++|++++.|++
T Consensus 339 ~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 339 CCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp EEEEETTTTEEEEEETTSC
T ss_pred EEEEcCCCCEEEEECCCCe
Confidence 9999999999999998763
No 52
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-26 Score=234.17 Aligned_cols=237 Identities=11% Similarity=0.210 Sum_probs=190.0
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEe
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWK 312 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWd 312 (493)
|...+.+++|+|++.+|++|+.||.|+||++...... ......+.+|...|++++|+|+ +++|++++.||.|++||
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA---INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc---ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 4567778999999999999999999999999763211 1133457789999999999998 89999999999999999
Q ss_pred cCCCe------eeeee---eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 313 VIEHE------RLDGF---DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 313 l~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
+.+++ ....+ ..+...+.++.+.+.... ..+.++.++.+.+|+..... ++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~l~~~~~dg~v~iwd~~~~~----~~~~ 203 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH---------------VFASAGSSNFASIWDLKAKK----EVIH 203 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTT---------------EEEEESSSSCEEEEETTTTE----EEEE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCc---------------EEEEEcCCCCEEEEECCCCC----cceE
Confidence 98876 32222 344555666666554322 23345667778888776532 3455
Q ss_pred EecC------CCCEeEEEEeCCC--eEEEEeCCC---eEEEEECCCC-cEEEEec--CCCcEEEEEEccCCCCEEEEEeC
Q 011126 384 FQGH------SSEVLDLSWSKNG--FLLSSSADK---TVRLWQVGID-RCLRVFS--HNNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 384 ~~~h------~~~V~~l~~sp~g--~l~sgs~Dg---~V~lWd~~~~-~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
+..| ...|.+++|+|++ +|++++.|+ .|++||++++ .++..+. |...|++++|+|.++++|++++.
T Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 283 (416)
T 2pm9_A 204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283 (416)
T ss_dssp ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC
Confidence 5555 7899999999997 899999999 9999999986 5666665 89999999999978899999999
Q ss_pred CCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCC-CEEEEeecCC
Q 011126 450 DGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KVRQNSACNF 492 (493)
Q Consensus 450 Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG-~~l~s~s~d~ 492 (493)
||+|++||+++++.+ .+..|...|++++|+|++ ++|++++.|.
T Consensus 284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence 999999999998877 477899999999999999 8999988775
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=5.9e-26 Score=231.21 Aligned_cols=243 Identities=13% Similarity=0.218 Sum_probs=186.9
Q ss_pred eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
..|...+.+++|+|++++|++|+.|+.|++|++.... ....+.+|...|++++|+|++++|++++.||+|++|
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence 3566778889999999999999999999999987543 334678999999999999999999999999999999
Q ss_pred ecCCCeeeeeeecc---CCCCceEEEeeCCCCce--------eeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126 312 KVIEHERLDGFDVQ---DTDPSCLYFTINHLSQL--------IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 312 dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (493)
|+.+++.+..+..+ ...+..+.+.+.....+ ..+.+.. .....+.++.++.+.+|+..... .
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~----~ 281 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT---YGKYVIAGHVSGVITVHNVFSKE----Q 281 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC---TTEEEEEEETTSCEEEEETTTCC----E
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC---CCCEEEEEcCCCeEEEEECCCCc----e
Confidence 99999988888753 33445555554433221 1111111 12344667778888888876533 2
Q ss_pred eEEE-ecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcE-EEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126 381 LHEF-QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-LRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (493)
Q Consensus 381 ~~~~-~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~-~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (493)
+..+ .+|...|.+++|+|++ +|++++.|+.|++||+++++. +..+. |...|+++.| | ++++|++++.||+|+
T Consensus 282 ~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 282 TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIK 359 (420)
T ss_dssp EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEE
T ss_pred eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEE
Confidence 3333 4688999999999998 899999999999999998754 55554 7788888865 5 678999999999999
Q ss_pred EEeCCCC----------eEEEecCCCCCeEEEEEccCCC---EEEEeec
Q 011126 455 IWEVRRC----------QVVDYTDIREIVSAVCYCPDGK---VRQNSAC 490 (493)
Q Consensus 455 IWdl~~~----------~~~~~~~~~~~I~sv~~spdG~---~l~s~s~ 490 (493)
+|++... .......+...|.+++|+|+|+ .+++.+.
T Consensus 360 iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 360 LDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK 408 (420)
T ss_dssp EEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred EEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence 9998762 2234667888999999999999 4544443
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.1e-27 Score=240.36 Aligned_cols=251 Identities=10% Similarity=0.161 Sum_probs=184.8
Q ss_pred eeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 232 ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 232 ~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
.+|.+.+.+++|+| ++.+||+|+.||+|+||++....... .......+ +|.+.|++|+|+|++++|++|+.||+|++
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 137 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIV 137 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 45667888899999 99999999999999999986522111 11112222 59999999999999999999999999999
Q ss_pred EecC---CCeeeeeeeccCCCCceEEEeeC-CCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 311 WKVI---EHERLDGFDVQDTDPSCLYFTIN-HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 311 Wdl~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
||+. +++....+..+ .+..+.+.+. ....+..+.... .......+.++.++.+.+|+.... +++..+.+
T Consensus 138 wd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~ 210 (437)
T 3gre_A 138 LKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRMRAFV-NEEKSLLVALTNLSRVIIFDIRTL----ERLQIIEN 210 (437)
T ss_dssp EEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEE-CSSCEEEEEEETTSEEEEEETTTC----CEEEEEEC
T ss_pred EEeccccCCceeeccccc--eeEEEEccCcccccCceEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCC----eeeEEEcc
Confidence 9994 55544433322 1111111111 111111111100 011234566777889999987653 44677777
Q ss_pred --CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEccC---CCCEEEEEeCCCeEEEEeC
Q 011126 387 --HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV---DDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 387 --h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~V~~v~fsp~---d~~~l~sgs~Dg~V~IWdl 458 (493)
|...|++++|+|++ +|++|+.|++|++||+++++++..+ .|...|++++|+|. ++.+|++|+.||.|+|||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 89999999999999 9999999999999999999999987 57889999977651 5779999999999999999
Q ss_pred CCCeEEE-ecC--------------------------CCCCeEEEEEccCCCEEEEeecCC
Q 011126 459 RRCQVVD-YTD--------------------------IREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 459 ~~~~~~~-~~~--------------------------~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++++.+. +.. |...|++++|+ ++++|++++.|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~ 350 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS 350 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence 9887653 221 55668999999 788999998775
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=2.4e-25 Score=230.20 Aligned_cols=244 Identities=18% Similarity=0.287 Sum_probs=194.9
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+|.+.+.. ++.+++.+|++|+.||+|++|++.... ....+.+|.+.|++++|+|++ +|++|+.||+|+
T Consensus 116 ~l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~-------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 116 TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred EEcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCc-------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 45566555432 455577899999999999999987543 334578999999999999988 999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCcee----------eeeccCccc---------------------------
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI----------PIDVDKEKI--------------------------- 352 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--------------------------- 352 (493)
+||+.+++.+..+..+...+.++.+.+......+ .++......
T Consensus 187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 9999999999999888888888877764332222 222211110
Q ss_pred ------------cceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC
Q 011126 353 ------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID 419 (493)
Q Consensus 353 ------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~ 419 (493)
.....+.++.++.+.+|+... .+++..+.+|...|.+++|+|++ +|++|+.|++|++||+.++
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCC----CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 011234556677777777654 34577888999999999999998 9999999999999999999
Q ss_pred cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 420 ~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
+++..+. |...|++++|++ .+|++|+.||+|++||+.+++......+...+..++|+|+++++++++
T Consensus 343 ~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec
Confidence 9999986 999999999964 799999999999999999988776566777888999999999999987
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=4.6e-26 Score=230.07 Aligned_cols=246 Identities=13% Similarity=0.087 Sum_probs=194.0
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC----C---CEEE
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----G---QYLA 300 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g---~~La 300 (493)
...+.+|.+.+.+++|+| .+|++|+.||.|+||++...... ........+.+|...|++++|+|+ + ++|+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 344667888999999999 89999999999999999865421 122344567899999999999999 9 9999
Q ss_pred EEECCCcEEEEecCCCee-----eeeeecc-----CCCCceEEEe----eCCCCceeeeeccCccccceeeeecCCCceE
Q 011126 301 SGGEDGTVRVWKVIEHER-----LDGFDVQ-----DTDPSCLYFT----INHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (493)
Q Consensus 301 sgs~Dg~V~iWdl~~~~~-----~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 366 (493)
+++.||.|++|++.+++. ...+..+ ...+.++.+. +.... ..+.++.++.+
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------------~l~~~~~dg~i 150 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH---------------RLVATDVKGTT 150 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE---------------EEEEEETTSCE
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCce---------------EEEEEeCCCcE
Confidence 999999999999988876 6666666 3556666665 33311 12344456667
Q ss_pred EEcCCCc------eeec-ccceEEE-------ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec----C-
Q 011126 367 VVLPPKV------FRLL-EKPLHEF-------QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----H- 427 (493)
Q Consensus 367 ~~~~~~~------~~~~-~~~~~~~-------~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~----h- 427 (493)
.+|+... .... ..+...+ ..|...|.+++|+|+++|++++.|+.|++||+++++++..+. |
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence 7776544 1111 1122255 448999999999998888899999999999999999988886 5
Q ss_pred --CCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCCeEEE-ecC-------------CCCCeEEEEEccCCCEEEEe
Q 011126 428 --NNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD-YTD-------------IREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 428 --~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~~~~~-~~~-------------~~~~I~sv~~spdG~~l~s~ 488 (493)
...|++++|+| ++++|++++.| |.|++||+++++.+. +.. |...|++++|+|+|++|+++
T Consensus 231 ~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 231 NNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred ccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence 89999999999 99999999999 999999999988774 555 89999999999999999999
Q ss_pred ecCC
Q 011126 489 ACNF 492 (493)
Q Consensus 489 s~d~ 492 (493)
+.|+
T Consensus 310 ~~dg 313 (397)
T 1sq9_A 310 GWDG 313 (397)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8775
No 57
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=236.68 Aligned_cols=239 Identities=13% Similarity=0.252 Sum_probs=180.2
Q ss_pred cccccceeccCC--CeEEeeecCCeEEEEECCCcccccc------------------ccc--------------ccee-e
Q 011126 236 DRHGSATLKPGD--HELTLGQRMRRVRVHPVKKQSRELS------------------SLY--------------TGQE-F 280 (493)
Q Consensus 236 ~~~~~~~fsp~g--~~lasgs~dg~V~vwd~~~~~~~~~------------------~~~--------------~~~~-l 280 (493)
..+.+++|+|++ .+|++++.|+.|+||++........ .+. .... .
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 678889999998 7999999999999999875332100 000 0012 3
Q ss_pred ecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC-eeeee-------eeccCCCCceEEEeeCCCCceeeeeccCccc
Q 011126 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERLDG-------FDVQDTDPSCLYFTINHLSQLIPIDVDKEKI 352 (493)
Q Consensus 281 ~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (493)
.+|...|++++|+|++++|++| .|+.|++||+.+. ..+.. +..+...+.++.|.+.+..
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~------------ 240 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN------------ 240 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT------------
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc------------
Confidence 6899999999999999999998 8999999999843 33332 3344444555555544322
Q ss_pred cceeeeecCCCceEEEcCCCceeecccceEEEecCCC------------CEeEEEEeCCC-eEEEEeCCCeEEEEECCC-
Q 011126 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS------------EVLDLSWSKNG-FLLSSSADKTVRLWQVGI- 418 (493)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~- 418 (493)
..+.++.++.+.+|+.+........+..+.+|.. .|.+++|+|++ +|++++. ++|+|||++.
T Consensus 241 ---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 241 ---TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp ---EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC
T ss_pred ---EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC
Confidence 2345566778888887765544444677788876 99999999999 8999998 9999999997
Q ss_pred CcEEEEec-CCCc---------------EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec---------------
Q 011126 419 DRCLRVFS-HNNY---------------VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--------------- 467 (493)
Q Consensus 419 ~~~~~~~~-h~~~---------------V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~--------------- 467 (493)
++++..+. |... +..++|+| ++.+|++|+.||.|+|||+.+++.+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (447)
T 3dw8_B 317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPR 395 (447)
T ss_dssp SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCC
T ss_pred ccccceeeccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCc
Confidence 88887776 4321 33499999 9999999999999999999998876533
Q ss_pred ------------------CCCCCeEEEEEccCCCEEEEeecCC
Q 011126 468 ------------------DIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 468 ------------------~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.+...|..++|+|+|.+|++++.+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 396 KVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp CEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred cccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 3345789999999999999998764
No 58
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=1.3e-25 Score=230.91 Aligned_cols=246 Identities=17% Similarity=0.248 Sum_probs=191.0
Q ss_pred ceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCccccc---cccccceeeecccCCEEEEEEccCCC-EEEEEEC
Q 011126 230 AMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSREL---SSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGE 304 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~---~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~ 304 (493)
....|...+.+++|+|+ +.+||+++.+|.|+||++....... ........+.+|...|++|+|+|++. +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34567788899999997 6899999999999999987532111 11334457889999999999999988 9999999
Q ss_pred CCcEEEEecCCCee-------eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec
Q 011126 305 DGTVRVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (493)
Q Consensus 305 Dg~V~iWdl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (493)
||.|++|++.++.. ...+..+...+.++.|.+.... ..+.++.++.+.+|+.+....
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~---------------~l~s~~~dg~i~i~d~~~~~~- 266 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES---------------LFGSVADDQKLMIWDTRNNNT- 266 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT---------------EEEEEETTSEEEEEETTCSCS-
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC---------------EEEEEeCCCeEEEEECCCCCC-
Confidence 99999999987432 2233344444555555443322 233455677888887764321
Q ss_pred ccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCC-CEEEEEeCCCe
Q 011126 378 EKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDD-NYFISGSIDGK 452 (493)
Q Consensus 378 ~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~-~~l~sgs~Dg~ 452 (493)
.+++..+..|...|++|+|+|++ +|++|+.|++|++||++. ..++..+. |...|++++|+| ++ .+|++++.||.
T Consensus 267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp-~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRR 345 (430)
T ss_dssp SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSC
T ss_pred CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC-CCCCEEEEEeCCCc
Confidence 24567778999999999999988 689999999999999997 56677775 999999999999 66 58999999999
Q ss_pred EEEEeCCC--------------CeEE-EecCCCCCeEEEEEccCCC-EEEEeecCC
Q 011126 453 VRIWEVRR--------------CQVV-DYTDIREIVSAVCYCPDGK-VRQNSACNF 492 (493)
Q Consensus 453 V~IWdl~~--------------~~~~-~~~~~~~~I~sv~~spdG~-~l~s~s~d~ 492 (493)
|+|||+.. .+++ ....|...|++++|+|+++ +|++++.|+
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence 99999987 2343 5678899999999999999 777777664
No 59
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.2e-25 Score=228.59 Aligned_cols=229 Identities=16% Similarity=0.261 Sum_probs=189.5
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
+...+.+++|+|++.+|++|+.||.|+||++.... ....+.+|...|.+++| ++++|++|+.||.|++||+
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEec
Confidence 34567779999999999999999999999987543 23457789999999999 4679999999999999999
Q ss_pred C-CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 314 I-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 314 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
. ....+..+..+...+.++.+.++. ...+.++.++.+.+|+... .+++..+.+|...|.
T Consensus 204 ~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~v~ 263 (401)
T 4aez_A 204 RIANHQIGTLQGHSSEVCGLAWRSDG----------------LQLASGGNDNVVQIWDARS----SIPKFTKTNHNAAVK 263 (401)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTC----SSEEEEECCCSSCCC
T ss_pred ccCcceeeEEcCCCCCeeEEEEcCCC----------------CEEEEEeCCCeEEEccCCC----CCccEEecCCcceEE
Confidence 8 455566666666666666665532 1234456677888887764 345677889999999
Q ss_pred EEEEeCCC--eEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE--eCCCeEEEEeCCCCeEE--
Q 011126 393 DLSWSKNG--FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG--SIDGKVRIWEVRRCQVV-- 464 (493)
Q Consensus 393 ~l~~sp~g--~l~sgs--~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg--s~Dg~V~IWdl~~~~~~-- 464 (493)
+++|+|++ ++++++ .|+.|++||+.+++++..+.+...|++++|+| ++.+|+++ +.||.|+|||+.+++..
T Consensus 264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeE
Confidence 99999987 677765 79999999999999999999999999999999 99999994 48999999999987654
Q ss_pred -EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 465 -DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 465 -~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.+..|...|++++|+|+|++|++++.|+
T Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 343 VDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp EEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 3678999999999999999999999875
No 60
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=5e-26 Score=229.06 Aligned_cols=224 Identities=10% Similarity=0.075 Sum_probs=164.1
Q ss_pred eEEeeecCCeEEEEECCCccccccccccc--eeeecccCCEEEEEEccCCCEEEEEE--CCCcEEEEecCCCeeeeeeec
Q 011126 249 ELTLGQRMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGG--EDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 249 ~lasgs~dg~V~vwd~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~Lasgs--~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
.|++|+.|+.+++|++......+...... .....+...+.+++|+|||++|++++ .|++|+|||+.+++.+..+.
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~- 174 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE- 174 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-
T ss_pred EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-
Confidence 44455678899999986554333221111 12234566799999999999987554 78999999999999888876
Q ss_pred cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE
Q 011126 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~ 403 (493)
+...+..+.|.+++.. + +..+.+..+++|....... ......+|...|.+++|+|++ +++
T Consensus 175 ~~~~V~~v~fspdg~~--l--------------~s~s~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 175 TRGEVKDLHFSTDGKV--V--------------AYITGSSLEVISTVTGSCI---ARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp CSSCCCEEEECTTSSE--E--------------EEECSSCEEEEETTTCCEE---EEECCCCTTEEEEEEEEEETTEEEE
T ss_pred CCCceEEEEEccCCce--E--------------EeccceeEEEEEeccCcce---eeeecCCCCCCEEEEEEcCCCCEEE
Confidence 4456777777665421 1 1222233333333221111 112345688899999999999 899
Q ss_pred EEeCCC----eEEEEECCCCcEE----EEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCC
Q 011126 404 SSSADK----TVRLWQVGIDRCL----RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREI 472 (493)
Q Consensus 404 sgs~Dg----~V~lWd~~~~~~~----~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~ 472 (493)
+++.|+ ++++|++...... ..+ .|...|++++|+| ++++||+|+.|++|+|||+.+++++. ..+|...
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~ 314 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA 314 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC
T ss_pred EEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC
Confidence 998887 6889998766542 222 3889999999999 99999999999999999999999874 3679999
Q ss_pred eEEEEEccCCCEEEEeecCCC
Q 011126 473 VSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 473 I~sv~~spdG~~l~s~s~d~~ 493 (493)
|++|+|+|||++|++++.|++
T Consensus 315 V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSE
T ss_pred EEEEEECCCCCEEEEEeCCCe
Confidence 999999999999999998864
No 61
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.7e-26 Score=252.66 Aligned_cols=241 Identities=20% Similarity=0.270 Sum_probs=192.8
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECCCc
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGT 307 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~ 307 (493)
.+.+|.+.+.+++|+|++++|++|+.||.|+||++..... .....+.+|.+.|++++|+|+ +++|++|+.||+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-----~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-----ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 3567888999999999999999999999999999864322 233467899999999999988 999999999999
Q ss_pred EEEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 308 VRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 308 V~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
|++||+.+++ .+..+..+...+.++.+.+.... ...+.++.++.+.+|+...... .....+.
T Consensus 79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~--------------~~l~sgs~dg~I~vwdl~~~~~--~~~~~~~ 142 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGT--TSPIIID 142 (753)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCSSSC--CCCEEEE
T ss_pred EEEEECCCCcccccccccCCCCCeEEEEECCCCCC--------------CEEEEEeCCCcEEEEEeecCCC--cceeEee
Confidence 9999999887 55566666666666666654211 2234556777888887754322 2345678
Q ss_pred cCCCCEeEEEEeCC-------------C-eEEEEeCCCeEEEEECCCC----cEEEEec-CCCcEEEEEEccCC---CCE
Q 011126 386 GHSSEVLDLSWSKN-------------G-FLLSSSADKTVRLWQVGID----RCLRVFS-HNNYVTSVAFNPVD---DNY 443 (493)
Q Consensus 386 ~h~~~V~~l~~sp~-------------g-~l~sgs~Dg~V~lWd~~~~----~~~~~~~-h~~~V~~v~fsp~d---~~~ 443 (493)
+|...|.+++|+|. + +|++|+.||+|++||++++ .++..+. |...|++++|+| + +.+
T Consensus 143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~~~ 221 (753)
T 3jro_A 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSY 221 (753)
T ss_dssp CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEE
T ss_pred cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-CCCCCCE
Confidence 89999999999993 6 9999999999999999876 4444554 899999999999 7 899
Q ss_pred EEEEeCCCeEEEEeCCCCe------EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 444 FISGSIDGKVRIWEVRRCQ------VVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 444 l~sgs~Dg~V~IWdl~~~~------~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|++|+.||.|++||+.+++ ......|...|++++|+|+|+++++++.|+
T Consensus 222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 9999999999999999863 223556888999999999999999998875
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-26 Score=243.69 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=166.4
Q ss_pred ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC------CCEEEEEECCCcEEEEecCCCe
Q 011126 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
+|++..+++++.|++|+||++....... ...+.+.+|.+.|+.|+|+|+ +.+||+++.||+|+|||+.++.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp ------------CEEEEEEEEETTTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 3444455556788999999986543211 112346778899999999996 5799999999999999997764
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE--E
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL--S 395 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~ 395 (493)
...........+ ......+...+..+.+... ...+.++.++.+.+|+.... ..+...+.+|...|++| +
T Consensus 247 ~~~~~~~~~~~p--~~~l~~h~~~v~sv~~s~~----~~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~ 317 (524)
T 2j04_B 247 TDVHVFKMCEKP--SLTLSLADSLITTFDFLSP----TTVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTA 317 (524)
T ss_dssp SSSSEEECCCSC--SEEECCTTTCEEEEEESSS----SEEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEE
T ss_pred cccccceeecCc--eEEEEcCCCCEEEEEecCC----CeEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEE
Confidence 321000000000 0001112233444444322 14567888999999988643 23566788999999999 5
Q ss_pred EeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CC--CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCC
Q 011126 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI 469 (493)
Q Consensus 396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~ 469 (493)
|+|++ +|+|++.|++|+|||+++++++..+. |. ..|.+++|+| ++..|++++.|++|++||++++..+ .+.+|
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence 78875 88999999999999999988776654 43 3588999999 8999999999999999999988753 57789
Q ss_pred CCCeEEEEEccCCCEEEEeecCC
Q 011126 470 REIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 470 ~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
...|++|+|+|+|++|++|+.|+
T Consensus 397 ~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 397 ETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp SSCEEEEECCSSCCBCEEEETTT
T ss_pred CCceEEEEeCCCCCeEEEEECCC
Confidence 99999999999999999999886
No 63
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=2.7e-26 Score=228.23 Aligned_cols=232 Identities=15% Similarity=0.209 Sum_probs=183.7
Q ss_pred cccccceeccC----CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEE
Q 011126 236 DRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRV 310 (493)
Q Consensus 236 ~~~~~~~fsp~----g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~i 310 (493)
..+.+++|+|+ +.+|++|+.||.|+||++.... ....+.+|...|++++|+| ++++|++|+.||.|++
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i 142 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 142 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 55677999999 6799999999999999987543 2345788999999999999 9999999999999999
Q ss_pred EecCCCeeeeee---eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec----------
Q 011126 311 WKVIEHERLDGF---DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL---------- 377 (493)
Q Consensus 311 Wdl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---------- 377 (493)
||+.+++.+..+ ..+...+.++.+.++.. ..+.++.++.+.+|+.......
T Consensus 143 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 206 (366)
T 3k26_A 143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE----------------KIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 206 (366)
T ss_dssp EETTTTEEEEEECSTTSCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEESCSHHHHHHHHHHHTCC
T ss_pred EEeecCeEEEEecccccccCceeEEEECCCCC----------------EEEEecCCCCEEEEECCCCccccccceeEEec
Confidence 999999888777 45555566666554331 2234455666777766532211
Q ss_pred --------------ccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcE--------------EEEec-CC
Q 011126 378 --------------EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC--------------LRVFS-HN 428 (493)
Q Consensus 378 --------------~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~--------------~~~~~-h~ 428 (493)
........+|...|.+++|+ ..+|++++.|+.|++||+.+... +..+. |.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (366)
T 3k26_A 207 PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 285 (366)
T ss_dssp GGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred CCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence 11233445699999999999 33999999999999999987643 55554 88
Q ss_pred CcEEEEEEccCC--CCEEEEEeCCCeEEEEeCCCCe-----EEEecCC--CCCeEEEEEccCCCEEEEeecCC
Q 011126 429 NYVTSVAFNPVD--DNYFISGSIDGKVRIWEVRRCQ-----VVDYTDI--REIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 429 ~~V~~v~fsp~d--~~~l~sgs~Dg~V~IWdl~~~~-----~~~~~~~--~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
..|++++|+| + +++|++|+.||.|++||+.+++ ...+..| ...|++++|+|+|++|++++.|+
T Consensus 286 ~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 286 CDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp CCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence 8999999999 8 9999999999999999999874 2245666 78999999999999999999875
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=2e-25 Score=258.47 Aligned_cols=236 Identities=20% Similarity=0.281 Sum_probs=202.2
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+.+|.+.+.+++|+|+|++||+|+.||+|+||+..+.. ....+.+|.+.|.+++|+|++++|++|+.||+|+|
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-------KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 45678888999999999999999999999999987554 23457899999999999999999999999999999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
||+.+++.+..+..+...+.++.|.+..... ..+.++.++.+.+|+.... +.+..+.+|...
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~l~sg~~d~~v~vwd~~~~----~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHL--------------LLATGSNDFFLKLWDLNQK----ECRNTMFGHTNS 745 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCC--------------EEEEEETTSCEEEEETTSS----SEEEEECCCSSC
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCce--------------EEEEEeCCCeEEEEECCCc----chhheecCCCCC
Confidence 9999999999998888877777776654332 2345566778888877543 456778899999
Q ss_pred EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--------------------------------------------
Q 011126 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-------------------------------------------- 425 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-------------------------------------------- 425 (493)
|++++|+|++ +|++++.|++|++||+.++.....+
T Consensus 746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d 825 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825 (1249)
T ss_dssp EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 9999999999 9999999999999998766543322
Q ss_pred ------------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 426 ------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 426 ------------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.|...|++++|+| ++.++++++.||.|++||+.+++.+ .+..|...|++++|+|+|+++++++.|+
T Consensus 826 ~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg 904 (1249)
T 3sfz_A 826 IHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904 (1249)
T ss_dssp TTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence 3677899999999 9999999999999999999998877 5788999999999999999999999875
No 65
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-25 Score=227.15 Aligned_cols=234 Identities=16% Similarity=0.169 Sum_probs=192.1
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCC---------------EEEEEEccC
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS---------------ILTMKFSLD 295 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~---------------I~~l~fspd 295 (493)
+..|...+.+++|+|++.+|++++.|+.|++|++..... .+.+..|... |.++.|+|+
T Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (425)
T 1r5m_A 145 LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-------MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217 (425)
T ss_dssp ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-------EEEECCC---------------CCCBSCCEEEET
T ss_pred ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-------EEEeeccccCccceeeccccCCcceeeEEEEcCC
Confidence 345667788899999999999999999999999975432 2234455555 999999998
Q ss_pred CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (493)
Q Consensus 296 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (493)
+ .+++++.||.|++||+.+++.+..+..+...+.++.+.++.. ..+.++.++.+.+|+....
T Consensus 218 ~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~l~~~~~d~~i~i~d~~~~- 279 (425)
T 1r5m_A 218 D-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK----------------LLLSASDDGTLRIWHGGNG- 279 (425)
T ss_dssp T-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT----------------EEEEEETTSCEEEECSSSB-
T ss_pred C-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC----------------EEEEEcCCCEEEEEECCCC-
Confidence 5 588999999999999999888877777766666666655432 2234456677888876643
Q ss_pred ecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126 376 LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (493)
Q Consensus 376 ~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (493)
+++..+.+|...|.+++|+|+++|++++.|+.|++||+.+++++..+. |...|++++|+| ++++|++++.||.|+
T Consensus 280 ---~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 280 ---NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVN 355 (425)
T ss_dssp ---SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred ---ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEE
Confidence 456778889999999999999999999999999999999999988886 889999999999 999999999999999
Q ss_pred EEeCCCCe--------------------EE-EecCCCC--CeEEEEEccCCCEEEEeecCCC
Q 011126 455 IWEVRRCQ--------------------VV-DYTDIRE--IVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 455 IWdl~~~~--------------------~~-~~~~~~~--~I~sv~~spdG~~l~s~s~d~~ 493 (493)
|||+.+++ ++ .+..|.. .|++++|+|+|++|++++.|++
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 417 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE 417 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce
Confidence 99999877 55 4677765 9999999999999999988763
No 66
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=9.9e-26 Score=227.19 Aligned_cols=209 Identities=15% Similarity=0.213 Sum_probs=168.6
Q ss_pred cCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECC
Q 011126 228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGED 305 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~D 305 (493)
...+..|...+.+++|+|++ ++|++|+.||.|+||++........ ..+.+|...|.+++|+| ++++|++++.|
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----IQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----ECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----eecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 33566788889999999999 9999999999999999985542211 12347999999999999 78999999999
Q ss_pred CcEEEEecCCCeeeeeeeccC---CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126 306 GTVRVWKVIEHERLDGFDVQD---TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
+.|++||+.+ ..+..+..+. ..+.++.+.++.. ..+.++.++.+.+|+.. .+++.
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~i~d~~-----~~~~~ 198 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ----------------MLATGDSTGRLLLLGLD-----GHEIF 198 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT----------------EEEEEETTSEEEEEETT-----SCEEE
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC----------------EEEEECCCCCEEEEECC-----CCEEE
Confidence 9999999986 4444444332 3344455544321 23455667788888763 45678
Q ss_pred EEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC----CcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI----DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (493)
Q Consensus 383 ~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~----~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW 456 (493)
.+.+|...|.+++|+|++ +|++++.|++|++||+++ +.++..+.|...|++++|+|.++.+|++++.|+.|+||
T Consensus 199 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iw 278 (383)
T 3ei3_B 199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 278 (383)
T ss_dssp EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEE
T ss_pred EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEE
Confidence 889999999999999998 799999999999999998 77888889999999999999778999999999999999
Q ss_pred eCCCCeE
Q 011126 457 EVRRCQV 463 (493)
Q Consensus 457 dl~~~~~ 463 (493)
|+++++.
T Consensus 279 d~~~~~~ 285 (383)
T 3ei3_B 279 SSYDWSK 285 (383)
T ss_dssp ETTBTTS
T ss_pred ECCCCcc
Confidence 9997654
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=1.9e-25 Score=246.98 Aligned_cols=238 Identities=18% Similarity=0.236 Sum_probs=201.9
Q ss_pred CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
..+.+|.+.+.+++|+|++.+||+|+.+|.|+||++.... ..+.+.+|.+.|++++|+|++++|++|+.||.|
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence 3567888999999999999999999999999999987543 334678899999999999999999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (493)
+|||+.+++.+..+..+...+.++.|.+++. ..+.++.++.+.+|+.... ......+.+|.
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~----------------~l~~~~~dg~i~vw~~~~~---~~~~~~~~~~~ 140 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP----------------YVLSGSDDLTVKLWNWENN---WALEQTFEGHE 140 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSS----------------EEEEEETTSEEEEEEGGGT---SEEEEEEECCS
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCC----------------EEEEEcCCCEEEEEECCCC---ceEEEEEcCCC
Confidence 9999999999988888877777777766542 1234556777888765432 13456788999
Q ss_pred CCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccC-CCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 389 SEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 389 ~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
..|.+++|+| ++ .|++++.|++|++||+..+.....+. +...+++++|+|. ++.+|++|+.||.|++||+.+++.
T Consensus 141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 9999999999 66 99999999999999999887777665 4588999999983 678999999999999999999887
Q ss_pred EE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 464 VD-YTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 464 ~~-~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+. +..|...|++++|+|+|+++++++.|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDG 250 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 74 677899999999999999999998775
No 68
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=8.6e-26 Score=229.59 Aligned_cols=239 Identities=17% Similarity=0.191 Sum_probs=188.9
Q ss_pred Cceeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCC
Q 011126 229 GAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDG 306 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg 306 (493)
..+.+|...+.+++|+| ++.+|++|+.||.|+||++...............+.+|...|++++|+|++ .+|++|+.||
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 34566788889999999 999999999999999999986643222223455788999999999999998 6999999999
Q ss_pred cEEEEecCCCeeeeee--eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 307 TVRVWKVIEHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
.|+|||+.+++.+..+ ..+...+.++.+.+++. ..+.++.++.+.+|+.+.. +.+..+
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~~----~~~~~~ 214 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA----------------LICTSCRDKRVRVIEPRKG----TVVAEK 214 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS----------------CEEEEETTSEEEEEETTTT----EEEEEE
T ss_pred EEEEEECCCCCccEEEecCCCCCceEEEEECCCCC----------------EEEEEecCCcEEEEeCCCC----ceeeee
Confidence 9999999999988888 55666666666655332 2234556778888887653 345666
Q ss_pred -ecCCCC-EeEEEEeCCC-eEEEE---eCCCeEEEEECCCCcE---EEEecCCCcEEEEEEccCCCCEEE-EEeCCCeEE
Q 011126 385 -QGHSSE-VLDLSWSKNG-FLLSS---SADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVR 454 (493)
Q Consensus 385 -~~h~~~-V~~l~~sp~g-~l~sg---s~Dg~V~lWd~~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~-sgs~Dg~V~ 454 (493)
.+|.+. +.+++|+|++ +|++| +.|+.|++||+++... ...+.|...|.+++|+| ++++|+ +|+.||.|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~g~~dg~i~ 293 (402)
T 2aq5_A 215 DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP-DTNIVYLCGKGDSSIR 293 (402)
T ss_dssp ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET-TTTEEEEEETTCSCEE
T ss_pred ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC-CCCEEEEEEcCCCeEE
Confidence 678776 8999999999 88888 7999999999998654 33445888999999999 888886 555799999
Q ss_pred EEeCCCCe--EE--EecCCCCCeEEEEEccCCCEEEEe
Q 011126 455 IWEVRRCQ--VV--DYTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 455 IWdl~~~~--~~--~~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
+||+.+++ +. ....+...|++++|+|++.+++++
T Consensus 294 i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~ 331 (402)
T 2aq5_A 294 YFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK 331 (402)
T ss_dssp EEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred EEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence 99999877 33 233366899999999999887643
No 69
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.94 E-value=5.9e-25 Score=220.15 Aligned_cols=201 Identities=22% Similarity=0.351 Sum_probs=170.0
Q ss_pred ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (493)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (493)
..++.+|.+.|++++|+|++++|+||+.||+|+|||..+++....+..+...+.++.+.+.+. .
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~----------------~ 120 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC----------------A 120 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS----------------E
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC----------------E
Confidence 356889999999999999999999999999999999999988888887777777777766542 2
Q ss_pred eeecCCCceEEEcCCCcee--ecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEE
Q 011126 357 SLRKSSDLTCVVLPPKVFR--LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT 432 (493)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~ 432 (493)
.+.++.++.+.+|+..... ........+.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+. |...|.
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL 200 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE
Confidence 3455666777777553221 1123456778899999999999999 99999999999999999999998886 999999
Q ss_pred EEEEccC-CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126 433 SVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 433 ~v~fsp~-d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
+++|+|. ++++|++|+.||+|++||+++++.+ .+..|...|++++|+|+|.+|++++.|.+
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence 9999883 3689999999999999999999877 47789999999999999999999998763
No 70
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=4.7e-26 Score=233.72 Aligned_cols=253 Identities=15% Similarity=0.222 Sum_probs=177.0
Q ss_pred eecccccceeccCCCeEEeeecCCeEEEEECCCccc----cccccccceeeeccc------------CCEEEEEEccCC-
Q 011126 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR----ELSSLYTGQEFLAHE------------GSILTMKFSLDG- 296 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~----~~~~~~~~~~l~~H~------------~~I~~l~fspdg- 296 (493)
+.+.+.+++|+|+|.+||+|+.||.|+||++..... ..........+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 356788899999999999999999999999886542 111222345688998 889999999998
Q ss_pred -CEEEEEECCCcEEEEecCCCeeeeeeeccCC--------------CCc------------e-EEEeeCCCCceeeeecc
Q 011126 297 -QYLASGGEDGTVRVWKVIEHERLDGFDVQDT--------------DPS------------C-LYFTINHLSQLIPIDVD 348 (493)
Q Consensus 297 -~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~--------------~~~------------~-~~~~~~~~~~~~~~~~~ 348 (493)
.+|++++.|++|++||+.++........... ... . ..+...+...+..+.+.
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 7999999999999999976554211000000 000 0 01111223333333333
Q ss_pred CccccceeeeecCCCceEEEcCCCceeecccc----eEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcE-
Q 011126 349 KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP----LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC- 421 (493)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~- 421 (493)
... ...+.+ .++.+.+|+.......... ...+.+|...|++++|+|++ +|++|+.|++|++||++++..
T Consensus 187 ~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 187 SDY---ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp TTS---SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred CCC---CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 321 122334 5888888887632211000 01356899999999999986 999999999999999999886
Q ss_pred ---EEEec-CCC------------cEEEEEEccCCCCEEEEEeCCCeEEEEeCCC-CeEE-EecCCCCC-----------
Q 011126 422 ---LRVFS-HNN------------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVV-DYTDIREI----------- 472 (493)
Q Consensus 422 ---~~~~~-h~~------------~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~-~~~~-~~~~~~~~----------- 472 (493)
+..+. |.. .|++++|+| ++++|++++. +.|+|||+++ ++.+ .+..|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 66665 554 899999999 9999999999 9999999997 6655 34444321
Q ss_pred ----eEEEEEccCCCEEEEeecCC
Q 011126 473 ----VSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 473 ----I~sv~~spdG~~l~s~s~d~ 492 (493)
+..++|+|+|++|++++.|+
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg 364 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNN 364 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTT
T ss_pred ccccceEEEECCCCCEEEEeccCC
Confidence 33599999999999998875
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=2.5e-25 Score=219.73 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=189.5
Q ss_pred eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EEEEEECCCcEEE
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRV 310 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~i 310 (493)
..|.+.+.+++|+|++.+|++++.|+.|+||++....... ....+.+|...|++++|+|+++ +|++|+.||.|++
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc----cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 3577888899999999999999999999999987554211 1234568999999999999999 9999999999999
Q ss_pred Eec-CCCeeeeeeec--cCCCCceEEEeeCCCCceeee---------eccC---------ccccc---------------
Q 011126 311 WKV-IEHERLDGFDV--QDTDPSCLYFTINHLSQLIPI---------DVDK---------EKIDK--------------- 354 (493)
Q Consensus 311 Wdl-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~---------~~~~~--------------- 354 (493)
||+ .+++. ..+.. +...+.++.+.+ ...++.. +... .....
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence 999 77754 55555 666677777765 2222222 1111 11000
Q ss_pred eeeeecCCCceEEEcCCCc-eeecccceEEEecCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCC------cEEEEe
Q 011126 355 TKSLRKSSDLTCVVLPPKV-FRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGID------RCLRVF 425 (493)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~------~~~~~~ 425 (493)
...+.++.++.+.+|+... ... ........|...|.+++|+| ++ +|++++.|+.|+||++... +.+..+
T Consensus 161 ~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 161 SRLIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred CcEEEEeCCCeEEEEECCccccc--cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 0022344455666665543 111 12334556888999999999 88 9999999999999999876 666666
Q ss_pred c-CCC---------cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCC-CCCeEEEEEccCCCEEEEeecCCC
Q 011126 426 S-HNN---------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI-REIVSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 426 ~-h~~---------~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~-~~~I~sv~~spdG~~l~s~s~d~~ 493 (493)
. |.. .|++++|+| ++++|++|+.||.|++||+.+++.+ .+..| ...|++++ |+|++|++++.|++
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 5 544 999999999 9999999999999999999999877 46777 89999999 99999999998863
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=4.5e-25 Score=224.70 Aligned_cols=228 Identities=16% Similarity=0.144 Sum_probs=185.1
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
+....++|+|++++|++|+.|+.|++|+........ .+..| ..+....|+|++++|++|+.||.|++||+.+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-------MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT-------TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee-------EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 345569999999999999999999999987554321 23445 4455567899999999999999999999999
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
++....+..+...+.++.|.++.. ..+.++.++.+.+|+.... +.+..+.+|...|.+++
T Consensus 129 ~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~ 188 (420)
T 3vl1_A 129 NLQREIDQAHVSEITKLKFFPSGE----------------ALISSSQDMQLKIWSVKDG----SNPRTLIGHRATVTDIA 188 (420)
T ss_dssp CEEEEETTSSSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTC----CCCEEEECCSSCEEEEE
T ss_pred cceeeecccccCccEEEEECCCCC----------------EEEEEeCCCeEEEEeCCCC----cCceEEcCCCCcEEEEE
Confidence 988877777777777777765432 2345566778888877643 45677889999999999
Q ss_pred EeCCC-eEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEE---------------------EccCCCCEEEEEeC
Q 011126 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVA---------------------FNPVDDNYFISGSI 449 (493)
Q Consensus 396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~---------------------fsp~d~~~l~sgs~ 449 (493)
|+|++ +|++++.|++|++||+++++++..+. |...|.+++ |+| ++++|++|+.
T Consensus 189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 267 (420)
T 3vl1_A 189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHV 267 (420)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEET
T ss_pred EcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcC
Confidence 99999 99999999999999999999998885 445555555 467 8899999999
Q ss_pred CCeEEEEeCCCCeEEE--ecCCCCCeEEEEEccCCC-EEEEeecCC
Q 011126 450 DGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGK-VRQNSACNF 492 (493)
Q Consensus 450 Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~spdG~-~l~s~s~d~ 492 (493)
||.|++||+++++.+. ...|...|++++|+|+|+ +|++++.|+
T Consensus 268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg 313 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG 313 (420)
T ss_dssp TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC
Confidence 9999999999887663 345788999999999999 999988765
No 73
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=223.11 Aligned_cols=236 Identities=14% Similarity=0.176 Sum_probs=181.2
Q ss_pred eeecccccceeccC---CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEE------ccCCCEEEEEE
Q 011126 233 RIIDRHGSATLKPG---DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF------SLDGQYLASGG 303 (493)
Q Consensus 233 ~~~~~~~~~~fsp~---g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f------spdg~~Lasgs 303 (493)
.|...+.+++|+|+ +.+|++|+.||.|++|++..... ....+.+|...|.++.| +|++++|++++
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~ 136 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS 136 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc------cEEEEEecccceEEEeeccccccCCCccEEEEEe
Confidence 45567788999999 69999999999999999986542 23467899999999965 68999999999
Q ss_pred CCCcEEEEecCCCe-eeeeeeccCC----CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 304 EDGTVRVWKVIEHE-RLDGFDVQDT----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 304 ~Dg~V~iWdl~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
.||.|++||+.+++ .+..+..+.. .+.++.+.+. +. ......+.++.++.+.+|+.....
T Consensus 137 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~---~~~~~l~~~~~d~~i~i~d~~~~~--- 201 (357)
T 3i2n_A 137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA---------YN---QEERVVCAGYDNGDIKLFDLRNMA--- 201 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC---------CC----CCCEEEEEETTSEEEEEETTTTE---
T ss_pred CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec---------cC---CCCCEEEEEccCCeEEEEECccCc---
Confidence 99999999999886 5555554333 2222222110 00 011233455667788888776543
Q ss_pred cceEEEecCCCCEeEEEEeC---CC-eEEEEeCCCeEEEEECCCCcEEEEe------cCCCcEEEEEEccCCCC-EEEEE
Q 011126 379 KPLHEFQGHSSEVLDLSWSK---NG-FLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDN-YFISG 447 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp---~g-~l~sgs~Dg~V~lWd~~~~~~~~~~------~h~~~V~~v~fsp~d~~-~l~sg 447 (493)
......|...|.+++|+| ++ +|++++.|+.|++||+++++++..+ .|...|++++|+| ++. +|++|
T Consensus 202 --~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~ 278 (357)
T 3i2n_A 202 --LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTA 278 (357)
T ss_dssp --EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEE
T ss_pred --eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEE
Confidence 234567899999999999 77 9999999999999999877655443 4999999999999 887 89999
Q ss_pred eCCCeEEEEeCCCC--------------------eEEEecCCCCCeEEEEEccCCCEEE-EeecCC
Q 011126 448 SIDGKVRIWEVRRC--------------------QVVDYTDIREIVSAVCYCPDGKVRQ-NSACNF 492 (493)
Q Consensus 448 s~Dg~V~IWdl~~~--------------------~~~~~~~~~~~I~sv~~spdG~~l~-s~s~d~ 492 (493)
+.||.|++||++.+ .+..+..|...|++++|+|+|++|+ +++.|+
T Consensus 279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 99999999999753 2335788999999999999999998 677664
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=7.3e-26 Score=228.15 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=180.4
Q ss_pred eeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 233 RIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 233 ~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
+|...+.+++|+| ++.+|++++.|+.|++|++.... .. ......+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV--IQ---VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 190 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE--EE---EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc--eE---EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence 4566778899999 78999999999999999998422 11 111223456889999999999999999999999999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
|+ +++.+..+..+...+.++.+.+.... ..+.++.++.+.+|+..........+..+ +|...|
T Consensus 191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~---------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v 253 (383)
T 3ei3_B 191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDW---------------LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPV 253 (383)
T ss_dssp ET-TSCEEEEEECSSSCEEEEEECSSCTT---------------EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCE
T ss_pred EC-CCCEEEEeccCCCcEEEEEECCCCCC---------------EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCce
Confidence 99 57777778777777777777665432 23345667788888876644434445555 799999
Q ss_pred eEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec-C-------C----------CcEEEEEEccCCCCEEEEEeCCC
Q 011126 392 LDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-H-------N----------NYVTSVAFNPVDDNYFISGSIDG 451 (493)
Q Consensus 392 ~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h-------~----------~~V~~v~fsp~d~~~l~sgs~Dg 451 (493)
.+++|+| ++ +|++++.|+.|+|||++++.++..+. | . ..+..++|+| ++++ +|+.||
T Consensus 254 ~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~ 330 (383)
T 3ei3_B 254 NAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKR 330 (383)
T ss_dssp EEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCC
T ss_pred EEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCC
Confidence 9999999 88 99999999999999999887765553 2 2 3344566666 6665 777999
Q ss_pred eEEEEeCCCCeEEE-ecC--CCCCeEEEEEccCCCEEEEeecCC
Q 011126 452 KVRIWEVRRCQVVD-YTD--IREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 452 ~V~IWdl~~~~~~~-~~~--~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.|+|||+.+++.+. +.. +...+..++|+|+|++|++++ |+
T Consensus 331 ~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp CEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred eEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 99999999998774 443 567788889999999999996 54
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=1.4e-25 Score=224.07 Aligned_cols=240 Identities=12% Similarity=0.100 Sum_probs=185.8
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+..|...+.+++|+|++++|++++.||.|++|++...... ....+..|...|.+++|+|++++|++++.|+.|+
T Consensus 47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK-----PTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 121 (372)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-----EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee-----eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEE
Confidence 34566777888999999999999999999999998654311 1123467999999999999999999999999999
Q ss_pred EEecCCCee---eeee-eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce-----------
Q 011126 310 VWKVIEHER---LDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF----------- 374 (493)
Q Consensus 310 iWdl~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~----------- 374 (493)
+||+..+.. ...+ ..+...+.++.+.++. ...+.++.++.+.+|+....
T Consensus 122 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 185 (372)
T 1k8k_C 122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS----------------VLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185 (372)
T ss_dssp EEEEETTTTEEEEEEECTTCCSCEEEEEECTTS----------------SEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred EEEecCCCcceeeeeeecccCCCeeEEEEcCCC----------------CEEEEEcCCCCEEEEEccccccccccccccc
Confidence 999987763 2222 2223344444444322 12334456677777764311
Q ss_pred ---eecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC
Q 011126 375 ---RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 375 ---~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
....+++..+.+|...|.+++|+|++ +|++++.|+.|++||+++++++..+. |...|++++|+| ++.+|++| .
T Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~ 263 (372)
T 1k8k_C 186 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAG-H 263 (372)
T ss_dssp BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEE-T
T ss_pred ccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec-CCCEEEEE-e
Confidence 11235577788999999999999999 99999999999999999999998886 888999999999 88888887 9
Q ss_pred CCeEEEEeCCC--CeE---------------------------------------EEe-cCCCCCeEEEEEc-cCC---C
Q 011126 450 DGKVRIWEVRR--CQV---------------------------------------VDY-TDIREIVSAVCYC-PDG---K 483 (493)
Q Consensus 450 Dg~V~IWdl~~--~~~---------------------------------------~~~-~~~~~~I~sv~~s-pdG---~ 483 (493)
|+.|++|++.+ ++. ..+ .+|...|++++|. ++| +
T Consensus 264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~ 343 (372)
T 1k8k_C 264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 343 (372)
T ss_dssp TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence 99999999988 531 122 4889999999966 666 9
Q ss_pred EEEEeecCC
Q 011126 484 VRQNSACNF 492 (493)
Q Consensus 484 ~l~s~s~d~ 492 (493)
+|++++.|+
T Consensus 344 ~l~s~~~Dg 352 (372)
T 1k8k_C 344 QFCTTGMDG 352 (372)
T ss_dssp EEEEEETTS
T ss_pred eEEEecCCC
Confidence 999999886
No 76
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=1.7e-25 Score=225.19 Aligned_cols=203 Identities=13% Similarity=0.144 Sum_probs=149.2
Q ss_pred ccccceeccCCCeEEe--eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126 237 RHGSATLKPGDHELTL--GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 237 ~~~~~~fsp~g~~las--gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~ 314 (493)
.+..++|+|||+++|+ ++.|++|+|||+...... ..+ .|.+.|++|+|+|||++|++++.+ .+++|+..
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~-------~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~ 205 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK-------FEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTV 205 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE-------EEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETT
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE-------EEe-CCCCceEEEEEccCCceEEeccce-eEEEEEec
Confidence 3556899999999865 457899999998754422 233 478899999999999999999865 56677776
Q ss_pred CCeeeeee--eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 315 EHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 315 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
++..+... ..+...+..+.|.+++...+.. ..+ ......+..|+.............+.+|...|+
T Consensus 206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~-s~d-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~ 273 (365)
T 4h5i_A 206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAA-SLK-----------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT 273 (365)
T ss_dssp TCCEEEEECCCCTTEEEEEEEEEETTEEEEEE-EES-----------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred cCcceeeeecCCCCCCEEEEEEcCCCCEEEEE-ecC-----------CcceeEEeecccccceecceeeeeecCCCCCeE
Confidence 76655433 2233345556666654322211 111 111223444443332222233566789999999
Q ss_pred EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-c-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
+++|+|+| +||+|+.|++|+|||+.+++++..+ . |...|++|+|+| ++++||+|+.|++|||||+...
T Consensus 274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 274 SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999 9999999999999999999999886 3 999999999999 9999999999999999999743
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.1e-24 Score=221.69 Aligned_cols=229 Identities=22% Similarity=0.315 Sum_probs=187.3
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-cccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
++.+.+....+++++..+++++.|+.|+||++...... ..+. .|...|++++|+|++++|++|+.||.|++|
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS-------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE-------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 45555555556666677899999999999999765422 1223 389999999999999999999999999999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
|+.+++.+..+..+...+.++.+. . ...+.++.++.+.+|+.... ...+..+.+|...|
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~--~----------------~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v 220 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN--R----------------HVLSSGSRSGAIHHHDVRIA---NHQIGTLQGHSSEV 220 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE--T----------------TEEEEEETTSEEEEEETTSS---SCEEEEEECCSSCE
T ss_pred ECcCCeEEEEecCCCCceEEEEEC--C----------------CEEEEEcCCCCEEEEecccC---cceeeEEcCCCCCe
Confidence 999999888887766666555551 1 13345667788888877532 24567788999999
Q ss_pred eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEe--CCCeEEEEeCCCCeEEEec
Q 011126 392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYT 467 (493)
Q Consensus 392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs--~Dg~V~IWdl~~~~~~~~~ 467 (493)
.+++|+|++ +|++++.|+.|++||++++.++..+. |...|.+++|+|....++++|+ .|+.|++||+.+++.+...
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~ 300 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 999999998 99999999999999999999988885 9999999999995456777765 7999999999999988766
Q ss_pred CCCCCeEEEEEccCCCEEEEee
Q 011126 468 DIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 468 ~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+...|++++|+|+|+++++++
T Consensus 301 ~~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 301 DAGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp ECSSCEEEEEECSSSSEEEEEE
T ss_pred eCCCcEEEEEECCCCCeEEEEe
Confidence 7888999999999999999854
No 78
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.94 E-value=1.5e-24 Score=231.41 Aligned_cols=236 Identities=18% Similarity=0.232 Sum_probs=191.7
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCC-EEEEEEcc--CCCEEEEEECCCcEE
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSL--DGQYLASGGEDGTVR 309 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fsp--dg~~Lasgs~Dg~V~ 309 (493)
.+...+.+++|+|++++|++++ ++.|+||++...... ......+.+|... |++++|+| ++++|++|+.||.|+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 3557788899999999999998 889999998854211 1234568899999 99999999 999999999999999
Q ss_pred EEecCCC--------eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126 310 VWKVIEH--------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (493)
Q Consensus 310 iWdl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (493)
|||+.++ .....+..+...+.++.|.+++... +....+ ....+.+.+|+. .+.+
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~-----------~~~~~~v~~~d~------~~~~ 153 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL-CVVGEG-----------RDNFGVFISWDS------GNSL 153 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEE-EEEECC-----------SSCSEEEEETTT------CCEE
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEE-EEeccC-----------CCCccEEEEEEC------CCcc
Confidence 9999754 5566666666666666666544221 111100 011256777763 3457
Q ss_pred EEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCC---cEEEEEEccCC-CCEEEEEeCCCeEE
Q 011126 382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---YVTSVAFNPVD-DNYFISGSIDGKVR 454 (493)
Q Consensus 382 ~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~---~V~~v~fsp~d-~~~l~sgs~Dg~V~ 454 (493)
..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |.. .|++++|+| + +++|++++.||.|+
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKIS 232 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEE
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEE
Confidence 7788999999999999998 79999999999999999999999887 888 999999999 8 99999999999999
Q ss_pred EEeCCCCeEEEec-----CCCCCeEEEEEccCCCEEEEeecCC
Q 011126 455 IWEVRRCQVVDYT-----DIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 455 IWdl~~~~~~~~~-----~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+||+.+++.+... .|...|++++|+ ++++|++++.|+
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 274 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA 274 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence 9999999888644 899999999999 999999998764
No 79
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=2.5e-26 Score=233.47 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=163.2
Q ss_pred cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--------CCCEEEEEECCCcEEEE
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--------DGQYLASGGEDGTVRVW 311 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------dg~~Lasgs~Dg~V~iW 311 (493)
...+++++.+||+|+.|++|+||+........ ......+.+|.+.|++|+|+| |+++||||+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~--~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIIT--QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEE--EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccce--eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 36678888999999999999999987654321 122234689999999999998 88999999999999999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc-------------
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE------------- 378 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~------------- 378 (493)
|+.++..+..+..+...+.++.|.+.... ..+.++.++.+.+|+........
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~---------------~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSNPN---------------QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTEEE---------------EEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCCCc---------------eEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence 99988887777777777777777664422 23345566667777654322110
Q ss_pred --------cceEEEecCCCCEeEEEEe-CCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEE--------------
Q 011126 379 --------KPLHEFQGHSSEVLDLSWS-KNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS-------------- 433 (493)
Q Consensus 379 --------~~~~~~~~h~~~V~~l~~s-p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~-------------- 433 (493)
.......+|...|.++.|+ |++ .|++++.|+++++||+..++....+. |...+..
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence 1122345788999999998 677 99999999999999998776655443 3333322
Q ss_pred ----EEEccC-CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 434 ----VAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 434 ----v~fsp~-d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
..|+|. ++.++++|+.||+|+|||+.+++.+ ....|..+|++++|+|||++||+++.++
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 334432 3346678889999999999988655 4677888999999999999999998664
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=2.5e-25 Score=217.03 Aligned_cols=254 Identities=13% Similarity=0.118 Sum_probs=182.4
Q ss_pred ccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceecc--CCC
Q 011126 174 LQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKP--GDH 248 (493)
Q Consensus 174 lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp--~g~ 248 (493)
|+.+.. |+.|+....++++. +|.+..... +.+..+.+|...+.+++|+| ++.
T Consensus 12 V~~~~~s~~g~~las~s~D~~v~-----iw~~~~~~~------------------~~~~~l~gH~~~V~~v~~s~~~~g~ 68 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSDKTIK-----IFEVEGETH------------------KLIDTLTGHEGPVWRVDWAHPKFGT 68 (297)
T ss_dssp EEEEEECTTSSEEEEEETTSCEE-----EEEBCSSCB------------------CCCEEECCCSSCEEEEEECCGGGCS
T ss_pred eEEEEECCCCCEEEEEeCCCEEE-----EEecCCCCc------------------EEEEEEccccCCeEEEEecCCCcCC
Confidence 555443 77888888887777 777542110 12234567888888999976 389
Q ss_pred eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECCCcEEEEecCCCee--eeeeec
Q 011126 249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKVIEHER--LDGFDV 324 (493)
Q Consensus 249 ~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~V~iWdl~~~~~--~~~~~~ 324 (493)
+||+|+.|++|+||++..... .....+.+|...|.+++|+|+ |.+|++|+.|++|++||+.++.. ...+..
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRW-----SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred EEEEEcCCCEEEEEEcCCCce-----EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec
Confidence 999999999999999875431 123356789999999999997 89999999999999999987632 234455
Q ss_pred cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC---C-
Q 011126 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN---G- 400 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---g- 400 (493)
+...+.++.|.+...... ............+.++.++.+.+|+.............+.+|...|.+++|+|+ +
T Consensus 144 h~~~v~~~~~~p~~~~~~---~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEED---GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (297)
T ss_dssp CSSCEEEEEECCCC---------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred ccCccceEeecCCccccc---ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence 555556666655431110 000000012345677788888888754322111245678899999999999998 4
Q ss_pred eEEEEeCCCeEEEEECCCCc---EEEEe---cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 401 FLLSSSADKTVRLWQVGIDR---CLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~---~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
+|++++.|++|+|||+.... ....+ .|...|.+++|+| ++++|++++.||+|+||+..
T Consensus 221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEEC
Confidence 89999999999999998643 22233 3788999999999 99999999999999999986
No 81
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.9e-25 Score=233.71 Aligned_cols=242 Identities=10% Similarity=0.056 Sum_probs=178.9
Q ss_pred eeeecccccceeccC------CCeEEeeecCCeEEEEECCCccccc----cccccceeeecccCCEEEEEEccCCCEEEE
Q 011126 232 ARIIDRHGSATLKPG------DHELTLGQRMRRVRVHPVKKQSREL----SSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~------g~~lasgs~dg~V~vwd~~~~~~~~----~~~~~~~~l~~H~~~I~~l~fspdg~~Las 301 (493)
.++...+..++|+|+ +.+||+++.||+|+||++....... ........+.+|...|++++|++++ +|++
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las 282 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC 282 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE
Confidence 445567788999997 5799999999999999997553210 1111234678999999999999864 8999
Q ss_pred EECCCcEEEEecCCCee-eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126 302 GGEDGTVRVWKVIEHER-LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 302 gs~Dg~V~iWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (493)
|+.||+|++||+.++.. ...+..+...+.++.+...... ....++++.|+.+.+|+.+... +
T Consensus 283 gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g-------------~~~laS~S~D~tvklWD~~~~~----~ 345 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE-------------DTVVSTVAVDGYFYIFNPKDIA----T 345 (524)
T ss_dssp EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS-------------CCEEEEEETTSEEEEECGGGHH----H
T ss_pred EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC-------------CeEEEEeccCCeEEEEECCCCC----c
Confidence 99999999999987643 3345555555555422211110 0234567889999999986533 2
Q ss_pred eEEEecCCC--CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126 381 LHEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (493)
Q Consensus 381 ~~~~~~h~~--~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW 456 (493)
+..+.+|.. .|.+++|+|++ .|++++.|++|+|||++++.++..+. |.+.|++|+|+| ++++|++|+.||+|+||
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLAGSADGSLIIT 424 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBCEEEETTTEEECC
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeEEEEECCCEEEEE
Confidence 344556653 58899999998 99999999999999999998877664 999999999999 99999999999999999
Q ss_pred eCCCC---------------eE------------------------------EEecCCCCCeEEEEEccCCC---EEEEe
Q 011126 457 EVRRC---------------QV------------------------------VDYTDIREIVSAVCYCPDGK---VRQNS 488 (493)
Q Consensus 457 dl~~~---------------~~------------------------------~~~~~~~~~I~sv~~spdG~---~l~s~ 488 (493)
|+..+ .+ ..+.+|...|++|+|+|+++ .+++|
T Consensus 425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp BSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred echHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 86321 01 01234667789999999964 88888
Q ss_pred ecCC
Q 011126 489 ACNF 492 (493)
Q Consensus 489 s~d~ 492 (493)
+.++
T Consensus 505 ~~~g 508 (524)
T 2j04_B 505 NSAG 508 (524)
T ss_dssp CTTS
T ss_pred ccCc
Confidence 7654
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=5.1e-25 Score=218.44 Aligned_cols=242 Identities=13% Similarity=0.167 Sum_probs=187.2
Q ss_pred eeeecccccceeccCCCeE-Eeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccC---CCEEEEEEC
Q 011126 232 ARIIDRHGSATLKPGDHEL-TLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE 304 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~l-asgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~ 304 (493)
.+|...+.+++|+|++..+ ++|+. |+.|+||++........ ...+|...|++++|+|+ +.+|++|+.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------REIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------EEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------eeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 4577888899999999655 56665 99999999886542211 22479999999999998 799999999
Q ss_pred CCcEEEEecCCCe-eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 305 DGTVRVWKVIEHE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 305 Dg~V~iWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
||.|++||+.+++ .+..+..+...+.++.+.+.- .+. ......+.++.++.+.+|+..... .++..
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~s---~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~ 155 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL-------GIG---EGAPEIVTGSRDGTVKVWDPRQKD---DPVAN 155 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG-------GCC----CCCEEEEEETTSCEEEECTTSCS---SCSEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeecccc-------ccC---CCccEEEEEeCCCeEEEEeCCCCC---Cccee
Confidence 9999999999887 777777776666666553210 000 011233456677888888876532 24566
Q ss_pred EecCCC----CEeEEE----EeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC--CCCEEEEEeCCCe
Q 011126 384 FQGHSS----EVLDLS----WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--DDNYFISGSIDGK 452 (493)
Q Consensus 384 ~~~h~~----~V~~l~----~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~--d~~~l~sgs~Dg~ 452 (493)
+..|.+ .|.+++ |+|++ +|++++.|+.|++||+++++......|...|++++|+|. ++++|++|+.||.
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK 235 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence 655554 899998 67788 999999999999999999999888889999999999995 6899999999999
Q ss_pred EEEEeCCCCeEE------EecCCCCCeEEEEEccCCC-EEEEeecCC
Q 011126 453 VRIWEVRRCQVV------DYTDIREIVSAVCYCPDGK-VRQNSACNF 492 (493)
Q Consensus 453 V~IWdl~~~~~~------~~~~~~~~I~sv~~spdG~-~l~s~s~d~ 492 (493)
|++||+++++.+ ....|...|++++|+|+|+ +|++++.|+
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 282 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG 282 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC
Confidence 999999876533 2348999999999999999 788888764
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=1.8e-24 Score=219.79 Aligned_cols=230 Identities=17% Similarity=0.238 Sum_probs=182.7
Q ss_pred cceeccCCCeEE-eeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCC-
Q 011126 240 SATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEH- 316 (493)
Q Consensus 240 ~~~fsp~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~- 316 (493)
.++++|+...++ +++.+|.|+||++.+..... .....+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 477888876544 57899999999986543321 12335788999999999999 9999999999999999999887
Q ss_pred ------eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE--ecCC
Q 011126 317 ------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHS 388 (493)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~h~ 388 (493)
+.+..+..+...+.++.|.+.... ..+.++.++.+.+|+.... +.+..+ .+|.
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~---------------~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~ 176 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQN---------------VLLSAGCDNVILVWDVGTG----AAVLTLGPDVHP 176 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTT---------------EEEEEETTSCEEEEETTTT----EEEEEECTTTCC
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCC---------------EEEEEcCCCEEEEEECCCC----CccEEEecCCCC
Confidence 445666666666666666554422 2334556777888877643 346677 7899
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--cCCCc-EEEEEEccCCCCEEEEE---eCCCeEEEEeCCCC
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNY-VTSVAFNPVDDNYFISG---SIDGKVRIWEVRRC 461 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~-V~~v~fsp~d~~~l~sg---s~Dg~V~IWdl~~~ 461 (493)
..|.+++|+|++ +|++++.|++|++||+++++.+..+ .|... +.++.|+| ++.+|++| +.|+.|++||++++
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBC
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccc
Confidence 999999999999 9999999999999999999999887 37665 89999999 99999999 79999999999986
Q ss_pred eE---EEecCCCCCeEEEEEccCCCEEEEee-cCC
Q 011126 462 QV---VDYTDIREIVSAVCYCPDGKVRQNSA-CNF 492 (493)
Q Consensus 462 ~~---~~~~~~~~~I~sv~~spdG~~l~s~s-~d~ 492 (493)
+. .....+...|.+++|+|+|++|++++ .|.
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg 290 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS 290 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC
Confidence 53 23456778899999999999997655 353
No 84
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=1.6e-24 Score=217.07 Aligned_cols=250 Identities=9% Similarity=0.067 Sum_probs=178.1
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVR 309 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~ 309 (493)
...|.+.+.+++|+|+|++||+|+.++ ++||+....... +..+...+..+.+.++++++ ++++.|++|+
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE---------EEEECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee---------eeeecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence 456778899999999999999998775 789997643321 11223358888999988877 5677889999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCC-----CCceeeeeccCc-ccc--------------ceeeee-cCCCceEEE
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINH-----LSQLIPIDVDKE-KID--------------KTKSLR-KSSDLTCVV 368 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~--------------~~~~~~-~s~~~~~~~ 368 (493)
|||+.+++.+..+.... .+..+.+.... ...+..++.... ... ....+. +..++.+.+
T Consensus 85 iWd~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 85 IWDDVKKQDVSRIKVDA-PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI 163 (355)
T ss_dssp EEETTTTEEEEEEECSS-CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred EEECCCCcEEEEEECCC-ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence 99999999888876433 34444332211 112222232222 100 111222 677888888
Q ss_pred cCCCceee-----------cccc-eEEEecCCCCEeEEEEeCCC-eEEEEeCCCe-EEEEECCCCcEEEEec---CCCcE
Q 011126 369 LPPKVFRL-----------LEKP-LHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VRLWQVGIDRCLRVFS---HNNYV 431 (493)
Q Consensus 369 ~~~~~~~~-----------~~~~-~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~-V~lWd~~~~~~~~~~~---h~~~V 431 (493)
|+...... ...| +..+.+|...|++++|+|+| +|++|+.|++ |+|||+++++++..+. |...|
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v 243 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADV 243 (355)
T ss_dssp EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence 88764320 0123 67889999999999999999 9999999998 9999999999999996 99999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE---e---------------------cCCCCCeEEEEEccCCCEEEE
Q 011126 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---Y---------------------TDIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 432 ~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~---~---------------------~~~~~~I~sv~~spdG~~l~s 487 (493)
++++|+| ++++|++++.|++|+|||+....... + .........++|+|||+.+++
T Consensus 244 ~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~ 322 (355)
T 3vu4_A 244 VDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVV 322 (355)
T ss_dssp EEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEE
T ss_pred EEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEE
Confidence 9999999 99999999999999999997653110 0 011223467999999999999
Q ss_pred eecCC
Q 011126 488 SACNF 492 (493)
Q Consensus 488 ~s~d~ 492 (493)
++.|+
T Consensus 323 ~~~dg 327 (355)
T 3vu4_A 323 WPHTR 327 (355)
T ss_dssp ETTTT
T ss_pred EeCCC
Confidence 88764
No 85
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=8e-26 Score=227.00 Aligned_cols=207 Identities=12% Similarity=0.084 Sum_probs=151.1
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+..|...+.+++|+|++++|++++.|+.|+||++.... .......+.+|...|++++|+|++++|++|+.|+.|+
T Consensus 50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 125 (377)
T 3dwl_C 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS 125 (377)
T ss_dssp CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence 455677788889999999999999999999999998654 1122335678999999999999999999999999999
Q ss_pred EEecCCCee---eeeeec-cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee---------
Q 011126 310 VWKVIEHER---LDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL--------- 376 (493)
Q Consensus 310 iWdl~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--------- 376 (493)
+||+.+++. ...+.. +...+.++.+.++.. ..+.++.++.+.+|+......
T Consensus 126 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 189 (377)
T 3dwl_C 126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV----------------LLAAGCADRKAYVLSAYVRDVDAKPEASVW 189 (377)
T ss_dssp ECCC-----CCCCEEECSSCCSCEEEEEECTTSS----------------EEEEEESSSCEEEEEECCSSCC-CCCSCSS
T ss_pred EEEECCcccceeeeEeecccCCCeEEEEEcCCCC----------------EEEEEeCCCEEEEEEEEecccCCCcccccc
Confidence 999988763 455554 555555665554331 223445566677776532111
Q ss_pred -----cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE----EEEec-CCCcEEEEEEccCCCCEEE
Q 011126 377 -----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC----LRVFS-HNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 377 -----~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~----~~~~~-h~~~V~~v~fsp~d~~~l~ 445 (493)
..+++..+ +|...|.+++|+|++ +|++++.|++|+|||+.++.+ +..+. |...|++++|+| ++++|+
T Consensus 190 ~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 267 (377)
T 3dwl_C 190 GSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN-ESAIVA 267 (377)
T ss_dssp CSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE-TTEEEE
T ss_pred ccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC-CCCEEE
Confidence 12334455 899999999999999 999999999999999999887 55554 889999999999 999999
Q ss_pred EEeCCCeEEEEeCC
Q 011126 446 SGSIDGKVRIWEVR 459 (493)
Q Consensus 446 sgs~Dg~V~IWdl~ 459 (493)
+|+.|+.+ +|+..
T Consensus 268 ~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 268 AGYNYSPI-LLQGN 280 (377)
T ss_dssp EESSSSEE-EECCC
T ss_pred EEcCCcEE-EEEeC
Confidence 99877666 66664
No 86
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.9e-25 Score=245.62 Aligned_cols=236 Identities=14% Similarity=0.104 Sum_probs=179.8
Q ss_pred cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (493)
.....+|...+.+++|+|++.+||+|+.||+|+||+....... ....|...|++|+|+| |++|++++.|++
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--------~~~~~~~~V~~l~fsp-g~~L~S~s~D~~ 80 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--------IKLEDRSAIKEMRFVK-GIYLVVINAKDT 80 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--------EECSSCCCEEEEEEET-TTEEEEEETTCE
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--------EEcCCCCCEEEEEEcC-CCEEEEEECcCe
Confidence 3344567788899999999999999999999999997643211 1234788999999999 889999999999
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce------
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL------ 381 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~------ 381 (493)
|+|||+.+++.+..+. +...+.++.+.++. ...+.++.++.+.+|+.....+....+
T Consensus 81 v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g----------------~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVF-VPGKITSIDTDASL----------------DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp EEEEETTTCSEEEEEE-CSSCEEEEECCTTC----------------SEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred EEEEECCCCcEEEEEc-CCCCEEEEEECCCC----------------CEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 9999999998877775 22334444443322 223456677788888776544311001
Q ss_pred -EEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-C------------------CCcEEEEEEccC
Q 011126 382 -HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-H------------------NNYVTSVAFNPV 439 (493)
Q Consensus 382 -~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h------------------~~~V~~v~fsp~ 439 (493)
..+.+|.+.|++|+|+|++ +|++|+.|++| |||+++++++..+. | ...|++++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp- 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP- 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-
Confidence 2346799999999999974 89999999999 99999999988875 3 47799999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEe--c-----------------CCCCCeEEEEEc----cCC-CEEEEeecC
Q 011126 440 DDNYFISGSIDGKVRIWEVRRCQVVDY--T-----------------DIREIVSAVCYC----PDG-KVRQNSACN 491 (493)
Q Consensus 440 d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~-----------------~~~~~I~sv~~s----pdG-~~l~s~s~d 491 (493)
++.+|++|+.||+|+|||+++++.+.. . .+...|++++|+ |++ ..|++|+.+
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 999999999999999999999887642 1 134579999995 554 456666543
No 87
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.93 E-value=1.8e-24 Score=239.05 Aligned_cols=234 Identities=19% Similarity=0.281 Sum_probs=191.1
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+..|...+.+++|+|++++|++|+.||.|+||++.... ....+.+|.+.|++++|+|++++|++++.||+|+
T Consensus 50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 122 (814)
T 3mkq_A 50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (814)
T ss_dssp EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence 344566778889999999999999999999999987543 2345788999999999999999999999999999
Q ss_pred EEecCCC-eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-C
Q 011126 310 VWKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-H 387 (493)
Q Consensus 310 iWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h 387 (493)
+||+.++ .....+..+...+.++.|.+... ...+.++.++.+.+|+.... .+...+.. |
T Consensus 123 vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---------------~~l~~~~~dg~v~vwd~~~~----~~~~~~~~~~ 183 (814)
T 3mkq_A 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDP---------------STFASGCLDRTVKVWSLGQS----TPNFTLTTGQ 183 (814)
T ss_dssp EEEGGGTSEEEEEEECCSSCEEEEEEETTEE---------------EEEEEEETTSEEEEEETTCS----SCSEEEECCC
T ss_pred EEECCCCceEEEEEcCCCCcEEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCC----cceeEEecCC
Confidence 9999887 56666666666666666655211 22345566777888876432 23444444 4
Q ss_pred CCCEeEEEEeC--CC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 388 SSEVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 388 ~~~V~~l~~sp--~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
...|.+++|+| ++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.||.|++||+.+++.
T Consensus 184 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSE
T ss_pred CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 48999999999 77 99999999999999999999988887 899999999999 999999999999999999999887
Q ss_pred E-EecCCCCCeEEEEEccCCC--EEEEeec
Q 011126 464 V-DYTDIREIVSAVCYCPDGK--VRQNSAC 490 (493)
Q Consensus 464 ~-~~~~~~~~I~sv~~spdG~--~l~s~s~ 490 (493)
+ .+..+...+++++|+|+|+ +++++..
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 292 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEeC
Confidence 7 4677888999999999997 4555543
No 88
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=2.5e-25 Score=218.60 Aligned_cols=219 Identities=19% Similarity=0.268 Sum_probs=163.0
Q ss_pred ceeeeecccccceecc--CCCeEEeeecCCeEEEEECCCccccc--cccccceeeecccCCEEEEEEccC--CCEEEEEE
Q 011126 230 AMARIIDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSLD--GQYLASGG 303 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp--~g~~lasgs~dg~V~vwd~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs 303 (493)
.+.+|...+.+++|+| ++.+|++|+.||.|+||++....... ........+.+|...|.+++|+|+ +.+|++++
T Consensus 52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence 3456777888899999 69999999999999999998654321 111234567889999999999999 99999999
Q ss_pred CCCcEEEEecCCCeeeeeeec-------------cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcC
Q 011126 304 EDGTVRVWKVIEHERLDGFDV-------------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (493)
Q Consensus 304 ~Dg~V~iWdl~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 370 (493)
.||.|++||+.+++.+..+.. +...+.++.+.+. .......+.++.++.++++.
T Consensus 132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~~~~~~~ 198 (351)
T 3f3f_A 132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS-------------RFSPEKLAVSALEQAIIYQR 198 (351)
T ss_dssp TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC-------------SSSCCEEEEEETTEEEEEEE
T ss_pred CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC-------------CCCCcEEEEecCCCcEEEEc
Confidence 999999999988876554432 2223333444332 11122333444445554443
Q ss_pred CCceeecccceEEEecCCCCEeEEEEeCCC-----eEEEEeCCCeEEEEECCCC--------------------------
Q 011126 371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGID-------------------------- 419 (493)
Q Consensus 371 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-----~l~sgs~Dg~V~lWd~~~~-------------------------- 419 (493)
...... ..+..+.+|...|++++|+|++ +|++++.|++|++||++.+
T Consensus 199 ~~~~~~--~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
T 3f3f_A 199 GKDGKL--HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDA 276 (351)
T ss_dssp CTTSCE--EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------
T ss_pred cCCCce--eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccc
Confidence 332111 2356778899999999999995 7999999999999999864
Q ss_pred --------------------cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 420 --------------------RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 420 --------------------~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
+++..+. |...|++++|+| ++++|++|+.||.|+|||+.+++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTTSCE
T ss_pred ccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecCcCcch
Confidence 4455554 899999999999 9999999999999999999987543
No 89
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.9e-24 Score=239.56 Aligned_cols=325 Identities=10% Similarity=0.016 Sum_probs=207.9
Q ss_pred CcceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhh
Q 011126 144 HAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKV 220 (493)
Q Consensus 144 ~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~ 220 (493)
+...+|||+++|+....-. |... +..+.+ ++.|+...-++.+. +|.+....... ...
T Consensus 78 D~~v~lWd~~~~~~~~~~~-----~~~~--V~~v~~sp~g~~l~sgs~dg~V~-----lwd~~~~~~~~--------~~i 137 (902)
T 2oaj_A 78 KDTVYVLSLYSQKVLTTVF-----VPGK--ITSIDTDASLDWMLIGLQNGSMI-----VYDIDRDQLSS--------FKL 137 (902)
T ss_dssp TCEEEEEETTTCSEEEEEE-----CSSC--EEEEECCTTCSEEEEEETTSCEE-----EEETTTTEEEE--------EEE
T ss_pred cCeEEEEECCCCcEEEEEc-----CCCC--EEEEEECCCCCEEEEEcCCCcEE-----EEECCCCcccc--------cee
Confidence 3457899999987654221 1111 444443 77888887777776 88765432110 000
Q ss_pred ccccccccCceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCccccccccccc------------eeeecccCCE
Q 011126 221 KRGWLKKLGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSI 287 (493)
Q Consensus 221 k~~w~~~~~~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~------------~~l~~H~~~I 287 (493)
...| .......+|...+.+++|+|+ +.+|++|+.||.| |||+....... .+... ....+|...|
T Consensus 138 ~~~~-~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 138 DNLQ-KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ-SFIYELPPFAPGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp CCHH-HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE-EECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred cccc-ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE-EEecccCCcCCCcccccccccccCCCe
Confidence 0011 100233567788899999996 4789999999999 99998654211 11000 0113457889
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEecCCCeeeee--ee---cc-------------CCCCceEEEeeCCC----C-----
Q 011126 288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG--FD---VQ-------------DTDPSCLYFTINHL----S----- 340 (493)
Q Consensus 288 ~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~--~~---~~-------------~~~~~~~~~~~~~~----~----- 340 (493)
++++|+|+|++|++|+.||+|++||+.+++.+.. +. .+ ...+..+.|.+... .
T Consensus 215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg 294 (902)
T 2oaj_A 215 IQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH 294 (902)
T ss_dssp EEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence 9999999999999999999999999988876542 21 11 11233334432110 0
Q ss_pred ---------ceeeee-----------------------------------------------------------------
Q 011126 341 ---------QLIPID----------------------------------------------------------------- 346 (493)
Q Consensus 341 ---------~~~~~~----------------------------------------------------------------- 346 (493)
.+..+.
T Consensus 295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence 000000
Q ss_pred ------ccCcc-----------------------------------------------------------ccceeeeecC
Q 011126 347 ------VDKEK-----------------------------------------------------------IDKTKSLRKS 361 (493)
Q Consensus 347 ------~~~~~-----------------------------------------------------------~~~~~~~~~s 361 (493)
...+. ......+.++
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs 454 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH 454 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE
T ss_pred cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec
Confidence 00000 0000112233
Q ss_pred CCceEEEcCCCceeecccceEEE--e-----cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC--------------
Q 011126 362 SDLTCVVLPPKVFRLLEKPLHEF--Q-----GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-------------- 419 (493)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~--~-----~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~-------------- 419 (493)
.|+.+.+|+.....+........ . +|...|++|+|+|++ +||+|+.|++|+|||+.++
T Consensus 455 ~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~ 534 (902)
T 2oaj_A 455 SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDL 534 (902)
T ss_dssp TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC------------
T ss_pred CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCccc
Confidence 33344444433221111011111 1 788999999999999 9999999999999999765
Q ss_pred -------------------------------cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--
Q 011126 420 -------------------------------RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-- 465 (493)
Q Consensus 420 -------------------------------~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-- 465 (493)
+++.++. |.+.|++|+|+| +| +||+|+.|++|+|||+++..++.
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~ 612 (902)
T 2oaj_A 535 EMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYME 612 (902)
T ss_dssp ---CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEe
Confidence 2355665 999999999999 99 99999999999999999887762
Q ss_pred ----ec-CCCCCeEEEEEc-----cCC---CEEEEeecCCC
Q 011126 466 ----YT-DIREIVSAVCYC-----PDG---KVRQNSACNFC 493 (493)
Q Consensus 466 ----~~-~~~~~I~sv~~s-----pdG---~~l~s~s~d~~ 493 (493)
+. +|...|++|+|+ ||| ++|++++.|.+
T Consensus 613 ~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t 653 (902)
T 2oaj_A 613 NIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE 653 (902)
T ss_dssp EGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred ehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence 22 788899999999 886 89999998763
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.93 E-value=1.1e-23 Score=217.08 Aligned_cols=281 Identities=19% Similarity=0.258 Sum_probs=214.9
Q ss_pred CcceeeeecCCCceeEEccCCCchhhhhccccccCC-CcccccccccCCCCCCccccccCCccccccccchhhhhhhhcc
Q 011126 144 HAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS-SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKR 222 (493)
Q Consensus 144 ~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~-~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~ 222 (493)
+...+++|+.+|+....-. +|... +..+.. ++.+.....++++. +|.+...+
T Consensus 138 dg~i~vwd~~~~~~~~~~~----~h~~~--v~~~~~~~~~l~s~~~dg~i~-----vwd~~~~~---------------- 190 (445)
T 2ovr_B 138 DNTLKVWSAVTGKCLRTLV----GHTGG--VWSSQMRDNIIISGSTDRTLK-----VWNAETGE---------------- 190 (445)
T ss_dssp TSCEEEEETTTCCEEEECC----CCSSC--EEEEEEETTEEEEEETTSCEE-----EEETTTTE----------------
T ss_pred CCcEEEEECCCCcEEEEEc----CCCCC--EEEEEecCCEEEEEeCCCeEE-----EEECCcCc----------------
Confidence 3457889998887554322 33333 444444 56677777776666 77653321
Q ss_pred ccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE
Q 011126 223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG 302 (493)
Q Consensus 223 ~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg 302 (493)
....+..|...+.++.++ +.++++|+.||.|++|++.... ....+.+|...|.++.| ++++|++|
T Consensus 191 ----~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 191 ----CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-------CLHVLMGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ----EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-------EEEEEECCSSCEEEEEE--CSSCEEEE
T ss_pred ----EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-------EEEEEcCCcccEEEEEE--CCCEEEEE
Confidence 111233455666666664 6789999999999999987543 23457889999999999 78899999
Q ss_pred ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 303 s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
+.||.|++||+.+++.+..+..+...+.++.+ + ....+.++.++.+.+|+.... +++.
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~----------------~~~l~~~~~d~~i~i~d~~~~----~~~~ 313 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D----------------GIHVVSGSLDTSIRVWDVETG----NCIH 313 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C----------------SSEEEEEETTSCEEEEETTTC----CEEE
T ss_pred cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--C----------------CCEEEEEeCCCeEEEEECCCC----CEEE
Confidence 99999999999999988888766555555444 1 122345666778888877653 4567
Q ss_pred EEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 383 ~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
.+.+|...+.++.++++ +|++++.|+.|++||+++++++..+. |...|++++|+ +++|++|+.||.|+|||+
T Consensus 314 ~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 314 TLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEET
T ss_pred EEcCCcccEEEEEEeCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEEC
Confidence 88899999999988643 99999999999999999999998886 88899999996 479999999999999999
Q ss_pred CCCeEEE-e-----cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 459 RRCQVVD-Y-----TDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 459 ~~~~~~~-~-----~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.+++.+. + ..+...|++++|+|+|.++++++.|+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg 429 (445)
T 2ovr_B 390 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 429 (445)
T ss_dssp TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence 9998774 3 36788999999999999999998876
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=9.8e-25 Score=216.90 Aligned_cols=237 Identities=17% Similarity=0.196 Sum_probs=186.4
Q ss_pred eeeecccccceeccC----CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC----CCEEEEEE
Q 011126 232 ARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQYLASGG 303 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~----g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs 303 (493)
.+|...+.+++|+|+ ...+++++.++.|+||++...... ..+ .......|...|++++|+|+ +++|++|+
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-RLL-QSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-EEE-EEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-Eee-eeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 357788889999984 566777778889999998854321 111 01111237788999999998 67999999
Q ss_pred CCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 304 ~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
.||.|++||+.+++.+..+..+...+.++.|.+.... ..+.++.++.+.+|+.... +.+..
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------~l~s~~~dg~i~iwd~~~~----~~~~~ 153 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN---------------LLLSVSKDHALRLWNIQTD----TLVAI 153 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT---------------EEEEEETTSCEEEEETTTT----EEEEE
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC---------------EEEEEeCCCeEEEEEeecC----eEEEE
Confidence 9999999999999998888888777777777663222 2234556777888877543 33555
Q ss_pred E---ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----------------------------CCCc
Q 011126 384 F---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----------------------------HNNY 430 (493)
Q Consensus 384 ~---~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----------------------------h~~~ 430 (493)
+ .+|...|.+++|+|++ +|++++.|+.|++||+++++.+..+. |...
T Consensus 154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 5 6899999999999999 99999999999999999876554332 8899
Q ss_pred EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--------------E-EecCCCCCeEEEEEccC--CCEEEEeecCC
Q 011126 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--------------V-DYTDIREIVSAVCYCPD--GKVRQNSACNF 492 (493)
Q Consensus 431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--------------~-~~~~~~~~I~sv~~spd--G~~l~s~s~d~ 492 (493)
|++++|+ +++|++++.||.|++||+.+++. + .+..|...|++++|+|+ |++|++++.|+
T Consensus 234 v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 309 (366)
T 3k26_A 234 VDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG 309 (366)
T ss_dssp CCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred EEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence 9999998 57999999999999999987532 3 56778889999999999 99999998775
No 92
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.4e-24 Score=219.33 Aligned_cols=235 Identities=12% Similarity=0.084 Sum_probs=175.2
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccc--cccccc--------------------------------------
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--ELSSLY-------------------------------------- 275 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~--~~~~~~-------------------------------------- 275 (493)
..+.+++|+|+|++|+++ .++.|++|++..... .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 456678999999966665 678999999865540 000000
Q ss_pred ----------cceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecC--CCeeeeeeec--cCCCCceEEEeeCCCC
Q 011126 276 ----------TGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVI--EHERLDGFDV--QDTDPSCLYFTINHLS 340 (493)
Q Consensus 276 ----------~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~--~~~~~~~~~~--~~~~~~~~~~~~~~~~ 340 (493)
......+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+.. +...+.++.|.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~- 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT- 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-
Confidence 011223577789999999999996 899999999999998 7877777653 334445555544331
Q ss_pred ceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC---C-eEEEEeCCCeEEEEEC
Q 011126 341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQV 416 (493)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---g-~l~sgs~Dg~V~lWd~ 416 (493)
..+.++.++.+.+|+.........+...+.+|...|++++|+|+ + +|++++.|++|++||+
T Consensus 163 ---------------~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 163 ---------------TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp ---------------EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred ---------------EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence 12233445666666654433222234467789999999999999 8 9999999999999999
Q ss_pred CCCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec--------------------------C
Q 011126 417 GIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--------------------------D 468 (493)
Q Consensus 417 ~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~--------------------------~ 468 (493)
.++.++..+ .|...|++++|+ ++++|++|+.|++|+|||+.+++++... .
T Consensus 228 ~~~~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
T 2vdu_B 228 PQCFIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI 305 (450)
T ss_dssp SCTTCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred CCCceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence 999888774 499999999999 8999999999999999999999876422 2
Q ss_pred CCCCeEEEEEccCCCEEEEee
Q 011126 469 IREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 469 ~~~~I~sv~~spdG~~l~s~s 489 (493)
....|.+++|+|+|++|++++
T Consensus 306 ~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 306 IEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp BCCCEEEEEECSSSSEEEEEE
T ss_pred ceEEEEEEEEeCCCCEEEEEE
Confidence 345799999999999999987
No 93
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.93 E-value=1.1e-23 Score=209.71 Aligned_cols=196 Identities=22% Similarity=0.341 Sum_probs=157.5
Q ss_pred cceeeecccCCEEEEEE-----cc-CCCEEEEEECCCcEEEEecCCCe-------eeeeeeccCCCCceEEEeeCCCCce
Q 011126 276 TGQEFLAHEGSILTMKF-----SL-DGQYLASGGEDGTVRVWKVIEHE-------RLDGFDVQDTDPSCLYFTINHLSQL 342 (493)
Q Consensus 276 ~~~~l~~H~~~I~~l~f-----sp-dg~~Lasgs~Dg~V~iWdl~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (493)
..+.+.+|.+.|++++| ++ ++++|++|+.|++|+|||+.+.+ ....+..+...+.++.+.+..
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~---- 88 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN---- 88 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST----
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC----
Confidence 34568899999999999 77 99999999999999999997542 334444555555555544322
Q ss_pred eeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE
Q 011126 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC 421 (493)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~ 421 (493)
...+.++.++.+.+|+.... +.+..+.+|...|.+++|+|++ +|++++.|++|++||+.....
T Consensus 89 ------------~~l~s~s~D~~v~lwd~~~~----~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~ 152 (343)
T 2xzm_R 89 ------------CFAISSSWDKTLRLWDLRTG----TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152 (343)
T ss_dssp ------------TEEEEEETTSEEEEEETTSS----CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE
T ss_pred ------------CEEEEEcCCCcEEEEECCCC----cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce
Confidence 23356677889999987653 4567889999999999999999 999999999999999985443
Q ss_pred EEEe---cCCCcEEEEEEccCCC----------CEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEe
Q 011126 422 LRVF---SHNNYVTSVAFNPVDD----------NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 422 ~~~~---~h~~~V~~v~fsp~d~----------~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
.... .|...|.+++|+| ++ .+|++++.||+|++||........+..|...|++++|+|+|++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 3333 3889999999999 65 79999999999999996554445678899999999999999999999
Q ss_pred ecCC
Q 011126 489 ACNF 492 (493)
Q Consensus 489 s~d~ 492 (493)
+.|+
T Consensus 232 s~dg 235 (343)
T 2xzm_R 232 GKDK 235 (343)
T ss_dssp ETTC
T ss_pred cCCC
Confidence 9875
No 94
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=2e-23 Score=215.74 Aligned_cols=289 Identities=19% Similarity=0.156 Sum_probs=219.6
Q ss_pred CcceeeeecCCCceeEEccCCCchhhhhccccccCC--CcccccccccCCCCCCccccccCCccccccccchhhhhhhhc
Q 011126 144 HAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS--SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVK 221 (493)
Q Consensus 144 ~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~--~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k 221 (493)
+...+++|+.+|+....-. +|... |..+.+ +..|.....++++. +|.+...+
T Consensus 141 dg~i~vwd~~~~~~~~~~~----~h~~~--V~~l~~~~~~~l~s~s~dg~i~-----vwd~~~~~--------------- 194 (464)
T 3v7d_B 141 DKMIRVYDSINKKFLLQLS----GHDGG--VWALKYAHGGILVSGSTDRTVR-----VWDIKKGC--------------- 194 (464)
T ss_dssp TSCEEEEETTTTEEEEEEC----CCSSC--EEEEEECSTTEEEEEETTSCEE-----EEETTTTE---------------
T ss_pred CCcEEEEECCCCcEEEEEe----CCCcC--EEEEEEcCCCEEEEEeCCCCEE-----EEECCCCc---------------
Confidence 3457889998887554322 34443 555554 33666777776666 77654321
Q ss_pred cccccccCceeeeecccccceec--cCCCeEEeeecCCeEEEEECCCcccccc----------------ccccceeeecc
Q 011126 222 RGWLKKLGAMARIIDRHGSATLK--PGDHELTLGQRMRRVRVHPVKKQSRELS----------------SLYTGQEFLAH 283 (493)
Q Consensus 222 ~~w~~~~~~~~~~~~~~~~~~fs--p~g~~lasgs~dg~V~vwd~~~~~~~~~----------------~~~~~~~l~~H 283 (493)
....+.+|...+.+++|+ +++.++++|+.|+.|++|++........ .......+.+|
T Consensus 195 -----~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 195 -----CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp -----EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred -----EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 111334566777778887 6789999999999999999986543211 01123467889
Q ss_pred cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCC
Q 011126 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (493)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 363 (493)
...|.++ ++++++|++|+.||.|++||+.+++.+..+..+...+.++.+.++.. ..+.++.+
T Consensus 270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~sg~~d 331 (464)
T 3v7d_B 270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK----------------RCISASMD 331 (464)
T ss_dssp SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT----------------EEEEEETT
T ss_pred cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC----------------EEEEEeCC
Confidence 9999987 56799999999999999999999999888887777777776655432 23456677
Q ss_pred ceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCE
Q 011126 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443 (493)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~ 443 (493)
+.+.+|+.... +++..+.+|...|.+++|++ .+|++++.|++|++||+.++.....+.+...+..++|+| ++++
T Consensus 332 g~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 405 (464)
T 3v7d_B 332 TTIRIWDLENG----ELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV-SDNI 405 (464)
T ss_dssp SCEEEEETTTT----EEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEE-CSSE
T ss_pred CcEEEEECCCC----cEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEe-CCCE
Confidence 78888877643 45778899999999999984 399999999999999999998888888888999999999 9999
Q ss_pred EEEEeCCCeEEEEeCCCCeEEE--ecCCCCCeEEEEEccCCCEEEEeec
Q 011126 444 FISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 444 l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
|++|+ ||.|+|||+.+++++. ...+...|++++|+ ++.+++++.
T Consensus 406 l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~ 451 (464)
T 3v7d_B 406 LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVE 451 (464)
T ss_dssp EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEE
T ss_pred EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEE
Confidence 99998 9999999999999885 57788999999996 556655554
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=1.6e-24 Score=213.44 Aligned_cols=261 Identities=13% Similarity=0.102 Sum_probs=180.5
Q ss_pred hhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeeccccccee
Q 011126 167 EIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATL 243 (493)
Q Consensus 167 ~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~f 243 (493)
+|... |..+.+ |+.|+....++++. +|.+..... ..+..+.+|...+.+++|
T Consensus 11 ~H~~~--V~~v~~s~~g~~lasgs~D~~v~-----lwd~~~~~~------------------~~~~~l~gH~~~V~~v~~ 65 (316)
T 3bg1_A 11 SHEDM--IHDAQMDYYGTRLATCSSDRSVK-----IFDVRNGGQ------------------ILIADLRGHEGPVWQVAW 65 (316)
T ss_dssp ---CC--EEEEEECGGGCEEEEEETTTEEE-----EEEEETTEE------------------EEEEEEECCSSCEEEEEE
T ss_pred cccCe--EEEeeEcCCCCEEEEEeCCCeEE-----EEEecCCCc------------------EEEEEEcCCCccEEEEEe
Confidence 44443 555554 67788887777776 776532110 112345678888889999
Q ss_pred cc--CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECCCcEEEEecCCCee-
Q 011126 244 KP--GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKVIEHER- 318 (493)
Q Consensus 244 sp--~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~V~iWdl~~~~~- 318 (493)
+| ++.+|++|+.|++|+||++..... .....+.+|...|++++|+|+ +.+|++|+.|++|++||+.....
T Consensus 66 ~~~~~~~~l~s~s~D~~v~iWd~~~~~~-----~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 66 AHPMYGNILASCSYDRKVIIWREENGTW-----EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp CCGGGSSCEEEEETTSCEEEECCSSSCC-----CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred CCCCCCCEEEEEECCCEEEEEECCCCcc-----eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 75 489999999999999999875421 122357789999999999997 88999999999999999987632
Q ss_pred --eeeeeccCCCCceEEEeeCCCCceeeeeccC-ccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 319 --LDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 319 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
...+..+...+.++.|.+............. ........+.++.++.+.+|+..... ..+++..+.+|...|.+++
T Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEE
T ss_pred ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEE
Confidence 2333444455556666554321100000000 00012345677788888888653210 0024566789999999999
Q ss_pred EeCCC-----eEEEEeCCCeEEEEECCCCc----EEEE-ecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 396 WSKNG-----FLLSSSADKTVRLWQVGIDR----CLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 396 ~sp~g-----~l~sgs~Dg~V~lWd~~~~~----~~~~-~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
|+|++ +|++++.|++|+||++.... .... ..|...|++++|+| ++++|++++.||+|+||+..
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence 99973 79999999999999997621 1222 24889999999999 99999999999999999975
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.92 E-value=1.9e-24 Score=222.45 Aligned_cols=237 Identities=12% Similarity=0.100 Sum_probs=174.9
Q ss_pred eeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
..+|...|.+++|+| ++.+|++|+.||+|+|||+....... ......+...+.+++|+|++++|++|+.||.|+
T Consensus 160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV-----FASSDTINIWFCSLDVSASSRMVVTGDNVGNVI 234 (435)
T ss_dssp CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE-----EECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE-----EeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence 345778889999998 68899999999999999987543211 111123455688999999999999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+||+.. +.+..+..+...+.++.|.+..... .+.++.++.+.+|+.+...... .+....+|..
T Consensus 235 ~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~---------------~~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~ 297 (435)
T 4e54_B 235 LLNMDG-KELWNLRMHKKKVTHVALNPCCDWF---------------LATASVDQTVKIWDLRQVRGKA-SFLYSLPHRH 297 (435)
T ss_dssp EEESSS-CBCCCSBCCSSCEEEEEECTTCSSE---------------EEEEETTSBCCEEETTTCCSSS-CCSBCCBCSS
T ss_pred eeccCc-ceeEEEecccceEEeeeecCCCceE---------------EEEecCcceeeEEecccccccc-eEEEeeeccc
Confidence 999854 5566666666666666665544322 2344566677777665433221 2233467999
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCC------cEEEEEEccCCCCEEEEEe------------C
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN------YVTSVAFNPVDDNYFISGS------------I 449 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~------~V~~v~fsp~d~~~l~sgs------------~ 449 (493)
.|++++|+|+| +|++++.|++|+|||+.++.+...+. |.. .+..+.|+| ++.++++++ .
T Consensus 298 ~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~ 376 (435)
T 4e54_B 298 PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYE 376 (435)
T ss_dssp CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTC
T ss_pred cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecC
Confidence 99999999999 99999999999999999988776653 321 234567787 666666664 2
Q ss_pred CCeEEEEeCCCCeEEE--ecCCCCCeEEE-EEccCCCEEEEeec
Q 011126 450 DGKVRIWEVRRCQVVD--YTDIREIVSAV-CYCPDGKVRQNSAC 490 (493)
Q Consensus 450 Dg~V~IWdl~~~~~~~--~~~~~~~I~sv-~~spdG~~l~s~s~ 490 (493)
++.|+|||+.+++++. ...|...|.++ +|+|+|++|++|+.
T Consensus 377 ~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d 420 (435)
T 4e54_B 377 LRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMG 420 (435)
T ss_dssp CCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECS
T ss_pred CCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcC
Confidence 3579999999998874 34677888887 69999999988763
No 97
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.5e-23 Score=217.63 Aligned_cols=232 Identities=12% Similarity=0.030 Sum_probs=174.5
Q ss_pred ecccccceeccCCCeEEeeecCCeEEEEECCCcccc----------------------ccccccceeee-cccCCEEEEE
Q 011126 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE----------------------LSSLYTGQEFL-AHEGSILTMK 291 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~----------------------~~~~~~~~~l~-~H~~~I~~l~ 291 (493)
.+.+.+++|+|||+++|+++.|++|+ +....... +........+. .|...|++++
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va 92 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK 92 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence 36677899999999999999999997 42221100 00111111222 5688899999
Q ss_pred EccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCC-----CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceE
Q 011126 292 FSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (493)
Q Consensus 292 fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 366 (493)
|+|+|++||+++.||.|+|||... ++..+. +.. .+.++.|++++. ..+.++.++.+
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~----------------~LAsgs~DGtV 153 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES----------------SIVVGNEDGEL 153 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS----------------CEEEEETTSEE
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC----------------EEEEEcCCCEE
Confidence 999999999999999999999644 444444 333 255566655442 23456678888
Q ss_pred EEcCCCceeeccc---ceEEE----ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcE---EEEe--cCCCcEEEE
Q 011126 367 VVLPPKVFRLLEK---PLHEF----QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRVF--SHNNYVTSV 434 (493)
Q Consensus 367 ~~~~~~~~~~~~~---~~~~~----~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~---~~~~--~h~~~V~~v 434 (493)
.+|+.....+.+. .+.++ .+|...|.+++|+|+| +++++.|++|++||+..+.. .+++ .|...|.++
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv 232 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL 232 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence 8888765322111 24565 6788899999999999 99999999999999988774 3455 377899999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEE--ccCCCEEEEeecCC
Q 011126 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY--CPDGKVRQNSACNF 492 (493)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~--spdG~~l~s~s~d~ 492 (493)
+|+ +++||+++ +++|++||+.+++.. ...+|...|+.+.| +|||+.++++.-++
T Consensus 233 aFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 233 KIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp EEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred EEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence 998 58999987 699999999999885 44489999999999 99999999887554
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6e-24 Score=218.01 Aligned_cols=239 Identities=9% Similarity=0.147 Sum_probs=181.8
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCc--ccccc--ccccceeee--c--ccCCEEEEE--EccCCCEEEEE
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQ--SRELS--SLYTGQEFL--A--HEGSILTMK--FSLDGQYLASG 302 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~--~~~~~--~~~~~~~l~--~--H~~~I~~l~--fspdg~~Lasg 302 (493)
.|...+.+++|+|++.+|++|+.||.|+||++... ..... .......+. . |...+.++. +++++.+|++|
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 46677888999999999999999999999998521 11110 001111111 2 567788888 56889999999
Q ss_pred ECCCcEEEEecCCCeeeeeeec--cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126 303 GEDGTVRVWKVIEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 303 s~Dg~V~iWdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (493)
+.|+.|++||+.+++.+..+.. +...+.++.+.++. ...+.++.++.+.+|+.+. .++
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~----------------~~l~s~~~dg~i~iwd~~~----~~~ 248 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC----------------CVLILGTTRGIIDIWDIRF----NVL 248 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS----------------CEEEEEETTSCEEEEETTT----TEE
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC----------------CEEEEEcCCCeEEEEEcCC----ccE
Confidence 9999999999999999888876 55566666654432 2234566778888888765 334
Q ss_pred eEEEe-cCCCCEeEEEEeC----CC-eEEEEeCCCeEEEEECCCCcEEEEec---------------------------C
Q 011126 381 LHEFQ-GHSSEVLDLSWSK----NG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------------------H 427 (493)
Q Consensus 381 ~~~~~-~h~~~V~~l~~sp----~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---------------------------h 427 (493)
+..+. .|...|.+++|+| ++ +|++++.|++|+|||+.+++++..+. |
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 56665 7888999997765 46 99999999999999999999887775 5
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec-------------------------------------CC
Q 011126 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT-------------------------------------DI 469 (493)
Q Consensus 428 ~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~-------------------------------------~~ 469 (493)
...|++++|++ +++|++|+.||.|++||+.+++... +. .|
T Consensus 329 ~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 406 (437)
T 3gre_A 329 LNALSTISVSN--DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH 406 (437)
T ss_dssp GGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred CCceEEEEECC--ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence 56688999984 5899999999999999999876332 22 28
Q ss_pred CCCeEEEEEccC--CCEEEEeecCCC
Q 011126 470 REIVSAVCYCPD--GKVRQNSACNFC 493 (493)
Q Consensus 470 ~~~I~sv~~spd--G~~l~s~s~d~~ 493 (493)
...|++++|+++ +.+|++++.|++
T Consensus 407 ~~~I~~i~~~~~~~~~~l~s~~~dG~ 432 (437)
T 3gre_A 407 HDIINSISTCEVDETPLLVACDNSGL 432 (437)
T ss_dssp CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred ccceeeEeeeccCCceEEEEEcCCce
Confidence 899999999998 779999988764
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.91 E-value=1.5e-22 Score=208.00 Aligned_cols=218 Identities=21% Similarity=0.368 Sum_probs=178.8
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
.++++++.+|++|+.||.|++||..+.. ....+.+|.+.|++++| ++++|++|+.||+|++||+.+++.+.
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCe-------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 3566699999999999999999987543 33457899999999999 78899999999999999999999888
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 400 (493)
.+..+...+.++.+. . ...+.++.++.+.+|+....... .....+.+|...|.+++|.. .
T Consensus 208 ~~~~h~~~v~~l~~~-------------~-----~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~ 267 (435)
T 1p22_A 208 TLIHHCEAVLHLRFN-------------N-----GMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDFDD-K 267 (435)
T ss_dssp EECCCCSCEEEEECC-------------T-----TEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEEET-T
T ss_pred EEcCCCCcEEEEEEc-------------C-----CEEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEeCC-C
Confidence 887665554444432 1 13456667788888876543211 12366789999999999932 2
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEE
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY 478 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~ 478 (493)
+|++|+.|++|++||+++++++..+. |...|.++.|+ +++|++|+.||.|++||+++++.+ .+..|...|++++|
T Consensus 268 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 99999999999999999999999887 89999999994 579999999999999999998877 47789999999999
Q ss_pred ccCCCEEEEeecCC
Q 011126 479 CPDGKVRQNSACNF 492 (493)
Q Consensus 479 spdG~~l~s~s~d~ 492 (493)
++++|++++.|+
T Consensus 345 --~~~~l~sg~~dg 356 (435)
T 1p22_A 345 --DNKRIVSGAYDG 356 (435)
T ss_dssp --CSSEEEEEETTS
T ss_pred --cCCEEEEEeCCC
Confidence 889999999875
No 100
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.91 E-value=8.6e-23 Score=201.11 Aligned_cols=209 Identities=20% Similarity=0.281 Sum_probs=159.2
Q ss_pred ceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCe-----eeeeeeccCCCCceEEEeeCCCCcee-------
Q 011126 277 GQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHE-----RLDGFDVQDTDPSCLYFTINHLSQLI------- 343 (493)
Q Consensus 277 ~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~------- 343 (493)
..+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.+ ....+..+...+.++.|.+++...+.
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 3468999999999999997 6899999999999999997654 34455666667777777655432111
Q ss_pred -eeeccCccc------------------cceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC---e
Q 011126 344 -PIDVDKEKI------------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---F 401 (493)
Q Consensus 344 -~~~~~~~~~------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g---~ 401 (493)
.+....... .....+.++.++.+.+|+..... .......+|...|..++|++++ +
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---EEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc---eEEEEeccccCcccceEEccCCCCcE
Confidence 111111000 01122345556667777654322 1233456799999999999875 7
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEcc
Q 011126 402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (493)
Q Consensus 402 l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~sp 480 (493)
+++++.|++|++||+++++++..+. |...|++++|+| ++++|++|+.||+|+|||+++.+.+....+...|++++|+|
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 266 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 266 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC
Confidence 8999999999999999999988886 999999999999 99999999999999999999999887777778999999999
Q ss_pred CCCEEEEee
Q 011126 481 DGKVRQNSA 489 (493)
Q Consensus 481 dG~~l~s~s 489 (493)
++.+++++.
T Consensus 267 ~~~~~~~~~ 275 (340)
T 4aow_A 267 NRYWLCAAT 275 (340)
T ss_dssp SSSEEEEEE
T ss_pred CCceeeccC
Confidence 997776553
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-22 Score=209.84 Aligned_cols=230 Identities=11% Similarity=0.011 Sum_probs=177.0
Q ss_pred eeeeecccccceeccCCCeE-EeeecCCeEEEEECC--Cccccccccccceeee--cccCCEEEEEEccCCCEEEEEECC
Q 011126 231 MARIIDRHGSATLKPGDHEL-TLGQRMRRVRVHPVK--KQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGED 305 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~l-asgs~dg~V~vwd~~--~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~D 305 (493)
...+...+.+++|+|++++| ++|+.||.|+||++. ... ..+.+. .|...|++++|+|++++|++|+.|
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 170 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-------VLKLRKRFCFSKRPNAISIAEDDTTVIIADKF 170 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-------CEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-------eeeeeecccCCCCceEEEEcCCCCEEEEEeCC
Confidence 34566678889999999996 899999999999987 332 112333 577899999999999999999999
Q ss_pred CcEEEEecCCCeeee----eeeccCCCCceEEEeeCC-CCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126 306 GTVRVWKVIEHERLD----GFDVQDTDPSCLYFTINH-LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (493)
Q Consensus 306 g~V~iWdl~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 380 (493)
|.|++|++.++.... .+..+...+.++.|.++. .. ...+.++.++.+.+|+... .+.
T Consensus 171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~--------------~~l~s~~~d~~i~vwd~~~----~~~ 232 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH--------------QFIITSDRDEHIKISHYPQ----CFI 232 (450)
T ss_dssp SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC--------------EEEEEEETTSCEEEEEESC----TTC
T ss_pred CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC--------------cEEEEEcCCCcEEEEECCC----Cce
Confidence 999999998877554 566666667777777651 11 1223445567777776543 233
Q ss_pred eEE-EecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC--------------------------CCcEE
Q 011126 381 LHE-FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--------------------------NNYVT 432 (493)
Q Consensus 381 ~~~-~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h--------------------------~~~V~ 432 (493)
+.. +.+|...|.+++|+ ++ +|++++.|++|+|||+.+++++..+.. ...|.
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 444 55899999999999 88 999999999999999999998887751 24689
Q ss_pred EEEEccCCCCEEEEEe-CCCeEEEEeC--CCC---eEEE-ecCCCCCeEEEEEccCCCEEEEe
Q 011126 433 SVAFNPVDDNYFISGS-IDGKVRIWEV--RRC---QVVD-YTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 433 ~v~fsp~d~~~l~sgs-~Dg~V~IWdl--~~~---~~~~-~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
+++|+| ++++|++++ .|+.|+||++ ..+ +.+. +..+ ..|++++|+|++.+++++
T Consensus 312 ~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~ 372 (450)
T 2vdu_B 312 KIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLD 372 (450)
T ss_dssp EEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEEC
T ss_pred EEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEe
Confidence 999999 999999999 8999999999 554 4443 4444 889999999965444433
No 102
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.91 E-value=1.3e-22 Score=216.39 Aligned_cols=238 Identities=16% Similarity=0.230 Sum_probs=191.9
Q ss_pred eeeeecc-cccceecc--CCCeEEeeecCCeEEEEECCCcccc-ccccccceeeecccCCEEEEEEccCCCEEEEEECC-
Q 011126 231 MARIIDR-HGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED- 305 (493)
Q Consensus 231 ~~~~~~~-~~~~~fsp--~g~~lasgs~dg~V~vwd~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D- 305 (493)
+..|... +.+++|+| ++++|++|+.||.|+||++...... .........+.+|...|.+++|+|++++|++++.+
T Consensus 59 ~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 138 (615)
T 1pgu_A 59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 138 (615)
T ss_dssp ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS
T ss_pred EecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCC
Confidence 4456677 88899999 9999999999999999998633100 00112234678899999999999999999999988
Q ss_pred ---CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126 306 ---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 306 ---g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
+.|++|| .++.+..+..+...+.++.|.+.... ..+.++.++.+.+|+.... +.+.
T Consensus 139 ~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~l~~~~~d~~v~vwd~~~~----~~~~ 197 (615)
T 1pgu_A 139 DNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPM---------------RSMTVGDDGSVVFYQGPPF----KFSA 197 (615)
T ss_dssp SCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSC---------------EEEEEETTTEEEEEETTTB----EEEE
T ss_pred CCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCc---------------EEEEEeCCCcEEEEeCCCc----ceee
Confidence 6888888 56677777777777777776655432 2344566778888876554 3467
Q ss_pred EEecCCC---CEeEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEe-----cCCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126 383 EFQGHSS---EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-----SHNNYVTSVAFNPVDDNYFISGSIDGK 452 (493)
Q Consensus 383 ~~~~h~~---~V~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~-----~h~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (493)
.+.+|.. .|.+++|+|+ + +|++++.|+.|++||+.+++.+..+ .|...|++++|+ ++++|++++.||.
T Consensus 198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADAT 275 (615)
T ss_dssp EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSE
T ss_pred eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCc
Confidence 7888999 9999999999 8 9999999999999999999999999 799999999999 7899999999999
Q ss_pred EEEEeCCCCeEEE-ecCC----CCCeEEEEEccCCCEEEEeecCC
Q 011126 453 VRIWEVRRCQVVD-YTDI----REIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 453 V~IWdl~~~~~~~-~~~~----~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|++||+.+++.+. +..+ ...+.++.|. +++++++++.+.
T Consensus 276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g 319 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG 319 (615)
T ss_dssp EEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred EEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence 9999999988774 3333 4678888885 899999988765
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.91 E-value=1.5e-22 Score=197.40 Aligned_cols=210 Identities=19% Similarity=0.216 Sum_probs=156.6
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc----------------------------------ccccce
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------SLYTGQ 278 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~----------------------------------~~~~~~ 278 (493)
.|...+.+++|+|++++||+|+.||+|+||++........ ......
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~ 144 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 144 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE
Confidence 3445677899999999999999999999999876442110 011123
Q ss_pred eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeee----eeccCCCCceEEEeeCCCCceeeeeccCccccc
Q 011126 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG----FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (493)
Q Consensus 279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (493)
.+.+|...+..+.|.+++++|++++.|++|++||+.+++.... ...+...+..+.+.+.. ...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~ 211 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-------------SNV 211 (318)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTS-------------TTE
T ss_pred EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCC-------------CcE
Confidence 4678999999999999999999999999999999987653221 11222222222222222 222
Q ss_pred eeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEE--eCCCeEEEEECCCCcEEEEec-CCCc
Q 011126 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS--SADKTVRLWQVGIDRCLRVFS-HNNY 430 (493)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sg--s~Dg~V~lWd~~~~~~~~~~~-h~~~ 430 (493)
.....++.++.+.+|+..... ......|...+..+.|+|.+ .++++ +.|++|+|||+.+++++..+. |.+.
T Consensus 212 ~~~~~~~~~~~i~lwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~ 286 (318)
T 4ggc_A 212 LATGGGTSDRHIRIWNVCSGA-----CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR 286 (318)
T ss_dssp EEEEECTTTCEEEEEETTTCC-----EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC
T ss_pred EEEEecCCCCEEEEEeccccc-----ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC
Confidence 233455667777777665432 33445678889999999998 55544 479999999999999999997 9999
Q ss_pred EEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
|++++|+| ++++|+||+.||+|+|||+.+.
T Consensus 287 V~~l~~sp-dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 287 VLSLTMSP-DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEEECT-TSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEEEcC-CCCEEEEEecCCeEEEEECCCC
Confidence 99999999 9999999999999999999764
No 104
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=6.4e-23 Score=200.63 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=129.9
Q ss_pred cCCCeEEeee--cCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc---CCCEEEEEECCCcEEEEecCCCeee
Q 011126 245 PGDHELTLGQ--RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLASGGEDGTVRVWKVIEHERL 319 (493)
Q Consensus 245 p~g~~lasgs--~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~V~iWdl~~~~~~ 319 (493)
++++++.++. .|+.|++|++....+. ...+.+|...+..++|+| ++.+||+|+.|++|+|||+.+++++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~------~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l 216 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGG------KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL 216 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCE------EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCce------eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE
Confidence 3444444422 4888888887543222 124568888999999999 7799999999999999999999877
Q ss_pred eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
.++..+.. |...+.+++|+|+
T Consensus 217 ~tL~g~~~-----------------------------------------------------------~v~~v~~vafSpd 237 (356)
T 2w18_A 217 KKMHIDDS-----------------------------------------------------------YQASVCHKAYSEM 237 (356)
T ss_dssp EEEECCC--------------------------------------------------------------CCCEEEEEEET
T ss_pred EEEcCCCc-----------------------------------------------------------ceeeeEEEEECCC
Confidence 76643211 1124455566665
Q ss_pred C-e------------EEEEeCCCeEEEEECCCCcEEEEe------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 400 G-F------------LLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 400 g-~------------l~sgs~Dg~V~lWd~~~~~~~~~~------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
| + +++|+.|++|++||..+++++.++ .|...+.+..+ ++.++++|+.|++|+|||+.+
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~t 314 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLL 314 (356)
T ss_dssp TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTT
T ss_pred CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCC
Confidence 5 3 478899999999999999988765 25555544444 468999999999999999999
Q ss_pred CeEEE-ecCCCCCeE-EEEEccCCCEEEEeecCCC
Q 011126 461 CQVVD-YTDIREIVS-AVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 461 ~~~~~-~~~~~~~I~-sv~~spdG~~l~s~s~d~~ 493 (493)
++++. +.+|...+. .++|+|||++|++|+.|++
T Consensus 315 Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 315 GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 99885 567776554 6899999999999998874
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.4e-23 Score=207.82 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=163.8
Q ss_pred ceeeeecccccceeccC--CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECC
Q 011126 230 AMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGED 305 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~D 305 (493)
.+..|...+.+++|+|+ +.+|++|+.||.|+||++..... .....+.+|...|.+++|+|+ +.+|++++.|
T Consensus 50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce-----eEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 34557778888999877 99999999999999999875431 123456789999999999999 9999999999
Q ss_pred CcEEEEecCCCeee--eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 306 GTVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 306 g~V~iWdl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
+.|++||+.+.... ..+..+...+.++.+.+........ ..........+.++.++.+.+|+.............
T Consensus 125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 201 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE---HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201 (379)
T ss_dssp SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred CcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc---ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence 99999999887433 3344455555556555531100000 000001223445566777888866433322334667
Q ss_pred EecCCCCEeEEEEeCC---C-eEEEEeCCCeEEEEECCCCc---EEEEe---cCCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126 384 FQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDR---CLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKV 453 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~---g-~l~sgs~Dg~V~lWd~~~~~---~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (493)
+.+|...|.+++|+|+ + +|++++.|+.|+|||+.++. ....+ .|...|++++|+| ++++|++++.||.|
T Consensus 202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKV 280 (379)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSE
T ss_pred EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcE
Confidence 8899999999999999 8 99999999999999999864 22222 2889999999999 99999999999999
Q ss_pred EEEeCC
Q 011126 454 RIWEVR 459 (493)
Q Consensus 454 ~IWdl~ 459 (493)
+||++.
T Consensus 281 ~iw~~~ 286 (379)
T 3jrp_A 281 TLWKEN 286 (379)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 999987
No 106
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4e-22 Score=193.72 Aligned_cols=260 Identities=18% Similarity=0.148 Sum_probs=189.5
Q ss_pred CcceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhh
Q 011126 144 HAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKV 220 (493)
Q Consensus 144 ~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~ 220 (493)
+...+++|++++........ |... +..+.+ ++.|.....++.+. +|.+......
T Consensus 38 dg~v~vw~~~~~~~~~~~~~----~~~~--v~~~~~~~~~~~l~~~~~dg~i~-----~~~~~~~~~~------------ 94 (313)
T 3odt_A 38 DGTVRLWSKDDQWLGTVVYT----GQGF--LNSVCYDSEKELLLFGGKDTMIN-----GVPLFATSGE------------ 94 (313)
T ss_dssp TSEEEEEEESSSEEEEEEEE----CSSC--EEEEEEETTTTEEEEEETTSCEE-----EEETTCCTTS------------
T ss_pred CCcEEEEECCCCEEEEEeec----CCcc--EEEEEECCCCCEEEEecCCCeEE-----EEEeeecCCC------------
Confidence 34578888877765443221 1111 334433 67777777766655 6655432110
Q ss_pred ccccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEE
Q 011126 221 KRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYL 299 (493)
Q Consensus 221 k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~L 299 (493)
+....+..|...+.+++| ++.++++++.|+.|++|+... ....+..|...|.++.|.| ++.+|
T Consensus 95 -----~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 95 -----DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGS---------LVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp -----CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTE---------EEEEEECCSSCEEEEEEEETTTTEE
T ss_pred -----CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCc---------EEEecccCCCceeEEEEccCCCCEE
Confidence 112234455566666777 678999999999999999221 2235678999999999999 99999
Q ss_pred EEEECCCcEEEEecCCCeeeeeeec-cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 300 ASGGEDGTVRVWKVIEHERLDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 300 asgs~Dg~V~iWdl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
++++.||.|++|| ..+....+.. +...+.++.+.+... .+.++.++.+.+|+....
T Consensus 159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------~~~~~~dg~i~i~d~~~~---- 215 (313)
T 3odt_A 159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-----------------FISCSNDGLIKLVDMHTG---- 215 (313)
T ss_dssp EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-----------------EEEEETTSEEEEEETTTC----
T ss_pred EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-----------------EEEccCCCeEEEEECCch----
Confidence 9999999999999 4455555554 445555566555432 345566777888877643
Q ss_pred cceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd 457 (493)
+++..+.+|...|++++|+|++.|++++.|+.|++||+.+++++..+. |...|++++|+| ++. +++++.||.|++||
T Consensus 216 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 216 DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp CEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEE
T ss_pred hhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEe
Confidence 457788899999999999999999999999999999999999998886 888999999999 887 66799999999999
Q ss_pred CCCCeEEEec
Q 011126 458 VRRCQVVDYT 467 (493)
Q Consensus 458 l~~~~~~~~~ 467 (493)
+.+++.+...
T Consensus 294 ~~~~~~~~~~ 303 (313)
T 3odt_A 294 QEKSRWASED 303 (313)
T ss_dssp SCGGGCCC--
T ss_pred CCCCceeehh
Confidence 9988766433
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.2e-23 Score=203.61 Aligned_cols=227 Identities=12% Similarity=0.082 Sum_probs=159.1
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCcccc--ccccccceee-ecccCCEEEEEEcc--CCCEEEEEECCCcEEE
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--LSSLYTGQEF-LAHEGSILTMKFSL--DGQYLASGGEDGTVRV 310 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~--~~~~~~~~~l-~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~i 310 (493)
..+.++.++|+ +++++.|++|++|+....... +......+.+ .+|.+.|.+++|+| ++++|++|+.||+|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 45667889998 999999999999988753211 1111111122 36778999999999 9999999999999999
Q ss_pred EecCCCeeeeeeecc-CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce-EEEec-C
Q 011126 311 WKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL-HEFQG-H 387 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~-h 387 (493)
||+.+++.......+ ...+.++.+.+++ ...+.++.++.+.+|+.+... .+ ..+.+ |
T Consensus 154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg----------------~~lasg~~dg~i~iwd~~~~~----~~~~~~~~~h 213 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDS----------------LLLALYSPDGILDVYNLSSPD----QASSRFPVDE 213 (343)
T ss_dssp EESSSSCEEEEECCCSSCCCCEEEECTTS----------------CEEEEECTTSCEEEEESSCTT----SCCEECCCCT
T ss_pred EECCCCcEEEEEecCCCCceEEEEECCCC----------------CEEEEEcCCCEEEEEECCCCC----CCccEEeccC
Confidence 999998876555333 3345566665433 223456778888888876532 23 56777 9
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec----CCCcE--EEEEEccCCCCEEEEEeC-CCeEEEEeCC
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYV--TSVAFNPVDDNYFISGSI-DGKVRIWEVR 459 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V--~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~ 459 (493)
...|++++|+|++ +|++++ |++|+|||+++.+++..+. |...+ .+++|+| ++++|++++. |+.|+||++.
T Consensus 214 ~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 214 EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEc
Confidence 9999999999999 899999 5599999999987765543 33333 4699999 9999999998 9999999996
Q ss_pred CCeEE-EecCCCCCeEEEEEcc---CCCEEEEeecC
Q 011126 460 RCQVV-DYTDIREIVSAVCYCP---DGKVRQNSACN 491 (493)
Q Consensus 460 ~~~~~-~~~~~~~~I~sv~~sp---dG~~l~s~s~d 491 (493)
+.... .. .++..++|.| +++.+++++.|
T Consensus 292 ~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d 323 (343)
T 3lrv_A 292 KKTKNWTK----DEESALCLQSDTADFTDMDVVCGD 323 (343)
T ss_dssp TTTCSEEE----EEEEECCC----CCCCEEEEEEET
T ss_pred ccccceEe----cCceeEecCccccccceeEEEecC
Confidence 54321 11 3455555555 55555555443
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.90 E-value=1.8e-22 Score=207.31 Aligned_cols=216 Identities=17% Similarity=0.310 Sum_probs=172.3
Q ss_pred ccCceeeeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEEC
Q 011126 227 KLGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGE 304 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~ 304 (493)
....+..|...+.+++|+|++. +|++|+.||.|+||++...............+.+|...|.+++|+| ++.+|++++.
T Consensus 173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~ 252 (430)
T 2xyi_A 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 252 (430)
T ss_dssp CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence 3445667778888899999998 9999999999999999874433223333456779999999999999 7789999999
Q ss_pred CCcEEEEecCCC---eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126 305 DGTVRVWKVIEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (493)
Q Consensus 305 Dg~V~iWdl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (493)
||.|++||+.++ +.+..+..+...+.++.|.+.... ..+.++.++.+.+|+.+.. ..++
T Consensus 253 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~---------------~l~tg~~dg~v~vwd~~~~---~~~~ 314 (430)
T 2xyi_A 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF---------------ILATGSADKTVALWDLRNL---KLKL 314 (430)
T ss_dssp TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT---------------EEEEEETTSEEEEEETTCT---TSCS
T ss_pred CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC---------------EEEEEeCCCeEEEEeCCCC---CCCe
Confidence 999999999877 455566666666666666554432 2335566778888877642 2467
Q ss_pred EEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC--------------CcEEEEec-CCCcEEEEEEccCCCC-E
Q 011126 382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--------------DRCLRVFS-HNNYVTSVAFNPVDDN-Y 443 (493)
Q Consensus 382 ~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~--------------~~~~~~~~-h~~~V~~v~fsp~d~~-~ 443 (493)
..+.+|...|++++|+|++ +|++++.|++|+|||+.. ...+..+. |...|++++|+| ++. +
T Consensus 315 ~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~ 393 (430)
T 2xyi_A 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWI 393 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS-SSTTE
T ss_pred EEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC-CCCCE
Confidence 8889999999999999998 799999999999999987 24555554 889999999999 777 9
Q ss_pred EEEEeCCCeEEEEeCCCC
Q 011126 444 FISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 444 l~sgs~Dg~V~IWdl~~~ 461 (493)
|++++.||.|+||++...
T Consensus 394 l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 394 ICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEETTSEEEEEEECHH
T ss_pred EEEEECCCCEEEeEcccc
Confidence 999999999999999754
No 109
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.90 E-value=6.4e-22 Score=203.72 Aligned_cols=224 Identities=20% Similarity=0.361 Sum_probs=184.1
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+|.+.+.. ++++++++|++|+.||.|++|++.... ....+.+|.+.|+++.|+ +.+|++|+.||+|+
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLK 182 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc-------EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence 35556555432 577789999999999999999987543 234577999999999997 66999999999999
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+||+.+++.+..+..+...+.++.+. ....+.++.++.+.+|+... .+.+..+.+|..
T Consensus 183 vwd~~~~~~~~~~~~h~~~v~~~~~~------------------~~~l~s~s~dg~i~~wd~~~----~~~~~~~~~~~~ 240 (445)
T 2ovr_B 183 VWNAETGECIHTLYGHTSTVRCMHLH------------------EKRVVSGSRDATLRVWDIET----GQCLHVLMGHVA 240 (445)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE------------------TTEEEEEETTSEEEEEESSS----CCEEEEEECCSS
T ss_pred EEECCcCcEEEEECCCCCcEEEEEec------------------CCEEEEEeCCCEEEEEECCC----CcEEEEEcCCcc
Confidence 99999999888887776655555542 11245667788888887764 345778889999
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~ 466 (493)
.|.+++| ++ ++++++.|+.|++||+++++++..+. |...|+++.| ++.+|++|+.||.|++||+++++.+ .+
T Consensus 241 ~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 315 (445)
T 2ovr_B 241 AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTL 315 (445)
T ss_dssp CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 9999999 45 99999999999999999999999887 8999999999 5789999999999999999998877 47
Q ss_pred cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 467 TDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 467 ~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
..|...+.++.+ +++++++++.|+
T Consensus 316 ~~~~~~v~~~~~--~~~~l~~~~~dg 339 (445)
T 2ovr_B 316 TGHQSLTSGMEL--KDNILVSGNADS 339 (445)
T ss_dssp CCCCSCEEEEEE--ETTEEEEEETTS
T ss_pred cCCcccEEEEEE--eCCEEEEEeCCC
Confidence 788888887776 577999998775
No 110
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.90 E-value=3.5e-22 Score=204.37 Aligned_cols=264 Identities=18% Similarity=0.223 Sum_probs=192.0
Q ss_pred cceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhc
Q 011126 145 AACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVK 221 (493)
Q Consensus 145 ~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k 221 (493)
...+|||+.+|+..-+-.. .+|... |..|.+ |+.|+....++++. +|.+....
T Consensus 125 ~tV~lWd~~tg~~~~~~~~--~~~~~~--V~sv~fspdg~~lasgs~Dg~v~-----iWd~~~~~--------------- 180 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQM--EQPGEY--ISSVAWIKEGNYLAVGTSSAEVQ-----LWDVQQQK--------------- 180 (420)
T ss_dssp TEEEEEETTTCCEEEEEEC--CSTTCC--EEEEEECTTSSEEEEEETTSCEE-----EEETTTTE---------------
T ss_pred CEEEEEECCCCCEEEEEEe--cCCCCc--EEEEEECCCCCEEEEEECCCeEE-----EEEcCCCc---------------
Confidence 3578999999986543222 233333 566655 88899988888877 88764321
Q ss_pred cccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE
Q 011126 222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301 (493)
Q Consensus 222 ~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las 301 (493)
.+..+.+|...+. ++++++.+|++|+.|+.+++|+....... ...+.+|...+..+.|+|++++|++
T Consensus 181 -----~~~~~~~h~~~v~--~~s~~~~~l~sgs~d~~i~~~d~~~~~~~------~~~~~~h~~~~~~~~~~~~g~~l~s 247 (420)
T 4gga_A 181 -----RLRNMTSHSARVG--SLSWNSYILSSGSRSGHIHHHDVRVAEHH------VATLSGHSQEVCGLRWAPDGRHLAS 247 (420)
T ss_dssp -----EEEEECCCSSCEE--EEEEETTEEEEEETTSEEEEEETTSSSCE------EEEEECCSSCEEEEEECTTSSEEEE
T ss_pred -----EEEEEeCCCCceE--EEeeCCCEEEEEeCCCceeEeeeccccee------eEEecccccceeeeeecCCCCeeee
Confidence 1112334444444 45556789999999999999998754432 2357899999999999999999999
Q ss_pred EECCCcEEEEecCCCee----eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec
Q 011126 302 GGEDGTVRVWKVIEHER----LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (493)
Q Consensus 302 gs~Dg~V~iWdl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (493)
++.|+.|++|++.+++. +.....+...+.++.+.+..... .....++.|+.+.+|+.....
T Consensus 248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~-------------la~~~gs~D~~I~iwd~~t~~-- 312 (420)
T 4gga_A 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV-------------LATGGGTSDRHIRIWNVCSGA-- 312 (420)
T ss_dssp EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE-------------EEEEECTTTCEEEEEETTTTE--
T ss_pred eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE-------------EEEEeecCCCEEEEEeCCccc--
Confidence 99999999999987653 22333333444444444433322 223356678888888876533
Q ss_pred ccceEEEecCCCCEeEEEEeCCC-eEEEEe--CCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKV 453 (493)
Q Consensus 378 ~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs--~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (493)
.+..+. +...+.++.|+|++ .+++++ .|++|+|||+.+++++..+. |.+.|++++|+| ++++|+||+.||+|
T Consensus 313 --~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tv 388 (420)
T 4gga_A 313 --CLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETL 388 (420)
T ss_dssp --EEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEE
T ss_pred --cceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeE
Confidence 244444 44678999999998 666554 79999999999999999987 999999999999 99999999999999
Q ss_pred EEEeCCCCeEE
Q 011126 454 RIWEVRRCQVV 464 (493)
Q Consensus 454 ~IWdl~~~~~~ 464 (493)
+|||+......
T Consensus 389 riWdv~~~~~~ 399 (420)
T 4gga_A 389 RLWRCFELDPA 399 (420)
T ss_dssp EEECCSCSSCC
T ss_pred EEEECCCCCcc
Confidence 99999865443
No 111
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.90 E-value=5.3e-23 Score=238.06 Aligned_cols=241 Identities=22% Similarity=0.226 Sum_probs=197.4
Q ss_pred ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc------------------------------cccccee
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS------------------------------SLYTGQE 279 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~------------------------------~~~~~~~ 279 (493)
.+.+|...+.+++|+|++.+|++++.||.|++|+......... .......
T Consensus 877 ~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 3456777788899999999999999999999999753211000 0001111
Q ss_pred eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeee
Q 011126 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (493)
Q Consensus 280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (493)
...+...|.+++|+|+++++++|+.||.|++|++.+++....+..+...+.++.+.+++. ..+.
T Consensus 957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~----------------~l~s 1020 (1249)
T 3sfz_A 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK----------------TLIS 1020 (1249)
T ss_dssp EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS----------------CEEE
T ss_pred EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC----------------EEEE
Confidence 223456899999999999999999999999999999998888888888888888766542 2234
Q ss_pred cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcc
Q 011126 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP 438 (493)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp 438 (493)
++.++.+.+|+..... ...+.+|...|.+++|+|++.+++++.|++|++||+.+++++..+. |...|++++|+|
T Consensus 1021 ~~~dg~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGD-----YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095 (1249)
T ss_dssp ECSSSBEEEEETTTTE-----EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECS
T ss_pred EcCCCEEEEEECCCCc-----eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECC
Confidence 5667778888765433 2235679999999999998899999999999999999999988887 999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 439 VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 439 ~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
++++|++++.||+|++||+.+++.+ .+..|...|++++|+|||++|++++.|+
T Consensus 1096 -d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1096 -DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp -SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred -CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 9999999999999999999988766 4778999999999999999999999875
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=2e-22 Score=207.08 Aligned_cols=223 Identities=20% Similarity=0.365 Sum_probs=178.1
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+.+|...+.+++| ++.+|++|+.||.|++|++.... ....+.+|...|.+++|+ +.+|++|+.||.|++
T Consensus 169 ~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~v 237 (435)
T 1p22_A 169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-------MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAV 237 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-------EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEE
T ss_pred EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-------EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEE
Confidence 3445566666666 88999999999999999987553 234678899999999997 459999999999999
Q ss_pred EecCCCeee---eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126 311 WKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (493)
Q Consensus 311 Wdl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (493)
||+.++... ..+..+...+.++.+ .....+.++.++.+.+|+.... +.+..+.+|
T Consensus 238 wd~~~~~~~~~~~~~~~~~~~v~~~~~------------------~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~ 295 (435)
T 1p22_A 238 WDMASPTDITLRRVLVGHRAAVNVVDF------------------DDKYIVSASGDRTIKVWNTSTC----EFVRTLNGH 295 (435)
T ss_dssp EECSSSSCCEEEEEECCCSSCEEEEEE------------------ETTEEEEEETTSEEEEEETTTC----CEEEEEECC
T ss_pred EeCCCCCCceeeeEecCCCCcEEEEEe------------------CCCEEEEEeCCCeEEEEECCcC----cEEEEEcCC
Confidence 999887654 233333333333332 1123456677888888887653 457788899
Q ss_pred CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe----
Q 011126 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---- 462 (493)
Q Consensus 388 ~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~---- 462 (493)
...|.+++|++ .++++|+.|++|++||+++++++..+. |...|++++| ++.+|++|+.||.|+|||+.+++
T Consensus 296 ~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~ 371 (435)
T 1p22_A 296 KRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRA 371 (435)
T ss_dssp SSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred CCcEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccc
Confidence 99999999953 399999999999999999999999887 9999999999 56899999999999999997654
Q ss_pred -----EE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 463 -----VV-DYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 463 -----~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
.+ .+..|...|++++| ++++|++++.|+
T Consensus 372 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg 405 (435)
T 1p22_A 372 PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD 405 (435)
T ss_dssp CTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred cccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC
Confidence 44 57889999999999 788999998775
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.6e-23 Score=211.91 Aligned_cols=223 Identities=8% Similarity=0.050 Sum_probs=167.3
Q ss_pred ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC-----CEEEEEEccCCCEEEEEECCCcEE
Q 011126 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-----SILTMKFSLDGQYLASGGEDGTVR 309 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~-----~I~~l~fspdg~~Lasgs~Dg~V~ 309 (493)
.+.+.+++|+|+|.+||+++.||.|+||+... ....+. |.. .|.+++|||||++||+|+.||+|+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE---------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 46778899999999999999999999999543 112334 554 599999999999999999999999
Q ss_pred EEecCCCee-------eeeee----ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 310 VWKVIEHER-------LDGFD----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 310 iWdl~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
|||+.++.. +..+. .+...+.++.|++++ .+..+.+..+.+|+...... .
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg------------------Laass~D~tVrlWd~~~~~~-~ 215 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV------------------LVAALSNNSVFSMTVSASSH-Q 215 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE------------------EEEEETTCCEEEECCCSSSS-C
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc------------------EEEEeCCCeEEEEECCCCcc-c
Confidence 999988752 34442 223344555554432 23455678888888754331 1
Q ss_pred cceEEE-ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcE-EEEecCCCcEEEEEE--ccCCCCEEEEEeCCCeEE
Q 011126 379 KPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC-LRVFSHNNYVTSVAF--NPVDDNYFISGSIDGKVR 454 (493)
Q Consensus 379 ~~~~~~-~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~-~~~~~h~~~V~~v~f--sp~d~~~l~sgs~Dg~V~ 454 (493)
...+++ .+|...|.+++|+ +++||+++ +++|++||+..++. ...++|.+.|..|+| +| ++..|++++.||+ +
T Consensus 216 ~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-k 291 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-K 291 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-E
T ss_pred cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-E
Confidence 123456 4788999999999 44888887 69999999998888 455589999999999 99 9999999999999 9
Q ss_pred EEeCCCCe------EE--------Ee---------cCCCCCeEEEEEccCCCEEEEeec
Q 011126 455 IWEVRRCQ------VV--------DY---------TDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 455 IWdl~~~~------~~--------~~---------~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+|....-+ ++ .| ..+...|.+++|+|||+.+|+++.
T Consensus 292 lw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 292 VLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 99974211 10 01 112234899999999999998863
No 114
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.7e-21 Score=191.95 Aligned_cols=215 Identities=18% Similarity=0.254 Sum_probs=165.9
Q ss_pred ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCC--------ceeeeecc
Q 011126 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS--------QLIPIDVD 348 (493)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 348 (493)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..+...+.++.+.++... .+..++..
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 3468899999999999999999999999999999999999999999888887777777664321 12222222
Q ss_pred Ccccccee-----------------eeecCCC-----ceEEEcCCCcee-------ecccceEEEecCCC--CEeEEEEe
Q 011126 349 KEKIDKTK-----------------SLRKSSD-----LTCVVLPPKVFR-------LLEKPLHEFQGHSS--EVLDLSWS 397 (493)
Q Consensus 349 ~~~~~~~~-----------------~~~~s~~-----~~~~~~~~~~~~-------~~~~~~~~~~~h~~--~V~~l~~s 397 (493)
........ .+....+ +.+.+|+..... ....++..+..|.. .+.+++|+
T Consensus 105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 105 NGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred CCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 21111110 0111111 344444332211 11235566677777 99999999
Q ss_pred CCC-eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeE
Q 011126 398 KNG-FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (493)
Q Consensus 398 p~g-~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~ 474 (493)
|++ +|++++.|+.|++||+++ ...+..+. |...|++++|+| ++++|++++.||.|++||+++++.+....+...+.
T Consensus 185 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 263 (369)
T 3zwl_B 185 TKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLN 263 (369)
T ss_dssp GGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeecCCCCce
Confidence 999 999999999999999998 67777776 899999999999 99999999999999999999999887666889999
Q ss_pred EEEEccCCCEEEEeecCC
Q 011126 475 AVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 475 sv~~spdG~~l~s~s~d~ 492 (493)
.++|+|+++++++++.+.
T Consensus 264 ~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 264 TAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EEEECSSSSEEEEEECCC
T ss_pred eEEecCCCceEEEeecCC
Confidence 999999999999988653
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.2e-22 Score=200.15 Aligned_cols=185 Identities=11% Similarity=0.031 Sum_probs=147.0
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
..+.+++.+|++|+.||.|++||+....... .+. ...|.++.|+|+ +++++.|++|++|+......+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~-------~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTIT-------TIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEE-------EEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEE-------EEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence 4566788999999999999999987654221 222 467888889988 9999999999999975421111
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEeC-
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSK- 398 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp- 398 (493)
.+ .. .+.+..+ .+|...|.+++|+|
T Consensus 110 ~~-------------------------------------------------~~----~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 110 DS-------------------------------------------------KT----NKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp ET-------------------------------------------------TT----CCEEEEEECCCSSCEEEEECCC-
T ss_pred ec-------------------------------------------------CC----cceeEEeecCCCCCEEEEEcCCC
Confidence 00 00 0112222 36778999999999
Q ss_pred -CC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--EecC-CCC
Q 011126 399 -NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTD-IRE 471 (493)
Q Consensus 399 -~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~--~~~~-~~~ 471 (493)
++ +|++++.|++|++||+++++++..+. |...|++++|+| ++.+|++|+.||.|+|||+++++.+ .+.. |..
T Consensus 137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~ 215 (343)
T 3lrv_A 137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA 215 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC
Confidence 88 99999999999999999999977663 566899999999 9999999999999999999998765 5666 899
Q ss_pred CeEEEEEccCCCEEEEeecC
Q 011126 472 IVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 472 ~I~sv~~spdG~~l~s~s~d 491 (493)
.|++++|+|+|++|++++.+
T Consensus 216 ~v~~l~fs~~g~~l~s~~~~ 235 (343)
T 3lrv_A 216 KIKEVKFADNGYWMVVECDQ 235 (343)
T ss_dssp CEEEEEECTTSSEEEEEESS
T ss_pred CEEEEEEeCCCCEEEEEeCC
Confidence 99999999999999999844
No 116
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.88 E-value=1.1e-21 Score=197.90 Aligned_cols=210 Identities=14% Similarity=0.132 Sum_probs=160.1
Q ss_pred eeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC---CCEEEEEECCCc
Q 011126 232 ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGEDGT 307 (493)
Q Consensus 232 ~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~Dg~ 307 (493)
..|...+.+++|+| ++.+|++++.||.|++|++...... .. ..|...+.++.|+|. +.+|++++.||.
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA-------DV-FNFEETVYSHHMSPVSTKHCLVAVGTRGPK 167 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE-------EE-EECSSCEEEEEECSSCSSCCEEEEEESSSS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc-------ee-ccCCCceeeeEeecCCCCCcEEEEEcCCCe
Confidence 34667788899999 7789999999999999998854421 12 237888999999984 459999999999
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee-----------
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL----------- 376 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~----------- 376 (493)
|++||+.+++.+..+..+...+.++.+.+..... .+.++.++.+.+|+.+....
T Consensus 168 v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---------------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 232 (408)
T 4a11_B 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYI---------------LATASADSRVKLWDVRRASGCLITLDQHNGK 232 (408)
T ss_dssp EEEEESSSSCCCEEECCCCSCEEEEEECSSCTTE---------------EEEEETTSCEEEEETTCSSCCSEECCTTTTC
T ss_pred EEEEeCCCcceeeeecCCCCcEEEEEECCCCCcE---------------EEEEcCCCcEEEEECCCCCcccccccccccc
Confidence 9999999998888888777777777776655322 22345566677776543220
Q ss_pred -cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc----------------------------------
Q 011126 377 -LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---------------------------------- 420 (493)
Q Consensus 377 -~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~---------------------------------- 420 (493)
.......+.+|...|.+++|+|++ +|++++.|+.|++||+.+++
T Consensus 233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence 111122236799999999999999 99999999999999987543
Q ss_pred -------------EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 421 -------------CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 421 -------------~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
++..+. |...|++++|+| ++++|++|+.||.|++||+.+++.+.
T Consensus 313 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC-----
T ss_pred CCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccC
Confidence 334444 889999999999 99999999999999999999988764
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.88 E-value=1.1e-20 Score=193.22 Aligned_cols=236 Identities=10% Similarity=0.065 Sum_probs=178.5
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEE
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVW 311 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iW 311 (493)
.|...+.+++|+|++.++++++.++.|++|+..... ....+..|...+.+++|+|++++|+++ +.|+.|++|
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA-------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC-------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce-------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 445566778999999999999999999999987543 223466789999999999999988554 479999999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
|+.+++.+..+.... .+..+.+.+++. .++.......... ..++.+.+|+...... .....|...+
T Consensus 240 d~~~~~~~~~~~~~~-~~~~~~~~~~g~-~l~~~~~~~~~~~-------~~dg~i~~~d~~~~~~-----~~~~~~~~~~ 305 (433)
T 3bws_A 240 DRKTKLEIRKTDKIG-LPRGLLLSKDGK-ELYIAQFSASNQE-------SGGGRLGIYSMDKEKL-----IDTIGPPGNK 305 (433)
T ss_dssp ETTTTEEEEECCCCS-EEEEEEECTTSS-EEEEEEEESCTTC-------SCCEEEEEEETTTTEE-----EEEEEEEECE
T ss_pred ECCCCcEEEEecCCC-CceEEEEcCCCC-EEEEEECCCCccc-------cCCCeEEEEECCCCcE-----EeeccCCCCc
Confidence 999998877665432 233444433322 1222111111100 2466777777654322 2223456688
Q ss_pred eEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC---------------CCeEE
Q 011126 392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---------------DGKVR 454 (493)
Q Consensus 392 ~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---------------Dg~V~ 454 (493)
.+++|+|++ ++++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++|++++. ||.|+
T Consensus 306 ~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 306 RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEE
Confidence 999999998 55777999999999999999999999999999999999 9998888876 57999
Q ss_pred EEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 455 IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+||+.+++++........+.+++|+|+|++|++++.
T Consensus 385 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 385 VIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEET
T ss_pred EEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEEC
Confidence 999999998865555678999999999999988765
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.88 E-value=4.8e-21 Score=195.80 Aligned_cols=231 Identities=11% Similarity=0.091 Sum_probs=181.2
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
.+.+++|+|++.++++++.++.|++|+....... .......+.+|.+.|++++|+|+++++++++.|+.|++||+.++
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 3446899998888888999999999998865432 11112235689999999999999999999999999999999999
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
+.+..+..+...+.++.+.++... ..+....++.+.+|+..... .+..+.. ...+.+++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~i~~~d~~~~~----~~~~~~~-~~~~~~~~~ 261 (433)
T 3bws_A 202 AYKATVDLTGKWSKILLYDPIRDL---------------VYCSNWISEDISVIDRKTKL----EIRKTDK-IGLPRGLLL 261 (433)
T ss_dssp CEEEEEECSSSSEEEEEEETTTTE---------------EEEEETTTTEEEEEETTTTE----EEEECCC-CSEEEEEEE
T ss_pred eEEEEEcCCCCCeeEEEEcCCCCE---------------EEEEecCCCcEEEEECCCCc----EEEEecC-CCCceEEEE
Confidence 888888766666666666554321 11233345667777765332 2334443 345999999
Q ss_pred eCCC-eEEEEe--------CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCC-EEEEEeCCCeEEEEeCCCCeEEEe
Q 011126 397 SKNG-FLLSSS--------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVVDY 466 (493)
Q Consensus 397 sp~g-~l~sgs--------~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~IWdl~~~~~~~~ 466 (493)
+|++ +|++++ .|+.|++||+.+++.+..+.|...+.+++|+| +++ ++++++.|+.|++||+.+++++..
T Consensus 262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 9999 787777 58899999999999988888888999999999 776 557778999999999999988876
Q ss_pred cCCCCCeEEEEEccCCCEEEEeec
Q 011126 467 TDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 467 ~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
..+...+.+++|+|+|+++++++.
T Consensus 341 ~~~~~~~~~~~~s~dg~~l~~~~~ 364 (433)
T 3bws_A 341 IPVFDKPNTIALSPDGKYLYVSCR 364 (433)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEC
T ss_pred ecCCCCCCeEEEcCCCCEEEEEec
Confidence 668888999999999999888775
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=1.1e-21 Score=194.80 Aligned_cols=217 Identities=12% Similarity=0.126 Sum_probs=161.1
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEE--ccCCCEEEEEECCCcE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF--SLDGQYLASGGEDGTV 308 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f--spdg~~Lasgs~Dg~V 308 (493)
+..|...+.+++|+|++++|++++.||.|++|++...... .+.+|...|++++| +|++++|++++.||.|
T Consensus 82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI--------QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------EEEECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce--------eeccccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence 4556778888999999999999999999999999855421 25679999999999 8899999999999999
Q ss_pred EEEecCCCeeeeeeeccCCCCceEEEe------eCCCCceeeeeccCcc------------------------ccceeee
Q 011126 309 RVWKVIEHERLDGFDVQDTDPSCLYFT------INHLSQLIPIDVDKEK------------------------IDKTKSL 358 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~------------------------~~~~~~~ 358 (493)
++||+.+++.+..+..+.. ..++.+. ......+..+...... ......+
T Consensus 154 ~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 154 KFWDTRSSNPMMVLQLPER-CYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp EEECSSCSSCSEEEECSSC-EEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred EEEECCCCcEEEEEecCCC-ceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEE
Confidence 9999999988777765542 1111111 0011111111111100 0011155
Q ss_pred ecCCCceEEEcCCCceeecccceEEEecCCC------------CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe
Q 011126 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS------------EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF 425 (493)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~ 425 (493)
.++.++.+.+|+...... ...+..+.+|.. .|++++|+|++ +|++++.|+.|+|||+.+++++..+
T Consensus 233 ~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNP-AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp EEETTSEEEEEESSCSCH-HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred EecCCCcEEEEecCCCCc-cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence 667777888887654321 134566677765 79999999999 9999999999999999999999888
Q ss_pred c-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 426 S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 426 ~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
. |...|++++|+| ++.+|++++.|+..+.|++
T Consensus 312 ~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 312 EQLDQPISACCFNH-NGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CCCSSCEEEEEECT-TSSCEEEEECCCSTTCGGG
T ss_pred cCCCCCceEEEECC-CCCeEEEEecccccccccc
Confidence 6 899999999999 9999999999876555443
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.4e-22 Score=221.19 Aligned_cols=222 Identities=15% Similarity=0.134 Sum_probs=166.4
Q ss_pred ceeeeecccccceeccC--CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECC
Q 011126 230 AMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGED 305 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~D 305 (493)
.+.+|...+.+++|+|+ +.+|++|+.||.|++|++..... .....+.+|...|++++|+|+ +++|++|+.|
T Consensus 48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-----cccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 45567788888999988 99999999999999999875431 123456789999999999999 9999999999
Q ss_pred CcEEEEecCCCee--eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 306 GTVRVWKVIEHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 306 g~V~iWdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
|.|++||+.++.. ...+..+...+.++.+.+........ ..........+.++.++.+.+|+.+.......+...
T Consensus 123 g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~---~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE---HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc---cccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence 9999999987743 23334444455555554431100000 000011234456677888888876543333345677
Q ss_pred EecCCCCEeEEEEeCC---C-eEEEEeCCCeEEEEECCCCcE------EEEecCCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126 384 FQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDRC------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV 453 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~---g-~l~sgs~Dg~V~lWd~~~~~~------~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (493)
+.+|...|++++|+|+ + +|++++.|++|++||+.++.. .....|...|++++|+| ++++|++|+.||.|
T Consensus 200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I 278 (753)
T 3jro_A 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKV 278 (753)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCE
T ss_pred ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEE
Confidence 8899999999999999 8 999999999999999988631 12223889999999999 99999999999999
Q ss_pred EEEeCCC
Q 011126 454 RIWEVRR 460 (493)
Q Consensus 454 ~IWdl~~ 460 (493)
+||++..
T Consensus 279 ~vwd~~~ 285 (753)
T 3jro_A 279 TLWKENL 285 (753)
T ss_dssp ECCBCCS
T ss_pred EEEecCC
Confidence 9999974
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.87 E-value=1.2e-19 Score=182.68 Aligned_cols=223 Identities=11% Similarity=0.093 Sum_probs=168.8
Q ss_pred ccccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecC
Q 011126 237 RHGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVI 314 (493)
Q Consensus 237 ~~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~ 314 (493)
.+.+++|+|+++++ ++++.++.|++||...... .+.+..|. .|.+++|+|++++|+.++ .|+.|++||+.
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence 35679999999977 6777999999999875432 22344444 899999999999886554 67999999999
Q ss_pred CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE
Q 011126 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (493)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (493)
+++.+..+..+. .+..+.+.+++. ...+....++.+.+|+..... .+..+..| ..+.++
T Consensus 105 ~~~~~~~~~~~~-~~~~~~~s~dg~---------------~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~-~~~~~~ 163 (391)
T 1l0q_A 105 SNTVAGTVKTGK-SPLGLALSPDGK---------------KLYVTNNGDKTVSVINTVTKA----VINTVSVG-RSPKGI 163 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSS---------------EEEEEETTTTEEEEEETTTTE----EEEEEECC-SSEEEE
T ss_pred CCeEEEEEeCCC-CcceEEECCCCC---------------EEEEEeCCCCEEEEEECCCCc----EEEEEecC-CCcceE
Confidence 998877766443 233444433321 111234556677777765432 34445544 567999
Q ss_pred EEeCCC-eE-EEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe---CCCeEEEEeCCCCeEEEecCC
Q 011126 395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQVVDYTDI 469 (493)
Q Consensus 395 ~~sp~g-~l-~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~IWdl~~~~~~~~~~~ 469 (493)
+|+|++ +| ++++.++.|++||+.+++++..+.+...+.+++|+| ++++|++++ .++.|++||+.+++.+.....
T Consensus 164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 242 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence 999999 55 678889999999999999999998889999999999 999888888 689999999999988765444
Q ss_pred CCCeEEEEEccCCCEEEEee
Q 011126 470 REIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 470 ~~~I~sv~~spdG~~l~s~s 489 (493)
...+.+++|+|+|++|++++
T Consensus 243 ~~~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 243 GPDPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEE
T ss_pred CCCccEEEEccCCCEEEEEc
Confidence 55689999999999885554
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.86 E-value=1.6e-19 Score=181.89 Aligned_cols=213 Identities=13% Similarity=0.147 Sum_probs=165.2
Q ss_pred CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCCeeeeeeeccC
Q 011126 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQD 326 (493)
Q Consensus 248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~~~~~~~~~~~ 326 (493)
.++++++.++.|++|++..... .+.+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-------TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred EEEEEcCCCCEEEEEECCCCeE-------EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 4678899999999999875432 22455554 58999999999977 667799999999999999888776654
Q ss_pred CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EE
Q 011126 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LS 404 (493)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~s 404 (493)
.+..+.+.+++.. ..+....++.+.+|+..... .+..+. +...+.+++|+|++ +| ++
T Consensus 75 -~v~~~~~spdg~~---------------l~~~~~~~~~v~v~d~~~~~----~~~~~~-~~~~~~~~~~s~dg~~l~~~ 133 (391)
T 1l0q_A 75 -SPQGVAVSPDGKQ---------------VYVTNMASSTLSVIDTTSNT----VAGTVK-TGKSPLGLALSPDGKKLYVT 133 (391)
T ss_dssp -SEEEEEECTTSSE---------------EEEEETTTTEEEEEETTTTE----EEEEEE-CSSSEEEEEECTTSSEEEEE
T ss_pred -CccceEECCCCCE---------------EEEEECCCCEEEEEECCCCe----EEEEEe-CCCCcceEEECCCCCEEEEE
Confidence 4445555443321 11233445667777665432 234444 34578999999998 55 78
Q ss_pred EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEE-EEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC
Q 011126 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483 (493)
Q Consensus 405 gs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l-~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~ 483 (493)
++.|+.|++||+.+++.+..+.+...+.+++|+| ++++| ++++.|+.|++||+++++.+....+...+.+++|+|+|+
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT 212 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS
T ss_pred eCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCC
Confidence 8889999999999999999988777889999999 88877 677889999999999999887766778899999999999
Q ss_pred EEEEeec
Q 011126 484 VRQNSAC 490 (493)
Q Consensus 484 ~l~s~s~ 490 (493)
+|++++.
T Consensus 213 ~l~~~~~ 219 (391)
T 1l0q_A 213 KAYVTNV 219 (391)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9988873
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=1.3e-20 Score=184.33 Aligned_cols=161 Identities=11% Similarity=0.107 Sum_probs=121.1
Q ss_pred eeeeecccccceecc---CCCeEEeeecCCeEEEEECCCccccccccccceeeeccc---CCEEEEEEccCCCEE-----
Q 011126 231 MARIIDRHGSATLKP---GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE---GSILTMKFSLDGQYL----- 299 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp---~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~---~~I~~l~fspdg~~L----- 299 (493)
+..|...+..++|+| ++.+||+|+.|++|+|||+.+.+ ..+++.+|. ..|.+++|+|+|.++
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~ 246 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH 246 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-------EEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-------EEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence 445666677789999 77999999999999999998654 223455543 468888999999876
Q ss_pred -------EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC
Q 011126 300 -------ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (493)
Q Consensus 300 -------asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 372 (493)
++|+.|++|++||..+++.+..+...
T Consensus 247 ~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~----------------------------------------------- 279 (356)
T 2w18_A 247 PCAKESESLRSPVFQLIVINPKTTLSVGVMLYC----------------------------------------------- 279 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEEC-----------------------------------------------
T ss_pred CCCcceeeccCCCcEEEEEECCCCEEEEEEEee-----------------------------------------------
Confidence 56888999999999888765322100
Q ss_pred ceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEE-EEEEccCCCCEEEEEeC
Q 011126 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSI 449 (493)
Q Consensus 373 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~-~v~fsp~d~~~l~sgs~ 449 (493)
...+|...+.+..++ + ++++++.|++|+|||+.+++++.++. |...+. +++|+| ++++|++|+.
T Consensus 280 ----------~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~ 346 (356)
T 2w18_A 280 ----------LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQK 346 (356)
T ss_dssp ----------CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECT
T ss_pred ----------ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEEC
Confidence 012455555444454 5 89999999999999999999999996 766555 689999 9999999999
Q ss_pred CCeEEEEeC
Q 011126 450 DGKVRIWEV 458 (493)
Q Consensus 450 Dg~V~IWdl 458 (493)
|++|+|||+
T Consensus 347 D~TIklWd~ 355 (356)
T 2w18_A 347 DGNIFVYHY 355 (356)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEecC
Confidence 999999995
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.85 E-value=5.3e-20 Score=184.14 Aligned_cols=189 Identities=12% Similarity=0.128 Sum_probs=125.3
Q ss_pred eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeee
Q 011126 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (493)
Q Consensus 279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (493)
++.+|...|++++|+|||++|++|+.++ ++||++.+++........ ....+.+.+... ...+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------~~~~ 75 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTN---------------YVAF 75 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSS---------------EEEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCC---------------EEEE
Confidence 4578999999999999999999998775 789999887765544332 233333322211 1111
Q ss_pred ecCCCceEEEcCCCceeecccceEEEecCCCCEeE-------------------------------------EEEeCCCe
Q 011126 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD-------------------------------------LSWSKNGF 401 (493)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-------------------------------------l~~sp~g~ 401 (493)
.++.+..+.+|+..... ++..+. |...|.+ +++++ ++
T Consensus 76 ~~~~d~~v~iWd~~~~~----~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~ 149 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQ----DVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN-GL 149 (355)
T ss_dssp ECSSTTEEEEEETTTTE----EEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET-TE
T ss_pred EECCccEEEEEECCCCc----EEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc-cE
Confidence 22223344444332211 111111 2223333 34444 43
Q ss_pred EEE--EeCCCeEEEEECCCCc----------------EEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCe-EEEEeCCCC
Q 011126 402 LLS--SSADKTVRLWQVGIDR----------------CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRC 461 (493)
Q Consensus 402 l~s--gs~Dg~V~lWd~~~~~----------------~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~IWdl~~~ 461 (493)
++. |+.||+|++||+.++. ++..+ .|...|++++|+| ++++|++|+.||+ |+|||++++
T Consensus 150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTC
T ss_pred EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCC
Confidence 333 5789999999998765 14445 4999999999999 9999999999998 999999999
Q ss_pred eEEE-ec-C-CCCCeEEEEEccCCCEEEEeecCC
Q 011126 462 QVVD-YT-D-IREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 462 ~~~~-~~-~-~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+.+. +. + |...|++++|+|||++|++++.|+
T Consensus 229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW 262 (355)
T ss_dssp CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence 8775 44 4 899999999999999999999875
No 125
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.85 E-value=2e-20 Score=184.39 Aligned_cols=189 Identities=12% Similarity=0.043 Sum_probs=153.9
Q ss_pred eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe---eeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (493)
Q Consensus 280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (493)
..+|.+.|++++|+|++++|++++.||.|+||++.++. ....+..+...+.++.+.++... .
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~ 71 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL---------------Q 71 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE---------------E
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc---------------E
Confidence 35799999999999999999999999999999998776 23444455556666666654310 2
Q ss_pred eeecCCCceEEEcCC-CceeecccceEEEec--CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC---------CcEEE
Q 011126 357 SLRKSSDLTCVVLPP-KVFRLLEKPLHEFQG--HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---------DRCLR 423 (493)
Q Consensus 357 ~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~--h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~---------~~~~~ 423 (493)
.+.++.++.+.+|+. ... ....+.+ |...|.+++|+| + +|++++.|+.|++||+++ ++++.
T Consensus 72 l~~~~~dg~i~~wd~~~~~-----~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSP-----SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEEETTSCEEEECSSSSS-----SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEEcCCCeEEEEEeccCC-----ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 234456677888876 543 2466778 999999999999 7 999999999999999998 88888
Q ss_pred EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC-CeE---EEecCCCCCeEEEEEcc-CCCEEEEeecCC
Q 011126 424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQV---VDYTDIREIVSAVCYCP-DGKVRQNSACNF 492 (493)
Q Consensus 424 ~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~-~~~---~~~~~~~~~I~sv~~sp-dG~~l~s~s~d~ 492 (493)
.+.|...|++++|+| ++ |++++.|+.|++||+++ +.. .....+...|++++|+| +++++++++.++
T Consensus 146 ~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 146 NTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp SSSSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred EEeeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 888999999999998 55 99999999999999998 432 24567888999999999 999999998764
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.85 E-value=7.6e-21 Score=193.00 Aligned_cols=218 Identities=8% Similarity=0.005 Sum_probs=139.4
Q ss_pred Cceeeeecccccceecc--------CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EE
Q 011126 229 GAMARIIDRHGSATLKP--------GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YL 299 (493)
Q Consensus 229 ~~~~~~~~~~~~~~fsp--------~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~L 299 (493)
..+.+|.+.|.+++|+| ++++||+|+.|++|+|||+..... ...+.+|...|.+++|+|++. +|
T Consensus 130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-------~~~~~~~~~~v~~v~~~p~~~~~l 202 (393)
T 4gq1_A 130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-------ILAGYPLSSPGISVQFRPSNPNQL 202 (393)
T ss_dssp CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE-------EEEEEECSSCEEEEEEETTEEEEE
T ss_pred cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce-------eeeecCCCCCcEEEEECCCCCceE
Confidence 45677889999999998 899999999999999999864432 224567999999999999874 89
Q ss_pred EEEECCCcEEEEecCCCeeeeeeeccCCCCc--eEEEee----------CCCCceeeeeccCccccceeeeecCCCceEE
Q 011126 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPS--CLYFTI----------NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367 (493)
Q Consensus 300 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 367 (493)
++|+.|++|++||+.+++............. +..... .+...+..+.+.. ......+..+.+..+.
T Consensus 203 ~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~--~dg~~l~s~s~d~~i~ 280 (393)
T 4gq1_A 203 IVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG--SDGSGILAMCKSGAWL 280 (393)
T ss_dssp EEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET--TTTCEEEEECTTSEEE
T ss_pred EecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec--CCCCEEEEEeCCCCEE
Confidence 9999999999999998876544433222111 111111 1111111111110 1122345566777788
Q ss_pred EcCCCceeecc--------------c-ceEEEecCCCCEeEEEEeCC--C-eEEEEeCCCeEEEEECCCCcEEEEe-cCC
Q 011126 368 VLPPKVFRLLE--------------K-PLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVF-SHN 428 (493)
Q Consensus 368 ~~~~~~~~~~~--------------~-~~~~~~~h~~~V~~l~~sp~--g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~ 428 (493)
+|+........ . .......+... ....|+|. + ++++|+.|++|+|||+.++.++..+ .|.
T Consensus 281 vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 281 RWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL-LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp EEEC-------------------CCSCSEEEECSSCCS-SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred EEECccCCCCceEeeecCccccEEEccccccccccCcc-eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 87664322110 0 11112222222 23344443 3 6778889999999999998877665 488
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
..|++++|+| ++++||+++.+| +.+|.+
T Consensus 360 ~~V~svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 360 MPIVDFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred CcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 9999999999 999999999776 666654
No 127
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=3.5e-20 Score=190.73 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=145.0
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCcccc---------ccccccceeeecccCCEEEEEEccCCCEEE----EEE
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE---------LSSLYTGQEFLAHEGSILTMKFSLDGQYLA----SGG 303 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~---------~~~~~~~~~l~~H~~~I~~l~fspdg~~La----sgs 303 (493)
..+.+++++++.++++++.++ |+||+....... ...... .....|...|++++|+|+|++|+ +|+
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ-GLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC-CEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc-cccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 456689999999999999888 899875422110 000011 11234677899999999999999 788
Q ss_pred CCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 304 ~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
.|++|+|||+.++... ....... ...+..
T Consensus 116 ~d~~v~iwd~~~~~~~-----~~~~~~~----------------------------------------------~~~~~~ 144 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNE-----AKQQKRP----------------------------------------------FAYHKL 144 (434)
T ss_dssp TEEEEEEEEHHHHHCT-----TCSSCCC----------------------------------------------SEEEEC
T ss_pred CCceEEEEEccccccC-----CcCCcce----------------------------------------------eeeeec
Confidence 9999999998653100 0000000 001233
Q ss_pred EecCCCCEeEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 384 FQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
+.+|...|.+++|+|+ + +|++++.|++|+|||++++..+... .|...|++++|+| ++++|++|+.||+|++||++.
T Consensus 145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~ 223 (434)
T 2oit_A 145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL 223 (434)
T ss_dssp CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC
T ss_pred cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC
Confidence 5679999999999998 5 9999999999999999988665443 4889999999999 899999999999999999983
Q ss_pred CeEEEecC-------CCCCeEEEEEccCCCEEEEee
Q 011126 461 CQVVDYTD-------IREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 461 ~~~~~~~~-------~~~~I~sv~~spdG~~l~s~s 489 (493)
.....+.. |...|.+++|++++.++++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred cccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 22222222 233799999999998886544
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.83 E-value=9.1e-19 Score=179.09 Aligned_cols=190 Identities=13% Similarity=0.103 Sum_probs=152.2
Q ss_pred ceeeeecccccceeccCCCeEEeeecCC---eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECC
Q 011126 230 AMARIIDRHGSATLKPGDHELTLGQRMR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGED 305 (493)
Q Consensus 230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg---~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~D 305 (493)
.+..+...+.+++|+|+|++|++++.++ .|++||+..... ..+..|.+.+.+++|+|||++|+ +++.|
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--------~~l~~~~~~~~~~~~spdg~~la~~~~~~ 244 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAFSPDGSKLAFALSKT 244 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------EEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--------EEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence 3555667778899999999999998875 999999976542 13567888999999999999887 66666
Q ss_pred Cc--EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 306 GT--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 306 g~--V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
+. |++||+.+++. ..
T Consensus 245 g~~~i~~~d~~~~~~---------------------------------------------------------------~~ 261 (415)
T 2hqs_A 245 GSLNLYVMDLASGQI---------------------------------------------------------------RQ 261 (415)
T ss_dssp SSCEEEEEETTTCCE---------------------------------------------------------------EE
T ss_pred CCceEEEEECCCCCE---------------------------------------------------------------Ee
Confidence 65 88999876542 22
Q ss_pred EecCCCCEeEEEEeCCC-eEEEEeC-CC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEE
Q 011126 384 FQGHSSEVLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIW 456 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g-~l~sgs~-Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IW 456 (493)
+..|...+.+++|+|+| +|+.++. ++ .|.+||+.+++......+...+.+++|+| ++++|++++.+ ..|++|
T Consensus 262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~ 340 (415)
T 2hqs_A 262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQ 340 (415)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEE
T ss_pred CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEE
Confidence 34567788999999999 7777775 44 68888998887655445778999999999 99999988865 589999
Q ss_pred eCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 457 EVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 457 dl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
|+.+++...+..+. .+.+++|+|||++|++++.+.
T Consensus 341 d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 341 DLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp ETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred ECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 99999887766664 899999999999998887653
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.79 E-value=1.1e-17 Score=171.17 Aligned_cols=173 Identities=13% Similarity=0.057 Sum_probs=139.8
Q ss_pred CCeEEeeecC------CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC---cEEEEecCCCe
Q 011126 247 DHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIEHE 317 (493)
Q Consensus 247 g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~V~iWdl~~~~ 317 (493)
+..++.++.+ +.|++||+.... .+.+.+|...|.+++|+|||++|++++.++ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 5566665554 799999986422 235678999999999999999999999885 99999998765
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (493)
.. .+..|...+.+++|+
T Consensus 215 ~~---------------------------------------------------------------~l~~~~~~~~~~~~s 231 (415)
T 2hqs_A 215 VR---------------------------------------------------------------QVASFPRHNGAPAFS 231 (415)
T ss_dssp EE---------------------------------------------------------------EEECCSSCEEEEEEC
T ss_pred EE---------------------------------------------------------------EeecCCCcccCEEEc
Confidence 31 233466789999999
Q ss_pred CCC-eEE-EEeCCCe--EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-CC--eEEEEeCCCCeEEEecCCC
Q 011126 398 KNG-FLL-SSSADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIR 470 (493)
Q Consensus 398 p~g-~l~-sgs~Dg~--V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~IWdl~~~~~~~~~~~~ 470 (493)
|+| +|+ +++.++. |++||+.++++.....|...+.+++|+| ++++|++++. ++ .|++||+.+++...+..+.
T Consensus 232 pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~ 310 (415)
T 2hqs_A 232 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG 310 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC
Confidence 999 666 6766654 9999999988766556888999999999 9999998886 44 7888899998877777777
Q ss_pred CCeEEEEEccCCCEEEEeecC
Q 011126 471 EIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 471 ~~I~sv~~spdG~~l~s~s~d 491 (493)
..+.+++|+|||++|++++.+
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEEC
T ss_pred CcccCeEECCCCCEEEEEECc
Confidence 889999999999999988754
No 130
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=6.9e-18 Score=173.59 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=141.1
Q ss_pred ecccccceeccCCCeEE----eeecCCeEEEEECCCcc----ccccccccceeeecccCCEEEEEEccC-CCEEEEEECC
Q 011126 235 IDRHGSATLKPGDHELT----LGQRMRRVRVHPVKKQS----RELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGED 305 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~la----sgs~dg~V~vwd~~~~~----~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D 305 (493)
...+.+++|+|+|++|| +|+.|+.|+|||+.... .....+.....+.+|...|++++|+|+ +.+|++++.|
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 34577799999999999 78999999999986531 011122223456789999999999997 8899999999
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
|+|++||+.++.. +....
T Consensus 172 g~v~iwD~~~~~~--------------------------------------------------------------~~~~~ 189 (434)
T 2oit_A 172 GSIAVLQVTETVK--------------------------------------------------------------VCATL 189 (434)
T ss_dssp SCEEEEEESSSEE--------------------------------------------------------------EEEEE
T ss_pred CeEEEEEcCCCcc--------------------------------------------------------------eeecc
Confidence 9999999976532 11234
Q ss_pred cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--------CCCcEEEEEEccCCCCEEEE-EeCCCe---
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFIS-GSIDGK--- 452 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~s-gs~Dg~--- 452 (493)
+|...|++++|+|+| +|++|+.|++|++||++ +.....+. |...|.+++|++ ++.++++ ...||.
T Consensus 190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~ 267 (434)
T 2oit_A 190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLET 267 (434)
T ss_dssp CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSS
T ss_pred CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEEEccCCCccCC
Confidence 578899999999999 99999999999999998 55555443 223899999999 7777654 344543
Q ss_pred ---EEEEeCCCCe-----E-EEec-------CCCCCeEEEEEccCCCEEEEeec
Q 011126 453 ---VRIWEVRRCQ-----V-VDYT-------DIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 453 ---V~IWdl~~~~-----~-~~~~-------~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+++|++++.+ . ..+. ..+.+-..+.+-++.+++++++.
T Consensus 268 ~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~ 321 (434)
T 2oit_A 268 SPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA 321 (434)
T ss_dssp CCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred CCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence 9999998652 1 2222 22233344556688888887765
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=4.4e-18 Score=162.96 Aligned_cols=231 Identities=12% Similarity=0.031 Sum_probs=155.3
Q ss_pred eeeecccccceeccCCCeEEeeecCCeEEEEECCC-ccccccccccceeeecc-cCCEEEEEEccCCCEEEEEE--CCCc
Q 011126 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-QSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGG--EDGT 307 (493)
Q Consensus 232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~-~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs--~Dg~ 307 (493)
..+...+.+++|+|+|++|++++ ++.|++|++.. .... ..+..| ...|.+++|+|+|++|++++ .++.
T Consensus 38 ~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-------KVDTGFATICNNDHGISPDGALYAISDKVEFGK 109 (297)
T ss_dssp EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-------ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-------EeccccccccccceEECCCCCEEEEEEeCCCCc
Confidence 34556677899999999999986 88999999876 4321 112334 46789999999999999998 4455
Q ss_pred EEEEec--CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 308 VRVWKV--IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 308 V~iWdl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
++||.+ .++. ...+.... ....+.+.+++...++. ...++.+.+|... ........+.
T Consensus 110 ~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~---------------~~~~~~~~l~~~~---~~~~~~~~~~ 169 (297)
T 2ojh_A 110 SAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYC---------------GIRDQVFDIYSMD---IDSGVETRLT 169 (297)
T ss_dssp CEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEE---------------EEETTEEEEEEEE---TTTCCEEECC
T ss_pred ceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEE---------------ECCCCceEEEEEE---CCCCcceEcc
Confidence 666655 4433 22222222 22333333332211111 1112222222211 1122345566
Q ss_pred cCCCCEeEEEEeCCC-eEEEEe-CCCeEEEEECC-CCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCC-----------
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID----------- 450 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~-~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D----------- 450 (493)
.|...+.+++|+|++ +|+.++ .++.++||++. .+..+..+. |...+.+++|+| ++++|++++.+
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEE
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCc
Confidence 788899999999999 666555 68999999886 444455554 778899999999 99999988876
Q ss_pred CeEEEEeCCCCeEE---EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 451 GKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 451 g~V~IWdl~~~~~~---~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+.|++||+.+++.. ....|...+..++|+|||++|++++.+
T Consensus 249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 56999999987653 344677889999999999999888765
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.75 E-value=6.6e-16 Score=152.61 Aligned_cols=225 Identities=14% Similarity=0.078 Sum_probs=159.0
Q ss_pred cccceeccCCCeEE-eeecCCeEEEEECCCccccccccccceeeecccC---------CEEEEEEccCCCEEEEEE--CC
Q 011126 238 HGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---------SILTMKFSLDGQYLASGG--ED 305 (493)
Q Consensus 238 ~~~~~fsp~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~---------~I~~l~fspdg~~Lasgs--~D 305 (493)
...++|+|+|++++ +...++.|.+||....... ..+..+.. .+..+.|+|+|++|++++ .+
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 163 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-------GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE 163 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE-------EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE-------EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC
Confidence 44589999999555 4556799999998755421 12222221 278999999999887776 47
Q ss_pred CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
+.|.+||+.+++.+..+......+..+.+.+++.. ++ ....++.+.+|+...... +..+.
T Consensus 164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~---------------~~~~~~~i~~~d~~~~~~----~~~~~ 223 (353)
T 3vgz_A 164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR-LY---------------TTNADGELITIDTADNKI----LSRKK 223 (353)
T ss_dssp CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE-EE---------------EECTTSEEEEEETTTTEE----EEEEE
T ss_pred ceEEEEcCCCCceEEEecCCCCccceEEECCCCCE-EE---------------EEcCCCeEEEEECCCCeE----EEEEE
Confidence 89999999999988877644444555555554422 11 112244555565543322 22232
Q ss_pred ----cCCCCEeEEEEeCCC-eEEEE-eCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeC
Q 011126 386 ----GHSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEV 458 (493)
Q Consensus 386 ----~h~~~V~~l~~sp~g-~l~sg-s~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl 458 (493)
++...+..++|+|++ +++.+ ..++.|.+||+.+++.+..+..... ..++|+| ++++++.+ ..++.|.+||+
T Consensus 224 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~-dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 224 LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNP-ARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEET-TTTEEEEEETTTTEEEEEET
T ss_pred cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECC-CCCEEEEEECCCCeEEEEEC
Confidence 356678899999998 55554 4569999999999999888874433 5799999 88855554 47899999999
Q ss_pred CCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 459 RRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 459 ~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
.+++++........+..++|+|||++|+++...
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 302 KSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 999988766666688999999999988776653
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.73 E-value=5.2e-16 Score=164.10 Aligned_cols=225 Identities=10% Similarity=0.069 Sum_probs=159.7
Q ss_pred cccceeccCCCeEEeeecCCeEEEEEC--CCccccccccccceeeecccCCEEEEEEcc----CCCEEEEEEC-CCcEEE
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPV--KKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGGE-DGTVRV 310 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~--~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~Lasgs~-Dg~V~i 310 (493)
+..++|+|+|++|++++.+++|++||+ .+.. ...++. +...+..++|+| ||++|++++. +++|.|
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v 252 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 252 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence 345889999999999999999999999 4322 223444 445689999999 9999999885 899999
Q ss_pred EecCCCeeeeeeeccCC-----------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeeccc
Q 011126 311 WKVIEHERLDGFDVQDT-----------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (493)
||..+++.+..+..... .+..+.+++.+. ...+....++.+.+|+.......
T Consensus 253 ~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~---------------~~~vs~~~~g~i~vvd~~~~~~l-- 315 (543)
T 1nir_A 253 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP---------------EFIVNVKETGKVLLVNYKDIDNL-- 315 (543)
T ss_dssp EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS---------------EEEEEETTTTEEEEEECTTSSSC--
T ss_pred EeccccccceeecccCcccCccccccCCceEEEEECCCCC---------------EEEEEECCCCeEEEEEecCCCcc--
Confidence 99999998887765321 112222222221 11223344556666655432211
Q ss_pred ceEEEecCCCCEeEEEEeCCC-eEE-EEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEe-CCC
Q 011126 380 PLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGS-IDG 451 (493)
Q Consensus 380 ~~~~~~~h~~~V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs-~Dg 451 (493)
.+..+ .+...+.+++|+|+| +|+ ++..+++|.+||+.+++++..+. |......+ ++|..+.+++++. .|+
T Consensus 316 ~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~ 393 (543)
T 1nir_A 316 TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG 393 (543)
T ss_dssp EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS
T ss_pred eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc
Confidence 01122 356678899999999 555 45568999999999999988875 54444333 5773377777776 589
Q ss_pred eEEEEeCCC-------CeEEE-ecCCCCCeEEEEEccCCCEEEEee
Q 011126 452 KVRIWEVRR-------CQVVD-YTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 452 ~V~IWdl~~-------~~~~~-~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
+|.|||+.+ .+++. +..+...+..|+++|||++|++++
T Consensus 394 ~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 394 SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred eEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 999999988 77774 666777888999999999999876
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.73 E-value=7.5e-16 Score=147.29 Aligned_cols=212 Identities=13% Similarity=0.094 Sum_probs=146.7
Q ss_pred eeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC-CeeeeeeeccC-CCC
Q 011126 252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDVQD-TDP 329 (493)
Q Consensus 252 sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~-~~~~~~~~~~~-~~~ 329 (493)
.++.++.|++|+....... .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+. ..+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~--------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~ 87 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR--------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICN 87 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE--------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred CCCcceeEEEEeCCCCcee--------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccc
Confidence 3567899999998754421 3456889999999999999999987 78999999998 76655444332 334
Q ss_pred ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE-EEeC
Q 011126 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSA 407 (493)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~-sgs~ 407 (493)
..+.|.+++... +....... ....+..++... .....+..+ ..+..++|+|++ +|+ ++..
T Consensus 88 ~~~~~spdg~~l-~~~~~~~~-----------~~~~l~~~~~~~-----~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 88 NDHGISPDGALY-AISDKVEF-----------GKSAIYLLPSTG-----GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp SCCEECTTSSEE-EEEECTTT-----------SSCEEEEEETTC-----CCCEECCSS-SSEEEEEECTTSSEEEEEEEE
T ss_pred cceEECCCCCEE-EEEEeCCC-----------CcceEEEEECCC-----CceEEeecC-CCccceEECCCCCEEEEEECC
Confidence 555665544321 11111110 122333332211 122333333 348899999999 555 7889
Q ss_pred CCeEEEEEC--CCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCC--CCeEEEecCCCCCeEEEEEccCC
Q 011126 408 DKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDG 482 (493)
Q Consensus 408 Dg~V~lWd~--~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~--~~~~~~~~~~~~~I~sv~~spdG 482 (493)
++.++||++ .++.......+...+.+++|+| ++++|+.++ .++.++||++. .+.+..+..+...+..++|+|+|
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG 228 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence 999999985 4455555455888999999999 999887766 58999999875 45566677778889999999999
Q ss_pred CEEEEeecC
Q 011126 483 KVRQNSACN 491 (493)
Q Consensus 483 ~~l~s~s~d 491 (493)
++|++++.+
T Consensus 229 ~~l~~~~~~ 237 (297)
T 2ojh_A 229 DKVVFVSYD 237 (297)
T ss_dssp SEEEEEEEE
T ss_pred CEEEEEEcC
Confidence 999888754
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.72 E-value=5.1e-16 Score=152.40 Aligned_cols=229 Identities=10% Similarity=0.095 Sum_probs=152.6
Q ss_pred cceeccCCCeEEeeec-CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC---cEEEEecCC
Q 011126 240 SATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIE 315 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~V~iWdl~~ 315 (493)
.++|+|+|+++++++. ++.|.+|+....... ...+..+..++.+++|+|+|++|+++..++ .|++||+.+
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCE------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence 6899999997666554 899999998765421 224555666666699999999999555553 899999999
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee-ecccceEEEecCCCCEeEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-LLEKPLHEFQGHSSEVLDL 394 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~l 394 (493)
++.+..+.... .+..+.+.+++.. ++........ .+.+|+...-. +.... .....+...+..+
T Consensus 118 ~~~~~~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~-------------~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 181 (331)
T 3u4y_A 118 NKFISTIPIPY-DAVGIAISPNGNG-LILIDRSSAN-------------TVRRFKIDADGVLFDTG-QEFISGGTRPFNI 181 (331)
T ss_dssp TEEEEEEECCT-TEEEEEECTTSSC-EEEEEETTTT-------------EEEEEEECTTCCEEEEE-EEEECSSSSEEEE
T ss_pred CCeEEEEECCC-CccceEECCCCCE-EEEEecCCCc-------------eEEEEEECCCCcEeecC-CccccCCCCccce
Confidence 98877766533 2345555554432 2222221111 02222221000 00000 1122344568999
Q ss_pred EEeCCC-eE-EEEeCCCeEEEEECCCCcE---EEEecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCCCeEE--E-
Q 011126 395 SWSKNG-FL-LSSSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV--D- 465 (493)
Q Consensus 395 ~~sp~g-~l-~sgs~Dg~V~lWd~~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~~~~~--~- 465 (493)
+|+|+| ++ +++..++.|++||+.+++. +..+.....+..++|+| ++++|+.+. .++.|.+||+.++++. .
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecc
Confidence 999999 44 5555789999999999988 77777778889999999 999766554 5788999999998872 1
Q ss_pred ecCC----C---CCeEEEEEccCCCEEEEeecC
Q 011126 466 YTDI----R---EIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 466 ~~~~----~---~~I~sv~~spdG~~l~s~s~d 491 (493)
+... . .....++|+|||++|++++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 293 (331)
T 3u4y_A 261 FGHGLLIDPRPLFGANQMALNKTETKLFISANI 293 (331)
T ss_dssp EECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred cccccccCCCCcccccceEECCCCCEEEEecCC
Confidence 1111 1 223568999999998877654
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.71 E-value=1e-15 Score=150.30 Aligned_cols=232 Identities=12% Similarity=0.151 Sum_probs=145.1
Q ss_pred cccccceeccCCCeEEeeecC-CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEEec
Q 011126 236 DRHGSATLKPGDHELTLGQRM-RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKV 313 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~d-g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iWdl 313 (493)
..+..++|+|+|++|++++.+ +.|++|++......+. ....+..+. .+..++|+|+|++|++++. ++.|++||+
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 455669999999998888876 9999999873221111 112333333 7889999999998877765 889999999
Q ss_pred CCC---eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc-eeecccceE--EEec-
Q 011126 314 IEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLLEKPLH--EFQG- 386 (493)
Q Consensus 314 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~--~~~~- 386 (493)
..+ +....+... ..+..+.+.+++.. ++. ....+..+.+|+... ..+. .+. .+..
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~-l~~--------------~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~ 175 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRT-LWV--------------PALKQDRICLFTVSDDGHLV--AQDPAEVTTV 175 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSE-EEE--------------EEGGGTEEEEEEECTTSCEE--EEEEEEEECS
T ss_pred CCCccccccccccCC-CCceEEEECCCCCE-EEE--------------ecCCCCEEEEEEecCCCcee--eecccccccC
Confidence 433 333333322 22334444443321 111 111234455554332 1110 011 2222
Q ss_pred CCCCEeEEEEeCCC-eEE-EEeCCCeEEEEECCC--CcE--EEEec-------CCCcEEEEEEccCCCCEEE-EEeCCCe
Q 011126 387 HSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGI--DRC--LRVFS-------HNNYVTSVAFNPVDDNYFI-SGSIDGK 452 (493)
Q Consensus 387 h~~~V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~--~~~--~~~~~-------h~~~V~~v~fsp~d~~~l~-sgs~Dg~ 452 (493)
....+..++|+|++ +|+ ++..++.|++|++.. +.. +..+. ....+..++|+| ++++|+ ++..++.
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASL 254 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTE
T ss_pred CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCE
Confidence 34578899999999 554 455899999999953 332 22222 134677899999 888776 4557999
Q ss_pred EEEEeCC--CC--eEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 453 VRIWEVR--RC--QVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 453 V~IWdl~--~~--~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
|++||+. ++ +.+........+..++|+|+|++|++++.
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred EEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecC
Confidence 9999998 33 34433333334889999999998888764
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.69 E-value=2.7e-16 Score=172.11 Aligned_cols=224 Identities=9% Similarity=0.031 Sum_probs=153.0
Q ss_pred ccccceeccCCCeEEeeec-CC-----eEEEEECCCccccccccccceeeeccc------------------------CC
Q 011126 237 RHGSATLKPGDHELTLGQR-MR-----RVRVHPVKKQSRELSSLYTGQEFLAHE------------------------GS 286 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~-dg-----~V~vwd~~~~~~~~~~~~~~~~l~~H~------------------------~~ 286 (493)
.+..++|+|||++|++++. ++ .|++|++.+..... .+..|. ..
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL-------LVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE-------EECGGGTC--------------------CCEE
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE-------ccchhhcccccccccchhhhhhhhhhhccccC
Confidence 4556899999999999988 88 99999987654221 122222 23
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (493)
Q Consensus 287 I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 364 (493)
|..++|+|||++|++++. +.|++||+.++. ....+..+...+..+.|++++...++. . +.
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~--~---------------~~ 172 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFI--R---------------GR 172 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEE--E---------------TT
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEE--e---------------CC
Confidence 789999999999999886 899999998873 333444444445556666554322111 1 12
Q ss_pred eEEEcCCCceeecccceEEEecCCC----------------CEeEEEEeCCC-eEEEEeCCC------------------
Q 011126 365 TCVVLPPKVFRLLEKPLHEFQGHSS----------------EVLDLSWSKNG-FLLSSSADK------------------ 409 (493)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~h~~----------------~V~~l~~sp~g-~l~sgs~Dg------------------ 409 (493)
.+.+|+...... ......+.. .+..++|+|+| +|++++.|+
T Consensus 173 ~i~~~d~~~g~~----~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~ 248 (741)
T 2ecf_A 173 NLWVIDLASGRQ----MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDV 248 (741)
T ss_dssp EEEEEETTTTEE----EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred cEEEEecCCCCE----EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccc
Confidence 455554432111 111111222 24789999999 888887665
Q ss_pred ---------------eEEEEECCC-CcEEEEe---cCCCcEEEEEEccCCCCEEEEEeC-----CCeEEEEeCCCCeEEE
Q 011126 410 ---------------TVRLWQVGI-DRCLRVF---SHNNYVTSVAFNPVDDNYFISGSI-----DGKVRIWEVRRCQVVD 465 (493)
Q Consensus 410 ---------------~V~lWd~~~-~~~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~-----Dg~V~IWdl~~~~~~~ 465 (493)
.|++||+.+ ++..... .|...+..++| | ++++|+.++. +..|++||+.+++...
T Consensus 249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRV 326 (741)
T ss_dssp EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred eEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence 899999988 8765554 37789999999 9 9999987764 5789999999987664
Q ss_pred ec-CCCC----CeEEEEEccCCCEEEEeecC
Q 011126 466 YT-DIRE----IVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 466 ~~-~~~~----~I~sv~~spdG~~l~s~s~d 491 (493)
.. .+.. .+..++|+|||+++++++.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 357 (741)
T 2ecf_A 327 LAHETSPTWVPLHNSLRFLDDGSILWSSERT 357 (741)
T ss_dssp EEEEECSSCCCCCSCCEECTTSCEEEEECTT
T ss_pred EEEcCCCCcCCcCCceEECCCCeEEEEecCC
Confidence 32 2222 45689999999977777654
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.69 E-value=5.7e-15 Score=145.81 Aligned_cols=227 Identities=11% Similarity=0.041 Sum_probs=159.0
Q ss_pred cccccceeccCCCeEEeeec-------CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCc
Q 011126 236 DRHGSATLKPGDHELTLGQR-------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGT 307 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~-------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~ 307 (493)
.....++|+|+++++++++. ++.|.+||....... ..+. +...+..++|+|+|++|+.+ ..++.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-------~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-------QAIH-NDLKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-------EEEE-ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-------EEEe-cCCCcceEEECCCCCEEEEEecCCCE
Confidence 34456899999998888763 678999998754421 1222 23457789999999966554 55799
Q ss_pred EEEEecCCCeeeeeeeccCCC---------CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 308 VRVWKVIEHERLDGFDVQDTD---------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
|.+||+.+++.+..+..+... +..+.+.+++.. ++.. ....+..+.+|+.....
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~-------------~~~~~~~i~~~d~~~~~--- 175 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT-VYIS-------------GIGKESVIWVVDGGNIK--- 175 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE-EEEE-------------EESSSCEEEEEETTTTE---
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE-EEEE-------------ecCCCceEEEEcCCCCc---
Confidence 999999999988777664322 233444433321 1111 11234556666654332
Q ss_pred cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeC-CC
Q 011126 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSI-DG 451 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~-Dg 451 (493)
.+..+..+...+..++|+|++ +|++++.++.|.+||+.+++.+..+. +...+..++|+| ++++|++++. ++
T Consensus 176 -~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~ 253 (353)
T 3vgz_A 176 -LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAA 253 (353)
T ss_dssp -EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSS
T ss_pred -eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCC
Confidence 244455456668899999999 88888999999999999999887775 355788999999 8887666654 59
Q ss_pred eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 452 KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 452 ~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.|.+||+.+++++.......+ ..++|+|||++++++..
T Consensus 254 ~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 254 EVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHR 291 (353)
T ss_dssp EEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEET
T ss_pred EEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEEC
Confidence 999999999988754333333 56999999997776653
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.68 E-value=4.8e-15 Score=156.70 Aligned_cols=219 Identities=12% Similarity=0.126 Sum_probs=154.0
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec--CCCee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV--IEHER 318 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl--~~~~~ 318 (493)
..++|++.++++++.+++|.+||...... .+++..+.. +..++|+|||++|++++.|++|++||+ .+++.
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~-------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKKI-------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCCE-------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCceE-------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence 35899999999999999999999875432 234552333 899999999999999999999999999 88888
Q ss_pred eeeeeccCCCCceEEEee----CCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec--------
Q 011126 319 LDGFDVQDTDPSCLYFTI----NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-------- 386 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-------- 386 (493)
+..+... ..+..+.+++ ++. .++.. ...+..+.+|+..... ++..+..
T Consensus 215 ~~~i~~g-~~p~~va~sp~~~~dg~-~l~v~--------------~~~~~~v~v~D~~t~~----~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 215 VAEIKIG-IEARSVESSKFKGYEDR-YTIAG--------------AYWPPQFAIMDGETLE----PKQIVSTRGMTVDTQ 274 (543)
T ss_dssp EEEEECC-SEEEEEEECCSTTCTTT-EEEEE--------------EEESSEEEEEETTTCC----EEEEEECCEECSSSC
T ss_pred EEEEecC-CCcceEEeCCCcCCCCC-EEEEE--------------EccCCeEEEEeccccc----cceeecccCcccCcc
Confidence 8777643 3345555554 321 12211 1123445555544322 2333332
Q ss_pred --CC-CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEE--EecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeC
Q 011126 387 --HS-SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEV 458 (493)
Q Consensus 387 --h~-~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~--~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl 458 (493)
|. ..+..+.++|++ ++++...+++|.+||+.+.+.+. .+.+...+..+.|+| ++++|++++ .+++|.+||+
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEET
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEEC
Confidence 22 378999999987 77888899999999998876554 556778888999999 999776554 5899999999
Q ss_pred CCCeEEEecC-----CCCCeEEEEEccC-CCEEEEee
Q 011126 459 RRCQVVDYTD-----IREIVSAVCYCPD-GKVRQNSA 489 (493)
Q Consensus 459 ~~~~~~~~~~-----~~~~I~sv~~spd-G~~l~s~s 489 (493)
.+++++.... |......+ ++|+ |..++++.
T Consensus 354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~ 389 (543)
T 1nir_A 354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH 389 (543)
T ss_dssp TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence 9999875322 44444443 5787 55555543
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.68 E-value=7.2e-15 Score=145.51 Aligned_cols=231 Identities=12% Similarity=0.089 Sum_probs=145.3
Q ss_pred cccccceeccCCCeEEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEE
Q 011126 236 DRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVW 311 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iW 311 (493)
.....++|+|+|+ |++++. ++.|++|++...... ....+..|...+..++|+|+|++|++++ .++.|++|
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH-----KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 4455699999999 555443 689999998543321 1223455777889999999999998888 68999999
Q ss_pred ecCC-Ce--eeeeeeccCC---------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC-ceeecc
Q 011126 312 KVIE-HE--RLDGFDVQDT---------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VFRLLE 378 (493)
Q Consensus 312 dl~~-~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~ 378 (493)
++.. +. .+..+..... .+..+.+.+++. ++... ..+..+.+|+.. ...+
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~--------------~~~~~v~~~~~~~~g~~-- 175 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVID--------------LGSDKVYVYNVSDAGQL-- 175 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEE--------------TTTTEEEEEEECTTSCE--
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEe--------------CCCCEEEEEEECCCCcE--
Confidence 9963 22 2222222111 122344444332 32222 223334444332 1111
Q ss_pred cceEEEec-CCCCEeEEEEeCCC-eEE-EEeCCCeEEEEECCC--CcE--EEEec-C------CCcEEEEEEccCCCCEE
Q 011126 379 KPLHEFQG-HSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGI--DRC--LRVFS-H------NNYVTSVAFNPVDDNYF 444 (493)
Q Consensus 379 ~~~~~~~~-h~~~V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~--~~~--~~~~~-h------~~~V~~v~fsp~d~~~l 444 (493)
..+..+.. ....+..++|+|+| +|+ ++..++.|++|++.. ++. +..+. . ...+..++|+| ++++|
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l 254 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFL 254 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEE
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEE
Confidence 11122222 23367889999999 454 456789999999874 443 22222 1 15689999999 99977
Q ss_pred -EEEeCCCeEEEEeCCC-C--eEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 445 -ISGSIDGKVRIWEVRR-C--QVV-DYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 445 -~sgs~Dg~V~IWdl~~-~--~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
++...++.|.+|++.. + +.+ ....+...+..++|+|||++|++++.+
T Consensus 255 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 255 YVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp EEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence 5666789999999972 2 333 344445678999999999999888754
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.68 E-value=1.5e-14 Score=141.87 Aligned_cols=222 Identities=11% Similarity=0.128 Sum_probs=146.6
Q ss_pred eeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEEecCCCee-
Q 011126 242 TLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHER- 318 (493)
Q Consensus 242 ~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iWdl~~~~~- 318 (493)
.|.+++. .++++..++.|++||....... ..+..+...+ .++|+|+|++|++++. ++.|++||+.+++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL-------NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEE-------EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccccee-------eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 4555555 4677888999999998755432 2234455566 9999999997777665 88999999998886
Q ss_pred eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC
Q 011126 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 398 (493)
...+.........+.+.+++...+ .... ......+.+|+...... +..+. +...+.+++|+|
T Consensus 76 ~~~~~~~~~~~~~~~~s~dg~~l~--~~~~-----------~~~~~~i~v~d~~~~~~----~~~~~-~~~~~~~~~~sp 137 (331)
T 3u4y_A 76 VVAIQEGQSSMADVDITPDDQFAV--TVTG-----------LNHPFNMQSYSFLKNKF----ISTIP-IPYDAVGIAISP 137 (331)
T ss_dssp EEEEEECSSCCCCEEECTTSSEEE--ECCC-----------SSSSCEEEEEETTTTEE----EEEEE-CCTTEEEEEECT
T ss_pred EEecccCCCCccceEECCCCCEEE--EecC-----------CCCcccEEEEECCCCCe----EEEEE-CCCCccceEECC
Confidence 555555444333355544432111 1100 00111566666543322 33333 344578999999
Q ss_pred CC-e-EEEEeCCCe-EEEEECCCCcEE-----EEecCCCcEEEEEEccCCCCEEE-EEeCCCeEEEEeCCCCeE---EEe
Q 011126 399 NG-F-LLSSSADKT-VRLWQVGIDRCL-----RVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRRCQV---VDY 466 (493)
Q Consensus 399 ~g-~-l~sgs~Dg~-V~lWd~~~~~~~-----~~~~h~~~V~~v~fsp~d~~~l~-sgs~Dg~V~IWdl~~~~~---~~~ 466 (493)
+| + +++...++. |.+|++.....+ ..+.....+..++|+| ++++++ ++..++.|++||+.+++. +..
T Consensus 138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence 99 4 455566688 999998754332 3334566789999999 898554 555689999999998876 654
Q ss_pred cCCCCCeEEEEEccCCCEEEEeec
Q 011126 467 TDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 467 ~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
......+..++|+|||+++++++.
T Consensus 217 ~~~~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 217 VGTNNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEEECS
T ss_pred ccCCCCCceEEECCCCCEEEEEEc
Confidence 445577889999999998776643
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.68 E-value=6.5e-16 Score=168.48 Aligned_cols=220 Identities=9% Similarity=0.037 Sum_probs=148.2
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC---CEEEEEEccCCCEEEEEECC---------
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGED--------- 305 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~D--------- 305 (493)
..+++|+|+|+++++ +.||+|++|+..+... .+.+.+|.. .|..++|+|||++|++++.+
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-------EEEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence 445899999998776 6899999999875542 123445554 49999999999999999875
Q ss_pred CcEEEEecCCCeeeeeeeccCC---CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126 306 GTVRVWKVIEHERLDGFDVQDT---DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
+.|++||+.+++. ..+..... .+..+.|++++....+.. ...+.+|+..... ...
T Consensus 91 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~-----------------~~~i~~~~~~~g~----~~~ 148 (723)
T 1xfd_A 91 GYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-----------------ENNIYYCAHVGKQ----AIR 148 (723)
T ss_dssp SEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-----------------TTEEEEESSSSSC----CEE
T ss_pred eeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEE-----------------CCeEEEEECCCCc----eEE
Confidence 7788999998875 22322211 234455555543222211 1245555543211 122
Q ss_pred EEecCCC------------------CEeEEEEeCCC-eEEEEeCCC----------------------------------
Q 011126 383 EFQGHSS------------------EVLDLSWSKNG-FLLSSSADK---------------------------------- 409 (493)
Q Consensus 383 ~~~~h~~------------------~V~~l~~sp~g-~l~sgs~Dg---------------------------------- 409 (493)
....+.. .+.+++|+|+| +|++++.|+
T Consensus 149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 228 (723)
T 1xfd_A 149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI 228 (723)
T ss_dssp EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence 2222222 23789999999 888777543
Q ss_pred eEEEEECCCCcEEEEec-C------CCcEEEEEEccCCCCEEEEEeC----CCeEEEEeCCCCeEEEec--CCCCCe---
Q 011126 410 TVRLWQVGIDRCLRVFS-H------NNYVTSVAFNPVDDNYFISGSI----DGKVRIWEVRRCQVVDYT--DIREIV--- 473 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~~~-h------~~~V~~v~fsp~d~~~l~sgs~----Dg~V~IWdl~~~~~~~~~--~~~~~I--- 473 (493)
+|++||+.++++...+. + ...+..++|+| |+++|++... +..|++||+.++++.... .+...+
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 307 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ 307 (723)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc
Confidence 79999999888655554 2 67899999999 9998877653 357999999998866432 223333
Q ss_pred -EEEEEccCCCEEEEe
Q 011126 474 -SAVCYCPDGKVRQNS 488 (493)
Q Consensus 474 -~sv~~spdG~~l~s~ 488 (493)
..++|+|||+.|+..
T Consensus 308 ~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 308 NEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCEECTTSCSEEEE
T ss_pred CCCceEcCCCCeEEEE
Confidence 378999999987765
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.67 E-value=8.7e-16 Score=163.54 Aligned_cols=223 Identities=10% Similarity=-0.002 Sum_probs=151.7
Q ss_pred ccccceeccCCCeEEeeec-CCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEEC---CCcEEEE
Q 011126 237 RHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGE---DGTVRVW 311 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~---Dg~V~iW 311 (493)
.+.+++|+|||++||.++. +|+++||++.... . +.+..|. ..|..+.|+|| +++++++. +...+||
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--T------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--E------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCC--c------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence 3566899999999999877 9999999974322 1 1234455 68999999999 77887775 5556776
Q ss_pred ecCC--CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 312 KVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 312 dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
.+.. ......+... .......+++++...++... ..+ ...+|+.. ......+..+..
T Consensus 94 ~~~~~~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~--------------~~~-~~~l~d~~-----~g~~~~l~~~~~ 152 (582)
T 3o4h_A 94 KVNTSRPGEEQRLEAV-KPMRILSGVDTGEAVVFTGA--------------TED-RVALYALD-----GGGLRELARLPG 152 (582)
T ss_dssp EEETTSTTCCEECTTS-CSBEEEEEEECSSCEEEEEE--------------CSS-CEEEEEEE-----TTEEEEEEEESS
T ss_pred EEeccCCCccccccCC-CCceeeeeCCCCCeEEEEec--------------CCC-CceEEEcc-----CCcEEEeecCCC
Confidence 6543 2211122211 12234455555543333221 111 11233221 222223333333
Q ss_pred CEeEEEEeCCC-eEEEEeCC----CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC--eEEEEeCCCCe
Q 011126 390 EVLDLSWSKNG-FLLSSSAD----KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQ 462 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~D----g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg--~V~IWdl~~~~ 462 (493)
.+++|+|+| +|++++.+ ..|++||+.+++......|...+..++|+| ||++|+++..++ .|++||+.+++
T Consensus 153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCC
T ss_pred --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCc
Confidence 789999999 88877776 789999999988776666889999999999 999999888898 99999999988
Q ss_pred EEEecCCCCCeEEEE--------EccCCCEEEEeecCC
Q 011126 463 VVDYTDIREIVSAVC--------YCPDGKVRQNSACNF 492 (493)
Q Consensus 463 ~~~~~~~~~~I~sv~--------~spdG~~l~s~s~d~ 492 (493)
...+..+...+..+. |+|||+++++++.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 230 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp EEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred EEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence 775566666666666 999997777776553
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.66 E-value=4.5e-15 Score=162.41 Aligned_cols=240 Identities=10% Similarity=0.078 Sum_probs=160.6
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
.+..++|+|||++|++++. +.|++|++...... ....+..|...+..++|+|||++|+.++ ++.|++||+.++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-----AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-----SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-----eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence 3566999999999999886 99999998765100 1123556888999999999999999987 468999999988
Q ss_pred eeeeeeeccCC----------------CCceEEEeeCCCCceeeeeccCccccc---------------eee-eecC--C
Q 011126 317 ERLDGFDVQDT----------------DPSCLYFTINHLSQLIPIDVDKEKIDK---------------TKS-LRKS--S 362 (493)
Q Consensus 317 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-~~~s--~ 362 (493)
+.......... ....+.|++++...++. ..+...... ... ..+. .
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~-~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYA-RIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEE-EEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEE-EEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 76544332221 13456676665433332 222111100 000 0001 1
Q ss_pred CceEEEcCCCc-eeecccceEEE--ecCCCCEeEEEEeCCC-eEEEEeC-----CCeEEEEECCCCcEEEEec-CC-C--
Q 011126 363 DLTCVVLPPKV-FRLLEKPLHEF--QGHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGIDRCLRVFS-HN-N-- 429 (493)
Q Consensus 363 ~~~~~~~~~~~-~~~~~~~~~~~--~~h~~~V~~l~~sp~g-~l~sgs~-----Dg~V~lWd~~~~~~~~~~~-h~-~-- 429 (493)
...+.+|+... ... .... ..|...+..++| |+| +|+.++. +..|++||+.++++...+. +. .
T Consensus 262 ~~~l~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 262 QVKLGVISPAEQAQT----QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV 336 (741)
T ss_dssp EEEEEEECSSTTCCC----EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred eeEEEEEECCCCCce----EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence 12455555443 221 1111 147788999999 999 6665543 5789999999998877775 22 2
Q ss_pred -cEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeEEEecCCCCCeEEE-EEccCCCEEEEeec
Q 011126 430 -YVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVSAV-CYCPDGKVRQNSAC 490 (493)
Q Consensus 430 -~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~~~~~~~~~~I~sv-~~spdG~~l~s~s~ 490 (493)
.+..++|+| +++++++++.||.++||.+. +++...+..+...|..+ .|+|||+.|+..+.
T Consensus 337 ~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 337 PLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp CCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred CcCCceEECC-CCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence 456899999 99999999999987777665 33455677777888887 59999998876554
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.66 E-value=1.5e-14 Score=141.79 Aligned_cols=217 Identities=12% Similarity=0.160 Sum_probs=138.8
Q ss_pred eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC-CcEEEEecC--CCee--eeeee
Q 011126 249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GTVRVWKVI--EHER--LDGFD 323 (493)
Q Consensus 249 ~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g~V~iWdl~--~~~~--~~~~~ 323 (493)
++++++.++.|++|++.... ... .. ....|...+.+++|+|+|++|++++.+ +.|++|++. +++. +..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~-~~~---~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG-ALT---LT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS-CEE---EE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCC-cEE---Ee-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence 44455789999999986321 111 11 123477789999999999999998887 999999997 4443 33343
Q ss_pred ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE
Q 011126 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL 402 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l 402 (493)
... .+..+.+.+++.. ++. ....++.+.+|+.... ...+.+..+.. ...+.+++|+|++ +|
T Consensus 82 ~~~-~~~~~~~s~dg~~-l~~--------------~~~~~~~i~~~d~~~~-~~~~~~~~~~~-~~~~~~~~~s~dg~~l 143 (343)
T 1ri6_A 82 LPG-SLTHISTDHQGQF-VFV--------------GSYNAGNVSVTRLEDG-LPVGVVDVVEG-LDGCHSANISPDNRTL 143 (343)
T ss_dssp CSS-CCSEEEECTTSSE-EEE--------------EETTTTEEEEEEEETT-EEEEEEEEECC-CTTBCCCEECTTSSEE
T ss_pred cCC-CCcEEEEcCCCCE-EEE--------------EecCCCeEEEEECCCC-ccccccccccC-CCCceEEEECCCCCEE
Confidence 333 4555555544321 111 2222444555544200 01122333333 3458899999999 67
Q ss_pred EEEe-CCCeEEEEECCC-CcEEEE----e--cCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCC--CeE--E-Eec-
Q 011126 403 LSSS-ADKTVRLWQVGI-DRCLRV----F--SHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRR--CQV--V-DYT- 467 (493)
Q Consensus 403 ~sgs-~Dg~V~lWd~~~-~~~~~~----~--~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~--~~~--~-~~~- 467 (493)
++++ .++.|++||+.+ ++.... + .....+.+++|+| ++++|+++ ..++.|++|++.. +++ . ...
T Consensus 144 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~ 222 (343)
T 1ri6_A 144 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM 222 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred EEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc
Confidence 7666 899999999987 654322 2 2456788999999 88876554 4889999999953 432 1 111
Q ss_pred --CC---CCCeEEEEEccCCCEEEEee
Q 011126 468 --DI---REIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 468 --~~---~~~I~sv~~spdG~~l~s~s 489 (493)
.. ...+..++|+|+|++|+++.
T Consensus 223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~ 249 (343)
T 1ri6_A 223 MPENFSDTRWAADIHITPDGRHLYACD 249 (343)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred cCccccccCCccceEECCCCCEEEEEe
Confidence 11 23577899999999887665
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.65 E-value=4.1e-15 Score=169.29 Aligned_cols=183 Identities=9% Similarity=0.089 Sum_probs=152.7
Q ss_pred ecccccceec-cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC-CEEEEEEccCCCEEEEEECCCcEE-EE
Q 011126 235 IDRHGSATLK-PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-SILTMKFSLDGQYLASGGEDGTVR-VW 311 (493)
Q Consensus 235 ~~~~~~~~fs-p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~-~I~~l~fspdg~~Lasgs~Dg~V~-iW 311 (493)
...+..++|+ |+|++|++++ ++.|.+|+...... ..+..|.. .+..+.|+ ||+.|+.++.++.|. +|
T Consensus 295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~ 364 (1045)
T 1k32_A 295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV--------LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIY 364 (1045)
T ss_dssp CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE--------EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEE
T ss_pred ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce--------EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEE
Confidence 3456779999 9999999987 78999999875431 12456777 89999999 999999999887788 88
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
++.+++. ..+.+|...+
T Consensus 365 d~~~~~~---------------------------------------------------------------~~l~~~~~~~ 381 (1045)
T 1k32_A 365 DYRTGKA---------------------------------------------------------------EKFEENLGNV 381 (1045)
T ss_dssp ETTTCCE---------------------------------------------------------------EECCCCCCSE
T ss_pred ECCCCCc---------------------------------------------------------------eEecCCccce
Confidence 8765431 1122567788
Q ss_pred eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCC----------eEEEEeCC
Q 011126 392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG----------KVRIWEVR 459 (493)
Q Consensus 392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg----------~V~IWdl~ 459 (493)
..++|+|+| +|++++.++.|++||+.+++....+ .|...+.+++|+| ++++|++++.++ .|++||+.
T Consensus 382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 999999999 9999999999999999999988887 5888999999999 999999887754 89999999
Q ss_pred CCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 460 RCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 460 ~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
++++..+..+...+..++|+|||++|+.++.+
T Consensus 461 ~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 461 GRKIFAATTENSHDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp TTEEEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred CCcEEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence 99977888888899999999999999887753
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.64 E-value=1.1e-14 Score=158.58 Aligned_cols=242 Identities=8% Similarity=0.065 Sum_probs=155.0
Q ss_pred cccceeccCCCeEEeeecC---------CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 238 HGSATLKPGDHELTLGQRM---------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~d---------g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
+.+++|+|||++|++++.+ +.|.+|++...... .+ ....+|...+..++|+|||++||.++. +.|
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~l---~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i 136 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ--SL---DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI 136 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE--EC---CCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE--ec---cCCccccccccccEECCCCCEEEEEEC-CeE
Confidence 5679999999999998764 78889998865421 11 112356666899999999999999886 789
Q ss_pred EEEecCCCeeeeeeeccCCCC------------------ceEEEeeCCCCceeeeeccCccccceee-------------
Q 011126 309 RVWKVIEHERLDGFDVQDTDP------------------SCLYFTINHLSQLIPIDVDKEKIDKTKS------------- 357 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 357 (493)
++||+.+++.......+.... ..+.|++++...++. ..+.........
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA-AINDSRVPIMELPTYTGSIYPTVKP 215 (723)
T ss_dssp EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE-EEECTTSCEEEECCCSSSSSCCCEE
T ss_pred EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE-EECCCccceEEeeccCCcCCCccee
Confidence 999999887655444322222 456666665433222 222111100000
Q ss_pred ee----c--CCCceEEEcCCCceeecccceEEEec------CCCCEeEEEEeCCC-eEEEEe----CCCeEEEEECCCCc
Q 011126 358 LR----K--SSDLTCVVLPPKVFRLLEKPLHEFQG------HSSEVLDLSWSKNG-FLLSSS----ADKTVRLWQVGIDR 420 (493)
Q Consensus 358 ~~----~--s~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~g-~l~sgs----~Dg~V~lWd~~~~~ 420 (493)
+. + .....+.+|+..... ....+.. |...+..++|+|+| +|++.. .+..|++||+.+++
T Consensus 216 ~~~~~~G~~~~~~~l~~~d~~~~~----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 216 YHYPKAGSENPSISLHVIGLNGPT----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp EECCBTTSCCCEEEEEEEESSSSC----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred ccCCCCCCCCCeeEEEEEECCCCc----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 00 0 112355566554322 1233333 36678999999999 665554 23679999999998
Q ss_pred EEEEec--CCCcEE----EEEEccCCCCEEEE--EeCCC------eEEEEe-CCCCe---EEEecCCCCCeEE-EEEccC
Q 011126 421 CLRVFS--HNNYVT----SVAFNPVDDNYFIS--GSIDG------KVRIWE-VRRCQ---VVDYTDIREIVSA-VCYCPD 481 (493)
Q Consensus 421 ~~~~~~--h~~~V~----~v~fsp~d~~~l~s--gs~Dg------~V~IWd-l~~~~---~~~~~~~~~~I~s-v~~spd 481 (493)
+...+. +...+. .++|+| +++.|+. +..++ .|++|| ..+++ ...+......+.. ++|+||
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd 370 (723)
T 1xfd_A 292 CTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK 370 (723)
T ss_dssp EEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT
T ss_pred ceEEEEeccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC
Confidence 877653 444443 789999 8886664 45677 677888 45555 4455544445554 699999
Q ss_pred CCEEEEeecC
Q 011126 482 GKVRQNSACN 491 (493)
Q Consensus 482 G~~l~s~s~d 491 (493)
|+.|+..+.+
T Consensus 371 g~~l~~~~~~ 380 (723)
T 1xfd_A 371 GNKIYFLSTE 380 (723)
T ss_dssp TTEEEEEESS
T ss_pred CCEEEEEEcC
Confidence 9999876653
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.63 E-value=1.1e-13 Score=137.72 Aligned_cols=235 Identities=12% Similarity=0.102 Sum_probs=144.7
Q ss_pred ecccccceeccCCCeEEeeecC----CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEE
Q 011126 235 IDRHGSATLKPGDHELTLGQRM----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVR 309 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~d----g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~ 309 (493)
......++|+|+|++|++++.+ +.|.+|++......+. ....+..+......+++ ++++|++++ .++.|.
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~---~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH---LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSIT 123 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE---EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE---EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEE
Confidence 3445568999999999998875 8999998865322221 11233445566778888 888887776 578999
Q ss_pred EEecCCCeeeeeee----ccCC----------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126 310 VWKVIEHERLDGFD----VQDT----------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (493)
Q Consensus 310 iWdl~~~~~~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (493)
+|++.....+..+. .... .+..+.+.+++.. ++. ....+..+.+|+.....
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~-l~~--------------~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY-LLA--------------DDLGTDQIHKFNINPNA 188 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-EEE--------------EETTTTEEEEEEECTTC
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-EEE--------------EeCCCCEEEEEEEcCCC
Confidence 99997554332221 1000 0122333332211 111 12223334444222110
Q ss_pred -------ecc--cceEEEecCCCCEeEEEEeCCC-eEEEEe-CCCeEEEEECCCCcEE--EEec----CCCcEEEEEEcc
Q 011126 376 -------LLE--KPLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCL--RVFS----HNNYVTSVAFNP 438 (493)
Q Consensus 376 -------~~~--~~~~~~~~h~~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~~~~--~~~~----h~~~V~~v~fsp 438 (493)
+.. ........+...+..++|+|+| +|++++ .++.|.+|++.++... ..+. +...+..++|+|
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp 268 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP 268 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence 000 0011122345567899999999 666666 6899999999876542 2222 345678999999
Q ss_pred CCCCEEEEEeCC--CeEEEEeCC--CCeE--EEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 439 VDDNYFISGSID--GKVRIWEVR--RCQV--VDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 439 ~d~~~l~sgs~D--g~V~IWdl~--~~~~--~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
++++|+++..+ +.|.+|++. ++++ +........+..++|+|||++|++++.
T Consensus 269 -dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 269 -DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp -TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred -CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC
Confidence 99988766654 899999996 4543 322222567889999999999988874
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.63 E-value=6e-14 Score=137.21 Aligned_cols=219 Identities=11% Similarity=0.138 Sum_probs=145.6
Q ss_pred CeEEeeecCCeEEEEECCCccccccccccceeee-cccC-CEEEEEEccCCCEEE-EEECCCcEEEEecCCCeeeeeeec
Q 011126 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEG-SILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~-~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
.++++++.++.|++||....... +.+. ++.. .+..++|+|+|++|+ ++..++.|.+||+.+++.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD-------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE-------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcEE-------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 47899999999999998754321 1222 2222 478899999998764 555678999999999988776664
Q ss_pred cC-----CCCceEEEeeCCCCceeeeeccCccccceeeeecC----CCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 325 QD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS----SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 325 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
.. ..+..+.+.+++.. ++...... . .... .+..+.+|+..... .+..+.. ...+.+++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~-~------~~~~~~~~~~~~i~v~d~~~~~----~~~~~~~-~~~~~~~~ 141 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKT-LAIYESPV-R------LELTHFEVQPTRVALYDAETLS----RRKAFEA-PRQITMLA 141 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSE-EEEEEEEE-E------ECSSCEEECCCEEEEEETTTTE----EEEEEEC-CSSCCCEE
T ss_pred CCcccccccccceEECCCCCE-EEEEeccc-c------cccccccccCceEEEEECCCCc----EEEEEeC-CCCcceeE
Confidence 32 13445555444322 11111000 0 0000 24556666654322 2333332 44577889
Q ss_pred EeCCC-eEEEEeCCCeEEEEECCCCcEEEEec------------------------------------------------
Q 011126 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------------------------------------------------ 426 (493)
Q Consensus 396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~------------------------------------------------ 426 (493)
|+|++ +|+++ ++.|.+||+.+++.+..+.
T Consensus 142 ~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (337)
T 1pby_B 142 WARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT 219 (337)
T ss_dssp ECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred ECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence 99998 66666 6889999998777665442
Q ss_pred -------------------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126 427 -------------------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 427 -------------------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s 487 (493)
+...+.+++|+| ++++|+++ ++.|++||+.+++.+........+.+++|+|||++|++
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEE
T ss_pred ceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEE
Confidence 112345699999 99998888 79999999999988765555567899999999998888
Q ss_pred eecC
Q 011126 488 SACN 491 (493)
Q Consensus 488 ~s~d 491 (493)
++.+
T Consensus 297 ~~~~ 300 (337)
T 1pby_B 297 GGAL 300 (337)
T ss_dssp ESBS
T ss_pred EcCC
Confidence 7544
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.63 E-value=3.9e-14 Score=154.08 Aligned_cols=230 Identities=14% Similarity=0.108 Sum_probs=149.5
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCC-----ccccccccccceeeecccC--------------CEEEEEEccCC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----QSRELSSLYTGQEFLAHEG--------------SILTMKFSLDG 296 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~-----~~~~~~~~~~~~~l~~H~~--------------~I~~l~fspdg 296 (493)
..+..++|+|+|++||++ .++.|++|++.. ..... ....+.. .+.++.|+|||
T Consensus 121 ~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~-------~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg 192 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIA-------VTIDGTETLVYGQAVHQREFGIEKGTFWSPKG 192 (706)
T ss_dssp TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEE-------SCSCCBTTEEESSCCGGGCTTCCCSEEECTTS
T ss_pred ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEE-------eccCCCCCeEcccchhhhhcCCCceEEECCCC
Confidence 446679999999999995 789999999875 33211 0111222 25889999999
Q ss_pred CEEEEEE---------------------------------CCCcEEEEecCCCeeeeeeec--cCCCCceEEEeeCCCCc
Q 011126 297 QYLASGG---------------------------------EDGTVRVWKVIEHERLDGFDV--QDTDPSCLYFTINHLSQ 341 (493)
Q Consensus 297 ~~Lasgs---------------------------------~Dg~V~iWdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 341 (493)
++|++++ .+..|++||+.+++....... +...+..+.|++++..
T Consensus 193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~- 271 (706)
T 2z3z_A 193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI- 271 (706)
T ss_dssp SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE-
T ss_pred CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE-
Confidence 9999987 446799999988875443322 1122334444444322
Q ss_pred eeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe--cCC---CCEeEEEEeC--CC-eEEEEeCCCeEEE
Q 011126 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ--GHS---SEVLDLSWSK--NG-FLLSSSADKTVRL 413 (493)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~h~---~~V~~l~~sp--~g-~l~sgs~Dg~V~l 413 (493)
++....+. ......+.+|+..... ....+. .+. ..+..++|+| +| +++++..|+.++|
T Consensus 272 l~~~~~~~----------~~~~~~v~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l 337 (706)
T 2z3z_A 272 LYVAEVNR----------AQNECKVNAYDAETGR----FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL 337 (706)
T ss_dssp EEEEEECT----------TSCEEEEEEEETTTCC----EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred EEEEEeCC----------CCCeeEEEEEECCCCc----eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence 11111111 1122345555544321 111111 122 2346789999 99 8888999999999
Q ss_pred EECC-CCcEEEEec-CCCcEEE-EEEccCCCCEEEEEeC-CC----eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEE
Q 011126 414 WQVG-IDRCLRVFS-HNNYVTS-VAFNPVDDNYFISGSI-DG----KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 414 Wd~~-~~~~~~~~~-h~~~V~~-v~fsp~d~~~l~sgs~-Dg----~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l 485 (493)
|++. .+..+..+. +...+.. ++|+| +++.|+.++. ++ .|+.||+.+++...+. +...+.+++|+|||+++
T Consensus 338 ~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l 415 (706)
T 2z3z_A 338 YLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAI 415 (706)
T ss_dssp EEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEE
T ss_pred EEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEE
Confidence 9886 566666665 6667776 89999 8887765554 44 7888888887754443 66779999999999998
Q ss_pred EEeec
Q 011126 486 QNSAC 490 (493)
Q Consensus 486 ~s~s~ 490 (493)
+.+..
T Consensus 416 ~~~~~ 420 (706)
T 2z3z_A 416 IDIFQ 420 (706)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 87654
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.63 E-value=5.5e-14 Score=138.32 Aligned_cols=234 Identities=9% Similarity=0.045 Sum_probs=151.4
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEE-EEECCCcEEEEecCCCee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~~ 318 (493)
+++++++.++++++.++.|++||..+... .+.+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTV-------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN 77 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEE-------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcE-------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE
Confidence 67889999999999999999999875432 11233222 2577899999998665 455789999999999988
Q ss_pred eeeeeccCC------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 319 LDGFDVQDT------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 319 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
...+..... .+..+.+.+++... +......... .. ........+.+|+...... .+.+..+. +...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l-~~~~~~~~~~-~~--~~~~~~~~i~~~d~~~~~~-~~~~~~~~-~~~~~~ 151 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEV-YATVNPTQRL-ND--HYVVKPPRLEVFSTADGLE-AKPVRTFP-MPRQVY 151 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEE-EEEEEEEEEC-SS--CEEECCCEEEEEEGGGGGG-BCCSEEEE-CCSSCC
T ss_pred EEEEEcccccccccccccceEECCCCCEE-EEEccccccc-cc--ccccCCCeEEEEECCCccc-cceeeecc-CCCccc
Confidence 777765332 14555555544322 1111100000 00 0001124566666543221 12233333 334688
Q ss_pred EEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCC-------------------------------------------
Q 011126 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN------------------------------------------- 429 (493)
Q Consensus 393 ~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~------------------------------------------- 429 (493)
+++|+|+|.++.++ +.|.+||+.+++.+..+....
T Consensus 152 ~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 229 (349)
T 1jmx_B 152 LMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 229 (349)
T ss_dssp CEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred ceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence 99999999444443 349999999888777664211
Q ss_pred --------------------------cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC
Q 011126 430 --------------------------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483 (493)
Q Consensus 430 --------------------------~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~ 483 (493)
.+..++|+|.++++++++ ++.|++||+.+++.+........+..++|+|||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD 307 (349)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSS
T ss_pred ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCC
Confidence 344566667567788877 8899999999999876554556688999999999
Q ss_pred EEEEeecC
Q 011126 484 VRQNSACN 491 (493)
Q Consensus 484 ~l~s~s~d 491 (493)
+|++++.+
T Consensus 308 ~l~~~~~~ 315 (349)
T 1jmx_B 308 KLYLGGTF 315 (349)
T ss_dssp CEEEESBS
T ss_pred EEEEecCC
Confidence 88886543
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.61 E-value=1e-13 Score=135.61 Aligned_cols=210 Identities=12% Similarity=0.091 Sum_probs=141.9
Q ss_pred ccccceeccCCCeEEeee------------cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126 237 RHGSATLKPGDHELTLGQ------------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs------------~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (493)
.+..++|+|+|++|+++. .++.|.+|+....... ..+.. ...+..++|+|+|++|+++
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~-~~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR-------KAFEA-PRQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE-------EEEEC-CSSCCCEEECTTSSCEEEE--
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE-------EEEeC-CCCcceeEECCCCCEEEEe--
Confidence 455689999999998886 5799999998754321 12222 3457889999999988887
Q ss_pred CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecC----------CCceEEEcCCCce
Q 011126 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS----------SDLTCVVLPPKVF 374 (493)
Q Consensus 305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----------~~~~~~~~~~~~~ 374 (493)
++.|++||+.+++....+....... ...+.+++.. ++...... ........... ....+.+++....
T Consensus 153 ~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~-l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLA-VWNQHESS-GVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp SSSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCC-CCCCCTTT-TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred CCeEEEEECCCCcEeeeeeccccCC-CceeCCCccE-EeeeccCC-CceeeeeeccccccccccccccccceEEEeCCCC
Confidence 6889999999998876665443111 1123333221 11111000 00000000000 0013455555443
Q ss_pred eecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV 453 (493)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (493)
... ...+..+...+.+++|+|++ +++++ ++.|.+||+.+++.+..+.....+.+++|+| ++++|++++.++.|
T Consensus 230 ~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i 303 (337)
T 1pby_B 230 EMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDL 303 (337)
T ss_dssp CEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECT-TSCEEEEESBSSEE
T ss_pred Cce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECC-CCCEEEEEcCCCcE
Confidence 322 23345567788999999999 77766 7999999999999988888777889999999 99999999999999
Q ss_pred EEEeCCCCeEEE
Q 011126 454 RIWEVRRCQVVD 465 (493)
Q Consensus 454 ~IWdl~~~~~~~ 465 (493)
++||+.+++.+.
T Consensus 304 ~v~d~~~~~~~~ 315 (337)
T 1pby_B 304 AAYDAETLEKKG 315 (337)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECcCCcEEE
Confidence 999999988774
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.59 E-value=2.9e-14 Score=162.27 Aligned_cols=226 Identities=4% Similarity=0.037 Sum_probs=162.4
Q ss_pred eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+..|...+.++.|+++ .+++++..++.++||.+....... +.+..|. .+..++|+|||++|+.+ .++.|++
T Consensus 199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~------~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~ 269 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL------RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYI 269 (1045)
T ss_dssp EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC------EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEE
T ss_pred CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc------eEecCCC-CcceeeEcCCCCEEEEE-eCCEEEE
Confidence 3556667777899988 677778888999999865322211 2334454 46677999999999887 4899999
Q ss_pred EecCCCeeeeeeeccC-----------CCCceEEEe-eCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 311 WKVIEHERLDGFDVQD-----------TDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
|++.... +..+.... ..+..+.|+ +++...++.. ...+.+++...
T Consensus 270 ~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-----------------~~~i~~~~~~~----- 326 (1045)
T 1k32_A 270 FNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-----------------RGQAFIQDVSG----- 326 (1045)
T ss_dssp ECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-----------------TTEEEEECTTS-----
T ss_pred ecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-----------------cCEEEEEcCCC-----
Confidence 9994433 33333211 123444444 4332211110 33455555432
Q ss_pred cceEEEecCCC-CEeEEEEeCCC-eEEEEeCCCeEE-EEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126 379 KPLHEFQGHSS-EVLDLSWSKNG-FLLSSSADKTVR-LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (493)
Q Consensus 379 ~~~~~~~~h~~-~V~~l~~sp~g-~l~sgs~Dg~V~-lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I 455 (493)
.....+..|.. .+..++|+ +| .|+.++.+..|. +||+.++.......|...+..++|+| ++++|++++.++.|++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~ 404 (1045)
T 1k32_A 327 TYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMT 404 (1045)
T ss_dssp SBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred CceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECC-CCCEEEEECCCCeEEE
Confidence 22334566777 89999999 88 888888888898 99998877665556778999999999 9999999999999999
Q ss_pred EeCCCCeEEEec-CCCCCeEEEEEccCCCEEEEeec
Q 011126 456 WEVRRCQVVDYT-DIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 456 Wdl~~~~~~~~~-~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
||+.++++.... .|...+.+++|+|||++|++++.
T Consensus 405 ~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~ 440 (1045)
T 1k32_A 405 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP 440 (1045)
T ss_dssp EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred EECCCCceEEeccCCCCCccceEECCCCCeEEEEec
Confidence 999999887654 78888999999999999988765
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.59 E-value=5.3e-14 Score=153.04 Aligned_cols=241 Identities=11% Similarity=0.087 Sum_probs=157.5
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC-
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE- 315 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~- 315 (493)
.+.+++|+|+ ..++.+ .++.|++||+..... ..+..|...+..++|+|||++|+++ .|+.|++|++.+
T Consensus 83 ~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~ 151 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV--------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKL 151 (706)
T ss_dssp CCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE--------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCT
T ss_pred CceeEEECCC-CeEEEE-ECCEEEEEECCCCce--------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcc
Confidence 4566899999 655555 459999999875432 1244567788999999999999985 689999999988
Q ss_pred ----CeeeeeeeccCCC--------------CceEEEeeCCCCceeeeeccCccccceeee------------------e
Q 011126 316 ----HERLDGFDVQDTD--------------PSCLYFTINHLSQLIPIDVDKEKIDKTKSL------------------R 359 (493)
Q Consensus 316 ----~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~ 359 (493)
++........... ...+.|++++...++. ..+.......... .
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~-~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY-RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE-EEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE-EECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 7655433322221 3566676665433322 2111111111000 0
Q ss_pred cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCC-----eEEEEECCCCc-EEEEec--CCC-
Q 011126 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK-----TVRLWQVGIDR-CLRVFS--HNN- 429 (493)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg-----~V~lWd~~~~~-~~~~~~--h~~- 429 (493)
...+..+.+|+....... .+.....|...+..++|+|+| +|++++.++ .|++||+.+++ ...... +..
T Consensus 231 ~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 308 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGKTV--YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY 308 (706)
T ss_dssp CCCEEEEEEEETTTTEEE--ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC
T ss_pred CCCeeEEEEEECCCCceE--eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe
Confidence 113355666665432211 111112467789999999999 788877775 99999999984 333332 322
Q ss_pred --cEEEEEEcc-CCCCEEEEEeCCCeEEEEeCC-CCe-EEEecCCCCCeEE-EEEccCCCEEEEeecC
Q 011126 430 --YVTSVAFNP-VDDNYFISGSIDGKVRIWEVR-RCQ-VVDYTDIREIVSA-VCYCPDGKVRQNSACN 491 (493)
Q Consensus 430 --~V~~v~fsp-~d~~~l~sgs~Dg~V~IWdl~-~~~-~~~~~~~~~~I~s-v~~spdG~~l~s~s~d 491 (493)
.+..++|+| .++++|++++.||.++||.+. +++ +..+..+...+.. ++|+|||+.|+.++.+
T Consensus 309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 346789998 256799999999999999875 444 4456677777877 7999999988777654
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=159.01 Aligned_cols=221 Identities=11% Similarity=0.087 Sum_probs=144.8
Q ss_pred cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC---CEEEEEEccCCCEEEEEEC---------CCc
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGE---------DGT 307 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~---------Dg~ 307 (493)
.++|+|+|.+++++ .++.|++|+....... +.+.+|.. .|.+++|||||++|++++. ++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-------TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-------EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-------EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 47899999766655 6999999998765422 12333433 4899999999999998876 789
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec-----ccceE
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-----EKPLH 382 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-----~~~~~ 382 (493)
|++||+.+++.+..... ......+.|++++....+. .+..+.+|+....... .....
T Consensus 92 i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~-----------------~~~~i~~~~~~~g~~~~l~~~~~~~~ 153 (719)
T 1z68_A 92 YYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYV-----------------YQNNIYLKQRPGDPPFQITFNGRENK 153 (719)
T ss_dssp EEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEE-----------------ETTEEEEESSTTSCCEECCCCCBTTT
T ss_pred EEEEECCCCccccceec-CcccccceECCCCCEEEEE-----------------ECCeEEEEeCCCCCcEEEecCCCcCC
Confidence 99999999876311111 1234556666665432221 1234555554322110 00011
Q ss_pred EEecCCCCE---------eEEEEeCCC-eEEEEeCCC----------------------------------eEEEEECCC
Q 011126 383 EFQGHSSEV---------LDLSWSKNG-FLLSSSADK----------------------------------TVRLWQVGI 418 (493)
Q Consensus 383 ~~~~h~~~V---------~~l~~sp~g-~l~sgs~Dg----------------------------------~V~lWd~~~ 418 (493)
.+.||...| ..++|+|+| +|++++.|. +|++||+.+
T Consensus 154 v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~ 233 (719)
T 1z68_A 154 IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY 233 (719)
T ss_dssp EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred eEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence 122332222 589999999 888877552 789999998
Q ss_pred CcEE---EE-----e-cCCCcEEEEEEccCCCCEEEEEeCC----CeEEEEe----CCCCeEEEec-----CCCCCeE--
Q 011126 419 DRCL---RV-----F-SHNNYVTSVAFNPVDDNYFISGSID----GKVRIWE----VRRCQVVDYT-----DIREIVS-- 474 (493)
Q Consensus 419 ~~~~---~~-----~-~h~~~V~~v~fsp~d~~~l~sgs~D----g~V~IWd----l~~~~~~~~~-----~~~~~I~-- 474 (493)
++.. .. + .|...+..++|+| |++++++.... ..|++|| +.+++..... .+...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 312 (719)
T 1z68_A 234 PAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGF 312 (719)
T ss_dssp HHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSS
T ss_pred CCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccc
Confidence 8753 21 1 3778899999999 88777775432 3589999 8887766433 4555565
Q ss_pred ---EEEEccCCCEEEE
Q 011126 475 ---AVCYCPDGKVRQN 487 (493)
Q Consensus 475 ---sv~~spdG~~l~s 487 (493)
.+.|+|||+.++.
T Consensus 313 ~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 313 FVSTPVFSYDAISYYK 328 (719)
T ss_dssp SCCCCEECTTSSCEEE
T ss_pred cCCccEECCCCCeEEE
Confidence 7899999997655
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.55 E-value=8.5e-13 Score=130.48 Aligned_cols=210 Identities=10% Similarity=0.134 Sum_probs=128.3
Q ss_pred eecccccceeccCCCeEEeee-cCCeEEEEECCCccccccccccceeeec---------ccCCEEEEEEccCCCEEEEEE
Q 011126 234 IIDRHGSATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLA---------HEGSILTMKFSLDGQYLASGG 303 (493)
Q Consensus 234 ~~~~~~~~~fsp~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~~---------H~~~I~~l~fspdg~~Lasgs 303 (493)
+...+..++|+|+|++|++++ .++.|.+|++..... +.. ...+.. +...+.+++|+|+|+++++..
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~-~~~---~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA-LTL---TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC-EEE---EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC-eee---cceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 345566799999999888877 789999999863211 111 111111 233589999999999666666
Q ss_pred CCCcEEEEecC-CCeeeee--eeccC-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc--eeec
Q 011126 304 EDGTVRVWKVI-EHERLDG--FDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV--FRLL 377 (493)
Q Consensus 304 ~Dg~V~iWdl~-~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~ 377 (493)
.++.|++|++. +++.... +.... ..+..+.+.+++.. ++.. ...+..+.+|+... ..+
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~-l~v~--------------~~~~~~v~v~~~~~~~g~~- 223 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY-AFLA--------------GELSSQIASLKYDTQTGAF- 223 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE-EEEE--------------ETTTTEEEEEEEETTTTEE-
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE-EEEE--------------eCCCCEEEEEEecCCCCce-
Confidence 78899999998 4443221 12211 12333444443311 2211 12222333332211 110
Q ss_pred ccceEEEecCC------CCEeEEEEeCCC-eE-EEEeCCCeEEEEECCCC---cEEEEec-CCCcEEEEEEccCCCCEEE
Q 011126 378 EKPLHEFQGHS------SEVLDLSWSKNG-FL-LSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 378 ~~~~~~~~~h~------~~V~~l~~sp~g-~l-~sgs~Dg~V~lWd~~~~---~~~~~~~-h~~~V~~v~fsp~d~~~l~ 445 (493)
..+..+.... ..+..++|+|+| +| ++...++.|.+|++... ..+..+. +...+..++|+| ++++|+
T Consensus 224 -~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~ 301 (347)
T 3hfq_A 224 -TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVV 301 (347)
T ss_dssp -EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEE
T ss_pred -EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEE
Confidence 1122222222 458899999999 55 66677999999999733 3444443 566789999999 999888
Q ss_pred EEeCC-CeEEEE--eCCCCeEEE
Q 011126 446 SGSID-GKVRIW--EVRRCQVVD 465 (493)
Q Consensus 446 sgs~D-g~V~IW--dl~~~~~~~ 465 (493)
+++.+ +.|.+| |..++++..
T Consensus 302 v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 302 VVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEcCCCcEEEEEEeCCCCeEEe
Confidence 87765 899999 556777663
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.53 E-value=2.2e-13 Score=136.34 Aligned_cols=230 Identities=10% Similarity=0.028 Sum_probs=141.5
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECC-CccccccccccceeeecccCCEEEEEEccCCCE--EEEEE----------
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVK-KQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY--LASGG---------- 303 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~-~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~--Lasgs---------- 303 (493)
.+..++|+|+|++|++++.+ .|.+|++. ... +... .....+ +.+..++|+|+|++ ++++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~--~~~~---~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE--IVHE---ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE--EEEE---EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCC--EEEe---eEeecC-CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence 34568999999999998887 99999985 322 1110 011111 23556899999994 55553
Q ss_pred ---CCCcEEEEecC-CCeeeeeeec----cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC-ce
Q 011126 304 ---EDGTVRVWKVI-EHERLDGFDV----QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VF 374 (493)
Q Consensus 304 ---~Dg~V~iWdl~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~ 374 (493)
.++.+.+|++. +++....+.. ....+..+.+.+++.. ++..+ ..+..+.+|+.. ..
T Consensus 114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~--------------~~~~~v~~~~~~~~g 178 (365)
T 1jof_A 114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LYSAD--------------LTANKLWTHRKLASG 178 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EEEEE--------------TTTTEEEEEEECTTS
T ss_pred eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-EEEEc--------------CCCCEEEEEEECCCC
Confidence 68999999997 4554433332 2223444444444321 22111 112334444432 11
Q ss_pred eecccceEEEe--cCCCCEeEEEEeCCC-eEEEEe-CCCeEEEEECC--CCcEEE---Eec--------CCC------cE
Q 011126 375 RLLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVG--IDRCLR---VFS--------HNN------YV 431 (493)
Q Consensus 375 ~~~~~~~~~~~--~h~~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~--~~~~~~---~~~--------h~~------~V 431 (493)
.+ ..+..+. .|...+..++|+|+| +|++++ .+++|.+|++. +++... .+. |.. .+
T Consensus 179 ~~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 256 (365)
T 1jof_A 179 EV--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR 256 (365)
T ss_dssp CE--EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred CE--EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence 11 1122233 245679999999999 776666 47899999875 455421 221 121 58
Q ss_pred EEEE-EccCCCCEEEEEeCC-C-----eEEEEeCC-CCeEEE----ecCCCCCeEEEEEcc---CCCEEEEeecC
Q 011126 432 TSVA-FNPVDDNYFISGSID-G-----KVRIWEVR-RCQVVD----YTDIREIVSAVCYCP---DGKVRQNSACN 491 (493)
Q Consensus 432 ~~v~-fsp~d~~~l~sgs~D-g-----~V~IWdl~-~~~~~~----~~~~~~~I~sv~~sp---dG~~l~s~s~d 491 (493)
..++ |+| ++++|+++..+ . +|.+|++. ++++.. ...+...+..++|+| ||++|++++.+
T Consensus 257 ~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 257 ADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp EEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred ccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 8999 999 99988776643 2 89999996 666543 223445567899999 89999988753
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.53 E-value=1.2e-13 Score=138.58 Aligned_cols=235 Identities=10% Similarity=-0.017 Sum_probs=142.6
Q ss_pred ceeccCCCeEEeeec-CCe--EEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 241 ATLKPGDHELTLGQR-MRR--VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 241 ~~fsp~g~~lasgs~-dg~--V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
.+|+|||++|+.++. ++. |.+|+....... +...+|...+..+.|+|||++|+.++.++.|++||+.+++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-------~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-------QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-------ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-------EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 789999999998887 674 777787654321 1223455555567899999999999999999999999988
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceee-eeccCcccc---c----eeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIP-IDVDKEKID---K----TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
....+..+........+........+. ......... . ...........+.+++.... ....+..+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-----~~~~l~~~~~ 188 (388)
T 3pe7_A 114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-----ESTVILQENQ 188 (388)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-----CEEEEEEESS
T ss_pred ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-----ceEEeecCCc
Confidence 766555443322222232222222221 111100000 0 00111233455666655432 2344555677
Q ss_pred CEeEEEEeC-CC-eEEEEeCC------CeEEEEECCCCcEEEEecCC--CcEEEEEEccCCCCEEEEEeC-CC----eEE
Q 011126 390 EVLDLSWSK-NG-FLLSSSAD------KTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSI-DG----KVR 454 (493)
Q Consensus 390 ~V~~l~~sp-~g-~l~sgs~D------g~V~lWd~~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~-Dg----~V~ 454 (493)
.+..++|+| +| .|+....+ ..|.++|+..+.......+. ..+..+.|+| +++.|+..+. ++ .|+
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~ 267 (388)
T 3pe7_A 189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIY 267 (388)
T ss_dssp CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEE
T ss_pred cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEE
Confidence 899999999 88 67666553 37888888766554444444 3688899999 8987765443 22 399
Q ss_pred EEeCCCCeEEEecCCCCC------eEEEEEccCCCEEEEe
Q 011126 455 IWEVRRCQVVDYTDIREI------VSAVCYCPDGKVRQNS 488 (493)
Q Consensus 455 IWdl~~~~~~~~~~~~~~------I~sv~~spdG~~l~s~ 488 (493)
+||+.+++...+...... ...+.|+|||+.|+..
T Consensus 268 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 268 SADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp EECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred EEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 999999875432221110 1123799999988754
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.52 E-value=2.3e-12 Score=128.18 Aligned_cols=225 Identities=14% Similarity=0.131 Sum_probs=135.5
Q ss_pred ccCCCeEEeee----cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC----CcEEEEecCC
Q 011126 244 KPGDHELTLGQ----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWKVIE 315 (493)
Q Consensus 244 sp~g~~lasgs----~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~V~iWdl~~ 315 (493)
.+...++++|+ .++.|.+|.+......+..+ ..+ |...+..++|+|+|++|++++.+ +.|.+|++..
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~---~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPL---SDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEE---EEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEe---ecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 33444555653 46789999875433322211 122 66778889999999999999886 7999999865
Q ss_pred --Ceeee--eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE--Ee----
Q 011126 316 --HERLD--GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE--FQ---- 385 (493)
Q Consensus 316 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~---- 385 (493)
++... ........+..+. . ....++... ..++.+.+|+............. ..
T Consensus 85 ~~g~~~~~~~~~~~~~~p~~~~--~-dg~~l~~~~--------------~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~ 147 (361)
T 3scy_A 85 EKGTLHLLNTQKTMGADPCYLT--T-NGKNIVTAN--------------YSGGSITVFPIGQDGALLPASDVIEFKGSGP 147 (361)
T ss_dssp TTTEEEEEEEEECSSSCEEEEE--E-CSSEEEEEE--------------TTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred CCCcEEEeeEeccCCCCcEEEE--E-CCCEEEEEE--------------CCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence 43322 2222222222222 2 222222221 22334444433211110111111 11
Q ss_pred ----cCCCCEeEEEEeCCC-eEEE-EeCCCeEEEEECCCCcE--------------EEEecCCCcEEEEEEccCCCCEEE
Q 011126 386 ----GHSSEVLDLSWSKNG-FLLS-SSADKTVRLWQVGIDRC--------------LRVFSHNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 386 ----~h~~~V~~l~~sp~g-~l~s-gs~Dg~V~lWd~~~~~~--------------~~~~~h~~~V~~v~fsp~d~~~l~ 445 (493)
.+...+.+++|+|+| +|+. ...++.|++|++..... .....+...+..++|+| ++++|+
T Consensus 148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~ 226 (361)
T 3scy_A 148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAY 226 (361)
T ss_dssp CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEE
T ss_pred CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEE
Confidence 123346889999999 5554 44589999999875431 22233566788999999 999887
Q ss_pred EEe-CCCeEEEEeCCCCeEEE---e---cCCCCCeEEEEEccCCCEEEEeecC
Q 011126 446 SGS-IDGKVRIWEVRRCQVVD---Y---TDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 446 sgs-~Dg~V~IWdl~~~~~~~---~---~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+++ .++.|++|++.++++.. . ..+...+..++|+|||++|+++..+
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 777 68999999999876532 1 2333457899999999999776543
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.51 E-value=3.1e-13 Score=148.24 Aligned_cols=176 Identities=10% Similarity=0.086 Sum_probs=129.1
Q ss_pred ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC-----CEEEEEEccCCCEEEEEECC--------
Q 011126 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-----SILTMKFSLDGQYLASGGED-------- 305 (493)
Q Consensus 239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~-----~I~~l~fspdg~~Lasgs~D-------- 305 (493)
..++|+|+|.+++++ |+.|++|++.+.... +.+.+|.. ....+.|||||++|+.++.+
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceE-------EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 358999999999887 999999999866532 12344442 33458899999999998876
Q ss_pred -CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 306 -GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 306 -g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
+.+.+||+.+++.. .+
T Consensus 91 ~~~~~~~d~~~~~~~---------------------------------------------------------------~l 107 (740)
T 4a5s_A 91 TASYDIYDLNKRQLI---------------------------------------------------------------TE 107 (740)
T ss_dssp EEEEEEEETTTTEEC---------------------------------------------------------------CS
T ss_pred ceEEEEEECCCCcEE---------------------------------------------------------------Ec
Confidence 45668988776531 12
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcE-----------------EEEEEccCCCCEE
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV-----------------TSVAFNPVDDNYF 444 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V-----------------~~v~fsp~d~~~l 444 (493)
..|...+...+|||+| .|+.+ .++.|++|++.++...+... +...+ ..+.|+| ||++|
T Consensus 108 ~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~l 185 (740)
T 4a5s_A 108 ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFL 185 (740)
T ss_dssp SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEE
T ss_pred ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEE
Confidence 3356678999999999 77776 47899999998887654322 22222 3489999 99999
Q ss_pred EEEeCCC------------------------------------eEEEEeCCC---C---eEEEec------CCCCCeEEE
Q 011126 445 ISGSIDG------------------------------------KVRIWEVRR---C---QVVDYT------DIREIVSAV 476 (493)
Q Consensus 445 ~sgs~Dg------------------------------------~V~IWdl~~---~---~~~~~~------~~~~~I~sv 476 (493)
|.++.|. +|+|||+.+ + +...+. ++...+..+
T Consensus 186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 265 (740)
T 4a5s_A 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV 265 (740)
T ss_dssp EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence 9886432 588999998 7 555543 367789999
Q ss_pred EEccCCCEEEEe
Q 011126 477 CYCPDGKVRQNS 488 (493)
Q Consensus 477 ~~spdG~~l~s~ 488 (493)
+|+|||+.++..
T Consensus 266 ~wspdg~~~~~~ 277 (740)
T 4a5s_A 266 TWATQERISLQW 277 (740)
T ss_dssp EEEETTEEEEEE
T ss_pred EEeCCCeEEEEE
Confidence 999999976654
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.50 E-value=1.1e-12 Score=139.60 Aligned_cols=218 Identities=10% Similarity=-0.008 Sum_probs=145.4
Q ss_pred ccccceeccCCCeEEeeec---CCeEEEEECCC--ccccccccccceeeecccCCEEEEEEccCCC--EEEEEECCCcEE
Q 011126 237 RHGSATLKPGDHELTLGQR---MRRVRVHPVKK--QSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVR 309 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~--~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~V~ 309 (493)
.+..++|+|+ ++++++.. +...+||.+.. ..... .+..+ ..+...+|+|+|+ +++++..+ .+.
T Consensus 66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-------~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~ 135 (582)
T 3o4h_A 66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-------RLEAV-KPMRILSGVDTGEAVVFTGATED-RVA 135 (582)
T ss_dssp EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-------ECTTS-CSBEEEEEEECSSCEEEEEECSS-CEE
T ss_pred ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-------cccCC-CCceeeeeCCCCCeEEEEecCCC-Cce
Confidence 4556889999 77776664 45566655432 21111 11111 2234668888886 34444444 556
Q ss_pred EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+||+.+++.......+. ....+++++...+.... .......+.+|+... .....+..|..
T Consensus 136 l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~------------~~~~~~~i~~~d~~~-----g~~~~l~~~~~ 195 (582)
T 3o4h_A 136 LYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGF------------FGGGRVSLFTSNLSS-----GGLRVFDSGEG 195 (582)
T ss_dssp EEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEE------------EETTEEEEEEEETTT-----CCCEEECCSSC
T ss_pred EEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEE------------cCCCCeEEEEEcCCC-----CCceEeecCCC
Confidence 99999887655444332 55666665533221111 111113455554432 23456778889
Q ss_pred CEeEEEEeCCC-eEEEEeCCC--eEEEEECCCCcEEEEec-CCCcEEEEE--------EccCCCCEEEEEeCCCeEEEEe
Q 011126 390 EVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFS-HNNYVTSVA--------FNPVDDNYFISGSIDGKVRIWE 457 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg--~V~lWd~~~~~~~~~~~-h~~~V~~v~--------fsp~d~~~l~sgs~Dg~V~IWd 457 (493)
.+..++|+|+| .|+++..++ .|++||+.+++.. .+. |...+..+. |+| ++.++++++.||+++||+
T Consensus 196 ~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 196 SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEE
T ss_pred ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEE
Confidence 99999999999 888888888 8999999998887 443 666677677 999 889999999999999999
Q ss_pred CCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 458 VRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 458 l~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+ ++... .....|.+++|+ ||+++++++.+
T Consensus 274 ~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 274 D--GERVE--APQGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp T--TEEEC--CCSSEEEEEEEE-TTEEEEEEEET
T ss_pred E--CCeec--cCCCceEEEEec-CCEEEEEEcCC
Confidence 9 76654 334678999999 99998887765
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.50 E-value=2.8e-12 Score=128.30 Aligned_cols=232 Identities=10% Similarity=0.078 Sum_probs=143.4
Q ss_pred cceeccCCCeEEeee----------cCCeEEEEECCCccccccccccceeeec------ccCCEEEEEEccCCCEEEEEE
Q 011126 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLA------HEGSILTMKFSLDGQYLASGG 303 (493)
Q Consensus 240 ~~~fsp~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~~~~l~~------H~~~I~~l~fspdg~~Lasgs 303 (493)
.++|+|+|++++++. .++.|.+||..+.+. .+++.. +......++|+|||++|+++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-------~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n 126 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-------EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN 126 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-------EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-------EEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence 589999999998876 367899999864332 112221 234566799999999999887
Q ss_pred C--CCcEEEEecCCCeeeee-eeccCC------C-CceEEEeeCCCCceeeeeccC-ccccce-----------------
Q 011126 304 E--DGTVRVWKVIEHERLDG-FDVQDT------D-PSCLYFTINHLSQLIPIDVDK-EKIDKT----------------- 355 (493)
Q Consensus 304 ~--Dg~V~iWdl~~~~~~~~-~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------- 355 (493)
. +++|.+||+.+++.+.. +..... + .....+.......+..+.... .+....
T Consensus 127 ~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (361)
T 2oiz_A 127 ASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIA 206 (361)
T ss_dssp ESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSC
T ss_pred CCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEE
Confidence 4 58999999999988777 543221 0 001111122222232222211 111000
Q ss_pred ------eeeecCCCceEEEcCCCceeecccceEEEec------C----CCCEeEEEEeCCC-eEEEEeC-----------
Q 011126 356 ------KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG------H----SSEVLDLSWSKNG-FLLSSSA----------- 407 (493)
Q Consensus 356 ------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------h----~~~V~~l~~sp~g-~l~sgs~----------- 407 (493)
..+....++.+.+++...-.. ..+..+.- + ......++++|++ .++.+..
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~ 284 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEV--KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFP 284 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSC--EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCC
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCc--eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCC
Confidence 000011122333333211000 00011100 0 0111237899997 4444322
Q ss_pred CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC--eEEEe-cCCCCCeEEEEEccCCC
Q 011126 408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVVDY-TDIREIVSAVCYCPDGK 483 (493)
Q Consensus 408 Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~--~~~~~-~~~~~~I~sv~~spdG~ 483 (493)
.++|.+||+.+++.+..+.... +.+|+|+| ++++|++++. +.|.|||+.++ +++.. ..+......++++|||+
T Consensus 285 ~~~v~viD~~t~~~v~~i~~~~-p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 285 AAEIWVMDTKTKQRVARIPGRD-ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CSEEEEEETTTTEEEEEEECTT-CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CceEEEEECCCCcEEEEEecCC-eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 3589999999999999988445 99999999 9999998887 99999999999 88865 57788889999999986
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.49 E-value=1.4e-11 Score=118.22 Aligned_cols=230 Identities=10% Similarity=0.145 Sum_probs=148.4
Q ss_pred eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEE-ccCCCEEEEEEC-CCcEEE
Q 011126 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF-SLDGQYLASGGE-DGTVRV 310 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~-Dg~V~i 310 (493)
++......+++++++.++++...++.|.+|+..... +..+.......+|...+..+++ .+++.++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 334455668999999988888899999999976322 1111100011235567899999 467766666543 889999
Q ss_pred EecCCCeeeeeeeccC-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe--cC
Q 011126 311 WKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ--GH 387 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~h 387 (493)
|+ .+++.+..+.... ..+..+.+.++ ..++.. ......+.+++... +.+..+. ++
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~--------------~~~~~~i~~~~~~g-----~~~~~~~~~~~ 162 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVV--------------ECKVMRVIIFDQNG-----NVLHKFGCSKH 162 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEE--------------ETTTTEEEEECTTS-----CEEEEEECTTT
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCC--CCEEEE--------------ECCCCEEEEEcCCC-----CEEEEeCCCCc
Confidence 99 5666655553321 12233333222 222222 22234455555321 2233332 45
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC---CCcEEEEEEccCCCCEEEEEeCCC-eEEEEeCCCCe
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQ 462 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h---~~~V~~v~fsp~d~~~l~sgs~Dg-~V~IWdl~~~~ 462 (493)
...+..|+++|+| ++++...++.|++||.. +..+..+.. ...+..|+++| +++++++...++ .|++||.....
T Consensus 163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~ 240 (286)
T 1q7f_A 163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQL 240 (286)
T ss_dssp CSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCE
T ss_pred cCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCE
Confidence 5678999999999 77777789999999974 556666642 36789999999 899999988886 99999975443
Q ss_pred EEEecCC--CCCeEEEEEccCCCEEEEe
Q 011126 463 VVDYTDI--REIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 463 ~~~~~~~--~~~I~sv~~spdG~~l~s~ 488 (493)
+..+..+ ...+.+++++|+|+++++.
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 241 ISALESKVKHAQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp EEEEEESSCCSCEEEEEEETTTEEEEEE
T ss_pred EEEEcccCCCCcceeEEECCCCcEEEEC
Confidence 3333322 3357899999999877663
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.49 E-value=2.8e-12 Score=126.01 Aligned_cols=216 Identities=12% Similarity=0.113 Sum_probs=132.8
Q ss_pred cccceeccCCCeEE-eeecCCeEEEEECCCccccccccccceeee-cc-----cCCEEEEEEccCCCEEEEEECC-----
Q 011126 238 HGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AH-----EGSILTMKFSLDGQYLASGGED----- 305 (493)
Q Consensus 238 ~~~~~fsp~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H-----~~~I~~l~fspdg~~Lasgs~D----- 305 (493)
...++|+|+|++++ ++..++.|.+|+..+..... .+. .+ ...+..++|+|+|++|++++.+
T Consensus 45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~-------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-------HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN 117 (349)
T ss_dssp SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-------EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECS
T ss_pred CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE-------EEEcccccccccccccceEECCCCCEEEEEcccccccc
Confidence 34589999998654 55678999999987543221 122 12 2337889999999999998865
Q ss_pred -------CcEEEEecCCCeee---eeeeccCCCCceEEEeeCCCCceee-------eeccCccccceeeeec--------
Q 011126 306 -------GTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIP-------IDVDKEKIDKTKSLRK-------- 360 (493)
Q Consensus 306 -------g~V~iWdl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-------- 360 (493)
+.|.+||+.+++.. ..+..+. .+.++.+.+++. ++. ++..............
T Consensus 118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~--l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
T 1jmx_B 118 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMRAADDGS--LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSA 194 (349)
T ss_dssp SCEEECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCEEECTTSC--EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred cccccCCCeEEEEECCCccccceeeeccCCC-cccceeECCCCc--EEEccCcEEEEeCCCCceeccccccccCCccccC
Confidence 89999999885433 2232222 344555555443 222 1111111110000000
Q ss_pred ----------CCCce-----EEEcCCCc---------------eeeccc--ceEEEecCCCCEeEEEEeC-CC-eEEEEe
Q 011126 361 ----------SSDLT-----CVVLPPKV---------------FRLLEK--PLHEFQGHSSEVLDLSWSK-NG-FLLSSS 406 (493)
Q Consensus 361 ----------s~~~~-----~~~~~~~~---------------~~~~~~--~~~~~~~h~~~V~~l~~sp-~g-~l~sgs 406 (493)
..... .+.+.... ...... ....+..+...+..++|+| ++ +++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~- 273 (349)
T 1jmx_B 195 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV- 273 (349)
T ss_dssp CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-
T ss_pred ccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-
Confidence 00000 00000000 000000 0111223445678899999 88 77666
Q ss_pred CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (493)
Q Consensus 407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~ 466 (493)
++.|.+||+.+++.+..+.....+.+++|+| ++++|++++.++.|++||+.+++.+..
T Consensus 274 -~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 274 -LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp -ESEEEEEETTTTEEEEEEECSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred -cCeEEEEECccCeEEEEEcCCCCccceEECC-CCCEEEEecCCCeEEEEeccccceeee
Confidence 8999999999999988887666788999999 888888888899999999999987753
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.48 E-value=4.5e-13 Score=146.09 Aligned_cols=242 Identities=10% Similarity=0.025 Sum_probs=151.4
Q ss_pred cccceeccCCCeEEeeec---------CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126 238 HGSATLKPGDHELTLGQR---------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~---------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V 308 (493)
+.+++|+|||++|++++. ++.|++|++.+...... ..+ ...+..++|+|||++||.+. |+.|
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-----~~l---~~~~~~~~~SPDG~~la~~~-~~~i 132 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-----NEL---PRPIQYLCWSPVGSKLAYVY-QNNI 132 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----SCC---CSSBCCEEECSSTTCEEEEE-TTEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-----eec---CcccccceECCCCCEEEEEE-CCeE
Confidence 456899999999999876 78999999986543100 011 24588899999999999886 7899
Q ss_pred EEEecCCCeeeeeeeccCC------------------CCceEEEeeCCCCceeeeeccCccccceee-------------
Q 011126 309 RVWKVIEHERLDGFDVQDT------------------DPSCLYFTINHLSQLIPIDVDKEKIDKTKS------------- 357 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 357 (493)
++|++.+++.......... ....+.|++++...++. ..+.........
T Consensus 133 ~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~-~~d~~~~~~~~~~~~~~~~~~~~~~ 211 (719)
T 1z68_A 133 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYA-EFNDTDIPVIAYSYYGDEQYPRTIN 211 (719)
T ss_dssp EEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEE-EEECTTSCEEEEEECCSSSSCEEEE
T ss_pred EEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEE-EECCCCCceEEeeccCCCCCcccee
Confidence 9999988775433211111 11356666665433322 222111110000
Q ss_pred e------ecCCCceEEEcCCCceeec----ccceEEEecCCCCEeEEEEeCCC-eEEEEeCC----CeEEEEE----CCC
Q 011126 358 L------RKSSDLTCVVLPPKVFRLL----EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----KTVRLWQ----VGI 418 (493)
Q Consensus 358 ~------~~s~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~D----g~V~lWd----~~~ 418 (493)
+ .......+.+|+....... -.....+.+|...+..++|+|++ ++++.... ..|.+|| +.+
T Consensus 212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 291 (719)
T 1z68_A 212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT 291 (719)
T ss_dssp EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS
T ss_pred ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC
Confidence 0 0012225556655432210 00001234688889999999999 55554322 2488899 877
Q ss_pred CcEEEEe-----cCCCcEE-----EEEEccCCCCEEE--EEeCCC--eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCE
Q 011126 419 DRCLRVF-----SHNNYVT-----SVAFNPVDDNYFI--SGSIDG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV 484 (493)
Q Consensus 419 ~~~~~~~-----~h~~~V~-----~v~fsp~d~~~l~--sgs~Dg--~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~ 484 (493)
+++...+ .|...+. .+.|+| +++.|+ +...+| .|++||+.+++...+..+...+..+.+. +|+.
T Consensus 292 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~ 369 (719)
T 1z68_A 292 WDCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDS 369 (719)
T ss_dssp EECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSE
T ss_pred CceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCE
Confidence 7766555 3666666 889999 888544 344555 6888888888766666666678888877 8888
Q ss_pred EEEeecC
Q 011126 485 RQNSACN 491 (493)
Q Consensus 485 l~s~s~d 491 (493)
|+..+.+
T Consensus 370 i~~~~~~ 376 (719)
T 1z68_A 370 LFYSSNE 376 (719)
T ss_dssp EEEEESC
T ss_pred EEEEEec
Confidence 7766643
No 166
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.46 E-value=2.1e-11 Score=117.82 Aligned_cols=233 Identities=12% Similarity=0.063 Sum_probs=150.0
Q ss_pred cccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 238 HGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 238 ~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
...++|+|+|+ +++++..++.|.+|+.... . +.+..+...+.+|+|+|+|+++++...++.|.+||..++
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---L------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---E------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---e------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 34589999998 7888889999999998754 1 134456778999999999998877777789999999877
Q ss_pred eeeeeeecc----CCCCceEEEeeCCCCceeeeeccCcccc---ceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126 317 ERLDGFDVQ----DTDPSCLYFTINHLSQLIPIDVDKEKID---KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (493)
Q Consensus 317 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (493)
+........ ...+..+.+.++ ..++..+....... ............++.++.. ..+..+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------g~~~~~~~~~~ 172 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------GTLSAPIRDRV 172 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------SCEEEEECCCS
T ss_pred cEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCC------CCEEEeecCCC
Confidence 654332211 112223333332 22332211000000 0000000112234444432 11333455667
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECC-CCcE---EEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDRC---LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~-~~~~---~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
....++|+|++ .|++.+.++.|.+|++. .+.. ...+. +...+.++++++ +++++++. ++.|.+||.....+
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGDEL 249 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSCEE
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCCEE
Confidence 78899999999 66777888999999997 4544 23332 455677899999 89877776 88999999974333
Q ss_pred EEecCCCCCeEEEEE-ccCCCEEEEeecC
Q 011126 464 VDYTDIREIVSAVCY-CPDGKVRQNSACN 491 (493)
Q Consensus 464 ~~~~~~~~~I~sv~~-spdG~~l~s~s~d 491 (493)
..+..+.. +++++| .|+++.|++++.+
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETT
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCC
Confidence 34555555 899999 6999988887754
No 167
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.43 E-value=1.5e-10 Score=113.41 Aligned_cols=232 Identities=10% Similarity=0.062 Sum_probs=144.0
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC----CcEEEEe
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWK 312 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~V~iWd 312 (493)
....++|+|+|.+++++..++.|.+|+....... . .+..+...+.+|+|+|+|+++++...+ +.|.+||
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~--~-----~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK--R-----PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--E-----EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE--E-----EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 3456889999998888888999999998654321 1 122456789999999999988877666 6899999
Q ss_pred cCCCeeeeeeecc--CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 313 VIEHERLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 313 l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
..++.....+... ...+..+.+.+ ...++....... .......+..++.... .+..+..+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~--------~~~~~~~l~~~~~~~~-----~~~~~~~~~~~ 183 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGY--------STNPLGGVYYVSPDFR-----TVTPIIQNISV 183 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCB--------TTBCCEEEEEECTTSC-----CEEEEEEEESS
T ss_pred CCCCEEEEEEccCccCCcccceEECC--CCCEEEEecccc--------ccCCCceEEEEeCCCC-----EEEEeecCCCc
Confidence 8877644222211 11122223322 222222221100 0011234444443221 11222223345
Q ss_pred EeEEEEeCCC-eE-EEEeCCCeEEEEECCC-CcEEEEe--------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 391 VLDLSWSKNG-FL-LSSSADKTVRLWQVGI-DRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 391 V~~l~~sp~g-~l-~sgs~Dg~V~lWd~~~-~~~~~~~--------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
+..++|+|+| .| ++...++.|.+||+.+ +..+..+ .....+..+++++ +++++++...++.|.+||..
T Consensus 184 ~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTT
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECC-CCCEEEEEcCCCEEEEECCC
Confidence 7899999998 44 4556688999999964 3322211 1124788999999 89988888888999999995
Q ss_pred CCeEEEecCCCC------CeEEEEEccCCCEEEEeecC
Q 011126 460 RCQVVDYTDIRE------IVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 460 ~~~~~~~~~~~~------~I~sv~~spdG~~l~s~s~d 491 (493)
...+..+..... .+.+++|+|||+.|++++.+
T Consensus 263 g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 263 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 433333332222 68999999999877766543
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.41 E-value=1.6e-10 Score=113.70 Aligned_cols=227 Identities=11% Similarity=0.083 Sum_probs=148.8
Q ss_pred cccccceeccCCCeEEeeecC------------------------CeEEEEECCCccccccccccceee-ecccCCEEEE
Q 011126 236 DRHGSATLKPGDHELTLGQRM------------------------RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTM 290 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~d------------------------g~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l 290 (493)
..+..++++|+|+++++...+ ++|.+||....... ..+ .++-.....|
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~p~gi 96 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------QSSGKNLFYLPHGL 96 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------EEECTTTCSSEEEE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------eccCCCccCCceEE
Confidence 445669999999999888777 47999987644321 111 2445678999
Q ss_pred EEccCCCEEEEEECCCcEEEEecCCCe-eeeeeec---------cCCCCceEEEeeCCCCceeeeeccCccccceeeeec
Q 011126 291 KFSLDGQYLASGGEDGTVRVWKVIEHE-RLDGFDV---------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (493)
Q Consensus 291 ~fspdg~~Lasgs~Dg~V~iWdl~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (493)
+++|+|+++++...++.|++|+..... .+..+.. ....+..+.+.+. ...++..+.
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~------------- 162 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDG------------- 162 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEEC-------------
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeC-------------
Confidence 999999988888889999999975432 3333321 1111222333221 222222221
Q ss_pred CCCceEEEcCCCceeecccceEEEe----------cCCCCEeEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEec--
Q 011126 361 SSDLTCVVLPPKVFRLLEKPLHEFQ----------GHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-- 426 (493)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-- 426 (493)
.....+.+++... +.+..+. ++......|+++|+ + ++++...++.|++||..+++.+..+.
T Consensus 163 ~~~~~I~~~~~~g-----~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 163 YCNSRIVQFSPSG-----KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp SSCCEEEEECTTS-----CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred CCCCeEEEEcCCC-----CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 1233444444221 1222222 12344889999998 6 77788889999999999899988884
Q ss_pred -CCCcEEEEEEccCCCCEEEEEe-------CCCeEEEEeCCCCeEEEe----cCCCCCeEEEEEccCCCEEEEeec
Q 011126 427 -HNNYVTSVAFNPVDDNYFISGS-------IDGKVRIWEVRRCQVVDY----TDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 427 -h~~~V~~v~fsp~d~~~l~sgs-------~Dg~V~IWdl~~~~~~~~----~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+...+..++|+| +..+++.+ .+.+|++||+.+++++.. ..+...+..|+++|+|.++++...
T Consensus 238 ~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~ 311 (329)
T 3fvz_A 238 SFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH 311 (329)
T ss_dssp TTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESS
T ss_pred ccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECC
Confidence 667888999998 33333333 345899999999998865 356667999999999966665543
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.41 E-value=9.8e-13 Score=144.24 Aligned_cols=222 Identities=9% Similarity=0.054 Sum_probs=122.1
Q ss_pred ceeccCCCeEEeeecC---------CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 241 ATLKPGDHELTLGQRM---------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 241 ~~fsp~g~~lasgs~d---------g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
.+|+|||++|+.++.+ +.+.+||+.+.... .+..|.+.+...+|||||+.||.+. |+.|++|
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~--------~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~ 137 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--------TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVK 137 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--------CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEE
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE--------EcccCCCcceeeEECCCCCEEEEEE-CCeEEEE
Confidence 6789999999998876 56679999865421 2456778899999999999999884 6899999
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcC------CCceeecccceEEEe
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP------PKVFRLLEKPLHEFQ 385 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~------~~~~~~~~~~~~~~~ 385 (493)
++.+++..+. ........ +.. .....+. ..........+.-+.|+..+.+. ...+.+. ...
T Consensus 138 ~~~~~~~~~l-t~~g~~~~-~~~--g~~~~v~----~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~-----~~~ 204 (740)
T 4a5s_A 138 IEPNLPSYRI-TWTGKEDI-IYN--GITDWVY----EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS-----FYS 204 (740)
T ss_dssp SSTTSCCEEC-CSCCBTTT-EEE--SBCCHHH----HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE-----ECC
T ss_pred ECCCCceEEE-cCCCCccc-eec--Ccccccc----cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEE-----eec
Confidence 9987764321 11100000 000 0000000 00000000000111111111110 0001000 000
Q ss_pred ---cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC---C---cEEEEec------CCCcEEEEEEccCCCCEEEEEeC
Q 011126 386 ---GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---D---RCLRVFS------HNNYVTSVAFNPVDDNYFISGSI 449 (493)
Q Consensus 386 ---~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~---~---~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~ 449 (493)
++...+..+.+.+.| . ....+|++||+.+ + +...... |...+..++|+| |+++++....
T Consensus 205 ~~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~ 279 (740)
T 4a5s_A 205 DESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLR 279 (740)
T ss_dssp STTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEE
T ss_pred CCCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeC
Confidence 022233334443333 1 1112689999998 7 4444332 778899999999 8987665543
Q ss_pred ----CCeEEEEeCCCCe----EE---Ee--cCCCCCeE-----EEEEccCCCEEE-Eee
Q 011126 450 ----DGKVRIWEVRRCQ----VV---DY--TDIREIVS-----AVCYCPDGKVRQ-NSA 489 (493)
Q Consensus 450 ----Dg~V~IWdl~~~~----~~---~~--~~~~~~I~-----sv~~spdG~~l~-s~s 489 (493)
+..|++||+.+++ .. .+ ..+...|. .+.|+|||+.++ ..+
T Consensus 280 r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s 338 (740)
T 4a5s_A 280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIIS 338 (740)
T ss_dssp SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEE
T ss_pred CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEE
Confidence 3479999999876 22 11 33443333 688999999877 443
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.41 E-value=5.7e-12 Score=126.21 Aligned_cols=237 Identities=8% Similarity=-0.009 Sum_probs=139.5
Q ss_pred ccccceeccCCCeEEeeecC---CeEEEEECCCccccccccccceeeecccCC-EEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 237 RHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
.+..++|+|+|++|+..... ..|.+|+....... .+..+... +..+.|+|||++|+.++.++.|++||
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------EeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 35568999999998876543 46888887654321 11222223 23378999999999999999999999
Q ss_pred cCCCeeeeeeeccCCCCce-EEEeeCCCCceee-----eeccCcc--ccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126 313 VIEHERLDGFDVQDTDPSC-LYFTINHLSQLIP-----IDVDKEK--IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (493)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (493)
+.+++.......+...... ..+.......... ..+.... +.............+.+++.... ....+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g-----~~~~~ 183 (396)
T 3c5m_A 109 LETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG-----ELEVI 183 (396)
T ss_dssp TTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC-----CEEEE
T ss_pred CCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC-----cEEee
Confidence 9888765444433220000 0000000000000 0000000 00000001133445566654432 12333
Q ss_pred ecCCCCEeEEEEeC-CC-eEEEEeCC------CeEEEEECCCCcEEEEecC--CCcEEEEEEccCCCCEEEEEeCC----
Q 011126 385 QGHSSEVLDLSWSK-NG-FLLSSSAD------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSID---- 450 (493)
Q Consensus 385 ~~h~~~V~~l~~sp-~g-~l~sgs~D------g~V~lWd~~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~D---- 450 (493)
..+...+..+.|+| ++ .|+..+.+ ..|.+||+..+.......+ ...+..+.|+| ++++|+.++.+
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~ 262 (396)
T 3c5m_A 184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQT 262 (396)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTC
T ss_pred ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCCc
Confidence 35677889999999 67 56655543 4688899876654443333 23688899999 99987776554
Q ss_pred -CeEEEEeCCCCeEEEecCCCCCeEEEEEcc-CCCEEEEee
Q 011126 451 -GKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKVRQNSA 489 (493)
Q Consensus 451 -g~V~IWdl~~~~~~~~~~~~~~I~sv~~sp-dG~~l~s~s 489 (493)
+.|++||+.+++...+..... .. +.|+| ||++++.++
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 263 DRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp CEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEE
T ss_pred cceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEec
Confidence 459999999887654433222 33 89999 999888754
No 171
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.40 E-value=9.2e-12 Score=124.86 Aligned_cols=177 Identities=8% Similarity=0.027 Sum_probs=130.6
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCcccccc----ccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~----~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
.++.+++++...++++|+.++ ++||+++....... .+.. .....+.+ |+.|+| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 456699999999999999875 56698754331000 0111 12334667 999999 89999998 889999999
Q ss_pred cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (493)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 392 (493)
+.+...... ...|...+.
T Consensus 113 v~sl~~~~~--------------------------------------------------------------~~~~~~~v~ 130 (388)
T 1xip_A 113 LEELSEFRT--------------------------------------------------------------VTSFEKPVF 130 (388)
T ss_dssp SSSTTCEEE--------------------------------------------------------------EEECSSCEE
T ss_pred chhhhccCc--------------------------------------------------------------cceeeccee
Confidence 876542111 122344566
Q ss_pred EEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--E-Ee---
Q 011126 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V-DY--- 466 (493)
Q Consensus 393 ~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~-~~--- 466 (493)
++.+.+. .++++..||.|.+||+..+.... +...|+|++|+| +| ++.|..||++++|+...+++ . .+
T Consensus 131 ~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P 203 (388)
T 1xip_A 131 QLKNVNN-TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP 203 (388)
T ss_dssp EEEECSS-EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred eEEecCC-CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCC
Confidence 6666554 38888999999999999887654 456899999999 77 78899999999999988774 3 23
Q ss_pred ---c---CCCCCeEEEEEccCCCEEEEe
Q 011126 467 ---T---DIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 467 ---~---~~~~~I~sv~~spdG~~l~s~ 488 (493)
. +|...|.+|+|.++++++++=
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cccccccCCCeeEEEEEEecCCeEEEEE
Confidence 2 367889999999999998863
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.37 E-value=1e-10 Score=116.71 Aligned_cols=231 Identities=11% Similarity=0.100 Sum_probs=131.1
Q ss_pred EEeeecC--CeEEEEECCCccccccccccceee-ecccCCEEEEEEccCCCEEEEEECCCcEEEEecC-CCeeeeeeecc
Q 011126 250 LTLGQRM--RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQ 325 (493)
Q Consensus 250 lasgs~d--g~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~-~~~~~~~~~~~ 325 (493)
+++|+.. +.|.+|++......+..+ ... .++...+..++|+|+|++|++++.+ .|.+|++. +++........
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~---~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~ 80 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLI---KRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP 80 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEE---EEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEe---eEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee
Confidence 4555542 568887764322222211 111 1234467889999999999999988 99999997 77654332211
Q ss_pred C-CCCceEEEeeCCCCceeeeeccCccccceeeeec---CCCceEEEcCCCc-eeecccceEEEe-cCCCCEeEEEEeCC
Q 011126 326 D-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK---SSDLTCVVLPPKV-FRLLEKPLHEFQ-GHSSEVLDLSWSKN 399 (493)
Q Consensus 326 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~-~~~~~~~~~~~~-~h~~~V~~l~~sp~ 399 (493)
. ..+..+.+.+++.. ++.+..+..+. ..... ..++.+.+|+... ..+. ..+..+. .+...+.+++|+|+
T Consensus 81 ~~g~~~~~~~spdg~~-l~~~~~~~~~~---~~~~~~~~~~~g~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~spd 155 (365)
T 1jof_A 81 IGGHPRANDADTNTRA-IFLLAAKQPPY---AVYANPFYKFAGYGNVFSVSETGKLE-KNVQNYEYQENTGIHGMVFDPT 155 (365)
T ss_dssp CCSSGGGGCTTSCCEE-EEEEECSSTTC---CEEEEEESSSCCEEEEEEECTTCCEE-EEEEEEECCTTCCEEEEEECTT
T ss_pred cCCCCccEEECCCCCE-EEEEEecCCcc---eeccceeecCCceEEEEccCCCCcCc-ceEeeEEeCCCCcceEEEECCC
Confidence 1 11222222222210 01111110000 00000 0233444443321 1110 1111111 25668999999999
Q ss_pred C-eEEEEe-CCCeEEEEECC-CCcEE--EEec---CCCcEEEEEEccCCCCEEEEEeC-CCeEEEEeCC--CCeEE----
Q 011126 400 G-FLLSSS-ADKTVRLWQVG-IDRCL--RVFS---HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVR--RCQVV---- 464 (493)
Q Consensus 400 g-~l~sgs-~Dg~V~lWd~~-~~~~~--~~~~---h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~--~~~~~---- 464 (493)
| +|+++. .++.|++||+. +++.. ..+. |...+..++|+| ++++|++++. ++.|.+|++. ++++.
T Consensus 156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 234 (365)
T 1jof_A 156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHH 234 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence 9 676665 46899999998 66653 2332 467799999999 9998887775 7899999765 55532
Q ss_pred --Eec-----CCCC------CeEEEE-EccCCCEEEEeec
Q 011126 465 --DYT-----DIRE------IVSAVC-YCPDGKVRQNSAC 490 (493)
Q Consensus 465 --~~~-----~~~~------~I~sv~-~spdG~~l~s~s~ 490 (493)
... ++.. .+..++ |+|||++|+++..
T Consensus 235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 111 1121 488999 9999999887653
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.36 E-value=1.7e-10 Score=113.55 Aligned_cols=218 Identities=9% Similarity=0.100 Sum_probs=136.4
Q ss_pred ccccceeccCCCeEEeeecC---Ce--EEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC------
Q 011126 237 RHGSATLKPGDHELTLGQRM---RR--VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------ 305 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~d---g~--V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D------ 305 (493)
.+...+|+|+|++||..+.+ +. |.+|++...... .+..+.. +..+.|+|||+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~--------~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~ 130 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK--------KILEAKN-IRSLEWNEDSRKLLIVGFKRREDED 130 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE--------EEEEESE-EEEEEECTTSSEEEEEEECCCC---
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE--------EEEcCCC-ccceeECCCCCEEEEEEccCCCcCC
Confidence 34558999999999987654 34 677776643211 1222334 9999999999999887642
Q ss_pred ---------------------CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126 306 ---------------------GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (493)
Q Consensus 306 ---------------------g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 364 (493)
..|++||+.+++.+..+.. . ....+.+.+++ .++.......... .....
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~------~~~~~ 200 (347)
T 2gop_A 131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQ------YFKFW 200 (347)
T ss_dssp ------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCC------SSCCE
T ss_pred cEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEeccccccc------ccccc
Confidence 5699999988876444444 2 55566666554 2222211110000 00011
Q ss_pred eEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCC--------CeEEEEECCCCcEEEEec-CCCcEEE-
Q 011126 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD--------KTVRLWQVGIDRCLRVFS-HNNYVTS- 433 (493)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~D--------g~V~lWd~~~~~~~~~~~-h~~~V~~- 433 (493)
.+..++ ......+..+ ..+..+ +|+| +|+.++.+ ..|.+|| +++...... +...+..
T Consensus 201 ~l~~~d-------~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~ 268 (347)
T 2gop_A 201 DIYIWE-------DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQA 268 (347)
T ss_dssp EEEEEE-------TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEE
T ss_pred cEEEeC-------CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCc
Confidence 233332 1112223333 444444 9999 77666644 4688888 555544444 5677886
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+.|+ ++ ++++++.++.++|| +.+++...+..+...|.+++|+| .++++++.+
T Consensus 269 ~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~ 320 (347)
T 2gop_A 269 KIKD--GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETA 320 (347)
T ss_dssp EEET--TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECS
T ss_pred cEEc--Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCC
Confidence 8997 56 89999999999999 88777766666677899999999 566665543
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.36 E-value=7e-11 Score=118.20 Aligned_cols=227 Identities=9% Similarity=-0.016 Sum_probs=137.8
Q ss_pred cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEE--EccCCCEEEEE---------------
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK--FSLDGQYLASG--------------- 302 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~--fspdg~~Lasg--------------- 302 (493)
...|+|+|+.|+.++.++.|++|++....... .+..+...+.... ++|++++|+..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-------~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~ 157 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV-------VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK 157 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEE-------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCccee-------eeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence 46899999999999999999999998654221 2334555554444 48999988743
Q ss_pred -------ECCCcEEEEecCCCeeeeeeeccCCCCceEEEee-CCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 303 -------GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI-NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 303 -------s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
..+..|.+||+.+++..... ..........+++ ++.. ++........ .....+.+++..
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~-l~~~~~~~~~---------~~~~~l~~~d~~-- 224 (388)
T 3pe7_A 158 FHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDST-VAFCHEGPHD---------LVDARMWLINED-- 224 (388)
T ss_dssp HHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEE-EEEEECSCTT---------TSSCSEEEEETT--
T ss_pred hhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCE-EEEEEecCCC---------CCcceEEEEeCC--
Confidence 24467999999888654333 2233334445554 3321 2111111000 012233333322
Q ss_pred eecccceEEEecCC--CCEeEEEEeCCC-eEEEEe-C-CC---eEEEEECCCCcEEEEecCCCc------EEEEEEccCC
Q 011126 375 RLLEKPLHEFQGHS--SEVLDLSWSKNG-FLLSSS-A-DK---TVRLWQVGIDRCLRVFSHNNY------VTSVAFNPVD 440 (493)
Q Consensus 375 ~~~~~~~~~~~~h~--~~V~~l~~sp~g-~l~sgs-~-Dg---~V~lWd~~~~~~~~~~~h~~~------V~~v~fsp~d 440 (493)
......+..+. ..+..++|+|+| .|+..+ . ++ .|.+||+.+++.......... ...+.|+| +
T Consensus 225 ---~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-d 300 (388)
T 3pe7_A 225 ---GTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-D 300 (388)
T ss_dssp ---SCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-E
T ss_pred ---CCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-C
Confidence 11223333343 257788999999 554433 2 22 399999998875433222110 11237999 8
Q ss_pred CCEEEEE---------eCCCeEEEEeCCCCeEEEecCCCC-----------CeEEEEEccCCCEEEEeec
Q 011126 441 DNYFISG---------SIDGKVRIWEVRRCQVVDYTDIRE-----------IVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 441 ~~~l~sg---------s~Dg~V~IWdl~~~~~~~~~~~~~-----------~I~sv~~spdG~~l~s~s~ 490 (493)
++.|+.. ..+..|++||+.++++..+..+.. .+..++|+|||+.|+.++.
T Consensus 301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp ECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 8877754 456789999999998876666655 5788999999999887764
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.33 E-value=2.8e-11 Score=130.49 Aligned_cols=183 Identities=12% Similarity=0.117 Sum_probs=128.7
Q ss_pred ccccceeccCCCeEEeeecC----------CeEEEEECCCcc----ccccccccceeee-cccCCEEEEEEccCCCEEEE
Q 011126 237 RHGSATLKPGDHELTLGQRM----------RRVRVHPVKKQS----RELSSLYTGQEFL-AHEGSILTMKFSLDGQYLAS 301 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~d----------g~V~vwd~~~~~----~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Las 301 (493)
.+..++|+|||+.|++++.+ ..|++|++.... ... +.+. .+...+..+.|+|||++|+.
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~SpDG~~la~ 204 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV------RELSDDAHRFVTGPRLSPDGRQAVW 204 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS------EESSCSCSSEECCCEECTTSSEEEE
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce------eEEEecCCCcccCceECCCCCEEEE
Confidence 44568999999999998876 589999987621 111 1233 45677888999999999998
Q ss_pred EECCC--------cEEEEecC-CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC
Q 011126 302 GGEDG--------TVRVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (493)
Q Consensus 302 gs~Dg--------~V~iWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 372 (493)
++.++ .|++||+. ++....
T Consensus 205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~---------------------------------------------------- 232 (662)
T 3azo_A 205 LAWDHPRMPWEGTELKTARVTEDGRFAD---------------------------------------------------- 232 (662)
T ss_dssp EEECTTCCTTTCEEEEEEEECTTSCEEE----------------------------------------------------
T ss_pred EECCCCCCCCCCcEEEEEEECCCCcccc----------------------------------------------------
Confidence 87553 68888886 341100
Q ss_pred ceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCC--eEEEEECCCCcEEEEecCCCc---------EEEEEEccCC
Q 011126 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHNNY---------VTSVAFNPVD 440 (493)
Q Consensus 373 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg--~V~lWd~~~~~~~~~~~h~~~---------V~~v~fsp~d 440 (493)
......+|...+..++|+|+| +++++..++ .|.+||+.+++......+... +..++|+| +
T Consensus 233 -------~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~ 304 (662)
T 3azo_A 233 -------TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-N 304 (662)
T ss_dssp -------EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-T
T ss_pred -------cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-C
Confidence 011123456778899999999 778888888 566667667766554443221 56789999 8
Q ss_pred CCEEEEEeCCCeEEEE--eCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126 441 DNYFISGSIDGKVRIW--EVRRCQVVDYTDIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 441 ~~~l~sgs~Dg~V~IW--dl~~~~~~~~~~~~~~I~sv~~spdG~~l~s 487 (493)
+.+++++.. +.++|| |+.++++..+..+...+..+ ++++++.++.
T Consensus 305 ~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~~ 351 (662)
T 3azo_A 305 GLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAVG 351 (662)
T ss_dssp SCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEEE
T ss_pred CEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEEE
Confidence 999999998 999999 77777776777777777766 2566665443
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.30 E-value=2.4e-11 Score=130.94 Aligned_cols=193 Identities=9% Similarity=0.003 Sum_probs=130.2
Q ss_pred eeecccccceeccCCCeEEee--ecCCeEEEEECCCccccccccccceeeecccCCEE---------EEEEc--cCCCE-
Q 011126 233 RIIDRHGSATLKPGDHELTLG--QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL---------TMKFS--LDGQY- 298 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~~lasg--s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~---------~l~fs--pdg~~- 298 (493)
.+...+..+++++++-+++.. ..+++..||....... .+.+..|...+. ...|+ |||++
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-------EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-------EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-------cceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 344556668889887677776 5688999998632211 123445555555 56666 99998
Q ss_pred EEEEEC-CCcEEEEecC--C-CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 299 LASGGE-DGTVRVWKVI--E-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 299 Lasgs~-Dg~V~iWdl~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
|+.++. +..|.+|++. . +. ...+...
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~------------------------------------------------- 123 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-PRPLTPV------------------------------------------------- 123 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-CEECSCC-------------------------------------------------
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-CEeccCC-------------------------------------------------
Confidence 776554 4455555543 1 21 1111000
Q ss_pred eecccceEEEecCCCCEeEEEEeCCC-eEEEEeCC----------CeEEEEECCC------CcEEEEe-cCCCcEEEEEE
Q 011126 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----------KTVRLWQVGI------DRCLRVF-SHNNYVTSVAF 436 (493)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~D----------g~V~lWd~~~------~~~~~~~-~h~~~V~~v~f 436 (493)
....|...+..++|+|+| .|+.++.+ ..|++||+.+ +...... .+...+..++|
T Consensus 124 --------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 195 (662)
T 3azo_A 124 --------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRL 195 (662)
T ss_dssp --------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEE
T ss_pred --------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceE
Confidence 000145567899999999 88887776 5899999998 6665555 56678899999
Q ss_pred ccCCCCEEEEEeCC--------CeEEEEeCC-CC---eEEEec-CCCCCeEEEEEccCCCEEEEeecC
Q 011126 437 NPVDDNYFISGSID--------GKVRIWEVR-RC---QVVDYT-DIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 437 sp~d~~~l~sgs~D--------g~V~IWdl~-~~---~~~~~~-~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+| |+++|+.++.+ ..|++||+. ++ +...+. .+...+..+.|+|||++++++..+
T Consensus 196 Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~ 262 (662)
T 3azo_A 196 SP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRT 262 (662)
T ss_dssp CT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTT
T ss_pred CC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCC
Confidence 99 99999988755 379999999 57 555444 346789999999999966665543
No 177
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.29 E-value=3.3e-10 Score=108.84 Aligned_cols=212 Identities=11% Similarity=0.035 Sum_probs=144.6
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
.+++|++++.++.|.+||.++.+.. . .+..|. ..+.++.++|+|++|+ +.++.|..||. +++.+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~-w------~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV-W------EYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE-E------EEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE-E------EeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence 4578999999999999998655432 1 233444 4688999999999888 45778999999 8888888876
Q ss_pred cCC-CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe------cCCCCEeEEEEe
Q 011126 325 QDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ------GHSSEVLDLSWS 397 (493)
Q Consensus 325 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~s 397 (493)
+.. ......+. ....++..... ....++.++... +.+..+. ++......+++.
T Consensus 74 ~~~~~~~~~~~~--~dG~~lv~~~~-------------~~~~v~~vd~~G-----k~l~~~~~~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 74 PAGCEMQTARIL--PDGNALVAWCG-------------HPSTILEVNMKG-----EVLSKTEFETGIERPHAQFRQINKN 133 (276)
T ss_dssp CTTCEEEEEEEC--TTSCEEEEEES-------------TTEEEEEECTTS-----CEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred CCCccccccEEC--CCCCEEEEecC-------------CCCEEEEEeCCC-----CEEEEEeccCCCCcccccccCceEC
Confidence 421 12222222 22222222111 022233332211 1111111 222345566788
Q ss_pred CCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCC------
Q 011126 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI------ 469 (493)
Q Consensus 398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~------ 469 (493)
++| ++++...++.|..||.. ++.+..+.....+.++.+.| ++++++++..+++|..+|..+++++. +...
T Consensus 134 ~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 134 KKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp TTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred CCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 888 88999999999999998 99999988666677888899 99999999989999999999998874 3211
Q ss_pred CCCeEEEEEccCCCEEEEee
Q 011126 470 REIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 470 ~~~I~sv~~spdG~~l~s~s 489 (493)
-..++.++..++|.++++..
T Consensus 212 l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEE
T ss_pred ccccccceEcCCCCEEEEec
Confidence 12378999999999998874
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.28 E-value=4e-11 Score=119.96 Aligned_cols=226 Identities=5% Similarity=-0.056 Sum_probs=134.0
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEE-------------------EEEccCCCEEEE
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-------------------MKFSLDGQYLAS 301 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~-------------------l~fspdg~~Las 301 (493)
..|+|+|++|+..+.++.|++|++....... .+..+...... +.|+|+++.++.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~ 158 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQV-------IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKF 158 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEE-------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEE-------EEecccccCCCCCEEEeccCCccccccccccccCCCCcceee
Confidence 6799999999999999999999987644211 11222222222 356777776655
Q ss_pred E-----ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126 302 G-----GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (493)
Q Consensus 302 g-----s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (493)
+ ..+..|++||+.+++...... .........+.+.....++........ .....+.+++...
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~---------~~~~~l~~~d~~~--- 225 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIETGELEVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHD---------LVDARMWLVNEDG--- 225 (396)
T ss_dssp HHHHHTCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEECSCSS---------SCSCCCEEEETTS---
T ss_pred eeeccCCCcceEEEEECCCCcEEeecc-CCcccccceECCCCCCEEEEEecCCCC---------CCCceEEEEECCC---
Confidence 4 356789999998877544332 222333344444111112221110000 0002233333211
Q ss_pred cccceEEEecC--CCCEeEEEEeCCC-eEEEEeCC-----CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe
Q 011126 377 LEKPLHEFQGH--SSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS 448 (493)
Q Consensus 377 ~~~~~~~~~~h--~~~V~~l~~sp~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs 448 (493)
.....+..+ ...+..++|+|+| +|+.++.+ +.|++||+.+++......... .. +.|+|.++++|++++
T Consensus 226 --~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 226 --SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp --CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEE
T ss_pred --CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEec
Confidence 112222222 2357889999999 66665443 459999999887655443332 33 889875677877754
Q ss_pred ----------------CCCeEEEEeCCCCeEEEecCCCC-----------CeEEEEEccCCCEEEEeec
Q 011126 449 ----------------IDGKVRIWEVRRCQVVDYTDIRE-----------IVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 449 ----------------~Dg~V~IWdl~~~~~~~~~~~~~-----------~I~sv~~spdG~~l~s~s~ 490 (493)
.++.|++||+.+++...+..+.. .+..++|+|||+.|+..+.
T Consensus 302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 302 CDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp CCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 34789999999887655544443 2567899999999887764
No 179
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.25 E-value=7.2e-10 Score=104.94 Aligned_cols=225 Identities=8% Similarity=-0.043 Sum_probs=139.5
Q ss_pred ccccceeccCCCeEE-eeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 237 RHGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 237 ~~~~~~fsp~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
....++++++|.+++ +...++.|.+|+......... ...+...+..|+++++|+++++.. ++.|.+||...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence 344588999999777 557789999998754332111 012335678899999999666555 88999999865
Q ss_pred CeeeeeeeccC-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE
Q 011126 316 HERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (493)
Q Consensus 316 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (493)
.... .+.... ..+..+.+.+ ...++.... ....+..++...... ......+...+.+|
T Consensus 97 ~~~~-~~~~~~~~~p~~i~~~~--~g~l~v~~~--------------~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i 155 (270)
T 1rwi_B 97 NNQT-VLPFDGLNYPEGLAVDT--QGAVYVADR--------------GNNRVVKLAAGSKTQ----TVLPFTGLNDPDGV 155 (270)
T ss_dssp SCCE-ECCCCSCSSEEEEEECT--TCCEEEEEG--------------GGTEEEEECTTCCSC----EECCCCSCCSCCCE
T ss_pred ceEe-eeecCCcCCCcceEECC--CCCEEEEEC--------------CCCEEEEEECCCcee----EeeccccCCCceeE
Confidence 5432 221111 1222333322 222222221 223344443322110 11111233467889
Q ss_pred EEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec-CCCC
Q 011126 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIRE 471 (493)
Q Consensus 395 ~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~-~~~~ 471 (493)
+++++| ++++...++.|.+||........... +...+.+|+++| ++.++++...++.|.+|+..+....... .+..
T Consensus 156 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~ 234 (270)
T 1rwi_B 156 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN 234 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred EEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence 999998 66666678899999988766544322 446789999999 8888888878899999999876554432 2335
Q ss_pred CeEEEEEccCCCEEEEeecC
Q 011126 472 IVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 472 ~I~sv~~spdG~~l~s~s~d 491 (493)
.+.+++++|+|+++++...+
T Consensus 235 ~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 235 TPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp CEEEEEECTTCCEEEEEGGG
T ss_pred CceeEEECCCCCEEEEECCC
Confidence 78999999999876665443
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.25 E-value=3.5e-10 Score=110.87 Aligned_cols=181 Identities=10% Similarity=0.066 Sum_probs=132.1
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
..+.+++|++++..++....++.+++|.-. ....+..+...+.+++|+|+|++++++..++.|.+||..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE----------PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE----------EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred cccceeeecCCccceeEEeecccCcccccc----------eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence 345668899998888887888888888321 1123456677789999999999888888899999999876
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
++.... ...+...+.+++
T Consensus 76 ~~~~~~--------------------------------------------------------------~~~~~~~~~~i~ 93 (333)
T 2dg1_A 76 KEIKRP--------------------------------------------------------------FVSHKANPAAIK 93 (333)
T ss_dssp CCEEEE--------------------------------------------------------------EECSSSSEEEEE
T ss_pred CcEEEE--------------------------------------------------------------eeCCCCCcceEE
Confidence 542110 112346788999
Q ss_pred EeCCC-eEEEEeCC----CeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeC------CCeEEEEeCCCC
Q 011126 396 WSKNG-FLLSSSAD----KTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEVRRC 461 (493)
Q Consensus 396 ~sp~g-~l~sgs~D----g~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~------Dg~V~IWdl~~~ 461 (493)
++|+| ++++...+ +.|.+||..++.....+. +...++.++++| +++++++... .+.|..||..++
T Consensus 94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCC
Confidence 99999 66665555 689999998877654432 456799999999 8988887654 366777887766
Q ss_pred eEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 462 QVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
++..+......+..++|+|||+.|+++.
T Consensus 173 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 200 (333)
T 2dg1_A 173 TVTPIIQNISVANGIALSTDEKVLWVTE 200 (333)
T ss_dssp CEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred EEEEeecCCCcccceEECCCCCEEEEEe
Confidence 6655444445688999999999766554
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.22 E-value=1.5e-09 Score=118.36 Aligned_cols=232 Identities=6% Similarity=-0.081 Sum_probs=141.2
Q ss_pred cccceeccCCCeEEeeecCC-----eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc-----
Q 011126 238 HGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----- 307 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg-----~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~----- 307 (493)
+..++|+|||++||.+..++ .|++||+.+...... .+. + ..+..++|+|||+.|+.++.++.
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------VLE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------EEE-E-ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------ccc-C-cccceEEEEeCCCEEEEEEECCcccccc
Confidence 34589999999999766543 899999986543211 111 1 23667999999999999988876
Q ss_pred -----------EEEEecCCCeee--eeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC
Q 011126 308 -----------VRVWKVIEHERL--DGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (493)
Q Consensus 308 -----------V~iWdl~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 372 (493)
|++|++.++... ..+...... .....+++++...++..... ......+.+++..
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-----------~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG-----------CDPVNRLWYCDLQ 267 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS-----------SSSCCEEEEEEGG
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc-----------CCCccEEEEEECc
Confidence 999999877632 112222112 22334443332221111100 0013344444432
Q ss_pred cee--e-cccceEEEecCCCCEeEEEEeCCC-eEEEEeC-C---CeEEEEECCCCc---EEEEecCCC--cEEEEEEccC
Q 011126 373 VFR--L-LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-D---KTVRLWQVGIDR---CLRVFSHNN--YVTSVAFNPV 439 (493)
Q Consensus 373 ~~~--~-~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~-D---g~V~lWd~~~~~---~~~~~~h~~--~V~~v~fsp~ 439 (493)
... . .......+..+...+.. .|+|+| .|+..+. + ..|.+||+.++. ....+.|.. .+..+.|++
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 345 (710)
T 2xdw_A 268 QESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR- 345 (710)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-
T ss_pred ccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-
Confidence 200 0 00124555666666655 488887 5554443 2 369999998764 233444544 788899997
Q ss_pred CCCEEEEEeCCCe--EEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126 440 DDNYFISGSIDGK--VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 440 d~~~l~sgs~Dg~--V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
++.++++...|+. |++|++.+++.+ .+..+...+..++++|+++.++.+..
T Consensus 346 ~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 346 SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe
Confidence 7888888888884 667788667644 45555677899999999987765543
No 182
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.18 E-value=1.2e-08 Score=98.59 Aligned_cols=241 Identities=8% Similarity=-0.013 Sum_probs=142.2
Q ss_pred cccccceeccCCCeEEe-------eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCc
Q 011126 236 DRHGSATLKPGDHELTL-------GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGT 307 (493)
Q Consensus 236 ~~~~~~~fsp~g~~las-------gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~ 307 (493)
.....++|+++|.++++ +..++.|.+|+....... .+.. ....++...+..+.++++ |+++++ .....
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~ 93 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT--VICK-PEVNGYGGIPAGCQCDRDANQLFVA-DMRLG 93 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE--EEEC-CEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE--EEEe-cccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence 34456889999988888 678899999987644321 1100 111235577999999999 765554 44447
Q ss_pred EEEEecCCCeeeee-eecc----CCCCceEEEeeCCCCceeeeeccCccc-cceeeeecCCCceEEEcCCCceeecccce
Q 011126 308 VRVWKVIEHERLDG-FDVQ----DTDPSCLYFTINHLSQLIPIDVDKEKI-DKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (493)
Q Consensus 308 V~iWdl~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (493)
|.+||.. ++.... .... ...+..+.+.++ ..++......... .............+..++.. .. .
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-----~ 164 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-----M 164 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-----E
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-CC-----E
Confidence 9999987 654322 2111 112333333322 2233222111000 00000000111344444432 11 1
Q ss_pred EEEecCCCCEeEEEEe----CCC-eE-EEEeCCCeEEEEECC-CCcE-----EEEec-CC-CcEEEEEEccCCCCEEEEE
Q 011126 382 HEFQGHSSEVLDLSWS----KNG-FL-LSSSADKTVRLWQVG-IDRC-----LRVFS-HN-NYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 382 ~~~~~h~~~V~~l~~s----p~g-~l-~sgs~Dg~V~lWd~~-~~~~-----~~~~~-h~-~~V~~v~fsp~d~~~l~sg 447 (493)
..+..+......++|+ |++ .| ++...++.|.+||+. .+.. ...+. +. ..+..+++++ +++++++.
T Consensus 165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~ 243 (314)
T 1pjx_A 165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVAN 243 (314)
T ss_dssp EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEE
T ss_pred EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEE
Confidence 1222334456889999 998 54 455578999999986 3432 22222 22 6788999999 99999988
Q ss_pred eCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126 448 SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 448 s~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
..++.|.+||..+++.+ .+..+...+.+++|+|+|+.|.+++.
T Consensus 244 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred cCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence 88999999999866654 34444578999999999996666543
No 183
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.16 E-value=3.6e-08 Score=95.30 Aligned_cols=230 Identities=9% Similarity=0.089 Sum_probs=141.0
Q ss_pred cceeccC-CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126 240 SATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 240 ~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
...|+|+ +.++++....+.|..|+....... ...+...+.+++++++|+++++ . +..|.+||..+++.
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------RVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------EEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcEE---------EEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 3678885 556677778899999998754321 1124567999999999995554 4 56799999988765
Q ss_pred eeeeeccCCCC--ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 319 LDGFDVQDTDP--SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 319 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
........... ....+.......++.......... .......+.++.++... .+..+..+......++|
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~---~~~~~~~~~l~~~d~~g------~~~~~~~~~~~pngi~~ 156 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP---AVLERHQGALYSLFPDH------HVKKYFDQVDISNGLDW 156 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT---TBCCTTCEEEEEECTTS------CEEEEEEEESBEEEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccc---ccccCCCcEEEEEECCC------CEEEEeeccccccceEE
Confidence 43322211111 111122222233333221111000 00001222333333321 11122233445678999
Q ss_pred eCCC--eEEEEeCCCeEEEEEC--CCCcEE--EEe---c-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 011126 397 SKNG--FLLSSSADKTVRLWQV--GIDRCL--RVF---S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD- 465 (493)
Q Consensus 397 sp~g--~l~sgs~Dg~V~lWd~--~~~~~~--~~~---~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~- 465 (493)
+|++ ++++.+.++.|.+|++ .++... +.+ . +...+..+++.+ ++++.++....+.|.+||..+++++.
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 9998 4466677899999997 455432 222 2 346788999999 89988888888999999999888775
Q ss_pred ecCCCCCeEEEEEc-cCCCEEEEeec
Q 011126 466 YTDIREIVSAVCYC-PDGKVRQNSAC 490 (493)
Q Consensus 466 ~~~~~~~I~sv~~s-pdG~~l~s~s~ 490 (493)
+..+...+++++|. ||++.|.+++.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 44444689999998 99988776654
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.15 E-value=7.7e-09 Score=98.91 Aligned_cols=191 Identities=10% Similarity=0.139 Sum_probs=121.5
Q ss_pred ccccee-ccCCCeEEeeec-CCeEEEEECCCccccccccccceee-ecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126 238 HGSATL-KPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 238 ~~~~~f-sp~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~ 314 (493)
...+++ .+++.++++... ++.|++|+..... +. .+ ..+...+..|+++|+|+++++...++.|++|+..
T Consensus 79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~--~~------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 150 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF--VR------KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN 150 (286)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEECTTSCE--EE------EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred ceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcE--EE------EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC
Confidence 345788 577777777644 8899999944221 11 12 1344578999999999988887788999999964
Q ss_pred CCeeeeeeeccC--CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec--CCCC
Q 011126 315 EHERLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG--HSSE 390 (493)
Q Consensus 315 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~ 390 (493)
++.+..+.... ..+..+.+.++ ..++.. ...+..+.+|+.. .+.+..+.. +...
T Consensus 151 -g~~~~~~~~~~~~~~p~~i~~~~~--g~l~v~--------------~~~~~~i~~~~~~-----g~~~~~~~~~g~~~~ 208 (286)
T 1q7f_A 151 -GNVLHKFGCSKHLEFPNGVVVNDK--QEIFIS--------------DNRAHCVKVFNYE-----GQYLRQIGGEGITNY 208 (286)
T ss_dssp -SCEEEEEECTTTCSSEEEEEECSS--SEEEEE--------------EGGGTEEEEEETT-----CCEEEEESCTTTSCS
T ss_pred -CCEEEEeCCCCccCCcEEEEECCC--CCEEEE--------------ECCCCEEEEEcCC-----CCEEEEEccCCccCC
Confidence 55444443221 12223333222 222222 1223344444432 122333433 3467
Q ss_pred EeEEEEeCCC-eEEEEeCCC-eEEEEECCCCcEEEEec-C--CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126 391 VLDLSWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFS-H--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg-~V~lWd~~~~~~~~~~~-h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~ 461 (493)
+..|+++++| ++++...++ .|.+||. .++.+..+. + ...+.+++++| +++++++ +.|++|++|++...
T Consensus 209 p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 209 PIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 8999999999 777777775 9999995 456666664 2 33578999999 8887777 67999999998653
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.15 E-value=1.3e-09 Score=118.53 Aligned_cols=187 Identities=12% Similarity=0.046 Sum_probs=122.6
Q ss_pred ccccceeccCCCeEE-----eeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc----
Q 011126 237 RHGSATLKPGDHELT-----LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT---- 307 (493)
Q Consensus 237 ~~~~~~fsp~g~~la-----sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~---- 307 (493)
.+..++|+|||++|| .|+.+..|++||+.+....... .+... ....+.|+|||+.|+.++.|..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-----~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-----VIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-----CBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-----ccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence 344589999999999 5666689999999876532000 11111 1257899999999999998876
Q ss_pred ---------EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 308 ---------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 308 ---------V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
|++|++.++.....
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~--------------------------------------------------------- 217 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDT--------------------------------------------------------- 217 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCE---------------------------------------------------------
T ss_pred cccCCCCCEEEEEECCCCchhce---------------------------------------------------------
Confidence 88888765541000
Q ss_pred cceEEEecCCCCEeEEEEeCCC-eEEEEeCCC----eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe---CC
Q 011126 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK----TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS---ID 450 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg----~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs---~D 450 (493)
.+.....|...+..+.|+|+| +|+..+.++ .|.+|+..++.......+...+....| | ++.+++... .+
T Consensus 218 -lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~ 294 (695)
T 2bkl_A 218 -VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPR 294 (695)
T ss_dssp -EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-E-TTEEEEEECTTCTT
T ss_pred -EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-c-CCcEEEEECCCCCC
Confidence 011122355678899999999 676666555 677777766665555556666677777 5 455555544 25
Q ss_pred CeEEEEeCCCCeE---EEecCC--CCCeEEEEEccCCCEEEEeecC
Q 011126 451 GKVRIWEVRRCQV---VDYTDI--REIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 451 g~V~IWdl~~~~~---~~~~~~--~~~I~sv~~spdG~~l~s~s~d 491 (493)
++|.+||+.+++. ..+..+ ...+..++|+ ++.++++...+
T Consensus 295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d 339 (695)
T 2bkl_A 295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD 339 (695)
T ss_dssp CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET
T ss_pred CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC
Confidence 8999999987652 333333 4568888888 66666665543
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.15 E-value=1.1e-08 Score=100.61 Aligned_cols=202 Identities=10% Similarity=0.115 Sum_probs=132.7
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCcccccccccc---ceeeecccCCEEEEEEcc-CCCEEEEEE-CCCcEEEE
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYT---GQEFLAHEGSILTMKFSL-DGQYLASGG-EDGTVRVW 311 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~---~~~l~~H~~~I~~l~fsp-dg~~Lasgs-~Dg~V~iW 311 (493)
....++++|+|+++++...+++|++|+.......+..+.. ...-.++-.....|+|+| +|.++++.+ .++.|++|
T Consensus 92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF 171 (329)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence 3445899999999999989999999997644211211100 000024555789999999 888888876 68999999
Q ss_pred ecCCCeeeeeeeccCCC----------CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126 312 KVIEHERLDGFDVQDTD----------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (493)
+ .++..+..+...... +..+.+.+.. ..++ +.......+.+|+... .+.+
T Consensus 172 ~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~--------------v~d~~~~~I~~~~~~~----G~~~ 231 (329)
T 3fvz_A 172 S-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLC--------------VADRENGRIQCFKTDT----KEFV 231 (329)
T ss_dssp C-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEE--------------EEETTTTEEEEEETTT----CCEE
T ss_pred c-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEE--------------EEECCCCEEEEEECCC----CcEE
Confidence 9 566666555332211 2222222211 1122 2223344455554431 2223
Q ss_pred EEE--ecCCCCEeEEEEeCCC-eEEEEe-------CCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEE
Q 011126 382 HEF--QGHSSEVLDLSWSKNG-FLLSSS-------ADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 382 ~~~--~~h~~~V~~l~~sp~g-~l~sgs-------~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sg 447 (493)
..+ ..+...+..++|+| + .+++.+ .+.+|++||+.+++.+..+. +...+..|+++| ++.++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad 309 (329)
T 3fvz_A 232 REIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGD 309 (329)
T ss_dssp EEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEE
T ss_pred EEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEE
Confidence 344 24667889999999 6 333333 34589999999999999883 667899999999 89899999
Q ss_pred eCCCeEEEEeCCC
Q 011126 448 SIDGKVRIWEVRR 460 (493)
Q Consensus 448 s~Dg~V~IWdl~~ 460 (493)
..+++|++|++..
T Consensus 310 ~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 310 AHTNTVWKFTLTE 322 (329)
T ss_dssp SSSCCEEEEEEEE
T ss_pred CCCCEEEEEeCCc
Confidence 9999999999753
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.12 E-value=1.2e-09 Score=107.53 Aligned_cols=165 Identities=13% Similarity=0.139 Sum_probs=108.7
Q ss_pred ceeccCCCeEEeee---------cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---Cc-
Q 011126 241 ATLKPGDHELTLGQ---------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GT- 307 (493)
Q Consensus 241 ~~fsp~g~~lasgs---------~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~- 307 (493)
.++ +|++++... .++.|.+|++...... .+ ..+..++|+|||++|+.++.+ +.
T Consensus 20 ~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--------~l----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 20 PRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR--------FI----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE--------EE----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred ceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE--------Ec----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 455 777776532 3677999998754311 12 467889999999999887754 33
Q ss_pred -EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126 308 -VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (493)
Q Consensus 308 -V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
|.+|++.+++..... .
T Consensus 86 ~l~~~~~~~g~~~~l~--------------------------------------------------------------~- 102 (347)
T 2gop_A 86 EIWVADLETLSSKKIL--------------------------------------------------------------E- 102 (347)
T ss_dssp EEEEEETTTTEEEEEE--------------------------------------------------------------E-
T ss_pred eEEEEECCCCceEEEE--------------------------------------------------------------c-
Confidence 667777655432111 1
Q ss_pred CCCCEeEEEEeCCC-eEEEEeC---------------------------CCeEEEEECCCCcEEEEecCCCcEEEEEEcc
Q 011126 387 HSSEVLDLSWSKNG-FLLSSSA---------------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438 (493)
Q Consensus 387 h~~~V~~l~~sp~g-~l~sgs~---------------------------Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp 438 (493)
+.. +..++|+|+| .|+.++. ...|.+||+.+++.+..+... .+..+.|+|
T Consensus 103 ~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~sp 180 (347)
T 2gop_A 103 AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHR 180 (347)
T ss_dssp ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEET
T ss_pred CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCC
Confidence 112 6778888887 5555542 357999999988774444333 788999999
Q ss_pred CCCCEEEEEeCCC---------eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 439 VDDNYFISGSIDG---------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 439 ~d~~~l~sgs~Dg---------~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
++ +++++..++ .|.++| +++...+..+ ..+..+ +|||+.|+..+.+
T Consensus 181 -dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 181 -DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp -TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred -Ce-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEEcc
Confidence 88 877776542 455555 6666555444 555554 9999988877643
No 188
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.08 E-value=1.4e-08 Score=101.37 Aligned_cols=221 Identities=11% Similarity=-0.030 Sum_probs=122.9
Q ss_pred cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC----------CCcEEEEecCCCeeeeeeec
Q 011126 255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----------DGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 255 ~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------Dg~V~iWdl~~~~~~~~~~~ 324 (493)
.|+.|.+||..+.+. ...+..+..+ .++|+|||++|+++.. +++|.+||+.+.+.+..+..
T Consensus 29 ~d~~v~v~D~~t~~~-------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 29 TESRVHVYDYTNGKF-------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp GGCEEEEEETTTCCE-------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred ccCeEEEEECCCCeE-------EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 478999999765432 1245555555 8999999999998863 67899999999988888765
Q ss_pred cC------CCCceEEEeeCCCC----------ceeeeeccCccccce-e-----------------eeecCCCceEEEcC
Q 011126 325 QD------TDPSCLYFTINHLS----------QLIPIDVDKEKIDKT-K-----------------SLRKSSDLTCVVLP 370 (493)
Q Consensus 325 ~~------~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~-----------------~~~~s~~~~~~~~~ 370 (493)
.. ..+..+.+.+++.. .+..++....+.... . .+..+.++.+..+.
T Consensus 100 ~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 100 PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 42 23444555444321 222222222111110 0 00111111111111
Q ss_pred CCceeecccce------EEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE--EEEecC-------C----Cc
Q 011126 371 PKVFRLLEKPL------HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC--LRVFSH-------N----NY 430 (493)
Q Consensus 371 ~~~~~~~~~~~------~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~--~~~~~h-------~----~~ 430 (493)
... ..+.. ..+..+..++ .+.+++++ .++..+.++.|.++|+..... +..+.. . ..
T Consensus 180 ~~~---~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 180 LGE---DGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp ECT---TSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred ECC---CCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence 100 00000 0011111111 22234555 555566788899999865432 222210 0 11
Q ss_pred EEEEEEccCCCCEEEEEeC-----------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 431 VTSVAFNPVDDNYFISGSI-----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 431 V~~v~fsp~d~~~l~sgs~-----------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
...++|+| +++.++++.. .++|.+||+.+++++....... +.+++|+|||++|++++.
T Consensus 256 ~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 256 YNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp SSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS
T ss_pred eeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC
Confidence 11278999 7776665543 3589999999999886443334 999999999999987753
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.07 E-value=1e-08 Score=100.76 Aligned_cols=181 Identities=7% Similarity=-0.050 Sum_probs=126.6
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
+.+. ++.+.++...++.|.+||..+.+.. .++. .......|+++++++.+++...++.|.+||..+++...
T Consensus 49 i~~~-~~~lyv~~~~~~~v~viD~~t~~~~-------~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 49 MVIR-DGIGWIVVNNSHVIFAIDINTFKEV-------GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTTCCEE-------EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred EEEE-CCEEEEEEcCCCEEEEEECcccEEE-------EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence 4453 4556666667899999998754421 2232 34668899999998544444489999999998887654
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 400 (493)
.+..... .++......|++ .++
T Consensus 120 ~i~~g~~---------------------------------------------------------~~~~~~p~~i~~-~~~ 141 (328)
T 3dsm_A 120 YIECPDM---------------------------------------------------------DMESGSTEQMVQ-YGK 141 (328)
T ss_dssp EEECTTC---------------------------------------------------------CTTTCBCCCEEE-ETT
T ss_pred EEEcCCc---------------------------------------------------------cccCCCcceEEE-ECC
Confidence 4432210 011123345566 445
Q ss_pred e-EEEEe-CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC----------CeEEEEeCCCCeEEEecC
Q 011126 401 F-LLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID----------GKVRIWEVRRCQVVDYTD 468 (493)
Q Consensus 401 ~-l~sgs-~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D----------g~V~IWdl~~~~~~~~~~ 468 (493)
. +++.. .+++|.+||+.+++.+..+........+.++| ++++++++..+ +.|.+||..++++.....
T Consensus 142 ~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp EEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 4 44443 48999999999999988887666678899999 89888777655 799999999998875332
Q ss_pred C--CCCeEEEEEccCCCEEEEee
Q 011126 469 I--REIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 469 ~--~~~I~sv~~spdG~~l~s~s 489 (493)
. ...+..++|+|||+.|+++.
T Consensus 221 ~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 221 FKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp CCTTCCCEEEEECTTSCEEEEES
T ss_pred cCCCCCceeEEEecCCCEEEEEc
Confidence 2 34689999999999887754
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.06 E-value=1.4e-07 Score=89.99 Aligned_cols=223 Identities=6% Similarity=0.035 Sum_probs=141.1
Q ss_pred cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~ 315 (493)
..+.+++++++|.++++...++.|.+|+.. .. +... .+..+...+..|+++++|.++++...++.|..|+..
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GK--ITEY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CC--eEEe----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 345568899999988877678999999876 22 1111 112245679999999999988877778889999975
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 395 (493)
++ ...+..+........+.......++.. ......+..++... ... ......+...+..++
T Consensus 87 g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~--------------~~~~~~i~~~d~~g-~~~---~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 87 GI-IKEYTLPNPDSAPYGITEGPNGDIWFT--------------EMNGNRIGRITDDG-KIR---EYELPNKGSYPSFIT 147 (299)
T ss_dssp SC-EEEEECSSTTCCEEEEEECTTSCEEEE--------------ETTTTEEEEECTTC-CEE---EEECSSTTCCEEEEE
T ss_pred Cc-EEEEeCCCcCCCceeeEECCCCCEEEE--------------ecCCceEEEECCCC-CEE---EecCCCCCCCCceEE
Confidence 33 222322111111111222222222221 11233344444311 100 111123456789999
Q ss_pred EeCCC-eEEEEeCCCeEEEEECCCCcEEEE-ec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCC
Q 011126 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIR 470 (493)
Q Consensus 396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~ 470 (493)
+.++| ++++...++.|..||. +++.... .. ....+.++++.| +++++++...++.|.+||. +++...+ ....
T Consensus 148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 224 (299)
T 2z2n_A 148 LGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTPN 224 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred EcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCCC
Confidence 99998 6666666789999998 6655443 22 456788999999 8888887777899999999 7765543 3345
Q ss_pred CCeEEEEEccCCCEEEEe
Q 011126 471 EIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 471 ~~I~sv~~spdG~~l~s~ 488 (493)
..+.+++++|+|+++++.
T Consensus 225 ~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 225 ARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp CCEEEEEECSTTCEEEEE
T ss_pred CCceeEEECCCCCEEEec
Confidence 679999999999976664
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.06 E-value=1.3e-07 Score=94.80 Aligned_cols=226 Identities=8% Similarity=-0.042 Sum_probs=130.5
Q ss_pred cceeccCCCeEEeee----------cCCeEEEEECCCccccccccccc--eeeecccCCEEEEEEccCCCEEEEEEC--C
Q 011126 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D 305 (493)
Q Consensus 240 ~~~fsp~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~Lasgs~--D 305 (493)
.++++|+|++++++. .++.|.+||..+.... ..+... .... +...-..+.|+|||++|+.+.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~-~~i~~~~~~~~~-~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI-ADIELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE-EEEECCCccccc-cCCCccceEECCCCCEEEEEecCCC
Confidence 489999999998875 3678999998743321 111000 0000 1123458999999999998874 4
Q ss_pred CcEEEEecCCCeeeee-eeccCC-----CCceEEEeeCCCCceeeeeccCcccccee-----------------------
Q 011126 306 GTVRVWKVIEHERLDG-FDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTK----------------------- 356 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 356 (493)
+.|.++| .+++.+.. +..... .....++.......+..++. ..+.....
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence 7899999 99988777 654321 00001111112222333322 11111000
Q ss_pred -eeecCCCceEEEcCCCceeecccceEEEec----------CCCCEeEEEEeCCC-eEEEEeC----------CCeEEEE
Q 011126 357 -SLRKSSDLTCVVLPPKVFRLLEKPLHEFQG----------HSSEVLDLSWSKNG-FLLSSSA----------DKTVRLW 414 (493)
Q Consensus 357 -~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~~V~~l~~sp~g-~l~sgs~----------Dg~V~lW 414 (493)
.+.....+.+.+++...... +.+..+.- .......++++|++ .++.+.. .+.|.++
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~--~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGA--TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred EEEEEcCCceEEEEeccCCcc--eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 00000111222222211000 00111110 11224447889987 5444432 3689999
Q ss_pred ECCCCcEEEEecCCCcEEEEEEccCCCC-EEEEEe-CCCeEEEEeCCCCeEEEe-cCCCCC
Q 011126 415 QVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVRIWEVRRCQVVDY-TDIREI 472 (493)
Q Consensus 415 d~~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs-~Dg~V~IWdl~~~~~~~~-~~~~~~ 472 (493)
|+.+++.+..+.......++.|+| +++ +++++. .++.|.+||+.+++++.. ......
T Consensus 304 D~~t~~vv~~i~~g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~ 363 (373)
T 2mad_H 304 TGLVGQTSSQISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSG 363 (373)
T ss_pred ECCCCEEEEEEECCCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCC
Confidence 999999999998777899999999 888 777777 589999999999998865 443333
No 192
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.04 E-value=1.4e-07 Score=92.43 Aligned_cols=223 Identities=8% Similarity=0.008 Sum_probs=133.3
Q ss_pred cceeccC-CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126 240 SATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 240 ~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
...|+|+ +.++++....+.|.+|+....... .+ .+...|.++.|+|+|+++++. .+ .|.+||..+++.
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--------~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKT--------VH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--------EE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--------EE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE
Confidence 3678997 456667777899999998754321 11 134579999999999877754 44 499999987765
Q ss_pred eeeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 319 LDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 319 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
.......... .....+.......++........ ......++.++ . ..+..+..+......++|
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~--------~~~~~~l~~~~-~------g~~~~~~~~~~~~~~i~~ 186 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA--------ETGAGSIYHVA-K------GKVTKLFADISIPNSICF 186 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--------CTTCEEEEEEE-T------TEEEEEEEEESSEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC--------CCCceEEEEEe-C------CcEEEeeCCCcccCCeEE
Confidence 3322211111 01111222222223222111000 00112233332 1 011112223345678999
Q ss_pred eCCC-eE-EEEeCCCeEEEEECC--CC-c-----EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 011126 397 SKNG-FL-LSSSADKTVRLWQVG--ID-R-----CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (493)
Q Consensus 397 sp~g-~l-~sgs~Dg~V~lWd~~--~~-~-----~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~- 464 (493)
+|++ .| ++.+.++.|.+||+. ++ . .+..+. ....+..+++.+ +++++++...++.|.+||. +++.+
T Consensus 187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~~~ 264 (326)
T 2ghs_A 187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIA 264 (326)
T ss_dssp CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEE
T ss_pred cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCEEE
Confidence 9998 44 555667899999986 55 2 122222 345678999999 8988888777889999999 45554
Q ss_pred EecCCCCCeEEEEEc-cCCCEEEEeec
Q 011126 465 DYTDIREIVSAVCYC-PDGKVRQNSAC 490 (493)
Q Consensus 465 ~~~~~~~~I~sv~~s-pdG~~l~s~s~ 490 (493)
.+......+++++|. |+++.|++++.
T Consensus 265 ~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 265 RYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEECCCCCcEEEEEecCCCCEEEEEec
Confidence 444455579999998 99887766554
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.04 E-value=1.3e-08 Score=110.74 Aligned_cols=207 Identities=11% Similarity=0.043 Sum_probs=120.3
Q ss_pred cccCCEEEEEEccCCCEEEEEECCC-----cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126 282 AHEGSILTMKFSLDGQYLASGGEDG-----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (493)
Q Consensus 282 ~H~~~I~~l~fspdg~~Lasgs~Dg-----~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (493)
+|...+..++|||||++||.+..++ .|++||+.+++........ .....+.|++++...++.............
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3555789999999999998776543 8999999999876532221 124456666655433332211110000000
Q ss_pred eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeC-----CCeEEEEECCC------C--cEE
Q 011126 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGI------D--RCL 422 (493)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~-----Dg~V~lWd~~~------~--~~~ 422 (493)
.........+.+|+..........+.....|...+..+.|+|+| +|+..+. +..|.+||+.+ + ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 00001122344444432211111122222355668899999999 6665543 67899999986 4 233
Q ss_pred EEecCCCcEEEEEEccCCCCEEEEEeCC----CeEEEEeCCCCe---EEEecCCCC--CeEEEEEccCCCEEEEeecC
Q 011126 423 RVFSHNNYVTSVAFNPVDDNYFISGSID----GKVRIWEVRRCQ---VVDYTDIRE--IVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 423 ~~~~h~~~V~~v~fsp~d~~~l~sgs~D----g~V~IWdl~~~~---~~~~~~~~~--~I~sv~~spdG~~l~s~s~d 491 (493)
....+...+.. .|+| +++.|+..+.. +.|.+||+.++. ...+..+.. .+..++|++++.++++...+
T Consensus 281 ~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred EeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 33345555554 4888 78877766553 369999998764 233444433 68889999777777766544
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.03 E-value=2e-09 Score=117.04 Aligned_cols=181 Identities=12% Similarity=0.036 Sum_probs=118.4
Q ss_pred eeccCCCeEEeeecCC---eEEEE--ECCCcccccccccc-ceeeecccCCEEEEEEccCCCEEE-----EEECCCcEEE
Q 011126 242 TLKPGDHELTLGQRMR---RVRVH--PVKKQSRELSSLYT-GQEFLAHEGSILTMKFSLDGQYLA-----SGGEDGTVRV 310 (493)
Q Consensus 242 ~fsp~g~~lasgs~dg---~V~vw--d~~~~~~~~~~~~~-~~~l~~H~~~I~~l~fspdg~~La-----sgs~Dg~V~i 310 (493)
...|+|.+++....++ .-.|| +....... .+.- ...-.+|...+..++|||||++|| .|+.+.+|++
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEK--VLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCE--EEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcE--EEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence 3458898888766543 34444 43222111 1100 001135666799999999999998 4445578999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
||+.+++.+... .+.. ..
T Consensus 152 ~dl~tg~~~~~~------------------------------------------------------------~~~~--~~ 169 (695)
T 2bkl_A 152 IDVDSGEWSKVD------------------------------------------------------------VIEG--GK 169 (695)
T ss_dssp EETTTCCBCSSC------------------------------------------------------------CBSC--CT
T ss_pred EECCCCCCcCCc------------------------------------------------------------ccCc--cc
Confidence 999887632000 0000 11
Q ss_pred EeEEEEeCCC-eEEEEeCCCe-------------EEEEECCCCcE--EEEec---CCCcEEEEEEccCCCCEEEEEeCCC
Q 011126 391 VLDLSWSKNG-FLLSSSADKT-------------VRLWQVGIDRC--LRVFS---HNNYVTSVAFNPVDDNYFISGSIDG 451 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~Dg~-------------V~lWd~~~~~~--~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg 451 (493)
...++|+|+| .|+.++.|.. |++|++.++.. ...+. +...+..+.|+| ++++|+.++.++
T Consensus 170 ~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~ 248 (695)
T 2bkl_A 170 YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRG 248 (695)
T ss_dssp TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEET
T ss_pred ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCC
Confidence 1468999999 8888888776 99999998762 22332 456889999999 999998887766
Q ss_pred ----eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 452 ----KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 452 ----~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.|++|+..+++...+..+...+....+ |+|+ ++..+
T Consensus 249 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s 288 (695)
T 2bkl_A 249 WSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLT 288 (695)
T ss_dssp TTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred CCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEE
Confidence 788888777776666656666666666 6777 55443
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.01 E-value=3.7e-07 Score=87.09 Aligned_cols=221 Identities=5% Similarity=0.013 Sum_probs=138.5
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
+..++++++|.++++...++.|..|+.......+ .+..+...+..|.+.++|.++++...++.|.+||. +++
T Consensus 59 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~-------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 59 VMCLTISSDGEVWFTENAANKIGRITKKGIIKEY-------TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTSCEEEE-------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred eeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEE-------eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 3458889999988887778899999875221111 11224557899999999988887777889999998 554
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (493)
.. .+...........+.......++.. ......+..++. ...+. ......+...+..+++.
T Consensus 131 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~--------------~~~~~~i~~~~~-~g~~~---~~~~~~~~~~~~~i~~~ 191 (299)
T 2z2n_A 131 IR-EYELPNKGSYPSFITLGSDNALWFT--------------ENQNNAIGRITE-SGDIT---EFKIPTPASGPVGITKG 191 (299)
T ss_dssp EE-EEECSSTTCCEEEEEECTTSCEEEE--------------ETTTTEEEEECT-TCCEE---EEECSSTTCCEEEEEEC
T ss_pred EE-EecCCCCCCCCceEEEcCCCCEEEE--------------eCCCCEEEEEcC-CCcEE---EeeCCCCCCcceeEEEC
Confidence 32 2221111111111222222222221 122233444443 11110 01122345568899999
Q ss_pred CCC-eEEEEeCCCeEEEEECCCCcEEEE-ec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCC
Q 011126 398 KNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREI 472 (493)
Q Consensus 398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~ 472 (493)
++| ++++...++.|.+||. ++..... .. +...+.++++.| +++++++...++.|.+||. ++++..+ ......
T Consensus 192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~ 268 (299)
T 2z2n_A 192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAE 268 (299)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCC
T ss_pred CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCc
Confidence 998 6666666889999999 6654332 12 457799999999 8887777767899999999 5665543 344567
Q ss_pred eEEEEEccCCCEEEEee
Q 011126 473 VSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 473 I~sv~~spdG~~l~s~s 489 (493)
+.++++ ++|++.++..
T Consensus 269 ~~~i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 269 PHGICF-DGETIWFAME 284 (299)
T ss_dssp EEEEEE-CSSCEEEEET
T ss_pred cceEEe-cCCCEEEEec
Confidence 999999 9998877654
No 196
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.00 E-value=6.9e-08 Score=97.99 Aligned_cols=221 Identities=14% Similarity=0.059 Sum_probs=138.0
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC--cEEEEecC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVI 314 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~V~iWdl~ 314 (493)
....++|+++++++++...++.|++|+....... .+ ... ..... ++|+|++++|+++..++ .|.+|+..
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~--~~-----~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT--TV-----HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE--EE-----EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE--Ee-----ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 4445899999998888888899999998754321 11 111 22233 89999999999988866 78888876
Q ss_pred CCeeeeee----eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-----e
Q 011126 315 EHERLDGF----DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-----Q 385 (493)
Q Consensus 315 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~ 385 (493)
.+.....+ ......+..+.+.+.. ..++.. .....+..++..... ...+ .
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~-g~lyv~---------------d~~~~I~~~d~~~~~-----~~~~~~~~~~ 261 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETE-EWLYFV---------------DSNKNFGRFNVKTQE-----VTLIKQLELS 261 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTS-SEEEEE---------------CTTCEEEEEETTTCC-----EEEEEECCCC
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCC-CeEEEE---------------ECCCcEEEEECCCCC-----EEEEeccccc
Confidence 65443333 1022233333333211 111111 112233333332111 1111 1
Q ss_pred cCCCCE--eEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEecC---------------CCcEEEEEEccCCCCEEEE
Q 011126 386 GHSSEV--LDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFSH---------------NNYVTSVAFNPVDDNYFIS 446 (493)
Q Consensus 386 ~h~~~V--~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h---------------~~~V~~v~fsp~d~~~l~s 446 (493)
++...- ..|+|+|+ + ++++-...+.|+.|+.... ......+ -.....|+|+| +++++++
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyva 339 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIV 339 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEE
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEE
Confidence 122222 39999995 5 6667778899999997644 3222222 24588999999 8998888
Q ss_pred Ee-CCCeEEEEeCCCCeEEEecCC---------------CCCeEEEEEccCCCEEEEee
Q 011126 447 GS-IDGKVRIWEVRRCQVVDYTDI---------------REIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 447 gs-~Dg~V~IWdl~~~~~~~~~~~---------------~~~I~sv~~spdG~~l~s~s 489 (493)
-. .+++|+.|++.++++..+.++ -.....|+++|+|.++++-.
T Consensus 340 d~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~ 398 (409)
T 3hrp_A 340 DGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA 398 (409)
T ss_dssp ETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred eCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence 88 899999999888887755443 24689999999987766544
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.98 E-value=2.4e-08 Score=99.76 Aligned_cols=231 Identities=11% Similarity=0.025 Sum_probs=139.8
Q ss_pred ceeccCCCeEEeee----------cCCeEEEEECCCccccccccccceeeecc-------cCCEEEEEEccCCCEEEEEE
Q 011126 241 ATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASGG 303 (493)
Q Consensus 241 ~~fsp~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~Lasgs 303 (493)
++++|+|++++++. .++.|.+||..+....- ++.-. ...-..+.|+|||++|+.+.
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~-------~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan 155 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA-------DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 155 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE-------EEEETTCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEE-------EEECCCccccccCCCCceEEEcCCCCEEEEEE
Confidence 89999999887765 36789999987654211 12110 11345689999999998886
Q ss_pred C--CCcEEEEecCCCeeeeeeeccCCC-----CceEEEeeCCCCceeeeeccC-ccccce--------------------
Q 011126 304 E--DGTVRVWKVIEHERLDGFDVQDTD-----PSCLYFTINHLSQLIPIDVDK-EKIDKT-------------------- 355 (493)
Q Consensus 304 ~--Dg~V~iWdl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------------- 355 (493)
. ++.|.++|+.+++.+.++...... ....++.....+.++.+.... +++...
T Consensus 156 ~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~ 235 (386)
T 3sjl_D 156 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ 235 (386)
T ss_dssp CSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred cCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc
Confidence 4 689999999999998888653210 000011112222333333322 121000
Q ss_pred ---eeeecCCCceEEEcCCCceeecccceEEEe---------c-CCCCEeEEEEeCCC-eEEEEeC----------CCeE
Q 011126 356 ---KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---------G-HSSEVLDLSWSKNG-FLLSSSA----------DKTV 411 (493)
Q Consensus 356 ---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---------~-h~~~V~~l~~sp~g-~l~sgs~----------Dg~V 411 (493)
..+..+..+.+.+.+...... +.+..+. + .......+++++++ .++.... .+.|
T Consensus 236 ~dG~~~~vs~~g~V~v~d~~~~~~--~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V 313 (386)
T 3sjl_D 236 KAGRLVWPTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 313 (386)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred CCCcEEEEeCCCEEEEEECCCCcc--eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence 000011112222222211000 0011110 0 11233357778887 4444321 2579
Q ss_pred EEEECCCCcEEEEecCCCcEEEEEEccCCCC-EEEEE-eCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccC
Q 011126 412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISG-SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481 (493)
Q Consensus 412 ~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sg-s~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spd 481 (493)
.+.|+.+++.++.+.-...+..|+|+| +++ +|++. ..++.|.++|..+++++.........+.+.+++|
T Consensus 314 ~viD~~t~kv~~~i~vg~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 314 VVLDAKTGERLAKFEMGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEETTTCCEEEEEEEEEEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEECCCCeEEEEEECCCCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 999999999999998777899999999 876 66654 4589999999999999977666677777888887
No 198
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.98 E-value=3.9e-08 Score=94.60 Aligned_cols=189 Identities=11% Similarity=0.017 Sum_probs=118.4
Q ss_pred eeecccCCEEEEEEccCCC-EEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceee
Q 011126 279 EFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (493)
Q Consensus 279 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (493)
.+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+..+.+.+++ .++..
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg--~l~v~------------ 85 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG--HLIAC------------ 85 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC--CEEEE------------
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC--cEEEE------------
Confidence 4445666788999999998 7788888999999999877 44454443333344433322 22222
Q ss_pred eecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEEEeCCC-eEEE----Ee-------------CCCeEEEEECCC
Q 011126 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNG-FLLS----SS-------------ADKTVRLWQVGI 418 (493)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g-~l~s----gs-------------~Dg~V~lWd~~~ 418 (493)
......+..|+........ ......+ ....+.+++++|+| ++++ ++ ..+.|..++..
T Consensus 86 --~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 86 --SHGLRRLERQREPGGEWES-IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp --ETTTTEEEEECSTTCCEEE-EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred --ecCCCeEEEEcCCCCcEEE-EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 1222345555542221100 0001111 12356789999999 6665 32 12456566655
Q ss_pred CcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeE---E-EecCCCCCeEEEEEccCCCEEEEe
Q 011126 419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQV---V-DYTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 419 ~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~---~-~~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
++......+....+.++|+| ++++|++.+.++.|++|++. ++++ . .+..+...+..++++++|+++++.
T Consensus 162 g~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 162 GTLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp SCEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred CCEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 55544455777889999999 99988888888999999997 5555 1 123344567789999999977665
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.96 E-value=9.6e-08 Score=100.91 Aligned_cols=177 Identities=10% Similarity=0.029 Sum_probs=127.3
Q ss_pred eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC--CCeeee
Q 011126 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLD 320 (493)
Q Consensus 243 fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~--~~~~~~ 320 (493)
..|.+.++++...+++|.++|..+.... .++. ....+..+.|+|||++|++++.|+.|.+||+. +++.+.
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~-------~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIK-------TVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEE-------EEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEE-------EEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence 4455667778888999999998755421 1222 22356789999999999999999999999985 544332
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe---
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS--- 397 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 397 (493)
.+. . ......++|+
T Consensus 235 ~i~--------------------------------------------------------------~-G~~P~~ia~s~~~ 251 (567)
T 1qks_A 235 EIK--------------------------------------------------------------I-GSEARSIETSKME 251 (567)
T ss_dssp EEE--------------------------------------------------------------C-CSEEEEEEECCST
T ss_pred EEe--------------------------------------------------------------c-CCCCceeEEcccc
Confidence 221 1 1234689999
Q ss_pred -CCC-eEE-EEeCCCeEEEEECCCCcEEEEecC------------CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 398 -KNG-FLL-SSSADKTVRLWQVGIDRCLRVFSH------------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 398 -p~g-~l~-sgs~Dg~V~lWd~~~~~~~~~~~h------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
|+| +++ +...+++|.|+|..+.+.++.+.. ...+..+.+++....++++...+|+|.++|..+.+
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence 688 554 555679999999999999887752 12678899998445566666678999999998764
Q ss_pred EE--EecCCCCCeEEEEEccCCCEEEEeec
Q 011126 463 VV--DYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 463 ~~--~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.+ ...........+.|+|||+++++++.
T Consensus 332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~ 361 (567)
T 1qks_A 332 NLKTTEISAERFLHDGGLDGSHRYFITAAN 361 (567)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred cceeeeeeccccccCceECCCCCEEEEEeC
Confidence 32 23334456788999999999987763
No 200
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.96 E-value=9.1e-09 Score=103.07 Aligned_cols=131 Identities=8% Similarity=0.013 Sum_probs=104.6
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
+..++| ++.+|+++ .++.|++|++.... .......|...|.++.+.+. .++++..||.|.+||+.++.
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~-------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~ 157 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELS-------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS 157 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTT-------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhh-------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence 667889 99999999 88999999987543 22245667888999888765 38889999999999997654
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (493)
... +...|++++|+
T Consensus 158 ~~~------------------------------------------------------------------~~~~Vs~v~WS 171 (388)
T 1xip_A 158 TKQ------------------------------------------------------------------LAQNVTSFDVT 171 (388)
T ss_dssp EEE------------------------------------------------------------------EEESEEEEEEC
T ss_pred ccc------------------------------------------------------------------ccCCceEEEEc
Confidence 210 23478999999
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcE--EEEe------c----CCCcEEEEEEccCCCCEEEEEe
Q 011126 398 KNGFLLSSSADKTVRLWQVGIDRC--LRVF------S----HNNYVTSVAFNPVDDNYFISGS 448 (493)
Q Consensus 398 p~g~l~sgs~Dg~V~lWd~~~~~~--~~~~------~----h~~~V~~v~fsp~d~~~l~sgs 448 (493)
|+| ++.|..||+|++|+...+.+ .+++ . |...|.+|+|.+ ++.+|++=.
T Consensus 172 pkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y~ 232 (388)
T 1xip_A 172 NSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVFG 232 (388)
T ss_dssp SSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEEE
T ss_pred CCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEEc
Confidence 999 77899999999999888776 6666 2 678999999999 888888743
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.93 E-value=1.2e-07 Score=89.51 Aligned_cols=196 Identities=9% Similarity=0.001 Sum_probs=124.6
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
...++++++|.++++.. ++.|.+|+........ . .......+..|+++++|+++++...++.|.+|+..+..
T Consensus 69 p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~--~-----~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 69 PQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV--L-----PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT 140 (270)
T ss_dssp CCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE--C-----CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS
T ss_pred cceeEECCCCCEEEEcC-CCEEEEEeCCCceEee--e-----ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce
Confidence 44588999999766665 8899999976543211 0 01233568999999999987777778899999765543
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (493)
...........+..+.+.+++ .++... .....+..++...... ......+...+..|++.
T Consensus 141 ~~~~~~~~~~~p~~i~~~~~g--~l~v~~--------------~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~d 200 (270)
T 1rwi_B 141 QTVLPFTGLNDPDGVAVDNSG--NVYVTD--------------TDNNRVVKLEAESNNQ----VVLPFTDITAPWGIAVD 200 (270)
T ss_dssp CEECCCCSCCSCCCEEECTTC--CEEEEE--------------GGGTEEEEECTTTCCE----EECCCSSCCSEEEEEEC
T ss_pred eEeeccccCCCceeEEEeCCC--CEEEEE--------------CCCCEEEEEecCCCce----EeecccCCCCceEEEEC
Confidence 322211111233344443322 222221 1223444444432211 11112233678899999
Q ss_pred CCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
++| ++++...++.|.+|+.......... .+...+.+++++| +++++++...+++|+++++...+
T Consensus 201 ~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 201 EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 998 6666667889999998765543322 2346789999999 89999999999999999987654
No 202
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.93 E-value=2.3e-07 Score=97.97 Aligned_cols=224 Identities=9% Similarity=0.045 Sum_probs=137.2
Q ss_pred cceeccCCCeEEeeecCCeEEEEECC--CccccccccccceeeecccCCEEEEEEc----cCCCEEEEEEC-CCcEEEEe
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVK--KQSRELSSLYTGQEFLAHEGSILTMKFS----LDGQYLASGGE-DGTVRVWK 312 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~--~~~~~~~~~~~~~~l~~H~~~I~~l~fs----pdg~~Lasgs~-Dg~V~iWd 312 (493)
.+.|+|+|+++++++.++.|.+||+. +... ..++.... ....++|+ |||++|+++.+ +++|.|+|
T Consensus 201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-------v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD 272 (567)
T 1qks_A 201 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-------VAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMD 272 (567)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSSCCE-------EEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred ceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-------eEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence 58999999999999999999999985 2221 12333322 35789999 69998887765 58999999
Q ss_pred cCCCeeeeeeeccCCC---------CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126 313 VIEHERLDGFDVQDTD---------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (493)
Q Consensus 313 l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (493)
..+.+.+..+...... +....+...+....+. +.....+.+.+++...... ..+..
T Consensus 273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v-------------v~~~~~g~v~~vd~~~~~~--~~v~~ 337 (567)
T 1qks_A 273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI-------------VNVKETGKILLVDYTDLNN--LKTTE 337 (567)
T ss_dssp TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE-------------EEETTTTEEEEEETTCSSE--EEEEE
T ss_pred CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE-------------EEecCCCeEEEEecCCCcc--ceeee
Confidence 9999888877643211 1111111111111111 1112233333333221100 00111
Q ss_pred EecCCCCEeEEEEeCCC-eE-EEEeCCCeEEEEECCCCcEEEEec------CCCcEEEEEEccCC-CCEEEEEe-CCCeE
Q 011126 384 FQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVD-DNYFISGS-IDGKV 453 (493)
Q Consensus 384 ~~~h~~~V~~l~~sp~g-~l-~sgs~Dg~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d-~~~l~sgs-~Dg~V 453 (493)
+ .......++.|+|+| ++ +++..+++|.++|+.+++.+..+. |.+.-..+ ++| + +.+++++. .+++|
T Consensus 338 i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p-~~g~v~~t~~~g~~~V 414 (567)
T 1qks_A 338 I-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHP-TFGPVWATSHMGDDSV 414 (567)
T ss_dssp E-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EET-TTEEEEEEEBSSSSEE
T ss_pred e-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECC-CCCcEEEeCCCCCCeE
Confidence 2 233456788999999 55 455578999999999998876664 32211122 578 5 45555554 46899
Q ss_pred EEEeCCC-------CeEEEe-cCCCCCeEEEEEccCCCEEEEee
Q 011126 454 RIWEVRR-------CQVVDY-TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 454 ~IWdl~~-------~~~~~~-~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.++|... .+++.. ......-..|..+|++++|.+..
T Consensus 415 svid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 415 ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred EEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence 9999987 556643 32223334577899999988765
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.91 E-value=1.4e-06 Score=83.01 Aligned_cols=220 Identities=5% Similarity=0.006 Sum_probs=139.8
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
...++++.++|.+.++...++.|.+|+.. ... ... .+..+...+..|.+.++|.++++...++.|..||.. +
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~--~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRI--KEF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--EEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-Cce--EEE----ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 44458899999988887788999999876 221 111 112344679999999999987777667889999987 5
Q ss_pred eeeeeeeccC--CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE
Q 011126 317 ERLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (493)
Q Consensus 317 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 394 (493)
+. ..+.... ..+..+.+ .....++.. ......+..++.. .... ...+......+..+
T Consensus 93 ~~-~~~~~~~~~~~~~~i~~--~~~g~l~v~--------------~~~~~~i~~~~~~-g~~~---~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 93 GF-TEYPLPQPDSGPYGITE--GLNGDIWFT--------------QLNGDRIGKLTAD-GTIY---EYDLPNKGSYPAFI 151 (300)
T ss_dssp CE-EEEECSSTTCCEEEEEE--CSTTCEEEE--------------ETTTTEEEEECTT-SCEE---EEECSSTTCCEEEE
T ss_pred Ce-EEecCCCCCCCCccceE--CCCCCEEEE--------------ccCCCeEEEECCC-CCEE---EccCCCCCCCceeE
Confidence 43 2332221 11222222 222222222 1122334444433 1110 01122245678999
Q ss_pred EEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCC
Q 011126 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDI 469 (493)
Q Consensus 395 ~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~ 469 (493)
++.++| ++++...++.|..||. +++..... .+...+.++++.+ +++++++....+.|.+||. +++...+ ...
T Consensus 152 ~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~ 228 (300)
T 2qc5_A 152 TLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTP 228 (300)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred EECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCC
Confidence 999998 6666666789999998 55544322 1446789999999 8888887777889999999 5555433 334
Q ss_pred CCCeEEEEEccCCCEEEEe
Q 011126 470 REIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 470 ~~~I~sv~~spdG~~l~s~ 488 (493)
...+.++++.++|++.++.
T Consensus 229 ~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 229 NARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp TCCEEEEEECSTTCEEEEE
T ss_pred CCCceEEEECCCCCEEEec
Confidence 5678999999999866655
No 204
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.91 E-value=1.2e-07 Score=93.54 Aligned_cols=237 Identities=11% Similarity=0.111 Sum_probs=134.2
Q ss_pred ccccceeccCCCeEEeee--cCCeEEEEECCCccccccccccc-eeeecccCCEEEEEEccCCCEEEEEEC-----CCcE
Q 011126 237 RHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSSLYTG-QEFLAHEGSILTMKFSLDGQYLASGGE-----DGTV 308 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs--~dg~V~vwd~~~~~~~~~~~~~~-~~l~~H~~~I~~l~fspdg~~Lasgs~-----Dg~V 308 (493)
....++++|+|+++++.. .++.++||.+.... +..+... .....|-..+..|+|+++|+++++-.. ++.|
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 445589999999988854 23435555543221 2111100 112346678999999999876665433 5789
Q ss_pred EEEecCCCeeeeeeeccCC------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc---ee----
Q 011126 309 RVWKVIEHERLDGFDVQDT------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV---FR---- 375 (493)
Q Consensus 309 ~iWdl~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~---- 375 (493)
.+||+.+++.+..+..+.. .+..+.+.+.. ..++..+.... ....+.+++... +.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~-----------~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPD-----------DKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSG-----------GGCEEEEEETTTCCEEEECTT
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCccC-----------CCCeEEEEECCCCCEEEEecC
Confidence 9999999987777665321 12333333221 12222221000 112222222110 00
Q ss_pred ------------ecccceEEEec------CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC-----c--------EEE
Q 011126 376 ------------LLEKPLHEFQG------HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-----R--------CLR 423 (493)
Q Consensus 376 ------------~~~~~~~~~~~------h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~-----~--------~~~ 423 (493)
...+.+..... ....+..|+|+|+| .|+.+..++. +||.+... . .+.
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceE
Confidence 00000000000 11346889999999 7777766653 44544211 0 012
Q ss_pred EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC--CCCCeEEEEEccCCCEEEEee
Q 011126 424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 424 ~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~--~~~~I~sv~~spdG~~l~s~s 489 (493)
.+.+......+++++ +++++++...++.|.+||..++++..... ....+++++|.|+|+++++.+
T Consensus 243 ~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 243 RYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred ecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 223344567799999 89999999999999999996666543322 245689999999998887765
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.90 E-value=1.2e-07 Score=91.80 Aligned_cols=230 Identities=9% Similarity=-0.021 Sum_probs=132.2
Q ss_pred cceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126 240 SATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 240 ~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~ 318 (493)
...|+|+|+ +++++..++.|..|+.... . ..+..+...+..+.++++|+++++...++.|.+|+.. ++.
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~~g~---~------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWREDGT---V------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETTSC---E------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeCCCC---E------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence 478999998 6677778899999987422 1 1234466779999999999976665556789999975 443
Q ss_pred eeeeeccC----CCCceEEEeeCCCCceeeeeccCcccc---ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 319 LDGFDVQD----TDPSCLYFTINHLSQLIPIDVDKEKID---KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 319 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
........ ..+..+.+.++ ..++..+....... ............+..++..... +..+. +....
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-----~~~~~-~~~~p 190 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-----LQRMA-DLDHP 190 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-----CEEEE-EESSE
T ss_pred EEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-----EEEEe-cCCCC
Confidence 22111110 11223333322 22322111000000 0000000112344555442211 11122 33456
Q ss_pred eEEEEeCCC-eEEEEeCC------CeEEEEECCCCcEE--EEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 392 LDLSWSKNG-FLLSSSAD------KTVRLWQVGIDRCL--RVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 392 ~~l~~sp~g-~l~sgs~D------g~V~lWd~~~~~~~--~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
..++|+|++ .|+.+... +.|.+|++..+... ..+. .......+++.+ ++++.++. .+ .|.+|+..
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~-~~-gv~~~~~~- 266 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSS-GT-GVCVFDSD- 266 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECC-SS-EEEEECTT-
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEec-CC-cEEEECCC-
Confidence 789999999 56666554 78999998765411 1221 234456789999 88865554 44 49999985
Q ss_pred CeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 461 CQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
++.+........+++++|.|+++.|.+++.+
T Consensus 267 g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 267 GQLLGHIPTPGTASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp SCEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred CCEEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence 4444322233368999999999988877654
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.86 E-value=9.4e-08 Score=104.56 Aligned_cols=242 Identities=12% Similarity=0.005 Sum_probs=126.1
Q ss_pred eccCCCeEEeeecCCe---EEEEECCCc---cccccccc-cceeeecccCCEEEEEEccCCCEEEEEECC-----CcEEE
Q 011126 243 LKPGDHELTLGQRMRR---VRVHPVKKQ---SRELSSLY-TGQEFLAHEGSILTMKFSLDGQYLASGGED-----GTVRV 310 (493)
Q Consensus 243 fsp~g~~lasgs~dg~---V~vwd~~~~---~~~~~~~~-~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----g~V~i 310 (493)
..|+|.+++....++. -.||..... ......+. ....-.+|...+..++|||||++||.+..+ ..|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 4589998887665433 455543311 11111100 000112344578899999999999887654 36999
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
||+.+++.+... ........+.|+++ ..++.......... ...........+..++..........+.....|...
T Consensus 194 ~dl~tg~~~~~~-~~~~~~~~~~wspD--~~l~~~~~~~~~~~-~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 194 VGVADGKPLADE-LKWVKFSGLAWLGN--DALLYSRFAEPKEG-QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp EETTTCCEEEEE-EEEEESCCCEESTT--SEEEEEECCCC---------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred EECCCCCCCCcc-CCCceeccEEEECC--CEEEEEEecCcccc-cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 999998865431 11111123445444 22222222111000 000000112234444432211111112222233346
Q ss_pred EeEEEEeCCC-eEEEEeCC-----CeEEEEECCCC--c-EEEEecCCCcEEEEEEccCCCCEEEEEeC----CCeEEEEe
Q 011126 391 VLDLSWSKNG-FLLSSSAD-----KTVRLWQVGID--R-CLRVFSHNNYVTSVAFNPVDDNYFISGSI----DGKVRIWE 457 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs~D-----g~V~lWd~~~~--~-~~~~~~h~~~V~~v~fsp~d~~~l~sgs~----Dg~V~IWd 457 (493)
+..+.|+|+| +|+..+.+ ..|++||+.++ . ......+...+.... .| +++.|+..+. ++.|.+||
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEe
Confidence 8899999999 66666543 48999999876 4 333334555555554 47 7888887775 35699999
Q ss_pred CCCC--eEEEe-cCCCCCeEEEEEccCCCEEEEeecC
Q 011126 458 VRRC--QVVDY-TDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 458 l~~~--~~~~~-~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
+.++ +...+ ..+...+..++|. ++.++++...+
T Consensus 348 ~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d 383 (741)
T 1yr2_A 348 LSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHD 383 (741)
T ss_dssp CSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEET
T ss_pred CCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEEC
Confidence 9874 44443 3444456677777 55555555433
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.85 E-value=1.6e-06 Score=82.59 Aligned_cols=221 Identities=6% Similarity=0.023 Sum_probs=136.8
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
+..+++.++|.+.++...++.|.+++.. .... .. .+......+..|++.++|+++++...++.|..|+.. ++
T Consensus 64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~--~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 64 VMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT--EY----PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EE----ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred ceeEEECCCCCEEEEecCCCeEEEECCC-CCeE--Ee----cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 3457888999888877778899999876 2211 11 112234678999999999988877668889999986 44
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (493)
.. .+...........+.......++... .....+..++... ... ......+...+..+++.
T Consensus 136 ~~-~~~~~~~~~~~~~i~~d~~g~l~v~~--------------~~~~~i~~~~~~g-~~~---~~~~~~~~~~~~~i~~d 196 (300)
T 2qc5_A 136 IY-EYDLPNKGSYPAFITLGSDNALWFTE--------------NQNNSIGRITNTG-KLE---EYPLPTNAAAPVGITSG 196 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECTTSSEEEEE--------------TTTTEEEEECTTC-CEE---EEECSSTTCCEEEEEEC
T ss_pred EE-EccCCCCCCCceeEEECCCCCEEEEe--------------cCCCeEEEECCCC-cEE---EeeCCCCCCCcceEEEC
Confidence 33 22222111111222222222222221 1222334443311 100 01112345678899999
Q ss_pred CCC-eEEEEeCCCeEEEEECCCCcEEEE-ec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCC
Q 011126 398 KNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREI 472 (493)
Q Consensus 398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~ 472 (493)
++| ++++....+.|.+||. ++..... +. +...+.++++.| +++++++...++.|.+||. ++++..+ ......
T Consensus 197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 273 (300)
T 2qc5_A 197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAE 273 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCC
T ss_pred CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCc
Confidence 998 5555556778999998 4544433 22 456789999999 8888777767899999998 5555533 334456
Q ss_pred eEEEEEccCCCEEEEe
Q 011126 473 VSAVCYCPDGKVRQNS 488 (493)
Q Consensus 473 I~sv~~spdG~~l~s~ 488 (493)
+.++++.++|++.++.
T Consensus 274 ~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 274 PHGITFGKDGSVWFAL 289 (300)
T ss_dssp CCCEEECTTSCEEEEC
T ss_pred cceeEeCCCCCEEEEc
Confidence 8999999999977665
No 208
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.84 E-value=1.7e-07 Score=92.02 Aligned_cols=180 Identities=10% Similarity=0.051 Sum_probs=118.1
Q ss_pred ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE--CCCcEEEEecCCC
Q 011126 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG--EDGTVRVWKVIEH 316 (493)
Q Consensus 239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs--~Dg~V~iWdl~~~ 316 (493)
..+++++++.+.++...++.|.+||..+..... .+.... ..++......|++ . +..|+.+. .++.|.+||+.++
T Consensus 87 ~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~-~i~~g~-~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG-YIECPD-MDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE-EEECTT-CCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTT
T ss_pred cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE-EEEcCC-ccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCC
Confidence 348898998655555478999999987544221 110000 0011124456677 3 44555554 4889999999888
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
+....+.. ......+++
T Consensus 163 ~~~~~i~~---------------------------------------------------------------g~~p~~i~~ 179 (328)
T 3dsm_A 163 KVVDELTI---------------------------------------------------------------GIQPTSLVM 179 (328)
T ss_dssp EEEEEEEC---------------------------------------------------------------SSCBCCCEE
T ss_pred eEEEEEEc---------------------------------------------------------------CCCccceEE
Confidence 75443321 112346778
Q ss_pred eCCC-eEEEEeCC----------CeEEEEECCCCcEEEEecC--CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 397 SKNG-FLLSSSAD----------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 397 sp~g-~l~sgs~D----------g~V~lWd~~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
+|+| +++++..+ +.|.++|..+++....+.. ......++|+| ++++|.++.. .|.+||+.++++
T Consensus 180 ~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 180 DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSC
T ss_pred cCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCce
Confidence 8888 55555444 7899999999988877763 45789999999 8888877654 899999998886
Q ss_pred EE--ecCC-CCCeEEEEEccC-CCEEEEe
Q 011126 464 VD--YTDI-REIVSAVCYCPD-GKVRQNS 488 (493)
Q Consensus 464 ~~--~~~~-~~~I~sv~~spd-G~~l~s~ 488 (493)
.. +... ......++++|+ |.++++.
T Consensus 257 ~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 257 PVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp CSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred eeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 52 2221 467899999995 5554443
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.83 E-value=6.5e-08 Score=98.14 Aligned_cols=238 Identities=10% Similarity=0.019 Sum_probs=135.5
Q ss_pred cceeccCCCeEEeee----------cCCeEEEEECCCccccccccccc--eeeecccCCEEEEEEccCCCEEEEEEC--C
Q 011126 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D 305 (493)
Q Consensus 240 ~~~fsp~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~Lasgs~--D 305 (493)
.++++|+|++|+++. .++.|.++|..+....-. +... ..+. .......+.|+|||++|+.+.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~-I~v~g~~r~~-~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD-IELPDAPRFL-VGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE-EEETTCCCCC-BSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE-EECCCccccc-cCCCcceEEEcCCCCEEEEEecCCC
Confidence 489999999888876 467899999876543211 1000 0000 0122346899999999998874 5
Q ss_pred CcEEEEecCCCeeeeeeeccCCC-----CceEEEeeCCCCceeeeeccCccccce---------------e--------e
Q 011126 306 GTVRVWKVIEHERLDGFDVQDTD-----PSCLYFTINHLSQLIPIDVDKEKIDKT---------------K--------S 357 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--------~ 357 (493)
+.|.+.|+.+++.+..+...... ....++.......+..+.....++... . .
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~ 279 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL 279 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred CeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence 78999999999998888763210 000111222233333333322211100 0 0
Q ss_pred eecCCCceEEEcCCCceeec-ccceEEEe-------cCCCCEeEEEEeCCC-eEEEEe----------CCCeEEEEECCC
Q 011126 358 LRKSSDLTCVVLPPKVFRLL-EKPLHEFQ-------GHSSEVLDLSWSKNG-FLLSSS----------ADKTVRLWQVGI 418 (493)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~-~~~~~~~~-------~h~~~V~~l~~sp~g-~l~sgs----------~Dg~V~lWd~~~ 418 (493)
+.....+.+.+.+....... ..+..... -.......++++|++ +++... ..+.|.+.|+.+
T Consensus 280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence 00011122222222100000 00000000 001112236899987 444432 135799999999
Q ss_pred CcEEEEecCCCcEEEEEEccCCCC-EEEEEe-CCCeEEEEeCCCCeEEEec-CCCCCeEEEEEccC
Q 011126 419 DRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVRIWEVRRCQVVDYT-DIREIVSAVCYCPD 481 (493)
Q Consensus 419 ~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs-~Dg~V~IWdl~~~~~~~~~-~~~~~I~sv~~spd 481 (493)
.+.+..+.-......|.|+| +++ ++++.. .++.|.|+|+.+++++... ....... +..+||
T Consensus 360 ~kvv~~I~vg~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~-~i~~~~ 423 (426)
T 3c75_H 360 GERINKIELGHEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQ-IITTHD 423 (426)
T ss_dssp CCEEEEEEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCC-EEECCC
T ss_pred CeEEEEEECCCCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCc-EEEcCC
Confidence 99999998666799999999 888 888877 5999999999999998643 3333222 445554
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.79 E-value=9e-07 Score=96.76 Aligned_cols=226 Identities=12% Similarity=-0.035 Sum_probs=129.0
Q ss_pred cccceeccCCCeEEeeecC-----CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc-----
Q 011126 238 HGSATLKPGDHELTLGQRM-----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----- 307 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~----- 307 (493)
+...+|+|||++||.+..+ ..|++||+.+..... ...+...+..+.|+|| +.|+.+..|+.
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~--------~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA--------DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE--------EEEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC--------ccCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 4458999999999887654 469999998655311 1111112357899999 99988887654
Q ss_pred ---------EEEEecCCCeee--eeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 308 ---------VRVWKVIEHERL--DGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 308 ---------V~iWdl~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
|++|++.++... ..+...... .....+++++...++.. ... ......+.+++....
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~-~~~----------~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS-SEG----------TDPVNTVHVARVTNG 304 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE-ECT----------TCSCCEEEEEEEETT
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE-Ecc----------CCCcceEEEEECCCC
Confidence 889998776521 122221111 22233333322111111 100 001223444432211
Q ss_pred eecccc-eEEEecCCCCEeEEEEeCCC-eEEEEeC----CCeEEEEECCCC--cEEEEec-CCCcEEEEEEccCCCCEEE
Q 011126 375 RLLEKP-LHEFQGHSSEVLDLSWSKNG-FLLSSSA----DKTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVDDNYFI 445 (493)
Q Consensus 375 ~~~~~~-~~~~~~h~~~V~~l~~sp~g-~l~sgs~----Dg~V~lWd~~~~--~~~~~~~-h~~~V~~v~fsp~d~~~l~ 445 (493)
. .. ...+..+...+.... +|+| .|+..+. .+.|.+||+.++ .....+. +...+..+.|. ++.+++
T Consensus 305 ~---~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~ 378 (741)
T 1yr2_A 305 K---IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFA 378 (741)
T ss_dssp E---ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEE
T ss_pred C---CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEE
Confidence 0 02 344555555555553 4777 6665554 345999999874 3444444 44556677776 467888
Q ss_pred EEeCCCeEEEEeCC-CCeEE-EecC-CCCCeEEEEEccCCCEEEEee
Q 011126 446 SGSIDGKVRIWEVR-RCQVV-DYTD-IREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 446 sgs~Dg~V~IWdl~-~~~~~-~~~~-~~~~I~sv~~spdG~~l~s~s 489 (493)
+...|+..+||.+. +++.. .+.. ....+..++++|+++.++...
T Consensus 379 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 379 SYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp EEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred EEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence 88899987777554 34433 3332 356788999999998666443
No 211
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.78 E-value=2.9e-07 Score=88.07 Aligned_cols=171 Identities=10% Similarity=0.075 Sum_probs=119.9
Q ss_pred CCCEEEEEECCCcEEEEecCCCeeeeeeeccC-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc
Q 011126 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV 373 (493)
Q Consensus 295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (493)
.+++|++++.|+.|.+||..+++.+..+..+. ..+..+.+.+++. ++. . .+..+..++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~--ilv-s---------------~~~~V~~~d~~- 64 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE--ILF-S---------------YSKGAKMITRD- 64 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC--EEE-E---------------CBSEEEEECTT-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC--EEE-e---------------CCCCEEEECCC-
Confidence 35789999999999999999999998888765 3455555555432 222 1 12234444442
Q ss_pred eeecccceEEEecC-CCCEeEEEEeCCC-eEEEEeC-CCeEEEEECCCCcEEEEecC-------CCcEEEEEEccCCCCE
Q 011126 374 FRLLEKPLHEFQGH-SSEVLDLSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFSH-------NNYVTSVAFNPVDDNY 443 (493)
Q Consensus 374 ~~~~~~~~~~~~~h-~~~V~~l~~sp~g-~l~sgs~-Dg~V~lWd~~~~~~~~~~~h-------~~~V~~v~fsp~d~~~ 443 (493)
.+.+..+..+ ...+.++.+.++| ++++.+. ++.|..+|. .++.+..+.. ......+.+.+ ++++
T Consensus 65 ----G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~ 138 (276)
T 3no2_A 65 ----GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNY 138 (276)
T ss_dssp ----SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCE
T ss_pred ----CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCE
Confidence 2234445543 3468889999999 7777776 778888885 6777766641 12345567888 9999
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126 444 FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 444 l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
|++...+++|..||.. ++++........+.++...++|++++++..+
T Consensus 139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~ 185 (276)
T 3no2_A 139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDA 185 (276)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTT
T ss_pred EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCC
Confidence 9999999999999998 8877544444566778889999998877654
No 212
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.77 E-value=9.4e-08 Score=95.28 Aligned_cols=229 Identities=7% Similarity=-0.067 Sum_probs=132.6
Q ss_pred cceeccCCCeEEeee----------cCCeEEEEECCCccccccccccceeeecc-------cCCEEEEEEccCCCEEEEE
Q 011126 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASG 302 (493)
Q Consensus 240 ~~~fsp~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~Lasg 302 (493)
.+.++|++++++++. .++.|.+||..+.+.. .++..+ ......+.|+|||++|+.+
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-------~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa 141 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-------ADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-------EEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence 389999999998886 4789999998865532 222211 1234578999999999988
Q ss_pred EC--CCcEEE--EecCCCeeeeeeeccCCC-----CceEEEeeCCCCceeeeeccC-----ccccce----eee-----e
Q 011126 303 GE--DGTVRV--WKVIEHERLDGFDVQDTD-----PSCLYFTINHLSQLIPIDVDK-----EKIDKT----KSL-----R 359 (493)
Q Consensus 303 s~--Dg~V~i--Wdl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~-----~ 359 (493)
.. +..|.+ +|+.+ +..+...... ....++.....+.+..++... ++.... ... .
T Consensus 142 n~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~ 218 (368)
T 1mda_H 142 LFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ 218 (368)
T ss_dssp ECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE
T ss_pred ccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc
Confidence 75 457888 99877 3444332110 000112222223333333332 111100 000 0
Q ss_pred cCCC--------ceEEEcCCCceeecccceEEEe-------cC---CCCEeEEEEeCCC-eEEEE-e---C-----CCeE
Q 011126 360 KSSD--------LTCVVLPPKVFRLLEKPLHEFQ-------GH---SSEVLDLSWSKNG-FLLSS-S---A-----DKTV 411 (493)
Q Consensus 360 ~s~~--------~~~~~~~~~~~~~~~~~~~~~~-------~h---~~~V~~l~~sp~g-~l~sg-s---~-----Dg~V 411 (493)
.... +.+.+.+..... .+.+..+. .+ ......++++|++ .++.+ . . ++.+
T Consensus 219 ~~~~~~~~~vs~~~V~viD~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~ 296 (368)
T 1mda_H 219 ANYPGMLVWAVASSILQGDIPAAG--ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp ETTTTEEEECBSSCCEEEECCSSC--CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred cccCCEEEEEcCCEEEEEECCCCc--ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence 0001 112222211000 00000000 00 0111226899998 55443 3 2 2456
Q ss_pred EEEECCCCcEEEEecCCCcEEEEEEccCCCC-EEEEEe-CCCeEEEEeCCCCeEEEecCCCCCeEEEEEccC
Q 011126 412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481 (493)
Q Consensus 412 ~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs-~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spd 481 (493)
.++|+.+.+.+..+.-.....+|.|+| +++ ++++.. .++.|.++|+.+++++...........+++++.
T Consensus 297 ~ViD~~t~~vv~~i~vg~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 297 SSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNE 367 (368)
T ss_dssp EEEESSSCCEEECCEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCC
T ss_pred EEEECCCCeEEEEEECCCCcceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeecC
Confidence 699999999999987666799999999 886 667777 599999999999999987766667777777653
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.74 E-value=9.7e-06 Score=81.01 Aligned_cols=231 Identities=8% Similarity=-0.105 Sum_probs=129.4
Q ss_pred eccCCCeEEeeec--CC---eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE----------CCCc
Q 011126 243 LKPGDHELTLGQR--MR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGT 307 (493)
Q Consensus 243 fsp~g~~lasgs~--dg---~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~ 307 (493)
..|+++++.+... .. +|.++|..+.+.. .++.....+ .+.|+|||++|+.+. .++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-------~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-------GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE-------EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence 3467776666543 22 8899998754421 233333334 899999999998875 3678
Q ss_pred EEEEecCCCeeeeeeecc-------CCCCceEEEeeCC----------CCceeeeeccCccccce-eee-----------
Q 011126 308 VRVWKVIEHERLDGFDVQ-------DTDPSCLYFTINH----------LSQLIPIDVDKEKIDKT-KSL----------- 358 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~----------- 358 (493)
|.+||..+.+.+..+... ...+..+.+++++ ...+..++ ...+.... ...
T Consensus 99 v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~ 177 (373)
T 2mad_H 99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAP 177 (373)
T ss_pred EEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCC
Confidence 999999998887776654 1122333333332 23344444 33332211 100
Q ss_pred ----ecCCCceEEEcCCCceeecccceEEEe-----cCCCCE-eEEEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEe
Q 011126 359 ----RKSSDLTCVVLPPKVFRLLEKPLHEFQ-----GHSSEV-LDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVF 425 (493)
Q Consensus 359 ----~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~V-~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~ 425 (493)
....++.+.+++. ... .+.... ....++ ....+.+++ .++..+..+.|.+.|+.... .+..+
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGG----AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCc----EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence 0111222222222 110 010000 111111 223455555 33333467889999987542 22333
Q ss_pred c-----------CCCcEEEEEEccCCCCEEEEEeC----------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC-
Q 011126 426 S-----------HNNYVTSVAFNPVDDNYFISGSI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK- 483 (493)
Q Consensus 426 ~-----------h~~~V~~v~fsp~d~~~l~sgs~----------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~- 483 (493)
. ......-+.++| +++.+..... .+.|.++|+.+++++...........+.|+|||+
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~ 331 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP 331 (373)
T ss_pred eecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCe
Confidence 2 122344578899 7776666543 3589999999999987556666789999999999
Q ss_pred EEEEee
Q 011126 484 VRQNSA 489 (493)
Q Consensus 484 ~l~s~s 489 (493)
.++++.
T Consensus 332 ~l~v~~ 337 (373)
T 2mad_H 332 DLYALS 337 (373)
T ss_pred EEEEEc
Confidence 666654
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.74 E-value=5.6e-07 Score=97.64 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=129.8
Q ss_pred cccceeccCCCeEEe-----eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc-----
Q 011126 238 HGSATLKPGDHELTL-----GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----- 307 (493)
Q Consensus 238 ~~~~~fsp~g~~las-----gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~----- 307 (493)
+..++|+|||++||. |+....|+|||+.++..... .+... ....++|+ ||+.|+.+..+..
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------EEEEE--ESCCCEEE-TTTEEEEEESSCCC----
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------ccCCc--eeccEEEe-CCCEEEEEEecCcccccc
Confidence 334789999999984 44446899999986552110 11111 12467899 9999999888744
Q ss_pred --------EEEEecCCCeee--eeeeccC-CCC--ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 308 --------VRVWKVIEHERL--DGFDVQD-TDP--SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 308 --------V~iWdl~~~~~~--~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
|++|++.+.... ..+.... ... ....+++++. .+.+... .......+.+++....
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~--~l~~~~~----------~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR--FLLISAA----------NSTSGNRLYVKDLSQE 269 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC--EEEEEEE----------SSSSCCEEEEEETTST
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC--EEEEEEc----------cCCCCcEEEEEECCCC
Confidence 999999776531 1222211 111 2233333322 1111111 1111223444433211
Q ss_pred eecccceEEEecCCCCEeEEEEeCCC--eEEEEeCC---CeEEEEECCCCcE---EEEecCCCcEEEEEEccCCCCEEEE
Q 011126 375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD---KTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFIS 446 (493)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~D---g~V~lWd~~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~s 446 (493)
......+..+....... |+++| +++....+ +.|.++|+.++.. .....|...+. .|+| ++++|+.
T Consensus 270 ---~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~ 342 (693)
T 3iuj_A 270 ---NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFA 342 (693)
T ss_dssp ---TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEE
T ss_pred ---CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEE
Confidence 11244555666665555 56655 44454443 6799999987654 33344655554 8899 7787776
Q ss_pred EeC-CC--eEEEEeCCCCeEEEec-CCCCCeEEEEEccCCCEEEEeec
Q 011126 447 GSI-DG--KVRIWEVRRCQVVDYT-DIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 447 gs~-Dg--~V~IWdl~~~~~~~~~-~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
... ++ .|++|++.++....+. .....+..+.++|+++.++....
T Consensus 343 ~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~s 390 (693)
T 3iuj_A 343 EYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFE 390 (693)
T ss_dssp EEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred EEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEec
Confidence 655 44 7999999876554432 33456778888999887765543
No 215
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.73 E-value=5.5e-07 Score=89.88 Aligned_cols=239 Identities=10% Similarity=0.038 Sum_probs=142.9
Q ss_pred ceeccCCCeEEeeec-----CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE----------CC
Q 011126 241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------ED 305 (493)
Q Consensus 241 ~~fsp~g~~lasgs~-----dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~D 305 (493)
....|+++.+.+... ++.|.+.|..+.+. ..++.....+ . +.++|||++|+.+. .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence 456799988877654 68999999875442 2234333444 4 99999999887765 36
Q ss_pred CcEEEEecCCCeeeeeeeccC-------CCCceEEEeeCC----------CCceeeeeccCccccceee-----------
Q 011126 306 GTVRVWKVIEHERLDGFDVQD-------TDPSCLYFTINH----------LSQLIPIDVDKEKIDKTKS----------- 357 (493)
Q Consensus 306 g~V~iWdl~~~~~~~~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----------- 357 (493)
+.|.+||..+.+.+..+.... ..+..+.+++++ ...+..++....++.....
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g 188 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA 188 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCC
Confidence 789999999999988886543 123334433332 2334444444444322221
Q ss_pred ----eecCCCceEEEcCCCc-eeecccceEEEecCCCCEe-EEEEe-CCCeEEEEeCCCeEEEEECCCCc--EEEEec--
Q 011126 358 ----LRKSSDLTCVVLPPKV-FRLLEKPLHEFQGHSSEVL-DLSWS-KNGFLLSSSADKTVRLWQVGIDR--CLRVFS-- 426 (493)
Q Consensus 358 ----~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~-~l~~s-p~g~l~sgs~Dg~V~lWd~~~~~--~~~~~~-- 426 (493)
+..+.++..++++... ..+.......+.....++. ...|. ++|.++-.+.+++|.+.|+.+.. .+..+.
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~ 268 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 268 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecc
Confidence 1233444554444432 1110000000111112222 24664 56755456678999999997654 332221
Q ss_pred ---------CCCcEEEEEEccCCCCEEEEEeC----------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC-EEE
Q 011126 427 ---------HNNYVTSVAFNPVDDNYFISGSI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-VRQ 486 (493)
Q Consensus 427 ---------h~~~V~~v~fsp~d~~~l~sgs~----------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~-~l~ 486 (493)
.......++++| +++.+..... .+.|.+.|+.+++++........+++|.++|||+ .|+
T Consensus 269 ~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 269 TEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLY 347 (386)
T ss_dssp CHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEE
T ss_pred ccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEE
Confidence 112333577788 6666665532 2579999999999997666667899999999997 666
Q ss_pred Eee
Q 011126 487 NSA 489 (493)
Q Consensus 487 s~s 489 (493)
++.
T Consensus 348 ~tn 350 (386)
T 3sjl_D 348 ALS 350 (386)
T ss_dssp EEE
T ss_pred EEc
Confidence 653
No 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.66 E-value=2.4e-06 Score=82.23 Aligned_cols=203 Identities=8% Similarity=0.052 Sum_probs=115.1
Q ss_pred ccccceeccC-CCeEEeeecCCeEEEEECCCcccccccc-ccceeeecccCCEEEEEEccCCCEEEEEECC---------
Q 011126 237 RHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSL-YTGQEFLAHEGSILTMKFSLDGQYLASGGED--------- 305 (493)
Q Consensus 237 ~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D--------- 305 (493)
.+..++++++ |.++++.. .+.|.+|+.. .... .+ ... ....+...+.+++++++|+++++...+
T Consensus 72 ~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~--~~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 72 IPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFE--EIAKKD-SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp CEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEE--ECCSBC-TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEE--EEEecc-CCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 3456889999 76555544 4478889877 3211 11 100 001122458899999999988776655
Q ss_pred ------CcEEEEecCCCeeeeeeeccCCCCceEEEeeC--CCCceeeeeccCccccceeeeecCCCceEEEcCCC-ceee
Q 011126 306 ------GTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN--HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VFRL 376 (493)
Q Consensus 306 ------g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~ 376 (493)
+.|..|+.. ++...... ....+..+.+... .... ...+.......+..++.. ...+
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~-------------~l~v~~~~~~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPY-------------QLIVAETPTKKLWSYDIKGPAKI 211 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEE-------------EEEEEETTTTEEEEEEEEETTEE
T ss_pred cccCCCCeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCC-------------EEEEEECCCCeEEEEECCCCCcc
Confidence 456666654 43322111 1111222222200 1110 111111222333333321 0000
Q ss_pred c-ccceEEEecCC-CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCC-EEEEEeCCC
Q 011126 377 L-EKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDG 451 (493)
Q Consensus 377 ~-~~~~~~~~~h~-~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~-~l~sgs~Dg 451 (493)
. ......+.++. ..+..++++++| ++++...++.|.+||..+++.+..+. +...+.+++|+| +++ ++++...++
T Consensus 212 ~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~ 290 (314)
T 1pjx_A 212 ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENN 290 (314)
T ss_dssp EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTT
T ss_pred ccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCC
Confidence 0 01122333444 567889999999 66676788999999998777766665 557899999999 888 555555678
Q ss_pred eEEEEeCCC
Q 011126 452 KVRIWEVRR 460 (493)
Q Consensus 452 ~V~IWdl~~ 460 (493)
.|..|++..
T Consensus 291 ~l~~~~~~~ 299 (314)
T 1pjx_A 291 AVWKFEWQR 299 (314)
T ss_dssp EEEEEECSS
T ss_pred eEEEEeCCC
Confidence 999999874
No 217
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.54 E-value=7.1e-08 Score=96.48 Aligned_cols=205 Identities=10% Similarity=0.011 Sum_probs=108.3
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
++..+++++.||.|+.||..+.+..-. +.. +.+.+..+..++..+++++.||.|+.||..+++.+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~-------~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT-------LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE-------EEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE-------ecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 567899999999999999876553211 122 34444555567878888889999999999888875554322
Q ss_pred CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE
Q 011126 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s 404 (493)
..... ....+. .. ....+.++.++.++.++....+. +..+..+. ...++|.+ .+++
T Consensus 79 ~~~~~-------~~sp~~---~~-----~~~v~~g~~dg~v~a~D~~tG~~----~w~~~~~~----~~~~~p~~~~v~~ 135 (369)
T 2hz6_A 79 IPELV-------QASPCR---SS-----DGILYMGKKQDIWYVIDLLTGEK----QQTLSSAF----ADSLSPSTSLLYL 135 (369)
T ss_dssp HHHHH-------TTCSCC-------------CCCCEEEEEEEEECCC------------------------------EEE
T ss_pred Ccccc-------ccCceE---ec-----CCEEEEEeCCCEEEEEECCCCcE----EEEecCCC----cccccccCCEEEE
Confidence 10000 000000 00 00112233455666676654332 22222222 13455666 8888
Q ss_pred EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCC---CEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEE-EEEcc
Q 011126 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD---NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA-VCYCP 480 (493)
Q Consensus 405 gs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~---~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~s-v~~sp 480 (493)
++.|+.|+.||..+++.+..+.... .....+.+ +. ..+++++.||.|+.||..+++++.......++.. ..+++
T Consensus 136 ~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~ 213 (369)
T 2hz6_A 136 GRTEYTITMYDTKTRELRWNATYFD-YAASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQR 213 (369)
T ss_dssp EEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTT
T ss_pred EecCCEEEEEECCCCCEEEeEeccc-ccCccccC-CccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecC
Confidence 9999999999999998776654211 12233333 21 5677788999999999999998754445555544 45667
Q ss_pred CCCE
Q 011126 481 DGKV 484 (493)
Q Consensus 481 dG~~ 484 (493)
+|..
T Consensus 214 dg~~ 217 (369)
T 2hz6_A 214 EGLR 217 (369)
T ss_dssp SSCE
T ss_pred CceE
Confidence 7754
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.51 E-value=2.1e-06 Score=93.11 Aligned_cols=200 Identities=11% Similarity=0.074 Sum_probs=110.8
Q ss_pred cccCCEEEEEEccCCCEEEEE-----ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126 282 AHEGSILTMKFSLDGQYLASG-----GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (493)
Q Consensus 282 ~H~~~I~~l~fspdg~~Lasg-----s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (493)
+|...|..+.|||||++||-+ +.+.+|++||+.+++.+... ........+.|+ ++.. ++......... ..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~-l~y~~~~~~~~--~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEG-FFYSSYDKPDG--SE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTE-EEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCE-EEEEEecCccc--cc
Confidence 466689999999999988843 33357999999999865431 111112234555 4332 22222211100 00
Q ss_pred eeecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEEEeCCC-eE-EEEeC---CCeEEEEECCCC--cEEEEecCC
Q 011126 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNG-FL-LSSSA---DKTVRLWQVGID--RCLRVFSHN 428 (493)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g-~l-~sgs~---Dg~V~lWd~~~~--~~~~~~~h~ 428 (493)
.........+..+...........+..... |...+..+.|+|+| +| ++.+. ...|++||+.++ .......+.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 000011223444433221111112222233 45567889999999 44 44432 358999999876 333333455
Q ss_pred CcEEEEEEccCCCCEE-EEEeCC---CeEEEEeCCCCeE---EEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 429 NYVTSVAFNPVDDNYF-ISGSID---GKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 429 ~~V~~v~fsp~d~~~l-~sgs~D---g~V~IWdl~~~~~---~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
...... |++ ++..| +....+ ++|.+||+.++.. ..+..+...+. .|+|+|+.|+....
T Consensus 281 ~~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 281 DADVSL-VDN-KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM 345 (693)
T ss_dssp SSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred CceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence 555555 566 45544 444443 6899999987653 34455555554 89999998887654
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.46 E-value=1.4e-05 Score=76.94 Aligned_cols=191 Identities=12% Similarity=0.064 Sum_probs=105.5
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---------Cc
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---------GT 307 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---------g~ 307 (493)
.+.+++++|+|+++++. ++.|.+|+..+.... .+... ........++.++++|+|+++++.... ..
T Consensus 55 ~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~--~~~~~-~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 55 PVSSVALRQSGGYVATI--GTKFCALNWKEQSAV--VLATV-DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp CEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEE--EEEEC-CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred ceEEEEECCCCCEEEEE--CCeEEEEECCCCcEE--EEEec-CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 34568899999965553 568999998654321 11000 000112458899999999977654322 33
Q ss_pred EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCC--Cceeec-ccceEEE
Q 011126 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP--KVFRLL-EKPLHEF 384 (493)
Q Consensus 308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~~~-~~~~~~~ 384 (493)
..||.+........+......+..+.+.++.. .++..+. ....+..++. ....+. .+.+..+
T Consensus 130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~-~lyv~~~--------------~~~~i~~~~~d~~~G~~~~~~~~~~~ 194 (297)
T 3g4e_A 130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHK-IFYYIDS--------------LSYSVDAFDYDLQTGQISNRRSVYKL 194 (297)
T ss_dssp EEEEEECTTSCEEEEEEEESBEEEEEECTTSC-EEEEEEG--------------GGTEEEEEEECTTTCCEEEEEEEEEC
T ss_pred cEEEEEECCCCEEEEeeccccccceEEcCCCC-EEEEecC--------------CCCcEEEEeccCCCCcccCcEEEEEC
Confidence 46666643322222221111223333333221 1112111 1222222221 111111 1112233
Q ss_pred ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEc-cCCCCEEEEEe
Q 011126 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN-PVDDNYFISGS 448 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fs-p~d~~~l~sgs 448 (493)
..+...+..+++.++| ++++....+.|.+||..+++.+..+. +...+++++|. | +++.|...+
T Consensus 195 ~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 195 EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESG-GGCEEEEEE
T ss_pred CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCC-CCCEEEEEc
Confidence 3345677899999999 66777778899999999999988887 45789999998 7 666554443
No 220
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.46 E-value=3.3e-05 Score=72.97 Aligned_cols=181 Identities=7% Similarity=0.059 Sum_probs=117.1
Q ss_pred CEEEEEEccCCCEEEEEEC--CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCC
Q 011126 286 SILTMKFSLDGQYLASGGE--DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (493)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~--Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 363 (493)
....|.|++++.++++.+. ++.|++.|+.+++.+..+...... ....+...+ ..++. ..-.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~g-~~lyv--------------~t~~~ 85 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLLN-EKLYQ--------------VVWLK 85 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEET-TEEEE--------------EETTC
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEeC-CEEEE--------------EEecC
Confidence 3689999998755555543 579999999999988887654321 111122211 12222 22244
Q ss_pred ceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCC------CcEEEEEE
Q 011126 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN------NYVTSVAF 436 (493)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~------~~V~~v~f 436 (493)
..+.+++...+.. +.++...... .+.++++| .|+.+..+++|.++|..+.+.+..+.-. ..++.+.|
T Consensus 86 ~~v~viD~~t~~v----~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 86 NIGFIYDRRTLSN----IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp SEEEEEETTTTEE----EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred CEEEEEECCCCcE----EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 4566666554433 3333221111 23345566 5555667899999999999988887622 24678888
Q ss_pred ccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC--------------CCeEEEEEccCCCEEEEeec
Q 011126 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--------------EIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~--------------~~I~sv~~spdG~~l~s~s~ 490 (493)
. ++.+++....++.|.+.|..+++++...... ...+.|+|+|+++.+++++.
T Consensus 160 ~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 160 I--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp E--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred E--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 7 5666666667899999999999988544332 36799999999988877764
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.46 E-value=3.2e-05 Score=78.25 Aligned_cols=192 Identities=13% Similarity=0.122 Sum_probs=117.4
Q ss_pred ceeccCCCeEEeeecCC--eEEEEECCCccccccccccceeeec-ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 241 ATLKPGDHELTLGQRMR--RVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
++|+|++..|+++..++ .|.+++....... ..+ ..+.. +...+++++++|++..|+.+..++.|+.||..++.
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~-~~~---g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP-TRI---GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE-EEE---EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCcee-EEe---eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 88999999888887765 7888876543220 000 01112 44567889999954555557778899999998765
Q ss_pred eeee----eeccCC-CCc-eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC----
Q 011126 318 RLDG----FDVQDT-DPS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH---- 387 (493)
Q Consensus 318 ~~~~----~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h---- 387 (493)
.... ...... .+. .+.+.+.. ..++..+ .....+..++.... +..+.++
T Consensus 252 ~~~~~~~~~~g~~~~~P~~~ia~~p~~-g~lyv~d--------------~~~~~I~~~~~~g~------~~~~~g~~~~~ 310 (409)
T 3hrp_A 252 VTLIKQLELSGSLGTNPGPYLIYYFVD-SNFYMSD--------------QNLSSVYKITPDGE------CEWFCGSATQK 310 (409)
T ss_dssp EEEEEECCCCSCCCCSSCCEEEEETTT-TEEEEEE--------------TTTTEEEEECTTCC------EEEEEECTTCC
T ss_pred EEEEecccccCCCCCCccccEEEeCCC-CEEEEEe--------------CCCCEEEEEecCCC------EEEEEeCCCCC
Confidence 3221 111111 111 34444322 2222222 22223333332210 1112221
Q ss_pred -----------CCCEeEEEEeCCC-eEEEEe-CCCeEEEEECCCCcEEEEecC---------------CCcEEEEEEccC
Q 011126 388 -----------SSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSH---------------NNYVTSVAFNPV 439 (493)
Q Consensus 388 -----------~~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~~~~~~~~h---------------~~~V~~v~fsp~ 439 (493)
-.....|+++|+| ++++-. .++.|+.|++.++.......+ -.....|+++|
T Consensus 311 g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~- 389 (409)
T 3hrp_A 311 TVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG- 389 (409)
T ss_dssp SCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-
T ss_pred CcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC-
Confidence 2457899999999 777777 889999999887776554443 24689999999
Q ss_pred CCCEEEEEeCCCeEEEEeC
Q 011126 440 DDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 440 d~~~l~sgs~Dg~V~IWdl 458 (493)
++.++++-..+++|+.+++
T Consensus 390 ~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 390 EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SSEEEEEESTTCEEEEEEE
T ss_pred CCCEEEEECCCCeEEEEEe
Confidence 7888888888899988865
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.43 E-value=6.8e-06 Score=79.36 Aligned_cols=144 Identities=8% Similarity=0.016 Sum_probs=98.7
Q ss_pred eecccCCEEEEEEccCCC-EEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeee
Q 011126 280 FLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (493)
Q Consensus 280 l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (493)
+..+........|+|+|+ ++++...++.|..|+. +++. .
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~-------------------------------------- 79 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-D-------------------------------------- 79 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-E--------------------------------------
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-E--------------------------------------
Confidence 334455677899999998 5667777889999986 3321 1
Q ss_pred ecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEE
Q 011126 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVT 432 (493)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~ 432 (493)
.+..+...+..++++++| ++++...++.|.+|+.. ++...... ....++
T Consensus 80 ------------------------~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 80 ------------------------VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp ------------------------EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred ------------------------EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence 111234567889999999 44444456889999986 55433222 124567
Q ss_pred EEEEccCCCCEEEE----EeC-------------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 433 SVAFNPVDDNYFIS----GSI-------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 433 ~v~fsp~d~~~l~s----gs~-------------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.+++.| +++++++ |.. .+.|+.||..++++..+. .....+.++|+|||+.|+++..
T Consensus 135 ~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~ 207 (305)
T 3dr2_A 135 DLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQT 207 (305)
T ss_dssp CEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEEC
T ss_pred CEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEec
Confidence 899999 9998887 432 356888888777665444 4456789999999998877654
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.41 E-value=1.7e-05 Score=79.95 Aligned_cols=182 Identities=14% Similarity=0.184 Sum_probs=118.9
Q ss_pred cCCCeEEe-eecCCeEEEEECCCccccccccccceeee------c-ccCCEEEEEEccCCCEEEEEECC------CcEEE
Q 011126 245 PGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFL------A-HEGSILTMKFSLDGQYLASGGED------GTVRV 310 (493)
Q Consensus 245 p~g~~las-gs~dg~V~vwd~~~~~~~~~~~~~~~~l~------~-H~~~I~~l~fspdg~~Lasgs~D------g~V~i 310 (493)
+++++|++ |..+++|.|+|+........ ..+++. . ....-..+...|+| +++++..+ |.|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~---~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPK---IIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCE---EEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCce---eeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence 77777655 66889999999874432221 122221 0 11234567888999 77776555 67889
Q ss_pred EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (493)
.|..+.+.+..+..... ...-
T Consensus 169 lD~~T~~v~~~~~~~~~-----------------------------------------------------------~~~~ 189 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRG-----------------------------------------------------------DQYL 189 (462)
T ss_dssp ECTTTCCEEEECCSBCT-----------------------------------------------------------TCCC
T ss_pred EECCCCeEEEEEccCCC-----------------------------------------------------------Cccc
Confidence 99888876665542211 0111
Q ss_pred EeEEEEeCCC-eEEEEe-------------------CCCeEEEEECCCCcEEEEecCC---CcEEEEEE--ccCCCCEEE
Q 011126 391 VLDLSWSKNG-FLLSSS-------------------ADKTVRLWQVGIDRCLRVFSHN---NYVTSVAF--NPVDDNYFI 445 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs-------------------~Dg~V~lWd~~~~~~~~~~~h~---~~V~~v~f--sp~d~~~l~ 445 (493)
-.++-|+|++ .+++.. .+.+|.+||+.+++.+.++... .....|.| +| +++++.
T Consensus 190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aY 268 (462)
T 2ece_A 190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGF 268 (462)
T ss_dssp CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEE
T ss_pred cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEE
Confidence 2356678877 666653 4789999999999888888753 34555656 99 888877
Q ss_pred EEe------CCCeEEEEeCCCCeE-----EEecCC----------------CCCeEEEEEccCCCEEEEeec
Q 011126 446 SGS------IDGKVRIWEVRRCQV-----VDYTDI----------------REIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 446 sgs------~Dg~V~IWdl~~~~~-----~~~~~~----------------~~~I~sv~~spdG~~l~s~s~ 490 (493)
.++ .+++|.+|....++. +..... ...+..|.++|||++|.++..
T Consensus 269 V~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr 340 (462)
T 2ece_A 269 INMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW 340 (462)
T ss_dssp EEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred EEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence 766 567898877665532 211110 245789999999999998864
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.37 E-value=1e-05 Score=82.06 Aligned_cols=235 Identities=8% Similarity=0.003 Sum_probs=131.0
Q ss_pred cCCCeEEeeec-C----CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE----------CCCcEE
Q 011126 245 PGDHELTLGQR-M----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVR 309 (493)
Q Consensus 245 p~g~~lasgs~-d----g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~V~ 309 (493)
|+++.+++... + +.|.+.|..+.+.. .++..-..+ .|.++|||++|+.+. .++.|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-------~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-------GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-------EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-------EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence 45565555433 2 79999998755432 233333345 799999999887775 367899
Q ss_pred EEecCCCeeeeeeecc-------CCCCceEEEeeCC----------CCceeeeeccCccccceeee--------------
Q 011126 310 VWKVIEHERLDGFDVQ-------DTDPSCLYFTINH----------LSQLIPIDVDKEKIDKTKSL-------------- 358 (493)
Q Consensus 310 iWdl~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-------------- 358 (493)
++|..+.+.+..+... ...+..+.+.+++ .+.+..++....++......
T Consensus 153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~ 232 (426)
T 3c75_H 153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVF 232 (426)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEE
Confidence 9999999988887654 1122233332222 23444444444433222211
Q ss_pred -ecCCCceEEEcCCCceeecccceEEEecCCCCE-eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--EEec-------
Q 011126 359 -RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV-LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVFS------- 426 (493)
Q Consensus 359 -~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--~~~~------- 426 (493)
..+.++.+.+.+.............+.....++ ..+.+.+++ .++..+..+.|.+.|+...... ..+.
T Consensus 233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i 312 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER 312 (426)
T ss_dssp EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence 111122222221110000000000001111111 134567777 5555567788999998655422 1111
Q ss_pred -C---CCcEEEEEEccCCCCEEEEEeC----------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC-EEEEee
Q 011126 427 -H---NNYVTSVAFNPVDDNYFISGSI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-VRQNSA 489 (493)
Q Consensus 427 -h---~~~V~~v~fsp~d~~~l~sgs~----------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~-~l~s~s 489 (493)
. ......++++| +++.+++... ++.|.+.|+.+.+++...........+.|+|||+ .++++.
T Consensus 313 ~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 313 ADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp GGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred ccccccCCceeeEEcC-CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEc
Confidence 0 11112368999 7776555432 3579999999999997655556789999999999 777765
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.35 E-value=8.3e-05 Score=69.62 Aligned_cols=178 Identities=11% Similarity=0.143 Sum_probs=116.1
Q ss_pred EEEEEEccCCCEEEEEECCC--cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126 287 ILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (493)
Q Consensus 287 I~~l~fspdg~~Lasgs~Dg--~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 364 (493)
...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+..... ....-+...+ ..++.. .-.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g-~~ly~l--------------tw~~~ 107 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWK-DKIVGL--------------TWKNG 107 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEET-TEEEEE--------------ESSSS
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeC-CEEEEE--------------EeeCC
Confidence 4788998 677777888776 899999999999888865432 1111111111 112211 22345
Q ss_pred eEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC---C---CcEEEEEEc
Q 011126 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---N---NYVTSVAFN 437 (493)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h---~---~~V~~v~fs 437 (493)
.+.+++...+.. +.++..... -..+ ++++ .|+.+..++.|.++|..+.+.+..+.- . ..++-+.|.
T Consensus 108 ~v~v~D~~t~~~----~~ti~~~~e-G~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 108 LGFVWNIRNLRQ----VRSFNYDGE-GWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp EEEEEETTTCCE----EEEEECSSC-CCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEEEECccCcE----EEEEECCCC-ceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 566666655443 334432221 1233 3455 555555678899999999998888752 2 334567775
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC-------------CCCeEEEEEccCCCEEEEeec
Q 011126 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-------------REIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 438 p~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~-------------~~~I~sv~~spdG~~l~s~s~ 490 (493)
++.+++..-.+..|.+.|..+++++.+... ....+.|+|+|+++.|.+.+.
T Consensus 181 --~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 --DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp --TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred --CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 677776666788999999999998753322 236799999999988887764
No 226
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.29 E-value=5.7e-05 Score=78.75 Aligned_cols=234 Identities=11% Similarity=-0.015 Sum_probs=141.4
Q ss_pred ccCCCeEEeeec-CCeEEEEECCCccccccccccceeee-cccCCEEEEEE-c-cCCCEEEEEE----------------
Q 011126 244 KPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKF-S-LDGQYLASGG---------------- 303 (493)
Q Consensus 244 sp~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~f-s-pdg~~Lasgs---------------- 303 (493)
.+||+++.+... +++|.+-|+...+. .+.+. .....+..+++ + |++.+++.++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-------~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-------DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-------EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-------eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 348888777554 66799999875432 22111 12245788888 5 9999998885
Q ss_pred --CCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccc-----------cceee--------eecCC
Q 011126 304 --EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI-----------DKTKS--------LRKSS 362 (493)
Q Consensus 304 --~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--------~~~s~ 362 (493)
.++.+.+.|..+.+....+.... .+..+.+.+++.. ++....+.... ..... .....
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~-~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKW-AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSE-EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCE-EEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 34679999999999888887755 3445555444322 11111111100 00000 00000
Q ss_pred C----ceEEEcCCCceeecccc-eEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc------------EEE
Q 011126 363 D----LTCVVLPPKVFRLLEKP-LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR------------CLR 423 (493)
Q Consensus 363 ~----~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~------------~~~ 423 (493)
. ..+.+++..... .+. +..+.. .....++.++|+| .++++..+.+|.++|+.+.+ ...
T Consensus 249 k~~~i~~V~VID~~~~~--~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEA--SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp CSEEETTEEEEECSGGG--CCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CeeEECcEEEEeCcccC--CceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 0 123333333210 112 222222 2345689999999 55666688999999998653 445
Q ss_pred EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC----------CeEEEecCCCCCeE------EEEEccCCCEEEE
Q 011126 424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----------CQVVDYTDIREIVS------AVCYCPDGKVRQN 487 (493)
Q Consensus 424 ~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~----------~~~~~~~~~~~~I~------sv~~spdG~~l~s 487 (493)
...-......++|+| +|...++.-.|+.|.+||+.+ .+++........+- .+.++|||++|++
T Consensus 326 ~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 326 EPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp CCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred EcCCCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 556677889999999 886666777899999999987 45664333333321 2245899999998
Q ss_pred eec
Q 011126 488 SAC 490 (493)
Q Consensus 488 ~s~ 490 (493)
+..
T Consensus 405 ~Nk 407 (595)
T 1fwx_A 405 LSK 407 (595)
T ss_dssp EES
T ss_pred cCC
Confidence 763
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.28 E-value=2.9e-05 Score=76.34 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=76.2
Q ss_pred cCCCCEeEEEEeCCC-eEEEEeC-----CCeEEEEECCCCcEEEEecC-------CCcEEEEEEccCCCCEEEEEe---C
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGIDRCLRVFSH-------NNYVTSVAFNPVDDNYFISGS---I 449 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs~-----Dg~V~lWd~~~~~~~~~~~h-------~~~V~~v~fsp~d~~~l~sgs---~ 449 (493)
+|...+..|++.++| ++++-.. ++.|.+||+.+++.++.+.. ...+..++++|.++.++++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 356689999999999 4444333 57899999999987776642 245789999983344556655 6
Q ss_pred CCeEEEEeCCCCeEEEecCC------------------------------CCCeEEEEEccCCCEEEEeec
Q 011126 450 DGKVRIWEVRRCQVVDYTDI------------------------------REIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 450 Dg~V~IWdl~~~~~~~~~~~------------------------------~~~I~sv~~spdG~~l~s~s~ 490 (493)
++.|.+||+.+++....... ...++.|+|+|||+.|+++..
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence 88999999998876653211 123688999999998887653
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.28 E-value=4.6e-05 Score=74.38 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=67.2
Q ss_pred CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecC-----CCcEEEEEEccCCCCEEEEEeC------CCeEEEEe
Q 011126 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-----NNYVTSVAFNPVDDNYFISGSI------DGKVRIWE 457 (493)
Q Consensus 389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h-----~~~V~~v~fsp~d~~~l~sgs~------Dg~V~IWd 457 (493)
..+.+++|+|+|.++.++.+ .|.+||..+++....... ...++.+.++| +++++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence 45788999999943334444 599999988876544321 24689999999 8987776542 25666666
Q ss_pred CCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 458 VRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 458 l~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
++++..+.......+.++|+|||+.++.+.
T Consensus 168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 168 --KGKVTKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp --TTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred --CCcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 566554433444678999999999776654
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.26 E-value=4.1e-05 Score=77.24 Aligned_cols=182 Identities=11% Similarity=0.134 Sum_probs=112.1
Q ss_pred ceeccCCCeEEeeecC------CeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEE----------
Q 011126 241 ATLKPGDHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGG---------- 303 (493)
Q Consensus 241 ~~fsp~g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs---------- 303 (493)
+.+.|+| ++++...+ |.|.+.|..+....- .+.. ..+. .--+.+.|+|+++.+++..
T Consensus 143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~-~~~~----~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g 216 (462)
T 2ece_A 143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG-KWEI----DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDG 216 (462)
T ss_dssp EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE-ECCS----BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE-EEcc----CCCCccccceEEECCCCCEEEEccCcCccccccc
Confidence 5677898 66665444 789999987544211 1110 1111 2234688899999888874
Q ss_pred ---------CCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 304 ---------EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 304 ---------~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
...+|.+||+.+++.+.++.....
T Consensus 217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~----------------------------------------------- 249 (462)
T 2ece_A 217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE----------------------------------------------- 249 (462)
T ss_dssp CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT-----------------------------------------------
T ss_pred cchhhhhhccCCEEEEEECCCCcEeeEEecCCC-----------------------------------------------
Confidence 367899999988776555543210
Q ss_pred eecccceEEEecCCCCEeEEEE--eCCC-e-EEEEe-----CCCeEEEEECCCCcE--EEEe--cC--------------
Q 011126 375 RLLEKPLHEFQGHSSEVLDLSW--SKNG-F-LLSSS-----ADKTVRLWQVGIDRC--LRVF--SH-------------- 427 (493)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~l~~--sp~g-~-l~sgs-----~Dg~V~lWd~~~~~~--~~~~--~h-------------- 427 (493)
......|.| +|++ + ++++- .+++|.+|....+.. ++.+ ..
T Consensus 250 -------------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 250 -------------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp -------------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred -------------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 011223334 7777 3 33444 566777665543321 1111 00
Q ss_pred ---CCcEEEEEEccCCCCEEEEEeC-CCeEEEEeCCC---CeEEEecCCC---------------CCeEEEEEccCCCEE
Q 011126 428 ---NNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR---CQVVDYTDIR---------------EIVSAVCYCPDGKVR 485 (493)
Q Consensus 428 ---~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~~---~~~~~~~~~~---------------~~I~sv~~spdG~~l 485 (493)
...+..|.++| |+++|.++.. .+.|.+||+.. .+++...... .....+.++|||++|
T Consensus 317 ~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 317 KAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp TEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred ccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 24578899999 9998887765 68999999863 3444322221 135789999999999
Q ss_pred EEee
Q 011126 486 QNSA 489 (493)
Q Consensus 486 ~s~s 489 (493)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9887
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.26 E-value=3.2e-05 Score=83.44 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=61.1
Q ss_pred CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCCeEEEEEccCCCEEE
Q 011126 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 409 g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~I~sv~~spdG~~l~ 486 (493)
+.|..||+.+++.+..+.+..++....+.. .+.+++.++.||.|++||+.+++++.. .......+-+.|.++|+.++
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 789999999999988887766666666777 788888899999999999999998843 23333334566789997555
Q ss_pred Ee
Q 011126 487 NS 488 (493)
Q Consensus 487 s~ 488 (493)
+.
T Consensus 536 ~~ 537 (677)
T 1kb0_A 536 SV 537 (677)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.25 E-value=4.1e-05 Score=76.10 Aligned_cols=216 Identities=9% Similarity=-0.074 Sum_probs=119.0
Q ss_pred eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE----------CCCcEEEEecCCCeeeeeeecc--
Q 011126 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVRVWKVIEHERLDGFDVQ-- 325 (493)
Q Consensus 258 ~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~V~iWdl~~~~~~~~~~~~-- 325 (493)
+|.+.|..+.+.. .++.....+ .+.++|||++|+.+. .+++|.+||+.+++.+..+..+
T Consensus 47 ~vsvID~~t~~v~-------~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVTL-------GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEEE-------EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred eEEEEECCCCeEE-------EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence 8889998754422 233333345 799999999888886 3688999999999999998765
Q ss_pred -----CCCCceEEEeeCCCCceeeeecc-Cccccc----e--------------------eeeecCCCceEEEcCCCc--
Q 011126 326 -----DTDPSCLYFTINHLSQLIPIDVD-KEKIDK----T--------------------KSLRKSSDLTCVVLPPKV-- 373 (493)
Q Consensus 326 -----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~--------------------~~~~~s~~~~~~~~~~~~-- 373 (493)
...+..+.+++++...... +.. ...+.. . ..+..+.++.+...+...
T Consensus 118 ~~~~~g~~P~~ia~SpDGk~lyVa-n~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 118 PRFSVGPRVHIIGNCASSACLLFF-LFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp CSCCBSCCTTSEEECTTSSCEEEE-ECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred cccccCCCcceEEEcCCCCEEEEE-ccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 1345666666655432222 111 110000 0 001111222222222211
Q ss_pred ---eeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEecC--------C---CcEEEEEE
Q 011126 374 ---FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSH--------N---NYVTSVAF 436 (493)
Q Consensus 374 ---~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~~h--------~---~~V~~v~f 436 (493)
..........+.-...+. + .+++ .++..+. +.|.+.|+.... .+..+.. . .....+.|
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~ 271 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred ccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence 000000000000111222 3 4554 4444445 899999986532 3332211 1 11112689
Q ss_pred ccCCCCEEEEEeC---------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 437 NPVDDNYFISGSI---------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 437 sp~d~~~l~sgs~---------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
+| +++.+..+.. ++.+.++|+.+.+++...........|.|+|||+.++++.
T Consensus 272 s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~ 332 (368)
T 1mda_H 272 LK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp ET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred cC-CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEc
Confidence 99 8777665432 2356699999999987655555789999999998655443
No 232
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.24 E-value=0.0001 Score=69.06 Aligned_cols=178 Identities=10% Similarity=0.013 Sum_probs=116.2
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCce
Q 011126 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (493)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 365 (493)
-...|.|+ ++.++.+.+.+|.|+++|+.+++.+..+ ... .....-+...+ ..++.. .-.+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g-~~Ly~l--------------tw~~~~ 117 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDG-ERLYQL--------------TWTEGL 117 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECS-SCEEEE--------------ESSSCE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeC-CEEEEE--------------EccCCE
Confidence 35788887 4667788888999999999999988777 432 22222122221 122222 223455
Q ss_pred EEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC---C---CcEEEEEEcc
Q 011126 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---N---NYVTSVAFNP 438 (493)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h---~---~~V~~v~fsp 438 (493)
+.+++...++. +.++... ..-..++ +++ .|+.+..++.|.++|..+.+.+..+.- . ..++-+.|.
T Consensus 118 v~V~D~~Tl~~----~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 118 LFTWSGMPPQR----ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp EEEEETTTTEE----EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEEECCcCcE----EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence 66666655443 3333322 1223444 445 666666789999999999999888762 2 245677776
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEEecCC--------------CCCeEEEEEccCCCEEEEeec
Q 011126 439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--------------REIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 439 ~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~--------------~~~I~sv~~spdG~~l~s~s~ 490 (493)
++.+++..-.+..|.+.|..+++++.+... ....+.|+|+|+++.|.+.+.
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 577666666788999999999998753322 246799999999877776654
No 233
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.21 E-value=0.00057 Score=63.31 Aligned_cols=180 Identities=11% Similarity=0.107 Sum_probs=116.8
Q ss_pred CCEEEEEEccCCCEEEEEECCC--cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126 285 GSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (493)
Q Consensus 285 ~~I~~l~fspdg~~Lasgs~Dg--~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 362 (493)
.-...+.|++ +.++.+.+.+| .|+++|+.+++.+..+....... ..-+...+ ..++.. .-.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f-geGi~~~~-~~ly~l--------------tw~ 83 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF-GAGIVAWR-DRLIQL--------------TWR 83 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC-EEEEEEET-TEEEEE--------------ESS
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc-eeEEEEeC-CEEEEE--------------Eee
Confidence 3477899986 66667777754 89999999999988886654321 11111111 112221 223
Q ss_pred CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC---C---CcEEEEE
Q 011126 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---N---NYVTSVA 435 (493)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h---~---~~V~~v~ 435 (493)
+..+.+++...+.. +.++..... -..|+ +++ .|+.+..++.|.++|..+.+.+..+.- . ..++-+.
T Consensus 84 ~~~v~v~D~~tl~~----~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 84 NHEGFVYDLATLTP----RARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp SSEEEEEETTTTEE----EEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred CCEEEEEECCcCcE----EEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 45566666655443 334433222 23444 455 555556689999999999998888762 1 3456677
Q ss_pred EccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC--------------CCCCeEEEEEccCCCEEEEeec
Q 011126 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--------------IREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~--------------~~~~I~sv~~spdG~~l~s~s~ 490 (493)
|. ++.+++..-.+..|.+.|..+++++.+.. .....+.|+|+|+++.|.+.+.
T Consensus 157 ~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 157 WV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred Ee--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 65 57777666678899999999999884322 1246799999999888877764
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.19 E-value=5.1e-05 Score=82.10 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=59.4
Q ss_pred CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec-CCCCCeEEEEEccCCCEE
Q 011126 408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT-DIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 408 Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~-~~~~~I~sv~~spdG~~l 485 (493)
+++|+.||+.+++.+..+.+...+....+.. .+.+++.|+.||.|+.||.++++++. +. ......+-+.|..+|+..
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 4789999999999988887555555556666 78899999999999999999999884 32 222223447788999754
Q ss_pred EE
Q 011126 486 QN 487 (493)
Q Consensus 486 ~s 487 (493)
++
T Consensus 533 v~ 534 (689)
T 1yiq_A 533 VT 534 (689)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.13 E-value=0.0014 Score=61.45 Aligned_cols=219 Identities=9% Similarity=-0.019 Sum_probs=122.1
Q ss_pred cccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEEecCC
Q 011126 238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE 315 (493)
Q Consensus 238 ~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iWdl~~ 315 (493)
...+++++++..| ++-...+.|.+++....... . .+.........|++++++..|+.+ ...+.|.++++..
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~-----~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g 110 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--T-----IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--E-----EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--E-----EEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence 4458999966544 45556789999998654311 1 111222467899999976655544 4567899999864
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL 394 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l 394 (493)
.............+..+.+.+.. ..++..+... ....+..+.... .....+ .........|
T Consensus 111 ~~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~------------~~~~I~~~~~dg-----~~~~~~~~~~~~~P~gi 172 (267)
T 1npe_A 111 TQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNR------------DNPKIETSHMDG-----TNRRILAQDNLGLPNGL 172 (267)
T ss_dssp CSCEEEECSSCSSEEEEEEETTT-TEEEEEECCS------------SSCEEEEEETTS-----CCCEEEECTTCSCEEEE
T ss_pred CCEEEEEECCCCCccEEEEeeCC-CEEEEEECCC------------CCcEEEEEecCC-----CCcEEEEECCCCCCcEE
Confidence 33221111111222333333221 2222222110 011222221110 111111 1223467899
Q ss_pred EEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC-
Q 011126 395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE- 471 (493)
Q Consensus 395 ~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~- 471 (493)
++++++ ++++-...+.|.++|+........+........++.. .+.++++....+.|.++|..+++.+.......
T Consensus 173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~ 250 (267)
T 1npe_A 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ 250 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred EEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc
Confidence 999975 5566667789999999865544444433445667653 34455555566899999999998875433322
Q ss_pred -CeEEEEEccCCC
Q 011126 472 -IVSAVCYCPDGK 483 (493)
Q Consensus 472 -~I~sv~~spdG~ 483 (493)
....|++.|++.
T Consensus 251 ~~p~gi~~~~~~~ 263 (267)
T 1npe_A 251 TRLYGITIALSQC 263 (267)
T ss_dssp CCCCCEEEECSCC
T ss_pred cccceeeecCccC
Confidence 477888888875
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.06 E-value=0.00095 Score=62.91 Aligned_cols=195 Identities=11% Similarity=0.048 Sum_probs=120.3
Q ss_pred cceeccCCCeEEeeec--CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEEecCCC
Q 011126 240 SATLKPGDHELTLGQR--MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEH 316 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~--dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iWdl~~~ 316 (493)
.+.|+|++.+.++.+. .+.|.+.|..+.+.... .. +..+. ....+.+. +..|+.+ -.++.|.++|..+.
T Consensus 25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~-i~----l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI-HK----MDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE-EE----CCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE-Ee----cCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence 3889998765555443 68999999986653221 10 11221 22244554 5555544 46789999999999
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLS 395 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~ 395 (493)
+.+..+... ......+++++.. ++ ... ....+.++++..+...........+ .-..++.+.
T Consensus 97 ~v~~~i~~g--~~~g~glt~Dg~~-l~--------------vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 97 SNIKNFTHQ--MKDGWGLATDGKI-LY--------------GSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EEEEEEECC--SSSCCEEEECSSS-EE--------------EEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred cEEEEEECC--CCCeEEEEECCCE-EE--------------EEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 998888755 1112223332211 11 112 3456777777655442211111111 112467888
Q ss_pred EeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCC--------------CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--------------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~--------------~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
|. +| +++....++.|.+-|..+++.+..+... ...+.|+|+|...++++++...++|++.++..
T Consensus 159 ~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 159 YI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 88 67 5555557899999999999999988632 35689999994446778888899999998865
Q ss_pred C
Q 011126 461 C 461 (493)
Q Consensus 461 ~ 461 (493)
.
T Consensus 238 ~ 238 (266)
T 2iwa_A 238 V 238 (266)
T ss_dssp C
T ss_pred c
Confidence 4
No 237
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.05 E-value=0.002 Score=61.87 Aligned_cols=222 Identities=12% Similarity=0.044 Sum_probs=122.5
Q ss_pred cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC-C-cEEEEecCCCe
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-G-TVRVWKVIEHE 317 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g-~V~iWdl~~~~ 317 (493)
.++++++|.++++-...++|..|+....... +..-......|++.++|+++++.... + .|..++..+++
T Consensus 36 gia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---------~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 36 NLASAPDGTIFVTNHEVGEIVSITPDGNQQI---------HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCCEEE---------EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred eEEECCCCCEEEEeCCCCeEEEECCCCceEE---------EEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 4889999997777778899999987643211 11123468899999999966655433 2 36666766766
Q ss_pred eeeeeeccCCCC-ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce--eec--ccceE--EEecCCCC
Q 011126 318 RLDGFDVQDTDP-SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF--RLL--EKPLH--EFQGHSSE 390 (493)
Q Consensus 318 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~--~~~~~--~~~~h~~~ 390 (493)
............ ..... .....++.. ....+.++.++.... .+. ...+. ...+.-..
T Consensus 107 ~~~~~~~~~~~~~~g~~~--~~~~~~~v~--------------d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITP--LSDTQYLTA--------------DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEEEEECTTCSCEEEEEE--SSSSEEEEE--------------ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred EEEEEeCCCccccCcccc--cCCCcEEEE--------------ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 433222211100 01110 111111111 112223333332210 000 00000 00011123
Q ss_pred EeEEEEeCCC--eEEEEeCCCeEEEEECCC-CcE--EEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~--~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
...| +|++ ++++-...+.|..+++.. +.. ...+........+++.+ +++++++....+.|.++|.. +++..
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~ 246 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTI 246 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEE
Confidence 4556 7776 556666788999999874 321 12222223456789999 89988887778899999986 55432
Q ss_pred ---ecCCCCCeEEEEEc---cCCCEEEEeec
Q 011126 466 ---YTDIREIVSAVCYC---PDGKVRQNSAC 490 (493)
Q Consensus 466 ---~~~~~~~I~sv~~s---pdG~~l~s~s~ 490 (493)
.......+++++|. ||++.|+++..
T Consensus 247 ~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 247 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EeecccccCCceEEEEecccCCCCEEEEECC
Confidence 22223568999999 89887776654
No 238
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.00 E-value=0.00054 Score=66.33 Aligned_cols=188 Identities=9% Similarity=0.022 Sum_probs=110.6
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccce--------------eeecccCCEEEEEEcc-CCCEEEE
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--------------EFLAHEGSILTMKFSL-DGQYLAS 301 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~--------------~l~~H~~~I~~l~fsp-dg~~Las 301 (493)
....+++++++.++.++..++.|..|+....... .+.... ........+..|++.+ +|+ |+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV--DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE--EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE--EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 3445889999998888888999999987643211 100000 0001123578999998 564 555
Q ss_pred EECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (493)
Q Consensus 302 gs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 381 (493)
+...+.|..+|..++.. ..+...
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~-------------------------------------------------------- 119 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATS-------------------------------------------------------- 119 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESE--------------------------------------------------------
T ss_pred EECCCCEEEEeCCCCEE-EEeccc--------------------------------------------------------
Confidence 55555577777654321 111000
Q ss_pred EEEe-cCCCCEeEEEEeC-CC-eEEEEe-----------------CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCC
Q 011126 382 HEFQ-GHSSEVLDLSWSK-NG-FLLSSS-----------------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD 441 (493)
Q Consensus 382 ~~~~-~h~~~V~~l~~sp-~g-~l~sgs-----------------~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~ 441 (493)
.. ........+++.+ +| ++++-. .++.|..||..+++...........+.|+|+| ++
T Consensus 120 --~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg 196 (322)
T 2fp8_A 120 --VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DS 196 (322)
T ss_dssp --ETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TS
T ss_pred --CCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CC
Confidence 00 0012356678888 77 333322 13678888887766543333224456799999 88
Q ss_pred CEEEEE-eCCCeEEEEeCCCC---eEEEecCCCCCeEEEEEccCCCEEEEe
Q 011126 442 NYFISG-SIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 442 ~~l~sg-s~Dg~V~IWdl~~~---~~~~~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
++|+.+ ...+.|++|++.+. ....+..... ...+++.++|++.++.
T Consensus 197 ~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 197 SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEe
Confidence 855544 56789999998752 2222112233 7889999999876654
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.92 E-value=0.0016 Score=60.94 Aligned_cols=181 Identities=10% Similarity=0.109 Sum_probs=109.3
Q ss_pred ceeccCCCeEEeeecCC--eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecCCCe
Q 011126 241 ATLKPGDHELTLGQRMR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHE 317 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~~~~ 317 (493)
+.|+ ++.+..+.+.+| .|+++|..+.+.... +.- ..........+++..|.... .++.+.+||..+.+
T Consensus 48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~-------~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ-------IEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE-------EEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE-------Eec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence 6788 677777777766 899999886653221 111 11222222333455555544 58899999999999
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC-CCEeEEEE
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSW 396 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~ 396 (493)
.+.++..... ...+. .+. . ..+.......+.++++..+...........+.. ..++.+.|
T Consensus 119 ~~~ti~~~~e-G~glt--~dg-~---------------~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 119 QVRSFNYDGE-GWGLT--HND-Q---------------YLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp EEEEEECSSC-CCCEE--ECS-S---------------CEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEEECCCC-ceEEe--cCC-C---------------EEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence 9998876532 22222 111 1 111122345677777776554322111111222 34556788
Q ss_pred eCCC-eEEEEeCCCeEEEEECCCCcEEEEecC-------------CCcEEEEEEccCCCCEEEEEeCC
Q 011126 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH-------------NNYVTSVAFNPVDDNYFISGSID 450 (493)
Q Consensus 397 sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h-------------~~~V~~v~fsp~d~~~l~sgs~D 450 (493)
. +| +++..-.+..|.+.|..+++.+..+.. .+-.+.|+|+|...+++++|-.=
T Consensus 180 ~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 180 V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 7 67 555555788999999999999988862 13569999999555566666433
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.87 E-value=0.0046 Score=57.85 Aligned_cols=177 Identities=7% Similarity=0.014 Sum_probs=104.7
Q ss_pred CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecCCCeeeeeeeccC
Q 011126 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQD 326 (493)
Q Consensus 248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~~~~~~~~~~~~~ 326 (493)
.+|+.+.. +.|+.+++....... ......+......+..++|++++..|+.+. .++.|.++++....... +
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~--~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~---- 73 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKK--TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-I---- 73 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCG--GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-E----
T ss_pred cEEEEEcC-CeEEEEEecCccccc--ccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-E----
Confidence 44555543 478888876543211 000011222234578999999766665544 56788888875432100 0
Q ss_pred CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEE
Q 011126 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS 404 (493)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~s 404 (493)
+.........|++.+++ ++++
T Consensus 74 ---------------------------------------------------------~~~~~~~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 74 ---------------------------------------------------------IRQDLGSPEGIALDHLGRTIFWT 96 (267)
T ss_dssp ---------------------------------------------------------ECTTCCCEEEEEEETTTTEEEEE
T ss_pred ---------------------------------------------------------EECCCCCccEEEEEecCCeEEEE
Confidence 00112356789999864 5556
Q ss_pred EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC---CCeEEEEeCCCCeEEEe-cCCCCCeEEEEEc
Q 011126 405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVDY-TDIREIVSAVCYC 479 (493)
Q Consensus 405 gs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~IWdl~~~~~~~~-~~~~~~I~sv~~s 479 (493)
-...+.|.++++.......... .......++++| ++..|..+.. .+.|..+++.......+ .........++++
T Consensus 97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d 175 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD 175 (267)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEE
T ss_pred ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEc
Confidence 6667899999987544333333 225678999999 6555544443 47899998875432222 1223468999999
Q ss_pred cCCCEEEEeec
Q 011126 480 PDGKVRQNSAC 490 (493)
Q Consensus 480 pdG~~l~s~s~ 490 (493)
|++..|.++..
T Consensus 176 ~~~~~lyv~d~ 186 (267)
T 1npe_A 176 AFSSQLCWVDA 186 (267)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEEEC
Confidence 99887766543
No 241
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.84 E-value=0.0028 Score=59.31 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=120.0
Q ss_pred eeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126 233 RIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (493)
Q Consensus 233 ~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW 311 (493)
+..+....+++.|++. ++++...++.|...|... . ....+ .+.+ ....-.|++.+++.++++.-.++.+.++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~-v~~~i----~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-D-LIRTI----PLDF-VKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-C-EEEEE----ECSS-CSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-C-EEEEE----ecCC-CCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 3334556699999766 445577788888888762 2 12211 1122 2567788998988877776567788888
Q ss_pred ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (493)
Q Consensus 312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 391 (493)
++.....+....... + ++. ...+....
T Consensus 97 ~v~~~~~i~~~~~~~------------------------------------------~----------~~~-~~~~N~g~ 123 (255)
T 3qqz_A 97 SLTPNSEVKILKKIK------------------------------------------I----------PLQ-ESPTNCGF 123 (255)
T ss_dssp EECTTCCEEEEEEEE------------------------------------------C----------CCS-SCCCSSCC
T ss_pred EcCCCCeeeeeeeec------------------------------------------c----------ccc-cccccCCc
Confidence 876543211110000 0 000 01134557
Q ss_pred eEEEEeCCC-eEEEEeCCCeEEEEECC---CCcEEEEec--------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 392 LDLSWSKNG-FLLSSSADKTVRLWQVG---IDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~---~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
..|+|.|.+ .|+++.......||.+. ....+..+. +...+..++++|..+.+++.......|.++|..
T Consensus 124 EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 124 EGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp EEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence 899999987 66556555445555543 111222221 334578999999888888888888999999987
Q ss_pred CCeEEE---ec-CC------CCCeEEEEEccCCCEEEEe
Q 011126 460 RCQVVD---YT-DI------REIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 460 ~~~~~~---~~-~~------~~~I~sv~~spdG~~l~s~ 488 (493)
.. ++. +. +. -.....|+|.|+|+..+++
T Consensus 204 g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 204 GE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp CC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred CC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 54 443 22 11 1367899999999977664
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.80 E-value=0.0012 Score=63.54 Aligned_cols=204 Identities=14% Similarity=0.065 Sum_probs=121.3
Q ss_pred CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccC
Q 011126 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD 326 (493)
Q Consensus 247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~ 326 (493)
+..+.+++.++.|..++.. .... . .+..+...+.++...+++. |+.++.++.|..+|.. ++....+....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~-~------~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~ 176 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEK-W------RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND 176 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEE-E------EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEE-E------EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence 4567778888999999876 3211 1 1222334456667777776 5567788999999988 77665555433
Q ss_pred CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEe
Q 011126 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS 406 (493)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs 406 (493)
.....+.. .....++. ++ ..+..++.. .+.+..+......+.++...++|.|..++
T Consensus 177 ~~~~~~~~--d~~g~l~v---------------~t--~~l~~~d~~-----g~~~~~~~~~~~~~~~~~~~~~g~l~v~t 232 (330)
T 3hxj_A 177 AITSAASI--GKDGTIYF---------------GS--DKVYAINPD-----GTEKWNFYAGYWTVTRPAISEDGTIYVTS 232 (330)
T ss_dssp CCCSCCEE--CTTCCEEE---------------ES--SSEEEECTT-----SCEEEEECCSSCCCSCCEECTTSCEEEEE
T ss_pred CceeeeEE--cCCCEEEE---------------Ee--CEEEEECCC-----CcEEEEEccCCcceeceEECCCCeEEEEc
Confidence 22222211 11111111 11 333333321 11223333444668888888888777788
Q ss_pred CCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCE
Q 011126 407 ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKV 484 (493)
Q Consensus 407 ~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~ 484 (493)
.++.|..+|. ++..+..+. ....+..+.+.+ ++ .|..++.+|.|..+|. +++.+ ........+.++...++|++
T Consensus 233 ~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l 308 (330)
T 3hxj_A 233 LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI 308 (330)
T ss_dssp TTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE
T ss_pred CCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE
Confidence 8888988874 555555554 333344455654 44 5667788889999996 56655 33334556777888889987
Q ss_pred EEEe
Q 011126 485 RQNS 488 (493)
Q Consensus 485 l~s~ 488 (493)
.+.+
T Consensus 309 ~~gt 312 (330)
T 3hxj_A 309 YFGT 312 (330)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6644
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.75 E-value=4e-06 Score=83.67 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=71.1
Q ss_pred CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (493)
Q Consensus 295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (493)
++..|++++.||.|+.||..+++.+..+.. .......+..+ ....+..+.++.++.++....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~----------------g~~~v~~s~dg~l~a~d~~tG 69 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE----------------EPAFLPDPNDGSLYTLGSKNN 69 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC---------------------CCEEECTTTCCEEEC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC----------------CCEEEEeCCCCEEEEEECCCC
Confidence 577899999999999999999998877765 11111110000 011223345666777765322
Q ss_pred eecccceEEEecC------CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe
Q 011126 375 RLLEKPLHEFQGH------SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS 448 (493)
Q Consensus 375 ~~~~~~~~~~~~h------~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs 448 (493)
+. +..+..+ ..++ +..++.+++++.|+.|+.||..+++.+..+.... .+.++| ++..+++++
T Consensus 70 ~~----~w~~~~~~~~~~~~sp~----~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p-~~~~v~~~~ 137 (369)
T 2hz6_A 70 EG----LTKLPFTIPELVQASPC----RSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSP-STSLLYLGR 137 (369)
T ss_dssp CC----SEECSCCHHHHHTTCSC----C-----CCCCEEEEEEEEECCC--------------------------EEEEE
T ss_pred ce----eeeeeccCccccccCce----EecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccc-cCCEEEEEe
Confidence 21 1111111 1111 1123477788889999999999999987776433 245678 788999999
Q ss_pred CCCeEEEEeCCCCeEE
Q 011126 449 IDGKVRIWEVRRCQVV 464 (493)
Q Consensus 449 ~Dg~V~IWdl~~~~~~ 464 (493)
.|+.|+.||..+++++
T Consensus 138 ~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 138 TEYTITMYDTKTRELR 153 (369)
T ss_dssp EEEEEECCCSSSSSCC
T ss_pred cCCEEEEEECCCCCEE
Confidence 9999999999998765
No 244
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.75 E-value=0.0049 Score=57.66 Aligned_cols=183 Identities=11% Similarity=0.092 Sum_probs=111.1
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~ 320 (493)
+.|+ ++.+..+.+.+|.|+++|+.+.+..... +.. .-.--.+.+.. +++.+..-.++.+.+||..+.+.+.
T Consensus 60 L~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~------l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 60 LVFH-QGHFFESTGHQGTLRQLSLESAQPVWME------RLG-NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp EEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE------ECT-TCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred EEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE------CCC-CcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence 5666 4567777778899999998866532221 111 11112344432 2333444568899999999999999
Q ss_pred eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEEEeCC
Q 011126 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKN 399 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~ 399 (493)
++..... ...+. .+. .. .+.......+.++++..++..........+ .-..++.|.|. +
T Consensus 131 ti~~~~e-GwGLt--~Dg---------------~~-L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 131 TTRYSGE-GWGLC--YWN---------------GK-LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EEECSSC-CCCEE--EET---------------TE-EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEeCCCc-eeEEe--cCC---------------CE-EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 8876432 22222 111 11 111223567777777766543221111111 12245678887 6
Q ss_pred C-eEEEEeCCCeEEEEECCCCcEEEEecCC--------------CcEEEEEEccCCCCEEEEEeCCCe
Q 011126 400 G-FLLSSSADKTVRLWQVGIDRCLRVFSHN--------------NYVTSVAFNPVDDNYFISGSIDGK 452 (493)
Q Consensus 400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~--------------~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (493)
| +++..-.+..|.+-|..+++.+..+... +-.+.|+++|...++|+||-.=-+
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~ 258 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPR 258 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCc
Confidence 6 5555557889999999999999888521 367999999966778888754433
No 245
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.65 E-value=0.0066 Score=65.04 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=62.8
Q ss_pred EEEEeC-CC-eEEEEeCCC-----------eEEEEECCCCcEEEEe--c--CCCcEEEEEEccCCCCEEEEEeCC-----
Q 011126 393 DLSWSK-NG-FLLSSSADK-----------TVRLWQVGIDRCLRVF--S--HNNYVTSVAFNPVDDNYFISGSID----- 450 (493)
Q Consensus 393 ~l~~sp-~g-~l~sgs~Dg-----------~V~lWd~~~~~~~~~~--~--h~~~V~~v~fsp~d~~~l~sgs~D----- 450 (493)
++.|.. ++ +++.|+.++ .|.+||..+....... . ....-.++...| ++++++.|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTT
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCc
Confidence 344443 45 666776432 6888898877665543 1 222223456678 89999999865
Q ss_pred ------CeEEEEeCCCCeEEEecC---CCCCeEEEEEccCCCEEEEeec
Q 011126 451 ------GKVRIWEVRRCQVVDYTD---IREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 451 ------g~V~IWdl~~~~~~~~~~---~~~~I~sv~~spdG~~l~s~s~ 490 (493)
..+.+||..+.+...... .........+.|||++++.|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 468999998887654322 2223345567899999998874
No 246
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.56 E-value=0.0018 Score=68.50 Aligned_cols=80 Identities=9% Similarity=0.079 Sum_probs=55.2
Q ss_pred CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeE--EEEEccCCCE
Q 011126 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS--AVCYCPDGKV 484 (493)
Q Consensus 407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~--sv~~spdG~~ 484 (493)
.++.|.-||+.+++.+-.+.+..++..-.... .+.+++.|+.||.|+.||.++++++........+. -+.|..+|+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 36889999999999887776433332222222 46778889999999999999999885333333332 3677789974
Q ss_pred EEE
Q 011126 485 RQN 487 (493)
Q Consensus 485 l~s 487 (493)
.++
T Consensus 543 Yv~ 545 (582)
T 1flg_A 543 YLG 545 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 247
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.54 E-value=0.0021 Score=70.08 Aligned_cols=180 Identities=9% Similarity=0.007 Sum_probs=95.8
Q ss_pred ccceec-cCCCeEEeeec-----CCeEEEEECCCc-cccccccccceeeecccCCEEEEEEccCCCEEEEEECCC-----
Q 011126 239 GSATLK-PGDHELTLGQR-----MRRVRVHPVKKQ-SRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG----- 306 (493)
Q Consensus 239 ~~~~fs-p~g~~lasgs~-----dg~V~vwd~~~~-~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg----- 306 (493)
...+|+ |||++||.+.. ..+|+++++.+. .. +.. .+.. ....+.|+|||+.|+....|.
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~-----~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IAD-----KVSG---TNGEIVWGPDHTSLFYVTKDETLREN 247 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCC-----CEEE---ECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCc-----cccC---ceeeEEEecCCCEEEEEEECCCCCCC
Confidence 347899 99999886443 235999999866 31 110 1111 134678999999887776652
Q ss_pred cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe-
Q 011126 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ- 385 (493)
Q Consensus 307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~- 385 (493)
.|+++++.++... . ...+.
T Consensus 248 ~v~~~~lgt~~~~---------------------------------------------~---------------~lv~~~ 267 (751)
T 2xe4_A 248 KVWRHVMGKLQSE---------------------------------------------D---------------VCLYEE 267 (751)
T ss_dssp EEEEEETTSCGGG---------------------------------------------C---------------EEEEEC
T ss_pred EEEEEECCCCchh---------------------------------------------c---------------EEEEec
Confidence 3444444332100 0 00011
Q ss_pred cCCCCEeEEEEeCCC-eEEEEe---CCCeEEEEECCCC--cE-EEEe-c-CCCcEEEEEEccCCCCEEEEEeCC----Ce
Q 011126 386 GHSSEVLDLSWSKNG-FLLSSS---ADKTVRLWQVGID--RC-LRVF-S-HNNYVTSVAFNPVDDNYFISGSID----GK 452 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g-~l~sgs---~Dg~V~lWd~~~~--~~-~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~D----g~ 452 (493)
.+......+.|+|+| +|+..+ ....|.++|+.++ .. +..+ . .......+.|+. ++.+++....+ ..
T Consensus 268 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~ 346 (751)
T 2xe4_A 268 HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHK 346 (751)
T ss_dssp CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCE
T ss_pred CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcE
Confidence 122335678999999 554433 2346888898875 22 1333 2 345556666654 44444444443 36
Q ss_pred EEEEeCCC-CeEEE-ecCCCCCeEEEEEccCCCEEEEe
Q 011126 453 VRIWEVRR-CQVVD-YTDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 453 V~IWdl~~-~~~~~-~~~~~~~I~sv~~spdG~~l~s~ 488 (493)
|.++++.+ ++... +..+...+.--.+.+++..|+..
T Consensus 347 L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~ 384 (751)
T 2xe4_A 347 LLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVA 384 (751)
T ss_dssp EEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEE
T ss_pred EEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEE
Confidence 77888765 23222 23333322222344445555544
No 248
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.54 E-value=0.015 Score=53.70 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=107.8
Q ss_pred ceeccCCCeEEeeecC--CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCCcEEEEecCCCe
Q 011126 241 ATLKPGDHELTLGQRM--RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 241 ~~fsp~g~~lasgs~d--g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~ 317 (493)
+.|+. +.+..+.+.+ ..|+++|..+.+..... .+..+. .--.+.+ .+..|. ..-.++.+.+||..+.+
T Consensus 26 L~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-----~l~~~~-fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 26 LFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-----EVPPPY-FGAGIVA--WRDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp EEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-----ECCTTC-CEEEEEE--ETTEEEEEESSSSEEEEEETTTTE
T ss_pred EEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-----eCCCCc-ceeEEEE--eCCEEEEEEeeCCEEEEEECCcCc
Confidence 67776 5555665555 48999999866532211 111111 1122333 344444 44568899999999999
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEEE
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSW 396 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~ 396 (493)
.+.++..... ...+. .+. . ....+ ..+..+.++++..+...........+ .-..++.|.|
T Consensus 97 ~~~ti~~~~~-Gwglt--~dg-~--------------~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 97 PRARFRYPGE-GWALT--SDD-S--------------HLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp EEEEEECSSC-CCEEE--ECS-S--------------CEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEEeCCCC-ceEEe--eCC-C--------------EEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence 9998886532 22222 211 1 11112 23556777887766543221111111 1134567777
Q ss_pred eCCC-eEEEEeCCCeEEEEECCCCcEEEEecC--------------CCcEEEEEEccCCCCEEEEEeCCCe
Q 011126 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--------------NNYVTSVAFNPVDDNYFISGSIDGK 452 (493)
Q Consensus 397 sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h--------------~~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (493)
. +| +++..-.+..|.+.|..+++.+..+.. .+-.+.|+++|...++++||-.=.+
T Consensus 158 ~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~ 227 (243)
T 3mbr_X 158 V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPM 227 (243)
T ss_dssp E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSE
T ss_pred e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 6 56 555555788999999999999988751 1356899999966667777754443
No 249
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.47 E-value=0.0051 Score=58.97 Aligned_cols=164 Identities=14% Similarity=0.029 Sum_probs=94.5
Q ss_pred CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (493)
Q Consensus 296 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (493)
+..|..++.++.|..+|.. ++................. ..... .+.++.++.+..++.. .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~g~---------------l~vgt~~~~l~~~d~~-g- 166 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SEDGT---------------IYVGSNDNYLYAINPD-G- 166 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTTSC---------------EEEECTTSEEEEECTT-S-
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCCCE---------------EEEEcCCCEEEEECCC-C-
Confidence 4567778889999999987 6665555433222111111 10111 1122333445555543 1
Q ss_pred ecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126 376 LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (493)
Q Consensus 376 ~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (493)
+.+..+..+...+.++...+++.|..++ +.|..+| .+++.+..+. ....+.++...+ ++. |..++.++.|.
T Consensus 167 ---~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~ 238 (330)
T 3hxj_A 167 ---TEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLY 238 (330)
T ss_dssp ---CEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEE
T ss_pred ---CEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CCe-EEEEcCCCeEE
Confidence 1223333445567777787778555555 8899999 6776666554 446688888887 665 45566788898
Q ss_pred EEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN 487 (493)
Q Consensus 455 IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s 487 (493)
.+|.....+.........+.++.+.++|.+.+.
T Consensus 239 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~ 271 (330)
T 3hxj_A 239 AINPDGTEKWRFKTGKRIESSPVIGNTDTIYFG 271 (330)
T ss_dssp EECTTSCEEEEEECSSCCCSCCEECTTSCEEEE
T ss_pred EECCCCCEeEEeeCCCCccccceEcCCCeEEEe
Confidence 888544443344333333445666667765544
No 250
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.45 E-value=0.0088 Score=64.35 Aligned_cols=90 Identities=10% Similarity=0.114 Sum_probs=65.3
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEecCC--C----------cE------------------------EEEEEccCCCCEE
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFSHN--N----------YV------------------------TSVAFNPVDDNYF 444 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~--~----------~V------------------------~~v~fsp~d~~~l 444 (493)
.++.++.+|.|+++|..+++.+..+... . ++ ..++|+| +..++
T Consensus 329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~ 407 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLV 407 (677)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEE
Confidence 6888999999999999999988766411 1 11 1468889 77777
Q ss_pred EEEeC-------------------------------------------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccC
Q 011126 445 ISGSI-------------------------------------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481 (493)
Q Consensus 445 ~sgs~-------------------------------------------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spd 481 (493)
++... .|.|..||+.+++++....+..++....+..+
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~ 487 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA 487 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC
Confidence 76543 27899999999998865555555566667777
Q ss_pred CCEEEEeecC
Q 011126 482 GKVRQNSACN 491 (493)
Q Consensus 482 G~~l~s~s~d 491 (493)
|..+++++.+
T Consensus 488 g~~v~~g~~d 497 (677)
T 1kb0_A 488 GNVVFQGTAD 497 (677)
T ss_dssp TTEEEEECTT
T ss_pred CCEEEEECCC
Confidence 7777776544
No 251
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.42 E-value=0.015 Score=57.11 Aligned_cols=194 Identities=9% Similarity=0.037 Sum_probs=103.7
Q ss_pred CCeEEeeecCCeEEEEECCCccccccccccce--eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~--~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
+..+++++.++.|..+|..+....-....... .+..+..+ .. .+..++.+..++.|..+|..+++.+.....
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~----~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP----TT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC----EE--ETTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc----EE--ECCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 44677788899999999865542211000000 00111111 11 144677888899999999999988776654
Q ss_pred cCCCCce-E-EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeE
Q 011126 325 QDTDPSC-L-YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL 402 (493)
Q Consensus 325 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l 402 (493)
....... + .+.......+. ..-..+....++.+..++..... .+.... ......+... ++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~p~~---------~~~~v~~~~~~g~l~~~d~~tG~----~~w~~~--~~~~~~~~~~-~~~l 280 (376)
T 3q7m_A 217 SQATGSTEIDRLSDVDTTPVV---------VNGVVFALAYNGNLTALDLRSGQ----IMWKRE--LGSVNDFIVD-GNRI 280 (376)
T ss_dssp CC-----------CCCCCCEE---------ETTEEEEECTTSCEEEEETTTCC----EEEEEC--CCCEEEEEEE-TTEE
T ss_pred ccCCCCcccccccccCCCcEE---------ECCEEEEEecCcEEEEEECCCCc----EEeecc--CCCCCCceEE-CCEE
Confidence 3211000 0 00000000000 00111122223344444433211 111111 1223344443 3477
Q ss_pred EEEeCCCeEEEEECCCCcEEEEec-C-CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 403 LSSSADKTVRLWQVGIDRCLRVFS-H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 403 ~sgs~Dg~V~lWd~~~~~~~~~~~-h-~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
+.++.++.|..+|..+++.+.... . ...+..... .+..|+.++.+|.|+++|..+++++.
T Consensus 281 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~---~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL---YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp EEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE---ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 888889999999999999877664 1 222333333 34678888999999999999999874
No 252
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.42 E-value=0.11 Score=56.57 Aligned_cols=227 Identities=10% Similarity=0.003 Sum_probs=128.4
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
+.++...+++.+.+ |+..+-+.+|+..................-....|.+|...++|.+.+ |..+ -|.+|+..++.
T Consensus 217 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~ 293 (795)
T 4a2l_A 217 IQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDS 293 (795)
T ss_dssp EEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTE
T ss_pred eEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCe
Confidence 44455666666554 444444788887643211100000000001245799999998887554 5555 48899987765
Q ss_pred eeeeeeccCC-----CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe-------
Q 011126 318 RLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ------- 385 (493)
Q Consensus 318 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------- 385 (493)
.......... ......+..+....+.. ++..+.+..++.... ....+.
T Consensus 294 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi---------------gt~~~Gl~~~~~~~~-----~~~~~~~~~~~~~ 353 (795)
T 4a2l_A 294 FASYSSNPVENGSLSQRSVRSIFMDSQGGMWL---------------GTYFGGLNYYHPIRN-----RFKNIRNIPYKNS 353 (795)
T ss_dssp EEEECCCTTSTTSCSSSCEEEEEECTTSCEEE---------------EESSSCEEEECGGGG-----SSEEECCCTTSSS
T ss_pred EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE---------------EECCCCeEEeCCCcc-----cceEEcCCCCCCC
Confidence 4322111100 01111122222222211 111122222222110 011111
Q ss_pred cCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (493)
Q Consensus 386 ~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW 456 (493)
.....|.++...++|.|..|+.++-|..|+..++....... ....|.++...+ ++++|..|+.++-|.+|
T Consensus 354 l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp CSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEE
Confidence 12456999999888877778888889999988776544321 136799999988 78856667777779999
Q ss_pred eCCCCeEEEecC-----CCCCeEEEEEccCCCEEEEe
Q 011126 457 EVRRCQVVDYTD-----IREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 457 dl~~~~~~~~~~-----~~~~I~sv~~spdG~~l~s~ 488 (493)
|..+++...+.. ....|.++...++|.+.+..
T Consensus 433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 433 HRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp ETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred eCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence 999888765542 34579999999999876654
No 253
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.40 E-value=0.034 Score=54.56 Aligned_cols=196 Identities=11% Similarity=-0.003 Sum_probs=104.9
Q ss_pred CCCeEEeeecCCeEEEEECCCccccccccccceeee-cc--cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeee
Q 011126 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF 322 (493)
Q Consensus 246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H--~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~ 322 (493)
.+..+.+++.++.|..+|..+.+..-. ........ .+ ...+... ...++..|+.++.++.|..+|..+++.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWS-VSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEE-EECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeee-ecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 456777778889999999875543211 10000000 00 1223222 1224567888899999999999999987766
Q ss_pred eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC-----EeEEEEe
Q 011126 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE-----VLDLSWS 397 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----V~~l~~s 397 (493)
............. .-..+....++.+..++...... +..+...... .......
T Consensus 130 ~~~~~~~~~p~~~------------------~~~v~v~~~~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~ 187 (376)
T 3q7m_A 130 KVAGEALSRPVVS------------------DGLVLIHTSNGQLQALNEADGAV----KWTVNLDMPSLSLRGESAPTTA 187 (376)
T ss_dssp ECSSCCCSCCEEE------------------TTEEEEECTTSEEEEEETTTCCE----EEEEECCC-----CCCCCCEEE
T ss_pred eCCCceEcCCEEE------------------CCEEEEEcCCCeEEEEECCCCcE----EEEEeCCCCceeecCCCCcEEE
Confidence 5543211110000 00112223334444444322111 1111111100 0111122
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcE-----E---EEEEcc-CCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV-----T---SVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (493)
Q Consensus 398 p~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V-----~---~v~fsp-~d~~~l~sgs~Dg~V~IWdl~~~~~~~~ 466 (493)
++.++.+..++.|..+|..+++.+..+....+. . .+.-.| ..+..++.++.++.|..+|..+++++..
T Consensus 188 -~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~ 264 (376)
T 3q7m_A 188 -FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK 264 (376)
T ss_dssp -TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred -CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee
Confidence 457778888999999999999988776532210 0 011111 1346777888899999999999988743
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.40 E-value=0.0035 Score=67.36 Aligned_cols=78 Identities=6% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCe--EEEEEccCCCE
Q 011126 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGKV 484 (493)
Q Consensus 407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I--~sv~~spdG~~ 484 (493)
.++.|..||+.+++.+..+.+...+....+.. .+.+++.++.||.|+.||.++++++........+ .-+.|..+|+.
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence 45889999999999988776555554444555 6788899999999999999999988432222211 23455677874
Q ss_pred E
Q 011126 485 R 485 (493)
Q Consensus 485 l 485 (493)
.
T Consensus 515 y 515 (668)
T 1kv9_A 515 Y 515 (668)
T ss_dssp E
T ss_pred E
Confidence 3
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.35 E-value=0.0066 Score=63.94 Aligned_cols=82 Identities=10% Similarity=0.035 Sum_probs=56.3
Q ss_pred CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCe--EEEEEccCCCE
Q 011126 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGKV 484 (493)
Q Consensus 407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I--~sv~~spdG~~ 484 (493)
.++.|..||+.+++.+..+.+...+....+.. .+.+++.++.||.|+.||.++++++........+ ..+.|..+|+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~ 520 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence 45889999999999888876544444333333 4677777999999999999999988432222222 22446788876
Q ss_pred EEEee
Q 011126 485 RQNSA 489 (493)
Q Consensus 485 l~s~s 489 (493)
++...
T Consensus 521 yv~~~ 525 (571)
T 2ad6_A 521 YIGSM 525 (571)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65443
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.30 E-value=0.024 Score=54.49 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=59.9
Q ss_pred EeEEEEeCCC-eEE-EEeCCCeEEEEECCCCc--EEEEe-cCCCcEEEEEEccCCCCEEEEEeC----------CCeEEE
Q 011126 391 VLDLSWSKNG-FLL-SSSADKTVRLWQVGIDR--CLRVF-SHNNYVTSVAFNPVDDNYFISGSI----------DGKVRI 455 (493)
Q Consensus 391 V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~~~--~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~----------Dg~V~I 455 (493)
...|+|+|++ .|+ +-...+.|.+|++.... ....+ .... ...+++.+ +++++++... .+.|..
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~ 264 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIK 264 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEE
Confidence 4579999998 454 44667899999987521 11222 2223 78899999 8888777654 467889
Q ss_pred EeCCCCeEEE-ecCC----CCCeEEEEEccCCCEEEEe
Q 011126 456 WEVRRCQVVD-YTDI----REIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 456 Wdl~~~~~~~-~~~~----~~~I~sv~~spdG~~l~s~ 488 (493)
+|.. ++++. +... ...++.+++ .+|+++++.
T Consensus 265 ~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~ 300 (322)
T 2fp8_A 265 FDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT 300 (322)
T ss_dssp ECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred ECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence 9875 55543 3222 235677776 466555543
No 257
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.29 E-value=0.13 Score=56.18 Aligned_cols=224 Identities=8% Similarity=0.046 Sum_probs=128.8
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccc--eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~ 314 (493)
.+.++...++|.+.+ |+.. -|.+|+...... ...... ....-....|.+|...++|. |..|+.++-|..|+..
T Consensus 264 ~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 264 YIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp BEEEEEECTTSCEEE-EESS-CEEEEETTTTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred eEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 355566777776544 4444 478888654331 111000 00011345799999999887 4457777779999876
Q ss_pred CCeeeeeeeccCC-----CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe----
Q 011126 315 EHERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---- 385 (493)
Q Consensus 315 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---- 385 (493)
+.... .+..... ......+..+....+.. ++..+.+..++..... ...+.
T Consensus 339 ~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWi---------------Gt~~~Gl~~~~~~~~~-----~~~~~~~~~ 397 (795)
T 4a2l_A 339 RNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWI---------------GTNDGGLNLYNPITQR-----FTSYTLQED 397 (795)
T ss_dssp GGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEE---------------EESSSCEEEECTTTCC-----EEEECCC--
T ss_pred cccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEE---------------EECCCCeEEEcCCCCc-----EEEEecCCC
Confidence 54321 1111100 01111112222221111 1222223333332111 11111
Q ss_pred -----cCCCCEeEEEEeCCCe-EEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126 386 -----GHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (493)
Q Consensus 386 -----~h~~~V~~l~~sp~g~-l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~ 454 (493)
.....|.++...++|. |..|+.++-|.+||..+++...... ....|.++...+ ++++.+.. .+ -|.
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt-~~-Gl~ 474 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGT-LS-ALV 474 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEE-SS-CEE
T ss_pred CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEe-cC-cee
Confidence 1245799999988886 9999988889999998876544332 346799999988 77766554 44 489
Q ss_pred EEeCCCCeEEEecC-------CCCCeEEEEEccCCCEEEEee
Q 011126 455 IWEVRRCQVVDYTD-------IREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 455 IWdl~~~~~~~~~~-------~~~~I~sv~~spdG~~l~s~s 489 (493)
+||..+++...+.. ....|.++...++|++.+...
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 475 RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp EEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred EEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence 99999887765432 235799999999998776543
No 258
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.22 E-value=0.012 Score=63.41 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF 492 (493)
Q Consensus 450 Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~ 492 (493)
+|.|+.||+.+++++....+..++....+...|..+++++.|.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTS
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCC
Confidence 4789999999999885444444444446666777777776553
No 259
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.20 E-value=0.006 Score=63.63 Aligned_cols=187 Identities=10% Similarity=0.073 Sum_probs=115.2
Q ss_pred EEEEECCCcEEEEecCCCeeeeeeeccCCCCce----------E-------------------EEeeCCCCceeeeeccC
Q 011126 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC----------L-------------------YFTINHLSQLIPIDVDK 349 (493)
Q Consensus 299 Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~----------~-------------------~~~~~~~~~~~~~~~~~ 349 (493)
+.||+..|.|+|+-+.+++.+..+......+.. + .+.............+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 578899999999999999888777643322110 0 00011111111111111
Q ss_pred ccccceeeeecCCCceEEEcCCCceeecccceEEEe-cCCCCEeEEEE-e-CCC-eEEEEe------------------C
Q 011126 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSW-S-KNG-FLLSSS------------------A 407 (493)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~-s-p~g-~l~sgs------------------~ 407 (493)
..-.....+....+..+.+++...+.. ...+. .....+..+++ . |++ +++.++ .
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~----~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC----DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE----EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE----eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 122233334444555566666665443 22112 12346788888 4 887 776664 3
Q ss_pred CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC------------------------------------
Q 011126 408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG------------------------------------ 451 (493)
Q Consensus 408 Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg------------------------------------ 451 (493)
++.|.+.|..+.+.+..+.-......++++| +++++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4689999999999888887444566788999 899988888653
Q ss_pred --eEEEEeCCC--CeE-EEecCCCCCeEEEEEccCCCEEEEeec
Q 011126 452 --KVRIWEVRR--CQV-VDYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 452 --~V~IWdl~~--~~~-~~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.|.|.|..+ ++. +...........+.++|||+++++++.
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~ 296 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK 296 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECT
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCC
Confidence 377777776 433 334434456678999999999988753
No 260
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.15 E-value=0.1 Score=51.10 Aligned_cols=242 Identities=14% Similarity=0.105 Sum_probs=117.2
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC---CCEEEEEEC-C-----Cc
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE-D-----GT 307 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~-D-----g~ 307 (493)
....++|.|+|+++++ ...|+|++++ ......+..+. .+.........|+|+|+ +.+|+.+.. . ..
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 3445899999986555 4569999998 32211111110 11223456899999998 555544433 2 56
Q ss_pred EEEEecCCCee-----e-eeeec---cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 308 VRVWKVIEHER-----L-DGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 308 V~iWdl~~~~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
|..|++..+.. + ..+.. .......+.+.+++ .++...-+........ -.....+.++.++....-...
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~-d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQ-DLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGG-CTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCcccc-CCCCCceEEEEEcCCCCCCCC
Confidence 77777764321 1 11221 11123344444433 2332221111100000 001122344444332100000
Q ss_pred ---------cceEEEecCCCCEeEEEEeC-CC-eEEEEeCCCeE------EEEECCCCc------------------EEE
Q 011126 379 ---------KPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTV------RLWQVGIDR------------------CLR 423 (493)
Q Consensus 379 ---------~~~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V------~lWd~~~~~------------------~~~ 423 (493)
....-..+|. ....++|+| ++ ++++-.....+ .|.-+..+. ++.
T Consensus 184 npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 0111122332 356889999 56 43333322221 232222221 223
Q ss_pred EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe-------EEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-------VVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 424 ~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~-------~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+.+......++| . ++.++++.-..+.|...++.... ...+......+..+++.|||.++++..
T Consensus 263 ~~~~~~ap~G~~~-~-~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQGFPPGNLAF-F-RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTCCCEEEEEE-E-TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCCCCcceEE-E-CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 3333445677888 3 67777776677788888776432 122323346799999999998776653
No 261
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.11 E-value=0.016 Score=58.69 Aligned_cols=100 Identities=8% Similarity=0.170 Sum_probs=62.1
Q ss_pred CCEeEEEEeCCC-eEEEEeC-CC----eEEEEECCCCcEE--EEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 389 SEVLDLSWSKNG-FLLSSSA-DK----TVRLWQVGIDRCL--RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~-Dg----~V~lWd~~~~~~~--~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
.....|+|+++| +|+.+.. .+ .+.+.+. .+... ..+........++++|.++.++++-..+++|+.++..+
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 456788899887 4555443 21 2333332 22221 22222344567889995666666766789999999988
Q ss_pred CeEEEe--cCCCCCeEEEEEccCCCEEEEee
Q 011126 461 CQVVDY--TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 461 ~~~~~~--~~~~~~I~sv~~spdG~~l~s~s 489 (493)
+....+ .........|+|+|+|++|+++.
T Consensus 258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred CcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 765322 22234578899999999666554
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.02 E-value=0.046 Score=57.74 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=52.8
Q ss_pred CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC--CeEEEEEccCCCE
Q 011126 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE--IVSAVCYCPDGKV 484 (493)
Q Consensus 407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~--~I~sv~~spdG~~ 484 (493)
..+.|.-||+.+++.+-...+..++..-.+.. .+.++..++.||.|+.||.++++++....... ...-+.|..+|+.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcCeEEEEECCCCCEEeEecCCCCccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 45789999999999887775433322211222 56777789999999999999999884322221 2233567788874
Q ss_pred EE
Q 011126 485 RQ 486 (493)
Q Consensus 485 l~ 486 (493)
.+
T Consensus 530 yv 531 (599)
T 1w6s_A 530 YV 531 (599)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 263
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.00 E-value=0.18 Score=49.31 Aligned_cols=100 Identities=13% Similarity=0.192 Sum_probs=62.8
Q ss_pred CCEeEEEEeCCC-eEEEEeC---C------------CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCC
Q 011126 389 SEVLDLSWSKNG-FLLSSSA---D------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDG 451 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~---D------------g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg 451 (493)
...+++.+.++| ++++... | ..=+||.+..+++......-...+.|+|+| |+++|+.+ +..+
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~ 243 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISP-DGKYVYIAELLAH 243 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECT-TSSEEEEEEGGGT
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECC-CCCEEEEEeCCCC
Confidence 356788888888 4444331 1 223344443344333333445689999999 88766655 4578
Q ss_pred eEEEEeCCC-CeEE--EecCCCCCeEEEEEcc-CCCEEEEee
Q 011126 452 KVRIWEVRR-CQVV--DYTDIREIVSAVCYCP-DGKVRQNSA 489 (493)
Q Consensus 452 ~V~IWdl~~-~~~~--~~~~~~~~I~sv~~sp-dG~~l~s~s 489 (493)
+|+.|++.. +++. .........-.+++.+ +|.+.+++.
T Consensus 244 ~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 244 KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred eEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 999999863 4332 1223456788899999 599877553
No 264
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.84 E-value=0.16 Score=49.42 Aligned_cols=178 Identities=13% Similarity=0.220 Sum_probs=106.0
Q ss_pred CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC--CceEEEc--C
Q 011126 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS--DLTCVVL--P 370 (493)
Q Consensus 295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~--~ 370 (493)
...+++.....+-+.+||+ +++.+..+.. .....+.+.+. +....... ......... ...+.++ +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~-------~~l~g~~~-dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYD-------FPLNGKKV-DIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEE-------EEETTEEE-EEEEEEECSTTCCEEEEEEEC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecc-------cccCCceE-eEEEEeCCCCCCCeEEEEEEC
Confidence 4456666677788999999 8888777643 22233332221 01111110 011111222 2334343 2
Q ss_pred CCceeecccceEEEe-------cCCCCEeEEEE--eCC-C--eEEEEeCCCeEEEEECC-------CCcEEEEecCCCcE
Q 011126 371 PKVFRLLEKPLHEFQ-------GHSSEVLDLSW--SKN-G--FLLSSSADKTVRLWQVG-------IDRCLRVFSHNNYV 431 (493)
Q Consensus 371 ~~~~~~~~~~~~~~~-------~h~~~V~~l~~--sp~-g--~l~sgs~Dg~V~lWd~~-------~~~~~~~~~h~~~V 431 (493)
+... ++..+. .....+..+++ +|. + +++....++.+..|++. +.+.++.|.....+
T Consensus 108 p~~~-----~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~ 182 (355)
T 3amr_A 108 GKNG-----TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQT 182 (355)
T ss_dssp TTTC-----CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCE
T ss_pred CCCC-----ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCc
Confidence 2111 122111 11155667777 664 4 68888899999999983 44677888888889
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEeCC-----CCeEEEec---CCCCCeEEEEE--ccCCC-EEEEee
Q 011126 432 TSVAFNPVDDNYFISGSIDGKVRIWEVR-----RCQVVDYT---DIREIVSAVCY--CPDGK-VRQNSA 489 (493)
Q Consensus 432 ~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-----~~~~~~~~---~~~~~I~sv~~--spdG~-~l~s~s 489 (493)
-.+...+ ....|..+-.+.-|..++.. +++++... .....+..|++ .++|+ +|++++
T Consensus 183 EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 183 EGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp EEEEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred ceEEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 9999998 77888888898777777755 35566433 23346888877 67777 676665
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.81 E-value=0.36 Score=52.50 Aligned_cols=229 Identities=9% Similarity=0.009 Sum_probs=122.1
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCcccccccc-------ccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSL-------YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~-------~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
+.++...++|. |..|+..+-|.+++........... .......-....|.+|...++|. |..|..++-|..
T Consensus 260 i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~ 337 (781)
T 3v9f_A 260 IFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINF 337 (781)
T ss_dssp EEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEE
T ss_pred EEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEE
Confidence 44556666665 4445554557778766433111000 00000012346799999998886 555776777888
Q ss_pred EecCCCeeeeeeecc-------C-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126 311 WKVIEHERLDGFDVQ-------D-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (493)
Q Consensus 311 Wdl~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 382 (493)
++..+..... +... . .......+..+....+.. ++....+..++........- ..
T Consensus 338 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi---------------gt~~~Gl~~~~~~~~~~~~~-~~ 400 (781)
T 3v9f_A 338 ISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLWI---------------GTDGGGINVFENGKRVAIYN-KE 400 (781)
T ss_dssp ECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSCEEE---------------EEBSSCEEEEETTEEEEECC---
T ss_pred eCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCCEEE---------------EeCCCcEEEEECCCCeEEEc-cC
Confidence 9876543221 1110 0 001111111122121111 11111222232221111000 00
Q ss_pred EEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 383 ~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
........|.+|...++|.|..|+.++-|..+|..+++...... ....|.++...+ ++.+.+ |+. +-|.+||..
T Consensus 401 ~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~ 477 (781)
T 3v9f_A 401 NRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLA 477 (781)
T ss_dssp ---CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESS
T ss_pred CCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCC
Confidence 00223467999998888866678877789999988775543321 346799999887 666554 455 559999998
Q ss_pred CCeEEEecCC------CCCeEEEEEccCCCEEEEe
Q 011126 460 RCQVVDYTDI------REIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 460 ~~~~~~~~~~------~~~I~sv~~spdG~~l~s~ 488 (493)
+++...+... ...|.++...++|.+.+..
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred CCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence 8765443221 3679999999999877654
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.75 E-value=0.075 Score=57.77 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=45.7
Q ss_pred cccceeccCCCeEEeeecC-----CeEEEEECCCccccccccccceeee-cccCCEEEEEEccCCCEEEEEECC---CcE
Q 011126 238 HGSATLKPGDHELTLGQRM-----RRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGED---GTV 308 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~D---g~V 308 (493)
...++|+|||+.|+....+ ..|.++++.+....-.. .+. .+......+.|+|||++|+....+ ..|
T Consensus 223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-----v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l 297 (751)
T 2xe4_A 223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVC-----LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEV 297 (751)
T ss_dssp CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEE-----EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEE-----EEecCCCceEEEEEECCCCCEEEEEecCCCCceE
Confidence 3458999999988877665 36777887654321111 111 223446788999999988776533 245
Q ss_pred EEEecCC
Q 011126 309 RVWKVIE 315 (493)
Q Consensus 309 ~iWdl~~ 315 (493)
.++|+.+
T Consensus 298 ~~~d~~~ 304 (751)
T 2xe4_A 298 HLLDLRK 304 (751)
T ss_dssp EEEESSS
T ss_pred EEEECCC
Confidence 5566544
No 267
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.74 E-value=0.08 Score=51.06 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=70.7
Q ss_pred EeEEEE---eCCC-eEEEEe-------------CCCeEEEEECC---CCcEEEEecC--------------CCcEEEEEE
Q 011126 391 VLDLSW---SKNG-FLLSSS-------------ADKTVRLWQVG---IDRCLRVFSH--------------NNYVTSVAF 436 (493)
Q Consensus 391 V~~l~~---sp~g-~l~sgs-------------~Dg~V~lWd~~---~~~~~~~~~h--------------~~~V~~v~f 436 (493)
+..|.| .|++ ++++.. .+..|..||+. +++.+..... ....+.|+.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 367888 5777 444332 26789999999 7777655531 125889999
Q ss_pred ccCCCCEEEEEeCC-CeEEEEeCCCCeEEEec------CCCCCeEEEEEccCCCEEEEeec
Q 011126 437 NPVDDNYFISGSID-GKVRIWEVRRCQVVDYT------DIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 437 sp~d~~~l~sgs~D-g~V~IWdl~~~~~~~~~------~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.+ +|+..++++.- +.|...+.....+..+. ......+.|+++|||+.|++...
T Consensus 145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~ 204 (334)
T 2p9w_A 145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG 204 (334)
T ss_dssp CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence 99 99999999998 99888888765444321 11223779999999998887643
No 268
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.71 E-value=0.12 Score=49.88 Aligned_cols=197 Identities=9% Similarity=0.055 Sum_probs=109.6
Q ss_pred cceeccCCCeEEeee-cCCeEEEEECCCccccccccccceeeec-ccCCEEEEEE---ccCCCEEEEEEC----------
Q 011126 240 SATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKF---SLDGQYLASGGE---------- 304 (493)
Q Consensus 240 ~~~fsp~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~~-H~~~I~~l~f---spdg~~Lasgs~---------- 304 (493)
++.|++....|..++ ..++|..|+..........+... ...+ ....+..|.| .|+++++++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~-s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGA-SSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTT-CCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCc-cccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 478888666666655 78999999986432211111000 0000 0113579999 688777775431
Q ss_pred ---CCcEEEEecC---CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126 305 ---DGTVRVWKVI---EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (493)
Q Consensus 305 ---Dg~V~iWdl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 378 (493)
+..|..+|+. +++.+........ .
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~-------------------------------------------------~- 125 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKV-------------------------------------------------Q- 125 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHH-------------------------------------------------H-
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccc-------------------------------------------------c-
Confidence 5667777876 5554332221100 0
Q ss_pred cceEEEecC-CCCEeEEEEeCCC-eEEEEeCC-CeEEEEECCCCcEEEEec-------CCCcEEEEEEccCCCCEEEEEe
Q 011126 379 KPLHEFQGH-SSEVLDLSWSKNG-FLLSSSAD-KTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNYFISGS 448 (493)
Q Consensus 379 ~~~~~~~~h-~~~V~~l~~sp~g-~l~sgs~D-g~V~lWd~~~~~~~~~~~-------h~~~V~~v~fsp~d~~~l~sgs 448 (493)
+......+. .....+++..++| ..++++.- +.|...+.... .+..+. ..-..+.|+++| ++++|++..
T Consensus 126 ~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~ 203 (334)
T 2p9w_A 126 DEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFG 203 (334)
T ss_dssp HHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEES
T ss_pred ccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeC-CCCEEEEEc
Confidence 000000011 1236788888888 66667766 77666665543 222221 122367999999 998888887
Q ss_pred CCCeEEEEeCCCCeE--EEec--C---CCCCeEEE-EEccCCCEEEEee
Q 011126 449 IDGKVRIWEVRRCQV--VDYT--D---IREIVSAV-CYCPDGKVRQNSA 489 (493)
Q Consensus 449 ~Dg~V~IWdl~~~~~--~~~~--~---~~~~I~sv-~~spdG~~l~s~s 489 (493)
..|.|..+|+.+... +... + .-.....| .-..+|+.|+++.
T Consensus 204 ~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~ 252 (334)
T 2p9w_A 204 GPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGA 252 (334)
T ss_dssp SSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred CCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEc
Confidence 799999999985433 3222 2 11233443 4445788755544
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.69 E-value=0.56 Score=46.32 Aligned_cols=209 Identities=8% Similarity=-0.023 Sum_probs=109.6
Q ss_pred cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCCcEEEEecCCCee
Q 011126 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHER 318 (493)
Q Consensus 240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~~ 318 (493)
+.+..+. .+|+.+.. ..|+..+....... .+......+..|+|++.+..|+ +-...+.|+.+++.....
T Consensus 81 C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~--------~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 81 CKALGPE-PVLLFANR-IDIRQVLPHRSEYT--------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150 (386)
T ss_dssp EEECSSC-CEEEEECB-SCEEEECTTSCCCE--------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred ECCcccc-ceeEeecC-ccceeeccCCCcEE--------EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence 3334443 33444333 55777776543211 1222344588999998655554 444677899999876543
Q ss_pred eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE-EEecCCCCEeEEEEe
Q 011126 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWS 397 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~s 397 (493)
...+......+..+++.+.. ..++..+. ....+.+.+... +... .+.........|++.
T Consensus 151 ~~~~~~~~~~p~glavd~~~-g~lY~~d~--------------~~~~I~~~~~dg-----~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 151 EEVVSTGLESPGGLAVDWVH-DKLYWTDS--------------GTSRIEVANLDG-----AHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp EEEECSSCSCCCCEEEETTT-TEEEEEET--------------TTTEEEECBTTS-----CSCEEEECSSCSCEEEEEEE
T ss_pred EEEEeCCCCCccEEEEEeCC-CeEEEEcC--------------CCCeEEEEeCCC-----CceEEeecCCCCCCcEEEEE
Confidence 33332222223333332211 11222111 112222222211 1111 122234567899999
Q ss_pred CCC--eEEEEeCC-CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCC
Q 011126 398 KNG--FLLSSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI 472 (493)
Q Consensus 398 p~g--~l~sgs~D-g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~ 472 (493)
|.+ ++++-... +.|...++.......... .-...+.|+|+|..++++++=...+.|..+|+....... .......
T Consensus 211 p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 290 (386)
T 3v65_B 211 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH 290 (386)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSS
T ss_pred cCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCC
Confidence 865 44555455 788888887544333332 345688999998445555555667889999987543322 2222345
Q ss_pred eEEEEE
Q 011126 473 VSAVCY 478 (493)
Q Consensus 473 I~sv~~ 478 (493)
...|++
T Consensus 291 P~giav 296 (386)
T 3v65_B 291 PFAITV 296 (386)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 677777
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=0.59 Score=50.71 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=71.4
Q ss_pred CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEe---c-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF---S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 388 ~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~---~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
...|.++...++|.|..|+.++-|.+||..++...... . ....|.++...+ ++.+.+ |+.++-|..+|..+++.
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEEE-EETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcE
Confidence 45689999988887777776777899998765433211 1 346799999887 676555 66767799999988877
Q ss_pred EEecC---CCCCeEEEEEccCCCEEEEe
Q 011126 464 VDYTD---IREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 464 ~~~~~---~~~~I~sv~~spdG~~l~s~ 488 (493)
..+.. ....|.++...++|.+.+..
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~lwigt 467 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKKIWIGT 467 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSEEEEEE
T ss_pred EEeccCCCCCCeEEEEEECCCCCEEEEE
Confidence 65532 34679999999988766543
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.61 E-value=0.7 Score=46.47 Aligned_cols=94 Identities=9% Similarity=0.128 Sum_probs=61.0
Q ss_pred eEEEEeCCC--eEEEEeCCCeEEEEECC--CCcE--EEEe-c---------------CCCcEEEEEE---------ccCC
Q 011126 392 LDLSWSKNG--FLLSSSADKTVRLWQVG--IDRC--LRVF-S---------------HNNYVTSVAF---------NPVD 440 (493)
Q Consensus 392 ~~l~~sp~g--~l~sgs~Dg~V~lWd~~--~~~~--~~~~-~---------------h~~~V~~v~f---------sp~d 440 (493)
..|+|+|++ ++++-...+.|+.++.. ++.. ...+ . .-.....+++ .+ +
T Consensus 276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~ 354 (433)
T 4hw6_A 276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-E 354 (433)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-C
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-C
Confidence 469999998 44555667899998865 2321 1111 1 1134677999 66 7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEEEecCC------------------CCCeEEEEEc-cCCCEEEE
Q 011126 441 DNYFISGSIDGKVRIWEVRRCQVVDYTDI------------------REIVSAVCYC-PDGKVRQN 487 (493)
Q Consensus 441 ~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~------------------~~~I~sv~~s-pdG~~l~s 487 (493)
++++++-...+.|+.++. ++.+..+.+. -.....|++. ++|.++++
T Consensus 355 g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 355 YDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp EEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred CcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence 778877777889999985 5666543321 1247899999 56655544
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.57 E-value=0.25 Score=46.88 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=58.0
Q ss_pred CEeEEEEeCCC-eEEEEeC-CC-eEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe--
Q 011126 390 EVLDLSWSKNG-FLLSSSA-DK-TVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-- 462 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~-Dg-~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~-- 462 (493)
.+..|++.++| ++++... ++ .|..+|..+++...... .......++..+ ++..+++-..++.|+++|..+++
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe
Confidence 46788999988 4444433 22 46667777776544332 233445566555 55555555568999999987653
Q ss_pred EEEec---------CCCCCeEEEEEccCCCEEEEee
Q 011126 463 VVDYT---------DIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 463 ~~~~~---------~~~~~I~sv~~spdG~~l~s~s 489 (493)
+.... ..-...+.| +|||+.|+++.
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 32110 111245566 89998777664
No 273
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.55 E-value=0.15 Score=49.15 Aligned_cols=99 Identities=7% Similarity=0.075 Sum_probs=60.2
Q ss_pred CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 388 ~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
...+..+++.+++.++.++.+|.+++++...+..-..+. +...+..+.+.| ++.+++++ .+|.| ++....++
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGAL-LCSQDGGQ 280 (327)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTCE-EEESSTTS
T ss_pred CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCeE-EEeCCCCc
Confidence 446677888888855566678888777433233222221 234588999998 77776665 47766 44455443
Q ss_pred EE-Eec---CCCCCeEEEEEccCCCEEEEee
Q 011126 463 VV-DYT---DIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 463 ~~-~~~---~~~~~I~sv~~spdG~~l~s~s 489 (493)
.- ... .....+.++.|.+++++++++.
T Consensus 281 tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 281 TWQQDVDVKKVPSNFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp SCEECGGGTTSSSCCCEEEEEETTEEEEECS
T ss_pred ccEEcCccCCCCCCeEEEEEECCCceEEEcC
Confidence 22 122 2345688899987777665553
No 274
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.54 E-value=0.18 Score=53.92 Aligned_cols=72 Identities=7% Similarity=0.168 Sum_probs=53.3
Q ss_pred eEEEEeCCC-eEEEEeCCC-------------------eEEEEECCCCcEEEEec---CC-------CcEEEEEEccCCC
Q 011126 392 LDLSWSKNG-FLLSSSADK-------------------TVRLWQVGIDRCLRVFS---HN-------NYVTSVAFNPVDD 441 (493)
Q Consensus 392 ~~l~~sp~g-~l~sgs~Dg-------------------~V~lWd~~~~~~~~~~~---h~-------~~V~~v~fsp~d~ 441 (493)
..+++.|.+ +++.++.++ .|..+|..+++.+..+. |. .++....+.. ++
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G 311 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DG 311 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TT
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CC
Confidence 357888865 777776665 49999999999988775 21 2333333333 55
Q ss_pred C---EEEEEeCCCeEEEEeCCCCeEE
Q 011126 442 N---YFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 442 ~---~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
+ +|+.++.+|.++++|..+++++
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEe
Confidence 4 7899999999999999999987
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.47 E-value=0.11 Score=52.35 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=49.6
Q ss_pred CEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCC-EEEEEeCCCeEEEEeCC
Q 011126 390 EVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVR 459 (493)
Q Consensus 390 ~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~IWdl~ 459 (493)
....++++| +| ++++-...+.|..++...+.....+. .......|+|+| +++ ++++-...+.|+.++..
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCC
Confidence 346788999 66 55566677899999998765533333 334578999999 888 45555567899998765
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.40 E-value=0.78 Score=44.56 Aligned_cols=211 Identities=7% Similarity=-0.038 Sum_probs=109.2
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEEecCCC
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEH 316 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iWdl~~~ 316 (493)
..+.+..+.. +|+.+. ...|+..+....... .+......+..|+|++....|+-+ ...+.|+.+++...
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~--------~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT--------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEE--------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCCeeE--------EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence 3344444533 344333 344666666543211 122233457899999866655544 46778999988765
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE-EecCCCCEeEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLS 395 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~ 395 (493)
.....+......+..+++.... ..++..+.. ...+.+.+... +.... +.........|+
T Consensus 106 ~~~~~~~~~~~~p~glavd~~~-g~ly~~d~~--------------~~~I~~~~~dG-----~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 106 NVEEVVSTGLESPGGLAVDWVH-DKLYWTDSG--------------TSRIEVANLDG-----AHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp SCEEEECSSCSCCCEEEEETTT-TEEEEEETT--------------TTEEEEEETTS-----CSCEEEECTTCSCEEEEE
T ss_pred CceEEEeCCCCCccEEEEecCC-CeEEEEcCC--------------CCeEEEEcCCC-----CceEEEEeCCCCCcceEE
Confidence 4333222222233333332211 112222111 11222222111 11111 222345678999
Q ss_pred EeCCC--eEEEEeCC-CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCC
Q 011126 396 WSKNG--FLLSSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR 470 (493)
Q Consensus 396 ~sp~g--~l~sgs~D-g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~ 470 (493)
+.|.+ ++++-... +.|...++........+. .-...+.|+|+|..+.++++=...++|..+|+....... .....
T Consensus 166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~ 245 (349)
T 3v64_C 166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL 245 (349)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCC
Confidence 99854 55555555 788888887543333222 345678999998444455555567899999987543222 22223
Q ss_pred CCeEEEEE
Q 011126 471 EIVSAVCY 478 (493)
Q Consensus 471 ~~I~sv~~ 478 (493)
.....|++
T Consensus 246 ~~P~giav 253 (349)
T 3v64_C 246 PHPFAITV 253 (349)
T ss_dssp SSEEEEEE
T ss_pred CCceEEEE
Confidence 45677777
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.38 E-value=0.85 Score=45.25 Aligned_cols=101 Identities=9% Similarity=-0.011 Sum_probs=68.6
Q ss_pred CCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC-CCeEEEEeCCCCeEE
Q 011126 389 SEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVV 464 (493)
Q Consensus 389 ~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~~~~~~ 464 (493)
.....|++.+ .+ ++++-...+.|.+.++........+. .......|+++|..+.++.+-.. .+.|...++......
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 4567888887 44 66666778899999988665544444 44568899999944444444323 478999998765443
Q ss_pred Ee-cCCCCCeEEEEEccCCCEEEEee
Q 011126 465 DY-TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~~-~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+ ...-...+.|+++|++..|+.+-
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEE
Confidence 32 23335689999999888777653
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.30 E-value=0.8 Score=43.69 Aligned_cols=100 Identities=9% Similarity=-0.022 Sum_probs=66.1
Q ss_pred CEeEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCC-CeEEEEeCCCCeEEE
Q 011126 390 EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVVD 465 (493)
Q Consensus 390 ~V~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D-g~V~IWdl~~~~~~~ 465 (493)
....|++.+. + ++++-...+.|.+.++........+. .......++++|..+.++++.... +.|...++.......
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 3467888864 4 55666778899999987654443333 345778999999444444444333 789999887544332
Q ss_pred e-cCCCCCeEEEEEccCCCEEEEee
Q 011126 466 Y-TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 466 ~-~~~~~~I~sv~~spdG~~l~s~s 489 (493)
+ ...-...+.|+++|++..|+.+.
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEECCCCCceEEEEeccCCEEEEEE
Confidence 2 22345688999999887776654
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.23 E-value=0.095 Score=52.92 Aligned_cols=101 Identities=10% Similarity=0.175 Sum_probs=58.4
Q ss_pred CCEeEEEEeCCC-eEEEEeCC---Ce-EEEEECCCCcE-EEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 389 SEVLDLSWSKNG-FLLSSSAD---KT-VRLWQVGIDRC-LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~D---g~-V~lWd~~~~~~-~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
.....|+++++| ++++.... .. +...+...+.. ...+........++++|.++.++++-..++.|+.+|..++.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~ 261 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT 261 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence 346788888888 44444321 12 22223221111 01222334456788998566666666677899999998776
Q ss_pred EE-Ee--cCCCCCeEEEEEccCCCEEEEee
Q 011126 463 VV-DY--TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 463 ~~-~~--~~~~~~I~sv~~spdG~~l~s~s 489 (493)
+. .+ .........|+|+|+|+.|+++.
T Consensus 262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp EEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred EEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 62 22 12222345799999999666554
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.17 E-value=0.67 Score=45.74 Aligned_cols=196 Identities=7% Similarity=-0.084 Sum_probs=105.0
Q ss_pred ccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCC
Q 011126 239 GSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 239 ~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~ 316 (493)
..++|++.+. ++.+-...++|..++........ .+.........|++.+.+..| ++-...+.|.+.++...
T Consensus 119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 3478887554 44555567889999877543211 111122344678888755544 44455677888887644
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLS 395 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~ 395 (493)
.....+......+..+.+.+.. ..++..+... ...+..++.. ......+ .........|+
T Consensus 192 ~~~~l~~~~l~~P~giavdp~~-g~ly~td~~~-------------~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla 252 (386)
T 3v65_B 192 HRKVLLWQSLEKPRAIALHPME-GTIYWTDWGN-------------TPRIEASSMD-----GSGRRIIADTHLFWPNGLT 252 (386)
T ss_dssp SCEEEECSSCSCEEEEEEETTT-TEEEEEECSS-------------SCEEEEEETT-----SCSCEEEECSSCSCEEEEE
T ss_pred ceEEeecCCCCCCcEEEEEcCC-CeEEEeccCC-------------CCEEEEEeCC-----CCCcEEEEECCCCCeeeEE
Confidence 3222222222223333333222 1222222211 0122222111 1111111 12234578999
Q ss_pred EeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
|+|++ ++++-+..+.|..+|+........+. .......|++ . .+.++++-...+.|..++..+++
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-F-EDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-E-CCEEEEeeCCCCeEEEEECCCCc
Confidence 99765 55666677889999987544333333 3456778888 3 56777777778899999965554
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.05 E-value=1 Score=48.96 Aligned_cols=101 Identities=8% Similarity=-0.036 Sum_probs=68.6
Q ss_pred CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCC-CeEEEEeCCCCeEE
Q 011126 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVV 464 (493)
Q Consensus 389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D-g~V~IWdl~~~~~~ 464 (493)
.....|++.+.+ ++++-...+.|.+.++........+. .......|+++|..+.++++-... ++|.+.++......
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 345678888765 66666778899999988665444443 445688999999445455554333 78999999866554
Q ss_pred Eec-CCCCCeEEEEEccCCCEEEEee
Q 011126 465 DYT-DIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~~~-~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+. ..-...+.|++.|.+..|+.+-
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEe
Confidence 433 2335788999998877776653
No 282
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.02 E-value=0.44 Score=49.88 Aligned_cols=72 Identities=10% Similarity=-0.014 Sum_probs=41.7
Q ss_pred CCeEEeeecCCeEEEEECCCccccccccccceeeeccc--CCEEE-EEEccCCCEEEEEEC------CCcEEEEecCCCe
Q 011126 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE--GSILT-MKFSLDGQYLASGGE------DGTVRVWKVIEHE 317 (493)
Q Consensus 247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~--~~I~~-l~fspdg~~Lasgs~------Dg~V~iWdl~~~~ 317 (493)
+..+++++.++.|..+|..+.+..-.. .+..+. ..+.+ ... .++ .++.++. ++.|+.+|..+++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~-----~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEV-----EVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEE-----ECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEe-----cCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence 456777778899999988765432110 011110 01110 001 134 5555554 7999999999999
Q ss_pred eeeeeecc
Q 011126 318 RLDGFDVQ 325 (493)
Q Consensus 318 ~~~~~~~~ 325 (493)
.+..+...
T Consensus 188 ~~W~~~~~ 195 (571)
T 2ad6_A 188 LKWRAFAT 195 (571)
T ss_dssp EEEEEESS
T ss_pred EEEEEccC
Confidence 88776643
No 283
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.95 E-value=0.17 Score=51.77 Aligned_cols=101 Identities=7% Similarity=0.135 Sum_probs=61.7
Q ss_pred CCEeEEEE-------eCCC-eEEEEeCCC-------eEEEEECCC-CcEE-----EEecCCCcEEEEEEccCCCCEEEEE
Q 011126 389 SEVLDLSW-------SKNG-FLLSSSADK-------TVRLWQVGI-DRCL-----RVFSHNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 389 ~~V~~l~~-------sp~g-~l~sgs~Dg-------~V~lWd~~~-~~~~-----~~~~h~~~V~~v~fsp~d~~~l~sg 447 (493)
.....|+| +++| .|+.+...+ .|.+.+... +... ..+.-......++++|.++.++++-
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS 265 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence 35678888 8888 455554443 255665333 1211 1222112345778899556667777
Q ss_pred eCCCeEEEEeCC-------CCeE--------------EEecCCCCCeEEEEEccCCCEEEEee
Q 011126 448 SIDGKVRIWEVR-------RCQV--------------VDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 448 s~Dg~V~IWdl~-------~~~~--------------~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
..++.|+.+|+. ++.+ +...........|+|+|+|+.|+++-
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence 788899999997 5543 11222334568999999999666553
No 284
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.94 E-value=1.3 Score=43.00 Aligned_cols=242 Identities=12% Similarity=0.039 Sum_probs=117.7
Q ss_pred ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC---CCEEEEEEC----C----
Q 011126 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE----D---- 305 (493)
Q Consensus 237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~----D---- 305 (493)
....++|.|+|+++++ ...|+|++++.... ..+..+. .+.........|+|+|+ +..|+.+.. +
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G~-~~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLISPSGK-KLVASFD---VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEECSSCE-EEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEeCCCc-eEeeccc---eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 3445899999985555 45699999863322 1111111 11122456899999997 445544432 3
Q ss_pred CcEEEEecCCC--e-----ee-eeeecc-CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126 306 GTVRVWKVIEH--E-----RL-DGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (493)
Q Consensus 306 g~V~iWdl~~~--~-----~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (493)
..|..|+.... . .+ ..+... ......+.+.+++ .++...-+........ -.....+.++.++....-.
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG--~Lyvt~G~~~~~~~~~-d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG--MLYITTGDAADPRLAQ-DLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS--CEEEECCCTTCGGGGT-CTTCCSSEEEEECTTSCCC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC--cEEEEECCCCCCcccc-CCCCCCeEEEEEcCCCCCC
Confidence 46777776543 1 11 112111 1123334444433 2322211111100000 0011123344443321100
Q ss_pred ccc----ceEEEecCCCCEeEEEEeC-CCeEEEEeC--CC--eEEEEECCC----------------CcEEEEe-cCCCc
Q 011126 377 LEK----PLHEFQGHSSEVLDLSWSK-NGFLLSSSA--DK--TVRLWQVGI----------------DRCLRVF-SHNNY 430 (493)
Q Consensus 377 ~~~----~~~~~~~h~~~V~~l~~sp-~g~l~sgs~--Dg--~V~lWd~~~----------------~~~~~~~-~h~~~ 430 (493)
... ...-..+|.. ...|+|+| +|.|..+.. +. .|.+..... ..++..+ .....
T Consensus 182 ~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a 260 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA 260 (354)
T ss_dssp TTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred CCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence 000 0111234433 46899999 564443332 21 233322110 0123333 22346
Q ss_pred EEEEEEc-------cCCCCEEEEEeCCCeEEEEeCCCC-eEE---Eec-CCCCCeEEEEEccCCCEEEEe
Q 011126 431 VTSVAFN-------PVDDNYFISGSIDGKVRIWEVRRC-QVV---DYT-DIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 431 V~~v~fs-------p~d~~~l~sgs~Dg~V~IWdl~~~-~~~---~~~-~~~~~I~sv~~spdG~~l~s~ 488 (493)
...++|. . ++.++++.-..+.|...++... ++. .+. .....+..+++.|||.+.++.
T Consensus 261 p~G~~~y~g~~fp~~-~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 261 PSGASFVHGDMFPGL-RGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EEEEEECCSSSCGGG-TTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred CcceEEECCCCCccc-CCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 7788883 3 6777777777788999998753 332 232 234679999999999877665
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.94 E-value=1.2 Score=42.43 Aligned_cols=176 Identities=7% Similarity=-0.027 Sum_probs=94.0
Q ss_pred ccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCC
Q 011126 239 GSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 239 ~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~ 316 (493)
..++|++.+. ++.+-...+.|..++....... .. ....+...-.....|++.+.+..| ++-...+.|.+.++...
T Consensus 33 ~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-~~--~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 33 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SS--YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred EEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-cc--cEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4588888654 4455556789999987642100 00 000111122345678888755444 44455677877776432
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
... .+ +.........|++
T Consensus 110 ~~~-~~-------------------------------------------------------------~~~~~~~P~~iav 127 (316)
T 1ijq_A 110 KRK-TL-------------------------------------------------------------FRENGSKPRAIVV 127 (316)
T ss_dssp SEE-EE-------------------------------------------------------------EECTTCCEEEEEE
T ss_pred ceE-EE-------------------------------------------------------------EECCCCCcceEEe
Confidence 110 00 0111234578888
Q ss_pred eCCC-e-EEEEeCC-CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe---cCC
Q 011126 397 SKNG-F-LLSSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY---TDI 469 (493)
Q Consensus 397 sp~g-~-l~sgs~D-g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~---~~~ 469 (493)
.|.+ . +++.... +.|...++.......... .-...+.|+++|..++++++-...+.|..+|+.......+ ...
T Consensus 128 dp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~ 207 (316)
T 1ijq_A 128 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 207 (316)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred CCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCc
Confidence 8854 4 4444333 678888876433322222 3456889999983344445555667999999975432221 122
Q ss_pred CCCeEEEEEc
Q 011126 470 REIVSAVCYC 479 (493)
Q Consensus 470 ~~~I~sv~~s 479 (493)
......|++.
T Consensus 208 ~~~P~giav~ 217 (316)
T 1ijq_A 208 LAHPFSLAVF 217 (316)
T ss_dssp TSSEEEEEEE
T ss_pred cCCcEEEEEE
Confidence 3345677774
No 286
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.60 E-value=1.7 Score=41.61 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=60.7
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEEC--CCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~--~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
...+..+++.+++ +++.+...+..+-+|- .+-+.+ .......+..+.+.| ++.+++ ++.+|.+++++...++.-
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~-~g~~~~-~~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTP-DGRLWM-IVNGGKIAFSDPDNSENW 238 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECT-TSCEEE-EETTTEEEEEETTEEEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECC-CCCEEE-EeCCceEEEecCCCCCee
Confidence 3467788898888 5555444444444443 222232 223556788999998 777654 456888888754434432
Q ss_pred E-ec-C---CCCCeEEEEEccCCCEEEEee
Q 011126 465 D-YT-D---IREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~-~~-~---~~~~I~sv~~spdG~~l~s~s 489 (493)
. .. . ....+.++.+.|++.+++++.
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence 2 11 1 223589999999988887764
No 287
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.57 E-value=1.8 Score=41.84 Aligned_cols=196 Identities=7% Similarity=-0.086 Sum_probs=105.5
Q ss_pred ccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCC
Q 011126 239 GSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 239 ~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~ 316 (493)
..++|++.+..| .+-...+.|..++........ .+.........|++.+.+..| ++-...+.|.+.++...
T Consensus 76 ~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 76 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEeccccEEEEEeccCCceEEEecCCCCceE-------EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 347888755544 455567889888877543211 111122345688998755544 55555678999988654
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLS 395 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~ 395 (493)
.....+......+..+++.+.. ..++..+... ...+..++.. ......+ ...-.....|+
T Consensus 149 ~~~~l~~~~l~~P~~iavdp~~-g~ly~td~~~-------------~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla 209 (349)
T 3v64_C 149 HRKVLLWQSLEKPRAIALHPME-GTIYWTDWGN-------------TPRIEASSMD-----GSGRRIIADTHLFWPNGLT 209 (349)
T ss_dssp SCEEEECTTCSCEEEEEEETTT-TEEEEEECSS-------------SCEEEEEETT-----SCSCEESCCSSCSCEEEEE
T ss_pred ceEEEEeCCCCCcceEEEecCc-CeEEEeccCC-------------CCEEEEEeCC-----CCCcEEEEECCCCCcceEE
Confidence 3322222222223333333222 2222222211 0122222111 0111111 11234578999
Q ss_pred EeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
++|++ ++++-...+.|..+|+........+. .......|++ . .+.++++-...+.|..++..+++
T Consensus 210 ~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 210 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-F-EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-E-CCEEEEecCCCCeEEEEEccCCC
Confidence 99865 55566677899999987544333332 3456678888 3 56677777778889999865554
No 288
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.41 E-value=0.49 Score=47.10 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=48.9
Q ss_pred CCCCEeEEEEeCCC----eEEEEeCCCeEEEEECCCC--cEEEEec----------CCCcEEEEEEccCCCCEEEEEe--
Q 011126 387 HSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGID--RCLRVFS----------HNNYVTSVAFNPVDDNYFISGS-- 448 (493)
Q Consensus 387 h~~~V~~l~~sp~g----~l~sgs~Dg~V~lWd~~~~--~~~~~~~----------h~~~V~~v~fsp~d~~~l~sgs-- 448 (493)
...+|..+.|+|-+ .|++-..|++||+||+... ++. .+. ....|.+++|.+ ++-.|...+
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t 200 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTT 200 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECT
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecC
Confidence 36789999999965 8999999999999999852 222 222 225788999988 666555544
Q ss_pred CCCeEEEE
Q 011126 449 IDGKVRIW 456 (493)
Q Consensus 449 ~Dg~V~IW 456 (493)
..|.|+-.
T Consensus 201 ~~GDIYAl 208 (452)
T 3pbp_A 201 EGGDIFAF 208 (452)
T ss_dssp TSCEEEEE
T ss_pred CCCCEEEE
Confidence 66766543
No 289
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.39 E-value=0.78 Score=46.46 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=22.4
Q ss_pred cCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (493)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~ 316 (493)
-...+.|+|.|+|+++++--..+.|++++..++
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 345689999999987766433346777765433
No 290
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.35 E-value=0.13 Score=55.42 Aligned_cols=205 Identities=10% Similarity=-0.052 Sum_probs=104.3
Q ss_pred cccceeccCCCeEEe-eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCC
Q 011126 238 HGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 238 ~~~~~fsp~g~~las-gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~ 315 (493)
...++|++.+..|.. -...++|+.+++....... . ....+.........|++.+. ++++++-...+.|.+.++..
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~-~--~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-S--YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C-C--CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCc-c--eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 445888886655544 4456789888876411000 0 00001111123456788754 44444445567899999865
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL 394 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l 394 (493)
......+......+..+++.+... .++..++.. ...+..++... .....+ .........|
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g-~ly~td~~~-------------~~~I~~~~~dG-----~~~~~l~~~~l~~PnGl 545 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHG-FMYWTDWGT-------------PAKIKKGGLNG-----VDIYSLVTENIQWPNGI 545 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSS-CCEECCCSS-------------SCCEEBCCSSS-----CCCCEESCSSCSSCCCE
T ss_pred CceEEEEeCCCCCcceEEEccCCC-cEEEcccCC-------------CCeEEEEeCCC-----CCeeEEEeCCCCCccEE
Confidence 543333322222333333322221 112111111 01222222110 111111 1122345689
Q ss_pred EEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126 395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (493)
Q Consensus 395 ~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~ 466 (493)
+|+|++ ++++-+..+.|.++++........+. .......|++.. +.++++-...+.|..++..+++.+..
T Consensus 546 avd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 546 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp EECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceEE
Confidence 999875 55666677899999987543333322 123345566654 35666666678999999988887753
No 291
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.34 E-value=1.2 Score=46.80 Aligned_cols=71 Identities=8% Similarity=0.076 Sum_probs=49.3
Q ss_pred EEEEeCCC-eEEEEeCC----------------CeEEEEECCCCcEEEEec---CC--------CcEEEEEEc-cCCC--
Q 011126 393 DLSWSKNG-FLLSSSAD----------------KTVRLWQVGIDRCLRVFS---HN--------NYVTSVAFN-PVDD-- 441 (493)
Q Consensus 393 ~l~~sp~g-~l~sgs~D----------------g~V~lWd~~~~~~~~~~~---h~--------~~V~~v~fs-p~d~-- 441 (493)
.+++.+.. +++.+..+ ..|.-+|..+++.+-.++ |. .++. +... . ++
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~ 322 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKA 322 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-Eecccc-CCcE
Confidence 34566654 66655544 489999999999988776 21 1122 2222 3 56
Q ss_pred -CEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 442 -NYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 442 -~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
..++.++.+|.|+++|..+++++.
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEEECCCcEEEEEECCCCCEee
Confidence 577888999999999999999873
No 292
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.33 E-value=0.39 Score=44.56 Aligned_cols=105 Identities=10% Similarity=0.192 Sum_probs=77.0
Q ss_pred EEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (493)
Q Consensus 383 ~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl 458 (493)
.+.+-...+..|+|+|++ +++....++.|...|.. ++.++.+.. ....-.|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 344556689999999976 55667788999999998 888888753 35678899988 8887777667789999988
Q ss_pred CCCe---EEE---e----cCCCCCeEEEEEccCCCEEEEee
Q 011126 459 RRCQ---VVD---Y----TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 459 ~~~~---~~~---~----~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.... .+. + ...+.....|+|+|+++.|.++.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~ 139 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK 139 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE
Confidence 6533 221 1 12344569999999997776654
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.31 E-value=3 Score=45.30 Aligned_cols=159 Identities=8% Similarity=0.001 Sum_probs=85.4
Q ss_pred ccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCCcEEEEecCCC
Q 011126 239 GSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEH 316 (493)
Q Consensus 239 ~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~V~iWdl~~~ 316 (493)
..++|++.+. ++++-...++|+.+++...... . .....+.........|++.+.+..|+. -...+.|.+.++...
T Consensus 427 ~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-~--~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 427 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-S--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred EEEeecccCCeeEEeeccceeEEEEeccCCCCC-c--ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 3477887544 4455556678888887643210 0 001112223345667888876655544 445667777776432
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 396 (493)
.... + +.........|++
T Consensus 504 ~~~~-l-------------------------------------------------------------~~~~l~~P~gIaV 521 (791)
T 3m0c_C 504 KRKT-L-------------------------------------------------------------FRENGSKPRAIVV 521 (791)
T ss_dssp SEEE-E-------------------------------------------------------------EECTTCCEEEEEE
T ss_pred eEEE-E-------------------------------------------------------------EeCCCCCcceEEE
Confidence 2110 0 0112234677888
Q ss_pred eCC-Ce-EEEEeC-CCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 397 SKN-GF-LLSSSA-DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 397 sp~-g~-l~sgs~-Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
.|. |+ +++-.. .+.|...++........+. .-...+.|+++|..++++++=...++|...++....
T Consensus 522 Dp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 522 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 876 43 333323 2678887876544433333 335788889987344444444456788888887543
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.23 E-value=2.7 Score=41.61 Aligned_cols=203 Identities=9% Similarity=-0.053 Sum_probs=107.3
Q ss_pred cccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCC
Q 011126 238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIE 315 (493)
Q Consensus 238 ~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~ 315 (493)
...++|++.+..| .+-...+.|+.++........ .....+.........|++.+. +++.++-...+.|.+.++..
T Consensus 114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~---~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------C---CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC---cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 3458898865544 444567888888876422100 001112223456788999884 44445555678899998875
Q ss_pred CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEE
Q 011126 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL 394 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l 394 (493)
......+......+..+++.+.. ..++..++... ..+...+.. ......+ ...-.....|
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~-------------~~I~~~~~d-----G~~~~~~~~~~l~~P~gl 251 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTP-------------AKIKKGGLN-----GVDIYSLVTENIQWPNGI 251 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSS-------------CCEEEEETT-----SCSCEEEECSSCSCEEEE
T ss_pred CceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCC-------------CEEEEEeCC-----CCccEEEEECCCCceEEE
Confidence 54433333222233333333222 12222222111 111111111 1111111 2233567899
Q ss_pred EEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 395 ~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
++++.+ ++++-...+.|...|+.......... .......|++. .+.++++-...+.|..+|..+++.+
T Consensus 252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 252 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred EEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCce
Confidence 999866 44555667899999987544333332 23456677773 4567777777788999997666433
No 295
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.09 E-value=0.41 Score=47.65 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=53.1
Q ss_pred cccceeccCCCeEEeeecCCeEEEEECCCccccccc-----cccceeeec------ccCCEEEEEEcc---CCCEEEEEE
Q 011126 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-----LYTGQEFLA------HEGSILTMKFSL---DGQYLASGG 303 (493)
Q Consensus 238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~-----~~~~~~l~~------H~~~I~~l~fsp---dg~~Lasgs 303 (493)
+..+..+|+|.+||..+. ..|.|-.+......... ......+.- ...+|..+.|+| .+..|++-.
T Consensus 68 i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 68 TFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred eeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 344889999999998754 57888887732211110 001112221 357899999999 466899999
Q ss_pred CCCcEEEEecCC
Q 011126 304 EDGTVRVWKVIE 315 (493)
Q Consensus 304 ~Dg~V~iWdl~~ 315 (493)
.|++||+||+..
T Consensus 147 sD~~Ir~yDl~~ 158 (452)
T 3pbp_A 147 EDDTITMFDILN 158 (452)
T ss_dssp TTSCEEEEETTC
T ss_pred cCCEEEEEEccc
Confidence 999999999975
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.96 E-value=0.57 Score=45.74 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=53.7
Q ss_pred CCEeEEEEeCC----CeE-EEEeC---C----CeEEEEECCCC-------cEE-EEec--CCCcEEEEEEccCCCCEEEE
Q 011126 389 SEVLDLSWSKN----GFL-LSSSA---D----KTVRLWQVGID-------RCL-RVFS--HNNYVTSVAFNPVDDNYFIS 446 (493)
Q Consensus 389 ~~V~~l~~sp~----g~l-~sgs~---D----g~V~lWd~~~~-------~~~-~~~~--h~~~V~~v~fsp~d~~~l~s 446 (493)
.....|+++|+ +.| ++-+. + ..|..|+.... +.+ ..+. .......|.|.| ++.++++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt 151 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT 151 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence 45678888886 433 33321 2 56666766543 111 1122 112346799999 8987777
Q ss_pred EeC-------------CCeEEEEeCCCC---------eEEEecCCCCCeEEEEEcc-CCCEEEE
Q 011126 447 GSI-------------DGKVRIWEVRRC---------QVVDYTDIREIVSAVCYCP-DGKVRQN 487 (493)
Q Consensus 447 gs~-------------Dg~V~IWdl~~~---------~~~~~~~~~~~I~sv~~sp-dG~~l~s 487 (493)
-+. .|+|.-++.... ..+...++. ....++|+| +|+++++
T Consensus 152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVAT 214 (354)
T ss_dssp CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEE
T ss_pred ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEE
Confidence 442 256666665432 112223333 346799999 6776654
No 297
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.89 E-value=0.099 Score=55.80 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=50.4
Q ss_pred EeEEEEeCCC-eEEEEe-CCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEe-CC-----CeEEEEeCCC
Q 011126 391 VLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGS-ID-----GKVRIWEVRR 460 (493)
Q Consensus 391 V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs-~D-----g~V~IWdl~~ 460 (493)
...+++..++ +++.|+ .+..+.+||..+.+....-. ..-.-.++++.+ ++++++.|+ .+ ..+.+||..+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCC
Confidence 3456777878 677776 45689999998775543322 111223455667 889999998 44 5699999998
Q ss_pred CeEEEe
Q 011126 461 CQVVDY 466 (493)
Q Consensus 461 ~~~~~~ 466 (493)
.+....
T Consensus 324 ~~W~~~ 329 (656)
T 1k3i_A 324 KTWTSL 329 (656)
T ss_dssp TEEEEE
T ss_pred CcceeC
Confidence 875543
No 298
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.88 E-value=1.1 Score=43.45 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=26.0
Q ss_pred ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~ 317 (493)
.-..-+.|+|.|||.++++--..|.|++++...++
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence 34567899999999977765548889888754443
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.83 E-value=0.66 Score=45.17 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=21.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126 285 GSILTMKFSLDGQYLASGGEDGTVRVWK 312 (493)
Q Consensus 285 ~~I~~l~fspdg~~Lasgs~Dg~V~iWd 312 (493)
..-+.|+|.|+|++++ +..+|.|++++
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE
Confidence 3567999999998555 46678888887
No 300
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.54 E-value=3.4 Score=39.42 Aligned_cols=196 Identities=6% Similarity=-0.104 Sum_probs=104.3
Q ss_pred cceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EEEEEECCCcEEEEecCCCe
Q 011126 240 SATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHE 317 (493)
Q Consensus 240 ~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl~~~~ 317 (493)
.+.|++.+ .+..+-...+.|..++........ ..+...-.....|++.+.+. ++++-...+.|.++++....
T Consensus 39 ~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~------~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 39 AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC------EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEccCCCceE------EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 47888754 455555667889988876542110 01112223466788987544 44555567789999986543
Q ss_pred eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEE
Q 011126 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSW 396 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~ 396 (493)
....+......+..+.+.+.. ..++..+.. ....+...+.. .+....+ ...-.....|++
T Consensus 113 ~~~l~~~~~~~P~giavdp~~-g~ly~td~~-------------~~~~I~r~~~d-----G~~~~~~~~~~l~~Pnglav 173 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSS-GFMYWTDWG-------------EVPKIERAGMD-----GSSRFIIINSEIYWPNGLTL 173 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGG-TEEEEEECS-------------SSCEEEEEETT-----SCSCEEEECSSCSCEEEEEE
T ss_pred EEEEEeCCCCCccEEEEeCCC-CEEEEEecC-------------CCCEEEEEEcC-----CCCeEEEEECCCCCccEEEE
Confidence 222222222223333333221 112221111 01112221111 0111111 122345689999
Q ss_pred eCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 397 SKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 397 sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
++++ ++++-+..+.|..+|+........+. .......+++.. +.++.+-...+.|..++..+++
T Consensus 174 d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 174 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred eccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence 9865 55566677899999987543322222 345567788753 4666676677899999987664
No 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.30 E-value=1.5 Score=42.75 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=51.2
Q ss_pred CCeEEEEECCCC-c---EEEEec--CCCcEEEEEEccCCCCEEEEEeC-----------------CCeEEEEeCCCCeEE
Q 011126 408 DKTVRLWQVGID-R---CLRVFS--HNNYVTSVAFNPVDDNYFISGSI-----------------DGKVRIWEVRRCQVV 464 (493)
Q Consensus 408 Dg~V~lWd~~~~-~---~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~-----------------Dg~V~IWdl~~~~~~ 464 (493)
+.+|.||++... . .+..+. .-...+.+.+.| +++++++... .|.|+-+|.. ++.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE
Confidence 467778776543 2 222333 235688999999 8988887651 2556666653 332
Q ss_pred EecCCCCCeEEEEEccCCCEEEEeec
Q 011126 465 DYTDIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
.....-...+.|+|+|||+.|+++.+
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt 240 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAEL 240 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred EeecCCcccCcceECCCCCEEEEEeC
Confidence 22333346799999999998887754
No 302
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.19 E-value=0.7 Score=45.00 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126 285 GSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (493)
Q Consensus 285 ~~I~~l~fspdg~~Lasgs~Dg~V~iWdl 313 (493)
...+.|+|.|+|++|+.+...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 35689999999983445567788888874
No 303
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=93.95 E-value=4.5 Score=38.54 Aligned_cols=198 Identities=7% Similarity=-0.016 Sum_probs=100.3
Q ss_pred CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCCeeee-eeeccCCCCceEE
Q 011126 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLY 333 (493)
Q Consensus 256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~~~~~-~~~~~~~~~~~~~ 333 (493)
...|+..++........ .+......+..|.|.+.+..| .+-...+.|..+++....... .+......+..++
T Consensus 12 ~~~I~~i~l~~~~~~~~------~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEEEEETTCTTSCCE------EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred cCeEEEEECCCCceEEE------EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 46788888875432111 111122356789999865544 444567789889886653211 1111112222333
Q ss_pred EeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEeCC-CeEEEEe--CCC
Q 011126 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKN-GFLLSSS--ADK 409 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~-g~l~sgs--~Dg 409 (493)
+.... ..++..+. ....+.+++... .....+ .........|++.|. |.|+.+. ..+
T Consensus 86 vd~~~-g~ly~~d~--------------~~~~I~~~~~dG-----~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~ 145 (318)
T 3sov_A 86 CDWLG-EKLYWTDS--------------ETNRIEVSNLDG-----SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVP 145 (318)
T ss_dssp EETTT-TEEEEEET--------------TTTEEEEEETTS-----CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSC
T ss_pred EEcCC-CeEEEEEC--------------CCCEEEEEECCC-----CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCC
Confidence 32111 11111111 112222222211 111111 233456789999986 4444333 357
Q ss_pred eEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEc
Q 011126 410 TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC 479 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~s 479 (493)
.|...++.......... .-...+.|+|+|..++++++=+..+.|..+|+....... ..........+++.
T Consensus 146 ~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~ 217 (318)
T 3sov_A 146 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF 217 (318)
T ss_dssp EEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred EEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence 88888876433322222 335678999999344444555567899999997543222 22233445666664
No 304
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.77 E-value=5.2 Score=38.69 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=44.2
Q ss_pred cCCCcEEEEEEccC------CCCEEEEEeCCCeEEEEeCCCCeEEE---e-cCCCCCeEEEEEccCCCEEEEe
Q 011126 426 SHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRCQVVD---Y-TDIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 426 ~h~~~V~~v~fsp~------d~~~l~sgs~Dg~V~IWdl~~~~~~~---~-~~~~~~I~sv~~spdG~~l~s~ 488 (493)
.+...+..+.|... ++.+|++.-..+.|...++..++.+. + ......+..+++.|||.+.++.
T Consensus 268 ~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 268 KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 34456778888641 46777777778888888887765442 2 2334579999999999977653
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=93.63 E-value=0.45 Score=51.15 Aligned_cols=74 Identities=4% Similarity=0.007 Sum_probs=47.1
Q ss_pred CCEeEEEEeCCC--eEEEEeCC-CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 389 SEVLDLSWSKNG--FLLSSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 389 ~~V~~l~~sp~g--~l~sgs~D-g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
.....|++.|.+ ++++-... +.|.+.++........+. .-...+.|+|+|..++++++-...++|.++++....
T Consensus 496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 573 (699)
T ss_dssp CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence 446788999864 44443333 678877775433222222 234567899999456666666677899999997543
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.56 E-value=5.5 Score=38.27 Aligned_cols=223 Identities=11% Similarity=0.154 Sum_probs=117.8
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC-eee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERL 319 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~-~~~ 319 (493)
.-.+|..+.+|.-. ..++.|+|++.+.+..+ +. ....|.-=+|-.+ +.|+-... ..|+-|++... .+.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks-------~~-~~e~VvfWkWis~-~~L~lVT~-taVyHWs~~~~s~P~ 140 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA-------HT-MTDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPV 140 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEE-------EE-CSSCEEEEEECSS-SEEEEEES-SEEEEEESSTTCCCE
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcc-------ee-cCCccEEEEecCC-CeEEEEcC-CcEEEEcccCCCCCc
Confidence 45688888887765 68899999986553221 11 1356777777644 45555543 47999999643 333
Q ss_pred eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
+.+..+..-.. .+++.+..+.........--...++.+ .-....+....+.-+.+.||......+....+
T Consensus 141 kvFdR~~~L~~---------~QIInY~~d~~~kW~~l~GI~~~~~~v-~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~ 210 (365)
T 2xzh_A 141 KMFDRHSSLAG---------CQIINYRTDAKQKWLLLTGISAQQNRV-VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGN 210 (365)
T ss_dssp EEEECCGGGTT---------CEEEEEEECTTSCEEEEEEEEEETTEE-EEEEEEEETTTTEEEEECCSEEEEEEECCTTC
T ss_pred eeeecchhccc---------ceEEEEEECCCCCEEEEEeEeccCCcc-ceeEEEEeecccccceeeeeeeeeEEEecCCC
Confidence 33433322111 122222222221111110000011111 11112222333445667777665444433221
Q ss_pred --C--eEEEEeC---CCeEEEEECCCC---c------EEEEe-c---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 400 --G--FLLSSSA---DKTVRLWQVGID---R------CLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 400 --g--~l~sgs~---Dg~V~lWd~~~~---~------~~~~~-~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
. +++.+.. .+.++|-++... . .+..+ . ..+...++..++ ...++..-+.-|.|++||+.
T Consensus 211 ~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDle 289 (365)
T 2xzh_A 211 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLE 289 (365)
T ss_dssp SSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcc
Confidence 1 3333322 258899988543 1 11111 1 357778899999 77888888999999999999
Q ss_pred CCeEEEe-cCCCCCeEEEEEccCCCEE
Q 011126 460 RCQVVDY-TDIREIVSAVCYCPDGKVR 485 (493)
Q Consensus 460 ~~~~~~~-~~~~~~I~sv~~spdG~~l 485 (493)
++.++.. .-..++|-.-+.+.....+
T Consensus 290 Tgt~i~~nrIS~d~iF~ta~~~~~~Gi 316 (365)
T 2xzh_A 290 TGTCIYMNRISGETIFVTAPHEATAGI 316 (365)
T ss_dssp TCCEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred cCcEEEEeccCCCceEEecccCCCCcE
Confidence 9988743 3334455444444443333
No 307
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.43 E-value=1 Score=46.03 Aligned_cols=67 Identities=9% Similarity=0.054 Sum_probs=46.1
Q ss_pred eEEEEeCC-C-eEEEEeCCCeEEEEECC-------CCcE--------------EEEecCCCcEEEEEEccCCCCE-EEEE
Q 011126 392 LDLSWSKN-G-FLLSSSADKTVRLWQVG-------IDRC--------------LRVFSHNNYVTSVAFNPVDDNY-FISG 447 (493)
Q Consensus 392 ~~l~~sp~-g-~l~sgs~Dg~V~lWd~~-------~~~~--------------~~~~~h~~~V~~v~fsp~d~~~-l~sg 447 (493)
..++.+|+ + ++++-..++.|..+|+. ++.. +...........|+|+| ++++ +++=
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD 328 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGV 328 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEE
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEe
Confidence 46788995 4 66677788899999987 4443 11222345568999999 8885 4555
Q ss_pred eCCCeEEEEeCC
Q 011126 448 SIDGKVRIWEVR 459 (493)
Q Consensus 448 s~Dg~V~IWdl~ 459 (493)
.....|+.++..
T Consensus 329 ~~~h~I~kid~d 340 (496)
T 3kya_A 329 INNHYFMRSDYD 340 (496)
T ss_dssp TTTTEEEEEEEE
T ss_pred CCCCEEEEEecC
Confidence 567889986543
No 308
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.36 E-value=0.73 Score=41.67 Aligned_cols=94 Identities=7% Similarity=-0.020 Sum_probs=57.0
Q ss_pred EeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEE------ec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV------FS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (493)
Q Consensus 391 V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~------~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~ 462 (493)
..++.|.|+|.|... .||.|.-++-.+...... +. -=..+..|.|.| ++.+.+.. |+.++-+......
T Consensus 90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence 468889999955544 569888777543222111 11 114679999999 89887776 8886555444222
Q ss_pred EEE-------ec-CCCCCeEEEEEccCCCEEEEe
Q 011126 463 VVD-------YT-DIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 463 ~~~-------~~-~~~~~I~sv~~spdG~~l~s~ 488 (493)
-.. +. ..-....-+.|.|+|.+.++.
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 111 11 222234457799999887765
No 309
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.25 E-value=1.4 Score=46.04 Aligned_cols=26 Identities=4% Similarity=-0.043 Sum_probs=19.7
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEec
Q 011126 401 FLLSSSADKTVRLWQVGIDRCLRVFS 426 (493)
Q Consensus 401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~ 426 (493)
.++.++.+|.++++|..+++.+..+.
T Consensus 338 ~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 338 ATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCceEEEEECCCCCEecccc
Confidence 56677888888888888888776554
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.67 E-value=9 Score=38.30 Aligned_cols=224 Identities=12% Similarity=0.159 Sum_probs=119.7
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC-eee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERL 319 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~-~~~ 319 (493)
.-.+|..+.+|.-. ..++.|+|++...+..+ +. ....|.-=+|-.+ +.|+-.. +..|+-|++... .+.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks-------~~-~~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~ 139 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA-------HT-MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPV 139 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEE-------EE-CSSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcc-------ee-cCCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCch
Confidence 45688888777764 68899999986553221 11 1245666677544 3555554 457999999643 333
Q ss_pred eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
+.+..+..-.. .+++.+..+.........--...++.+ .-....+....+.-+.+.||......+....+
T Consensus 140 kvFdR~~~L~~---------~QIInY~~d~~~kW~~l~GI~~~~~~v-~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~ 209 (494)
T 1bpo_A 140 KMFDRHSSLAG---------CQIINYRTDAKQKWLLLTGISAQQNRV-VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGN 209 (494)
T ss_dssp EEEECCGGGTT---------CEEEEEEECTTSSEEEEEEEEEETTEE-EEEEEEEESTTCCEEEECCSEEEEEEEECTTC
T ss_pred hheecchhccc---------ceEEEEEECCCCCeEEEEeecccCCcc-cceEEEeeccccccchheeeeeeeEEEecCCC
Confidence 33333322111 222222222221111111000011111 11122233334456677888766555444322
Q ss_pred C----eEEEEeCC---CeEEEEECCCC---------cEEEEe-c---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 400 G----FLLSSSAD---KTVRLWQVGID---------RCLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 400 g----~l~sgs~D---g~V~lWd~~~~---------~~~~~~-~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
. ++..+... +.++|-++... +.+..+ . ..+...++..++ ...++..-+.-|.|++||+.
T Consensus 210 ~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDle 288 (494)
T 1bpo_A 210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLE 288 (494)
T ss_dssp SSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecc
Confidence 1 34444432 78999998543 111111 1 356778999999 77888888999999999999
Q ss_pred CCeEEEe-cCCCCCeEEEEEccCCCEEE
Q 011126 460 RCQVVDY-TDIREIVSAVCYCPDGKVRQ 486 (493)
Q Consensus 460 ~~~~~~~-~~~~~~I~sv~~spdG~~l~ 486 (493)
++..+.. .-..++|-.-+.+.....++
T Consensus 289 Tgt~i~~nrIs~~~iF~t~~~~~~~Gi~ 316 (494)
T 1bpo_A 289 TGTCIYMNRISGETIFVTAPHEATAGII 316 (494)
T ss_dssp TCCEEEEEECCSSCEEEEEEETTTTEEE
T ss_pred cceeeeeecccCCceEEecccCCCCcEE
Confidence 9988742 33344454444444433333
No 311
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.64 E-value=0.11 Score=47.12 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=61.0
Q ss_pred CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCc--------EEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY--------VTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (493)
Q Consensus 389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~--------V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~ 460 (493)
..+.+|+|+|+|.|... .++.+.-.+..+.....-+..... ..++.|.| ++.+.++ .||+|+-++..+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 36779999998855554 667665555544222111111112 47899999 8888877 569999888754
Q ss_pred CeEEEec--------CCCCCeEEEEEccCCCEEEEe
Q 011126 461 CQVVDYT--------DIREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 461 ~~~~~~~--------~~~~~I~sv~~spdG~~l~s~ 488 (493)
..-..|. .-=..+..|.+.|+|.+.++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 3211111 011357999999999988776
No 312
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=92.52 E-value=11 Score=39.56 Aligned_cols=198 Identities=7% Similarity=-0.112 Sum_probs=101.4
Q ss_pred ccceeccCCCeEEe-eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCCcEEEEecCCC
Q 011126 239 GSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEH 316 (493)
Q Consensus 239 ~~~~fsp~g~~las-gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~V~iWdl~~~ 316 (493)
..++|++.+..|.. -...++|..++........ ..+...-.....|++.+.+..|+. -...+.|.+.++...
T Consensus 43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~------~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC-----CE------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE------EEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 34788886665554 4456788888876442100 012222256889999996655544 456788999998654
Q ss_pred eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEE
Q 011126 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLS 395 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~ 395 (493)
.....+......+..+++.+... .++..++... ..+..... .......+ ...-.....|+
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g-~ly~tD~g~~-------------~~I~r~~~-----dG~~~~~l~~~~~~~P~Gla 177 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSG-FMYWTDWGEV-------------PKIERAGM-----DGSSRFIIINSEIYWPNGLT 177 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTT-EEEEEECSSS-------------CEEEEEET-----TSCSCEEEECSSCSSEEEEE
T ss_pred CEEEEEeCCCCCCceEEEecCCC-eEEEeccCCC-------------CEEEEEEC-----CCCceEEEEeCCCCCCcEEE
Confidence 43222222333344444433321 2222222211 01111100 00111111 12334678999
Q ss_pred EeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
+.+.+ ++++-...+.|...|+.......... .......|++.. + .++++-...+.|...|..+++.
T Consensus 178 ld~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~-~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 178 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-D-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS-S-EEEEECTTTCSEEEEESSSCCC
T ss_pred EEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC-C-EEEEecCCCCEEEEEECCCCcc
Confidence 99865 55555667889999887543332222 222334677765 3 5555555678899999877653
No 313
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=92.40 E-value=8.3 Score=37.30 Aligned_cols=195 Identities=11% Similarity=0.154 Sum_probs=104.7
Q ss_pred cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC----CC---EEEEEE-C--CCcEEEEecC
Q 011126 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQ---YLASGG-E--DGTVRVWKVI 314 (493)
Q Consensus 245 p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~---~Lasgs-~--Dg~V~iWdl~ 314 (493)
|...+++...+.+-+.|||+.... +. .+.. +.++.+..-|+ |+ ++++.. . +++|++|++.
T Consensus 38 p~~s~ii~t~k~~gL~Vydl~G~~--l~------~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSLDGKM--LH------SYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GGGCEEEEEETTTEEEEEETTSCE--EE------EECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred CCccEEEEEcCCCCEEEEcCCCcE--EE------EccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 344566666678899999995433 21 1221 45666666653 33 223333 3 5789999873
Q ss_pred --CCeeeeeeec-------cCCCCceEEEeeCC-CCceeeeeccCccccceeeeecCCCceEEEcCC---Cceeecccce
Q 011126 315 --EHERLDGFDV-------QDTDPSCLYFTINH-LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP---KVFRLLEKPL 381 (493)
Q Consensus 315 --~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~~~~~~~ 381 (493)
++. +..+.. ....+..+++-... ...+..+.. ..++.+..|.. .......+.+
T Consensus 108 p~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~-------------~k~G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 108 GKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT-------------GKEGEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp TTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE-------------CSSSEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEE-------------CCCCeEEEEEEEeCCCCcccceEE
Confidence 332 333311 10223323321111 121111111 11222222211 1111233456
Q ss_pred EEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECC-----CCcEEEEec---CCCcEEEEEEccC-CCC-EEEEEe-C
Q 011126 382 HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-----IDRCLRVFS---HNNYVTSVAFNPV-DDN-YFISGS-I 449 (493)
Q Consensus 382 ~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~-----~~~~~~~~~---h~~~V~~v~fsp~-d~~-~l~sgs-~ 449 (493)
+++... +.+..+...+.. .|+.+-.+.-|..++.. +++.+..+. ....+..|++-+. +++ ||++.+ .
T Consensus 174 R~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 174 RAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp EEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred EEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 666653 467888888765 99999999777777754 345665554 2246888888431 444 666666 6
Q ss_pred CCeEEEEeCC-CCeEE
Q 011126 450 DGKVRIWEVR-RCQVV 464 (493)
Q Consensus 450 Dg~V~IWdl~-~~~~~ 464 (493)
+.++.|||.. +.+.+
T Consensus 253 ~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 253 NSSYAIYDRQGKNKYV 268 (355)
T ss_dssp GTEEEEEESSTTCCEE
T ss_pred CCEEEEEECCCCCcEE
Confidence 7899999997 55554
No 314
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.32 E-value=18 Score=41.01 Aligned_cols=100 Identities=9% Similarity=0.076 Sum_probs=62.1
Q ss_pred CEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEE--EEecCCCcEEEEEEccCC-----CCEEEEEeC-CCeEEEEeCCCC
Q 011126 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCL--RVFSHNNYVTSVAFNPVD-----DNYFISGSI-DGKVRIWEVRRC 461 (493)
Q Consensus 390 ~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~--~~~~h~~~V~~v~fsp~d-----~~~l~sgs~-Dg~V~IWdl~~~ 461 (493)
.|...+.+.. +++.++ .+.+.++.+..+... ........|.|+++.|.. .++++.|.. |++|+|+++.+.
T Consensus 515 ~I~~As~n~~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 515 NISVASCNSS-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp CCCEEEECSS-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEEeCCC-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 4666555433 444444 577888877655332 222356789999998732 479999997 999999999987
Q ss_pred eEEEecCC--CCCeEEEEEcc--CCCEEEEeecC
Q 011126 462 QVVDYTDI--REIVSAVCYCP--DGKVRQNSACN 491 (493)
Q Consensus 462 ~~~~~~~~--~~~I~sv~~sp--dG~~l~s~s~d 491 (493)
+.+..... ...+.++++.. ...+|.+|-.|
T Consensus 593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d 626 (1158)
T 3ei3_A 593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD 626 (1158)
T ss_dssp CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCC
Confidence 76643222 23555555542 22355555444
No 315
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=92.16 E-value=13 Score=39.00 Aligned_cols=101 Identities=7% Similarity=-0.049 Sum_probs=66.6
Q ss_pred CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCCCeEE
Q 011126 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV 464 (493)
Q Consensus 389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~~~~~ 464 (493)
.....|++.+.+ ++++-...+.|.+.++........+ ..-.....|++.|..+.++++-- ..+.|...++......
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 356789998854 5666677889999998765443333 34456778999994454555532 2467888887754333
Q ss_pred Ee-cCCCCCeEEEEEccCCCEEEEee
Q 011126 465 DY-TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~~-~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+ ...-...+.|+++|+++.|+.+-
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEe
Confidence 22 22345679999999877776653
No 316
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=91.64 E-value=15 Score=38.61 Aligned_cols=205 Identities=6% Similarity=-0.034 Sum_probs=106.9
Q ss_pred eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCCcEEEEecCCCeeeeeeeccCC
Q 011126 249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEHERLDGFDVQDT 327 (493)
Q Consensus 249 ~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~V~iWdl~~~~~~~~~~~~~~ 327 (493)
+|+.+ ....|+..++........ + . + ..-..+..|+|++.+..|+- -..++.|+.+++........+.....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~-~-~---~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~ 80 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVA-I-P---L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD 80 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEE-C-C---C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred EEEEE-eCCcEEEEECCCCCcceE-E-E---c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence 34443 567788888875432110 0 0 1 12346789999996666554 44678898888865433222322222
Q ss_pred CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEeCC-CeE-EE
Q 011126 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKN-GFL-LS 404 (493)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~-g~l-~s 404 (493)
.+..+++.... ..++..+.. ...+.+.+.. .+....+ .........|++.|. |.| .+
T Consensus 81 ~P~GlAvD~~~-~~LY~tD~~--------------~~~I~v~~~d-----G~~~~~l~~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 81 YPEGMAVDWLG-KNLYWADTG--------------TNRIEVSKLD-----GQHRQVLVWKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp CCCEEEEETTT-TEEEEEETT--------------TTEEEEEETT-----STTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred CcceEEEEeCC-CEEEEEECC--------------CCEEEEEecC-----CCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence 33333332211 112222211 1222222211 0111111 133455789999985 544 44
Q ss_pred E-eCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEcc
Q 011126 405 S-SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (493)
Q Consensus 405 g-s~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~sp 480 (493)
- +..+.|...++........+......+.|++++..++++++=...+.|...|+.......+........+|++..
T Consensus 141 D~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~ 217 (628)
T 4a0p_A 141 EWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ 217 (628)
T ss_dssp ECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET
T ss_pred CCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC
Confidence 3 235678888877655444445556789999999334444454567899999997643322222223445666654
No 317
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.16 E-value=10 Score=40.40 Aligned_cols=98 Identities=7% Similarity=0.097 Sum_probs=53.9
Q ss_pred EEEEeCC-C-eEEEEeC--C-----CeEEEEECCCCc------EEEEec----CCCcEEEEEEccCCCCEEEEEeCC---
Q 011126 393 DLSWSKN-G-FLLSSSA--D-----KTVRLWQVGIDR------CLRVFS----HNNYVTSVAFNPVDDNYFISGSID--- 450 (493)
Q Consensus 393 ~l~~sp~-g-~l~sgs~--D-----g~V~lWd~~~~~------~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~D--- 450 (493)
.+.+..+ + +++.|+. + ..+.+||+.+.. -..... ......++.+. ++.+++.|+.+
T Consensus 543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~ 620 (695)
T 2zwa_A 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSG 620 (695)
T ss_dssp EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSC
T ss_pred EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCC
Confidence 3555655 5 6666654 2 458899998776 211111 11122333332 37888888753
Q ss_pred -----CeEEEEeCCCCeEEEecCCCCC----------eEEEEEccCCCEEEEeecCCC
Q 011126 451 -----GKVRIWEVRRCQVVDYTDIREI----------VSAVCYCPDGKVRQNSACNFC 493 (493)
Q Consensus 451 -----g~V~IWdl~~~~~~~~~~~~~~----------I~sv~~spdG~~l~s~s~d~~ 493 (493)
..|.+||+.+.+..... .... -.+++..++|++++.||...|
T Consensus 621 ~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~c 677 (695)
T 2zwa_A 621 LFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATC 677 (695)
T ss_dssp CCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEEC
T ss_pred CCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCccC
Confidence 45999999988765321 1111 133455567789888886543
No 318
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=90.56 E-value=19 Score=37.83 Aligned_cols=101 Identities=4% Similarity=-0.028 Sum_probs=68.6
Q ss_pred CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCCCeEE
Q 011126 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~~~~~ 464 (493)
.....|++.+.+ ++++-...+.|.+.++........+ ..-.....|++.|..+.++.+- +..++|...++......
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 356788888754 5566667789999998765433333 3445678999999445444443 23578888888766544
Q ss_pred EecCCCCCeEEEEEccCCCEEEEee
Q 011126 465 DYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 465 ~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+...-...+.|+++++++.|+.+-
T Consensus 160 ~l~~~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 160 TLVPNVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEE
T ss_pred EEECCCCCcceEEEccccCEEEEEE
Confidence 4334456789999999887776654
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=90.35 E-value=28 Score=39.47 Aligned_cols=218 Identities=12% Similarity=0.079 Sum_probs=102.4
Q ss_pred CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC------CCEEEEEEC-CCcEEEEecCCCeeee
Q 011126 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGE-DGTVRVWKVIEHERLD 320 (493)
Q Consensus 248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~-Dg~V~iWdl~~~~~~~ 320 (493)
.+++.+. .+.+.++.+.... +... .. ..-...|.|+++.|. +.++|.|.. |++|+|+++.+.+.+.
T Consensus 524 ~~vvva~-g~~l~~fel~~~~--L~~~---~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQE--LRQI---SH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTE--EEEE---EE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CEEEEEE-CCEEEEEEeeCCc--eeee---cc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 4555553 4666666654321 1111 11 112457999999863 469999996 9999999998766554
Q ss_pred eeeccCC-CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEE--cCCCceeecccceEEEecCCCCEeEEEEe
Q 011126 321 GFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVV--LPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (493)
Q Consensus 321 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 397 (493)
....... .+..+.+..-... .....+-.++.++. ++.....+.... ..+.| ..++.-..+.
T Consensus 597 ~~~L~~~~~p~si~l~~~~~~--------------~~L~igl~dG~l~~~~~d~~tg~l~d~r-~~~LG-~~pv~L~~~~ 660 (1158)
T 3ei3_A 597 KEMLGGEIIPRSILMTTFESS--------------HYLLCALGDGALFYFGLNIETGLLSDRK-KVTLG-TQPTVLRTFR 660 (1158)
T ss_dssp EEECCSSCCEEEEEEEEETTE--------------EEEEEEETTSEEEEEEECTTTCCEEEEE-EEECC-SSCCEEEEEE
T ss_pred EEECCCCCCCcEEEEEEeCCC--------------cEEEEEeCCCeEEEEEEcCCCCccccce-eEEcC-CCceEEEEEe
Confidence 4433221 1222222111111 11122222322222 122111111111 11222 3344433343
Q ss_pred CCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCC-CCEEEEEeCCCeEEEEeCCCCe--EEEecCCCCC
Q 011126 398 KNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREI 472 (493)
Q Consensus 398 p~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d-~~~l~sgs~Dg~V~IWdl~~~~--~~~~~~~~~~ 472 (493)
..| .+++++ +....+|--+..-....+....--....|+... .+-++.. .++.++|..+.+-+ .+........
T Consensus 661 ~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~T 738 (1158)
T 3ei3_A 661 SLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLYES 738 (1158)
T ss_dssp SSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEECSSE
T ss_pred eCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeCCCC
Confidence 333 333333 333333433322111212222222334454311 2344443 35569998886432 2345566788
Q ss_pred eEEEEEccCCCEEEEeec
Q 011126 473 VSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 473 I~sv~~spdG~~l~s~s~ 490 (493)
+..++|+|+.+.++++..
T Consensus 739 prri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 739 PRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp EEEEEEEGGGTEEEEEEE
T ss_pred ceEEEEcCCCCEEEEEEE
Confidence 999999999887766553
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.25 E-value=14 Score=35.73 Aligned_cols=247 Identities=14% Similarity=0.125 Sum_probs=117.5
Q ss_pred ecccccceeccCCCeEEeeecCCeEEEEECCCcccc-ccccccceeeecccCCEEEEEEccC---CCEEEEE-E--CCCc
Q 011126 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFSLD---GQYLASG-G--EDGT 307 (493)
Q Consensus 235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasg-s--~Dg~ 307 (493)
......++|.|+|.++++-...|+|++++....... +..+. ..+....+....|+|+|+ ..+|+.. + .++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~--~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP--GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--ceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 344456999999998777766899999875433221 11110 112234567899999995 3344332 2 3444
Q ss_pred EEEEecCCCe----------ee-eeeec-cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126 308 VRVWKVIEHE----------RL-DGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (493)
Q Consensus 308 V~iWdl~~~~----------~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (493)
|.-|.+..+. .+ ..+.. ..+....+.|.+++ .++...-+......... .....+.++.++....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG--~Lyvt~Gd~~~~~~~qd-~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK--MLYAGTGESGDTGLSQD-RKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS--CEEEECBCTTCGGGTTC-TTCSTTCEEEECTTSSB
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC--CEEEEECCCCCCccccC-CCCCCCEEEEEeCCCCc
Confidence 5555554311 11 01111 11112233333332 22221111110000000 00122334333332110
Q ss_pred ecccc----eEEEecCCCCEeEEEEeCCCeEEEEe--CCCeEEEEECCCCc------------------EEEEecCC-Cc
Q 011126 376 LLEKP----LHEFQGHSSEVLDLSWSKNGFLLSSS--ADKTVRLWQVGIDR------------------CLRVFSHN-NY 430 (493)
Q Consensus 376 ~~~~~----~~~~~~h~~~V~~l~~sp~g~l~sgs--~Dg~V~lWd~~~~~------------------~~~~~~h~-~~ 430 (493)
....| ..--.+|.+ ...++|+|+|.|.++- .|+.-.|--+..+. ++..+.+. ..
T Consensus 186 p~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a 264 (347)
T 3das_A 186 APGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS 264 (347)
T ss_dssp CTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred cCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence 00001 111235543 5689999988444432 33323333322221 12333332 35
Q ss_pred EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE----EE-ecCCCCCeEEEEEccCCCEEEEee
Q 011126 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV----VD-YTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~----~~-~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
...++|. ++.+|+..-..+.|....+..... .. +.+....+..|...|||.++++..
T Consensus 265 p~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 265 PSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 6778886 466666665666776666665432 12 334457899999999998776643
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=89.86 E-value=12 Score=34.59 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=40.1
Q ss_pred CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCCC-----eEEEEeCCCCeEE
Q 011126 399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVV 464 (493)
Q Consensus 399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~Dg-----~V~IWdl~~~~~~ 464 (493)
++ +++.|+.+ ..+.+||+.+.+-...-. .. .....+.+ ++.+++.|+.++ .|.+||+.+.+..
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 44 66666654 468899998775543322 11 11122222 677888888664 4899999988766
Q ss_pred Ee
Q 011126 465 DY 466 (493)
Q Consensus 465 ~~ 466 (493)
..
T Consensus 281 ~~ 282 (302)
T 2xn4_A 281 VV 282 (302)
T ss_dssp EC
T ss_pred EC
Confidence 44
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.93 E-value=9.2 Score=38.43 Aligned_cols=101 Identities=12% Similarity=0.148 Sum_probs=60.3
Q ss_pred CCCEeEEEEeCCCeEEEEeCC-CeEEEEECCCCcEE--EEec-------CCCcEEEEEEccCC---CCEEEEEe-C----
Q 011126 388 SSEVLDLSWSKNGFLLSSSAD-KTVRLWQVGIDRCL--RVFS-------HNNYVTSVAFNPVD---DNYFISGS-I---- 449 (493)
Q Consensus 388 ~~~V~~l~~sp~g~l~sgs~D-g~V~lWd~~~~~~~--~~~~-------h~~~V~~v~fsp~d---~~~l~sgs-~---- 449 (493)
-.....|+|.|+|.|+.+... +.|++++...+... ..+. .......|+|+| + +.+|.... .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEeccccC
Confidence 446779999999954445555 47888886555432 2222 135677999999 4 44444433 2
Q ss_pred --------CCeEEEEeCCCC-------eEE-E-ecC-CCCCeEEEEEccCCCEEEEee
Q 011126 450 --------DGKVRIWEVRRC-------QVV-D-YTD-IREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 450 --------Dg~V~IWdl~~~-------~~~-~-~~~-~~~~I~sv~~spdG~~l~s~s 489 (493)
...|.-|++... +.+ . +.. .......|.|.|||++.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235655655321 112 1 221 123478999999998776654
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=86.41 E-value=20 Score=33.09 Aligned_cols=63 Identities=10% Similarity=0.187 Sum_probs=38.4
Q ss_pred CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--C-CCcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEE
Q 011126 399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--H-NNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV 464 (493)
Q Consensus 399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h-~~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~ 464 (493)
++ +++.|+.+ ..|.+||+.+.+-...-. . .....++.+ ++.+++.|+.+ ..|.+||+.+.+..
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 44 55555543 468899998765433221 1 112233333 56788888865 56899999987654
No 324
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.04 E-value=2.3 Score=43.78 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=71.1
Q ss_pred CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC------c-------EEEEecCCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGID------R-------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV 453 (493)
Q Consensus 389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~------~-------~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V 453 (493)
.....+..+|+| .++++-.+.+|.++|+..- + ........-.....+|.+ +|+...|.-.|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence 344678899999 5556667899999998741 1 123334556678899999 88777777799999
Q ss_pred EEEeCCCC----------eEEEecCCCCCeEEEEE------ccCCCEEEEee
Q 011126 454 RIWEVRRC----------QVVDYTDIREIVSAVCY------CPDGKVRQNSA 489 (493)
Q Consensus 454 ~IWdl~~~----------~~~~~~~~~~~I~sv~~------spdG~~l~s~s 489 (493)
.-|++... .++...+....+-.+.- .|||++|++..
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 99999753 45554444455555544 68999998875
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.77 E-value=21 Score=41.18 Aligned_cols=202 Identities=12% Similarity=0.194 Sum_probs=102.1
Q ss_pred ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC-eee
Q 011126 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERL 319 (493)
Q Consensus 241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~-~~~ 319 (493)
.-.+|..+.+|.-. ..++.|+|+....+-.+. . ...+|.-=+|-.+. .|+..+ +..|.-|++... .+.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~-------~-~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~ 139 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-------T-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPV 139 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhccc-------c-cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccH
Confidence 44677777777754 688999999765532221 1 13456666775443 454444 347999999642 222
Q ss_pred eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 399 (493)
+.+..+..-. ..+++.+..+..........-...++.+ .-....+....+..+.+.||.+....+....+
T Consensus 140 k~fdR~~~L~---------~~QIinY~~d~~~kW~~l~gi~~~~~~v-~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~ 209 (1630)
T 1xi4_A 140 KMFDRHSSLA---------GCQIINYRTDAKQKWLLLTGISAQQNRV-VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGN 209 (1630)
T ss_pred HHHhcchhcc---------cCeeEEeeeCCCCCeEEEEeeccCCCcc-cceeeeeecccccchhhhHhHhhhheeccCCC
Confidence 2222221111 1122222222221111110001111100 11111222223334456677665544443211
Q ss_pred --C--eEEEEeC---CCeEEEEECCCC---c------EEEEe-c---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126 400 --G--FLLSSSA---DKTVRLWQVGID---R------CLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (493)
Q Consensus 400 --g--~l~sgs~---Dg~V~lWd~~~~---~------~~~~~-~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~ 459 (493)
. ++..+.. .+.++|-++... . .+..+ . ..+...++..++ ...++..-+.-|.|+++|+.
T Consensus 210 ~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred CCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecc
Confidence 1 2222221 268888888543 1 11111 1 345667889998 77778888899999999999
Q ss_pred CCeEE
Q 011126 460 RCQVV 464 (493)
Q Consensus 460 ~~~~~ 464 (493)
++..+
T Consensus 289 t~~~i 293 (1630)
T 1xi4_A 289 TGTCI 293 (1630)
T ss_pred cchhh
Confidence 99766
No 326
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=85.46 E-value=24 Score=33.10 Aligned_cols=60 Identities=7% Similarity=0.062 Sum_probs=32.3
Q ss_pred eeccCCCeEEeeecC--------------CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE--CC
Q 011126 242 TLKPGDHELTLGQRM--------------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG--ED 305 (493)
Q Consensus 242 ~fsp~g~~lasgs~d--------------g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs--~D 305 (493)
-++++|.+|+-.... ..|+..++....... +. ... ...|++++++|+-.. .+
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------l~--~~~--~~~~s~~g~~Iy~~~~~~~ 126 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------LD--PDP--CIYASLIGNYIYYLHYDTQ 126 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------EE--CSC--EEEEEEETTEEEEEEESSS
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------ee--cCC--ccEEEEeCCEEEEEeecCC
Confidence 457788877766543 345555655443211 11 111 236778888887665 34
Q ss_pred CcEEEEec
Q 011126 306 GTVRVWKV 313 (493)
Q Consensus 306 g~V~iWdl 313 (493)
+.-.||.+
T Consensus 127 ~~~~Iy~~ 134 (302)
T 3s25_A 127 TATSLYRI 134 (302)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 44444443
No 327
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=84.36 E-value=25 Score=32.32 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=51.3
Q ss_pred CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEE
Q 011126 399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV 464 (493)
Q Consensus 399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~ 464 (493)
++ +++.|+.+ ..+.+||+.+.+-...-. .. ....++.+ ++.+++.|+.+ ..|.+||+.+.+..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 45 55666544 468899988775544322 11 11222332 56788888765 46999999988766
Q ss_pred EecCCCC---CeEEEEEccCCCEEEEeecC
Q 011126 465 DYTDIRE---IVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 465 ~~~~~~~---~I~sv~~spdG~~l~s~s~d 491 (493)
....... ....+. -++++++.|+.+
T Consensus 236 ~~~~~p~~r~~~~~~~--~~~~i~v~GG~~ 263 (301)
T 2vpj_A 236 TVTSMTTPRCYVGATV--LRGRLYAIAGYD 263 (301)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred ECCCCCCcccceeEEE--ECCEEEEEcCcC
Confidence 5432221 222222 377788887754
No 328
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=84.21 E-value=25 Score=32.27 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=39.4
Q ss_pred CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEE
Q 011126 399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV 464 (493)
Q Consensus 399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~ 464 (493)
++ +++.|+.+ ..|.+||+.+.+-...-. .. ....++.+ ++.+++.|+.+ ..|.+||+.+.+..
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 44 66666653 568999998876544322 11 11222333 56788888766 46889999887654
Q ss_pred E
Q 011126 465 D 465 (493)
Q Consensus 465 ~ 465 (493)
.
T Consensus 283 ~ 283 (301)
T 2vpj_A 283 V 283 (301)
T ss_dssp E
T ss_pred E
Confidence 3
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=80.89 E-value=35 Score=31.55 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=38.9
Q ss_pred CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEE
Q 011126 399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV 464 (493)
Q Consensus 399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~ 464 (493)
++ +++.|+.+ ..+.+||+.+.+-...-. .. .....+.+ ++.+++.|+.+ ..|.+||+.+.+..
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 45 66666554 568999998775443322 11 11222222 57788888754 45889999887655
Q ss_pred E
Q 011126 465 D 465 (493)
Q Consensus 465 ~ 465 (493)
.
T Consensus 292 ~ 292 (308)
T 1zgk_A 292 E 292 (308)
T ss_dssp E
T ss_pred e
Confidence 4
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=80.80 E-value=31 Score=32.64 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=29.3
Q ss_pred eEEEEECCCCcEEEE--ecC-CCcEEEEEEccCCCCEEEEEeCCC------eEEEEeCCCCeEEE
Q 011126 410 TVRLWQVGIDRCLRV--FSH-NNYVTSVAFNPVDDNYFISGSIDG------KVRIWEVRRCQVVD 465 (493)
Q Consensus 410 ~V~lWd~~~~~~~~~--~~h-~~~V~~v~fsp~d~~~l~sgs~Dg------~V~IWdl~~~~~~~ 465 (493)
.+.+||+.+.+-... +.. .....++.+ ++.+++.|+.++ .|.++++++++.+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 577899886653332 221 111223333 678888888653 46677898887764
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=80.71 E-value=36 Score=31.56 Aligned_cols=65 Identities=5% Similarity=0.183 Sum_probs=38.5
Q ss_pred CC-eEEEEeCCC-----eEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCCC--------------eEEE
Q 011126 399 NG-FLLSSSADK-----TVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSIDG--------------KVRI 455 (493)
Q Consensus 399 ~g-~l~sgs~Dg-----~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~Dg--------------~V~I 455 (493)
++ +++.|+.++ .+.+||+.+.+-...-. .. .....+.+ ++.+++.|+.++ .|.+
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~ 272 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWR 272 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE---CCEEEEECCccccCcCCccccccccCcEEE
Confidence 44 666666543 58889998775443322 11 11222333 567888887642 4789
Q ss_pred EeCCCCeEEEe
Q 011126 456 WEVRRCQVVDY 466 (493)
Q Consensus 456 Wdl~~~~~~~~ 466 (493)
||+.+.+....
T Consensus 273 yd~~~~~W~~~ 283 (315)
T 4asc_A 273 YNEEEKKWEGV 283 (315)
T ss_dssp EETTTTEEEEE
T ss_pred ecCCCChhhhh
Confidence 99988865543
No 332
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.66 E-value=38 Score=37.52 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=34.6
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
.|.++...++..+|++-+.|+++|||++.+++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 578888888889999999999999999999998877654
No 333
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=78.08 E-value=1.1 Score=28.36 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=16.2
Q ss_pred CCcccccccccccccccccC
Q 011126 4 VSNEEEEEQFFDTCEEISYV 23 (493)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (493)
.++|+||-+|||+.+=|...
T Consensus 12 ~SdEDed~EfFDA~efITv~ 31 (47)
T 2rr3_B 12 MSDEDDENEFFDAPEIITMP 31 (47)
T ss_dssp SCCCCCSSCCBCCCSSCSSC
T ss_pred ccccccccccccccceeEcc
Confidence 46788899999998877654
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=77.84 E-value=42 Score=30.74 Aligned_cols=80 Identities=10% Similarity=0.099 Sum_probs=45.7
Q ss_pred CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEEEecCCCCC-eEEEEEc
Q 011126 409 KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIREI-VSAVCYC 479 (493)
Q Consensus 409 g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~~~~~~~~~-I~sv~~s 479 (493)
..+.+||+.+.+-...-. .. .....+.+ ++.+++.|+.+ ..+.+||+.+.+.........+ ....+..
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred cEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 458899998775443321 11 11222232 57788888765 3699999998876654332211 1111222
Q ss_pred cCCCEEEEeecC
Q 011126 480 PDGKVRQNSACN 491 (493)
Q Consensus 480 pdG~~l~s~s~d 491 (493)
-++++++.|+.+
T Consensus 250 ~~~~i~v~GG~~ 261 (302)
T 2xn4_A 250 VNGLLYVVGGDD 261 (302)
T ss_dssp ETTEEEEECCBC
T ss_pred ECCEEEEECCcC
Confidence 377888888754
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=77.46 E-value=36 Score=32.61 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=40.3
Q ss_pred eCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEcc-C-------CCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126 406 SADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNP-V-------DDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (493)
Q Consensus 406 s~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp-~-------d~~~l~sgs~Dg~V~IWdl~~~~~~~~~ 467 (493)
+.||.|..++..++.....+. ...++.. .=.| . .+..+++|+.+|++.-.|+.+|+++...
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 578888888887775444333 2233322 1111 0 3567899999999999999999998543
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.11 E-value=1.1e+02 Score=33.91 Aligned_cols=38 Identities=11% Similarity=0.344 Sum_probs=32.5
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS 426 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~ 426 (493)
..+.+++..++. ++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356777787776 99999999999999999999988763
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=74.89 E-value=52 Score=30.31 Aligned_cols=88 Identities=8% Similarity=0.129 Sum_probs=50.7
Q ss_pred CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--C-CCcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEE
Q 011126 399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--H-NNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV 464 (493)
Q Consensus 399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h-~~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~ 464 (493)
++ +++.|+.+ ..+.+||+.+.+-...-. . .....++.+ ++.+++.|+.+ ..+.+||+.+.+..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 45 55666543 458899988765433221 1 111222333 56788888765 46999999988766
Q ss_pred EecCCCC---CeEEEEEccCCCEEEEeecC
Q 011126 465 DYTDIRE---IVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 465 ~~~~~~~---~I~sv~~spdG~~l~s~s~d 491 (493)
....... ....+. -++++++.|+.+
T Consensus 245 ~~~~~p~~r~~~~~~~--~~~~i~v~GG~~ 272 (308)
T 1zgk_A 245 FVAPMKHRRSALGITV--HQGRIYVLGGYD 272 (308)
T ss_dssp ECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred ECCCCCCCccceEEEE--ECCEEEEEcCcC
Confidence 5433222 122222 367788887753
No 338
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=74.63 E-value=62 Score=31.04 Aligned_cols=76 Identities=11% Similarity=0.113 Sum_probs=48.7
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
..-..++..++.- .+..-+.-|.|++||+.++.++..-+ ..+.|..-+-+. ...=++.....|.|.--.+....++
T Consensus 259 ~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 259 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEG-GGTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccC-CCCcEEEEcCCCEEEEEEECcccEe
Confidence 4445677788764 77778889999999999999987766 334444444443 2233444446666665555544433
No 339
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=68.42 E-value=1e+02 Score=30.85 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC---cEEEEec----C------CCcEEEEEEccCC----CCEEEEEeC
Q 011126 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGID---RCLRVFS----H------NNYVTSVAFNPVD----DNYFISGSI 449 (493)
Q Consensus 389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~---~~~~~~~----h------~~~V~~v~fsp~d----~~~l~sgs~ 449 (493)
.....|+|.|+| .|+.+...|.|++++.... ..+..+. . ......|+|+| + +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P-~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP-NYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT-THHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC-CCcCCCEEEEEEeC
Confidence 456789999998 4777888999999975432 1222221 1 35678999999 4 444444332
Q ss_pred C------------CeEEEEeCCC----------CeEE-Eec--CCCCCeEEEEEccCCCEEEEeec
Q 011126 450 D------------GKVRIWEVRR----------CQVV-DYT--DIREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 450 D------------g~V~IWdl~~----------~~~~-~~~--~~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+ ..|.-|.+.. .+++ ... ........|.|.|||++.++.+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455532 1222 221 22234688999999987766553
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=64.79 E-value=96 Score=29.57 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=17.2
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEE
Q 011126 400 GFLLSSSADKTVRLWQVGIDRCLR 423 (493)
Q Consensus 400 g~l~sgs~Dg~V~lWd~~~~~~~~ 423 (493)
+.++.++.|+.|.-.|..++..+.
T Consensus 213 g~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 213 GMCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp SCCEEEETTTEEEEECSTTCCEEE
T ss_pred CcEEEECCCCEEEEEECCCCcEEE
Confidence 533557788888888888777665
No 341
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=62.41 E-value=93 Score=28.37 Aligned_cols=79 Identities=9% Similarity=0.108 Sum_probs=45.5
Q ss_pred CCeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEEEecCCC---CCeEEE
Q 011126 408 DKTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIR---EIVSAV 476 (493)
Q Consensus 408 Dg~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~~~~~~~---~~I~sv 476 (493)
-..+.+||+.+.+-...-. .. .....+.+ ++.+++.|+.+ ..|.+||+.+.+........ .....+
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 3558899998875443322 11 11222222 56778887754 36899999988766543222 222333
Q ss_pred EEccCCCEEEEeecC
Q 011126 477 CYCPDGKVRQNSACN 491 (493)
Q Consensus 477 ~~spdG~~l~s~s~d 491 (493)
.+ ++++++.|+.+
T Consensus 245 ~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQ 257 (306)
T ss_dssp EE--TTEEEEEECBC
T ss_pred EE--CCEEEEEeCcC
Confidence 33 77788887753
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=62.40 E-value=97 Score=28.53 Aligned_cols=65 Identities=8% Similarity=0.242 Sum_probs=37.4
Q ss_pred CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC--------------CeEEE
Q 011126 399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID--------------GKVRI 455 (493)
Q Consensus 399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D--------------g~V~I 455 (493)
++ +++.|+.+ ..+.+||+.+.+-...-. .. .....+.+ ++.+++.|+.+ ..|.+
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~ 282 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWK 282 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE---TTEEEEECCBCCBC----CCBCCBCCCEEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE---CCEEEEECCeeccCCCCceeccceeeeEEE
Confidence 44 55555533 357789988765433321 11 11122222 56788887764 35889
Q ss_pred EeCCCCeEEEe
Q 011126 456 WEVRRCQVVDY 466 (493)
Q Consensus 456 Wdl~~~~~~~~ 466 (493)
||+.+.+....
T Consensus 283 yd~~~~~W~~~ 293 (318)
T 2woz_A 283 YEDDKKEWAGM 293 (318)
T ss_dssp EETTTTEEEEE
T ss_pred EeCCCCEehhh
Confidence 99988765543
No 343
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=59.21 E-value=1.1e+02 Score=28.11 Aligned_cols=85 Identities=5% Similarity=0.108 Sum_probs=49.3
Q ss_pred eEEEEeC-C-----CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCCC-----eEEEEeCCCCeEEEe
Q 011126 401 FLLSSSA-D-----KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDY 466 (493)
Q Consensus 401 ~l~sgs~-D-----g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~Dg-----~V~IWdl~~~~~~~~ 466 (493)
+++.|+. + ..+.+||+.+.+-...-. .. ....++.+ ++.+++.|+.++ .+.+||+.+.+....
T Consensus 151 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 5566654 2 468899988765433221 11 11222232 567888888765 589999998876654
Q ss_pred cCCCC---CeEEEEEccCCCEEEEeec
Q 011126 467 TDIRE---IVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 467 ~~~~~---~I~sv~~spdG~~l~s~s~ 490 (493)
..... ....+ .-++++++.|+.
T Consensus 228 ~~~p~~r~~~~~~--~~~~~l~v~GG~ 252 (315)
T 4asc_A 228 EAFPQERSSLSLV--SLVGTLYAIGGF 252 (315)
T ss_dssp CCCSSCCBSCEEE--EETTEEEEEEEE
T ss_pred CCCCCcccceeEE--EECCEEEEECCc
Confidence 33221 12222 236777777775
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=58.01 E-value=1.9e+02 Score=30.46 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=52.5
Q ss_pred CC-eEEEEeCCC--eEEEEECCCCcEEEEec------CCCcEEEEEEccCCCCEEEEEeC--C-----CeEEEEeCCCCe
Q 011126 399 NG-FLLSSSADK--TVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI--D-----GKVRIWEVRRCQ 462 (493)
Q Consensus 399 ~g-~l~sgs~Dg--~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~--D-----g~V~IWdl~~~~ 462 (493)
++ +++.|+.++ .+.+||..+..-...-. ......++.+....+.+++.|+. + ..+.+||+.+.+
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 55 666666544 68999998765433321 11222335556523678888876 2 469999998877
Q ss_pred ------EEEecC---CCCCeEEEEEccCCCEEEEeecC
Q 011126 463 ------VVDYTD---IREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 463 ------~~~~~~---~~~~I~sv~~spdG~~l~s~s~d 491 (493)
...... ....-.+++...++++++.||.+
T Consensus 580 w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~ 617 (695)
T 2zwa_A 580 ATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTS 617 (695)
T ss_dssp SSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBC
T ss_pred cccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCcc
Confidence 332211 11111233334447888888753
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=56.64 E-value=56 Score=33.73 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=45.9
Q ss_pred CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC----------cEEEEecCCCcEEEEEE------ccCCCCEEEEEeC--
Q 011126 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGID----------RCLRVFSHNNYVTSVAF------NPVDDNYFISGSI-- 449 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~----------~~~~~~~h~~~V~~v~f------sp~d~~~l~sgs~-- 449 (493)
-.....+|.++| ...|--.|..|.-|++... ..+..+.-.-.+-.+.- .| +|++|++...
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~-dGk~lv~lnK~s 456 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEA-DGKWLVALSKFS 456 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-CSCEEEEEESCC
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCC-CccEEEEecccc
Confidence 345677899999 5566678999999998643 34444442222333333 46 8889988754
Q ss_pred -CCe----------EEEEeCCCCe
Q 011126 450 -DGK----------VRIWEVRRCQ 462 (493)
Q Consensus 450 -Dg~----------V~IWdl~~~~ 462 (493)
|.- -.+.|+...+
T Consensus 457 kdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 457 KDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp TTSSCCCSSSCCEEEEEEECSSSS
T ss_pred cccCcCCCCCCCCcceeEecCCCc
Confidence 432 4677776543
No 346
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=55.04 E-value=2.1e+02 Score=30.14 Aligned_cols=99 Identities=9% Similarity=-0.021 Sum_probs=65.8
Q ss_pred CCEeEEEEeCCCeEEEEeCCCeEEEEECCCC-----cEE---EEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGID-----RCL---RVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (493)
Q Consensus 389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~-----~~~---~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I 455 (493)
..|.++.-.++|.|..|+..+-|.++|..+. ... ..+. ....|.+|...+ ++++.+.++..+-|..
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence 4577887777786777777666888885421 111 1221 234699999988 8887774444445888
Q ss_pred EeCCCCeEEEecCC----CCCeEEEEEccCCCEEEEe
Q 011126 456 WEVRRCQVVDYTDI----REIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 456 Wdl~~~~~~~~~~~----~~~I~sv~~spdG~~l~s~ 488 (493)
+|..+++...+... ...+.++....+|.+.+.+
T Consensus 498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt 534 (758)
T 3ott_A 498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF 534 (758)
T ss_dssp EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE
T ss_pred EeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe
Confidence 99988877654321 2468888888889877654
No 347
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.30 E-value=1.7e+02 Score=32.89 Aligned_cols=37 Identities=11% Similarity=0.346 Sum_probs=30.9
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS 426 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~ 426 (493)
.+.+++..++. ++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566667766 89999999999999999999988763
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=50.79 E-value=1.6e+02 Score=27.37 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=26.1
Q ss_pred eeccCCCeEEeee--cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126 242 TLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (493)
Q Consensus 242 ~fsp~g~~lasgs--~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (493)
-|..+|.+|.... .++.|...+....... .+.. . .+--++++|.+|+-+..
T Consensus 20 ~~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~--------~l~~--~--~~~~i~~~g~~Iyy~~~ 72 (302)
T 3s25_A 20 LFCESDGEVFFSNTNDNGRLYAMNIDGSNIH--------KLSN--D--TAMYINADKNYVYYVRN 72 (302)
T ss_dssp CEEEETTEEEEEEGGGTTEEEEEETTSCSCE--------EEEE--E--EEEEEEECSSEEEEEEE
T ss_pred EEEEeCCEEEEEeCCCCceEEEEcCCCCCCE--------EccC--C--ceeeEEEcCCEEEEEEC
Confidence 3556677666653 2455555554432211 1111 1 13355788888876654
No 349
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.03 E-value=57 Score=33.67 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=44.3
Q ss_pred CcEEEEEEccCCCCEEEEEeC------------CCeEEEEeCCCCeEEEecC--CCCCeEEEEEccCCCEEEEeec
Q 011126 429 NYVTSVAFNPVDDNYFISGSI------------DGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKVRQNSAC 490 (493)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs~------------Dg~V~IWdl~~~~~~~~~~--~~~~I~sv~~spdG~~l~s~s~ 490 (493)
+....|.|.+ +|.+.+.... ...|..++..++++..+.. ....++.++|+||++.|.++-.
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 4577899999 8888774321 1267778887888765442 2356899999999999987653
No 350
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=49.68 E-value=21 Score=37.86 Aligned_cols=37 Identities=16% Similarity=0.430 Sum_probs=31.1
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (493)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~ 324 (493)
.|.++.+ +..+|++-+.|+++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4666555 477999999999999999999998887766
No 351
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.23 E-value=25 Score=37.33 Aligned_cols=34 Identities=15% Similarity=0.516 Sum_probs=28.5
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (493)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~ 465 (493)
..|.++.+ +..++++-+.|.++|+|++.+++++.
T Consensus 222 ~~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~ 255 (729)
T 3f7f_A 222 SVISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQ 255 (729)
T ss_dssp CEEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred ceEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEE
Confidence 45666665 46899999999999999999999774
No 352
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=47.46 E-value=1.8e+02 Score=27.09 Aligned_cols=38 Identities=5% Similarity=-0.201 Sum_probs=20.4
Q ss_pred eEEEEeCCCCeEEEe---cCCCCCeEEEEEccCCCEEEEeecC
Q 011126 452 KVRIWEVRRCQVVDY---TDIREIVSAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 452 ~V~IWdl~~~~~~~~---~~~~~~I~sv~~spdG~~l~s~s~d 491 (493)
.+.+||+.+.+.... ......-. +...++++++.||.+
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGET 326 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEEC
T ss_pred eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeC
Confidence 578999987754432 22222222 234578888888864
No 353
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=46.72 E-value=4e+02 Score=30.98 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=44.5
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~ 464 (493)
-...+..++.. .+..-+.-|.|.++|+.++.++..-+ ....|...+-++..+. ++.....|.|.--.+....++
T Consensus 260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred cceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCc-eEEEcCCceEEEEEEccchhh
Confidence 34466777754 77777888999999999999886654 2333333333331233 333335666555555554444
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=46.37 E-value=55 Score=33.95 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=42.3
Q ss_pred cEEEEEEccCCCCEEEEEeCC------------CeEEEEeCCCCeEEEe--cCCCCCeEEEEEccCCCEEEEee
Q 011126 430 YVTSVAFNPVDDNYFISGSID------------GKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 430 ~V~~v~fsp~d~~~l~sgs~D------------g~V~IWdl~~~~~~~~--~~~~~~I~sv~~spdG~~l~s~s 489 (493)
..-.|+|+| .+++++.-..+ ..+.+.+..++++..+ ......++.++|+||++.|.+.-
T Consensus 477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 456789999 88877764332 2466667777877653 33456799999999999987763
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.04 E-value=15 Score=41.59 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=33.8
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (493)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~ 325 (493)
.|.++...++..+|++-+.|+++|||++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4556667778899999999999999999999998887654
No 356
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=45.92 E-value=2.4e+02 Score=28.16 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=48.6
Q ss_pred CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (493)
Q Consensus 388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~ 463 (493)
..-..++..++.- .+..-+.-|.|++||+.++.++..-+ ....|..-+-+. ...=++.....|.|.--.+....+
T Consensus 258 ~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TTTEEEEEETTCEEEEEEECTTTH
T ss_pred cCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccC-CCCcEEEEccCceEEEEEEccccc
Confidence 3445678888765 77788889999999999999987765 334444444444 333344444666666555554443
No 357
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=42.04 E-value=2e+02 Score=26.20 Aligned_cols=90 Identities=10% Similarity=0.106 Sum_probs=49.6
Q ss_pred CC-eEEEEeC------CCeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeE
Q 011126 399 NG-FLLSSSA------DKTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQV 463 (493)
Q Consensus 399 ~g-~l~sgs~------Dg~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~ 463 (493)
++ +++.|+. -..+.+||+.+.+-...-. .. ....++.+ ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 45 5555543 2458999998875443322 11 11222232 56788888754 3578999998876
Q ss_pred EEecCCCCCe-EEEEEccCCCEEEEeecC
Q 011126 464 VDYTDIREIV-SAVCYCPDGKVRQNSACN 491 (493)
Q Consensus 464 ~~~~~~~~~I-~sv~~spdG~~l~s~s~d 491 (493)
........+- ...+..-++++++.||.+
T Consensus 235 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 263 (318)
T 2woz_A 235 EVMTEFPQERSSISLVSLAGSLYAIGGFA 263 (318)
T ss_dssp EECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred EECCCCCCcccceEEEEECCEEEEECCee
Confidence 6543322211 111223467788887754
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=40.21 E-value=2.5e+02 Score=27.17 Aligned_cols=79 Identities=8% Similarity=0.150 Sum_probs=53.7
Q ss_pred eEEEEECCCC--cEEEEec-------CCCcEEEEEEc---cC---CCCEEEEE-eCCCeEEEEeCCCCeEEEecC----C
Q 011126 410 TVRLWQVGID--RCLRVFS-------HNNYVTSVAFN---PV---DDNYFISG-SIDGKVRIWEVRRCQVVDYTD----I 469 (493)
Q Consensus 410 ~V~lWd~~~~--~~~~~~~-------h~~~V~~v~fs---p~---d~~~l~sg-s~Dg~V~IWdl~~~~~~~~~~----~ 469 (493)
.|.+||+.+. +.++.+. ....++.+.+. |. ++.++... +..+-|.|+|+.+++.-.... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5788999998 8888875 34578888888 21 13344333 346789999999886543221 0
Q ss_pred ---------------CCCeEEEEEccC----CCEEEEe
Q 011126 470 ---------------REIVSAVCYCPD----GKVRQNS 488 (493)
Q Consensus 470 ---------------~~~I~sv~~spd----G~~l~s~ 488 (493)
...|..|+++|+ ++.|.-.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~ 241 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYL 241 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEE
Confidence 246888999998 7777644
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=36.30 E-value=2.6e+02 Score=26.51 Aligned_cols=28 Identities=7% Similarity=-0.089 Sum_probs=18.8
Q ss_pred cEEEEEEccCC-CCEEEEEeCCCeEEEEe
Q 011126 430 YVTSVAFNPVD-DNYFISGSIDGKVRIWE 457 (493)
Q Consensus 430 ~V~~v~fsp~d-~~~l~sgs~Dg~V~IWd 457 (493)
.|.+|++.|.+ ...|..++..+.|...+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~ 144 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST 144 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc
Confidence 58889998744 55666666666666554
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=34.21 E-value=1.7e+02 Score=30.17 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=39.7
Q ss_pred CCEeEEEEeCCC-eEE-EEeC-----------CCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEe
Q 011126 389 SEVLDLSWSKNG-FLL-SSSA-----------DKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGS 448 (493)
Q Consensus 389 ~~V~~l~~sp~g-~l~-sgs~-----------Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs 448 (493)
.....|.|.++| +.+ +=.. ...|..++..+++....+. ....++.++|+| |+++|...-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEEE
Confidence 456789999999 333 3211 1256666777777655554 346799999999 888776653
No 361
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=33.79 E-value=4.4e+02 Score=27.61 Aligned_cols=95 Identities=8% Similarity=0.084 Sum_probs=61.1
Q ss_pred CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (493)
Q Consensus 390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~ 467 (493)
.|.+|...+++ .|..|+. +-|..+|..+++...... ....|.++...+ ++.+.+. +.+ -|.+++..+.+...+.
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWig-T~~-Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDLLAG-TDN-GLYVYHNDTTPLQHII 267 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCEEEE-ETT-EEEEECCTTSCCEEEC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCEEEE-eCC-ceeEEecCCCcEEEEE
Confidence 48888887765 5555553 458888987765432211 335688888887 6766554 444 4888998877654332
Q ss_pred C--------CCCCeEEEEEccCCCEEEEe
Q 011126 468 D--------IREIVSAVCYCPDGKVRQNS 488 (493)
Q Consensus 468 ~--------~~~~I~sv~~spdG~~l~s~ 488 (493)
. ....|.++....+|.+.+..
T Consensus 268 ~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 268 HDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp CCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred cCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 1 23458999888888766543
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=29.72 E-value=4.2e+02 Score=26.18 Aligned_cols=103 Identities=13% Similarity=0.033 Sum_probs=53.6
Q ss_pred ecCCCCEeEEEEeCC-----C--eEEEEeCCC----eEEEEECCCC------cEEEEecCC--CcEEEEEEccC------
Q 011126 385 QGHSSEVLDLSWSKN-----G--FLLSSSADK----TVRLWQVGID------RCLRVFSHN--NYVTSVAFNPV------ 439 (493)
Q Consensus 385 ~~h~~~V~~l~~sp~-----g--~l~sgs~Dg----~V~lWd~~~~------~~~~~~~h~--~~V~~v~fsp~------ 439 (493)
.||.++ ..++|.|. | .+..+-..+ .-.|..+..+ .++..+.|. ..++.+.|-..
T Consensus 214 ~G~RNp-~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~ 292 (463)
T 2wg3_C 214 HGLHDP-GRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERL 292 (463)
T ss_dssp ECCSSC-CBEEEESSCSSTTCSEEEEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTT
T ss_pred ECCCCc-ceEEECCCCCCcccceEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhh
Confidence 455554 57899996 4 344332111 2334444322 244555554 57788888531
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCe----EEEe---------cCCCCCeEEEEEccCCCEEEEee
Q 011126 440 DDNYFISGSIDGKVRIWEVRRCQ----VVDY---------TDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 440 d~~~l~sgs~Dg~V~IWdl~~~~----~~~~---------~~~~~~I~sv~~spdG~~l~s~s 489 (493)
.+.+|+ +...+.|....+.... ...+ ......+..+...|||.++++..
T Consensus 293 ~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 293 YGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp TTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred cceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEec
Confidence 233454 4555776666664331 1112 12245799999999998877653
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=29.63 E-value=1.7e+02 Score=30.26 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=39.1
Q ss_pred CEeEEEEeCCCeEEEEeCC-------------CeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEE
Q 011126 390 EVLDLSWSKNGFLLSSSAD-------------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISG 447 (493)
Q Consensus 390 ~V~~l~~sp~g~l~sgs~D-------------g~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sg 447 (493)
..-.|+|+|.|.|+.+... ..+.+.+..+++..+.+. ....++.++|+| |++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC-CCCEEEEE
Confidence 3457899999944444322 245566666776655554 668999999999 88877654
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=26.74 E-value=4.4e+02 Score=25.40 Aligned_cols=100 Identities=11% Similarity=0.201 Sum_probs=60.2
Q ss_pred CCEeEEEEeCC----C-eEEEEeCCCeEEEEECCC--------CcEEEEecCC---CcEEEEEEccCCCCEEEEEeCCCe
Q 011126 389 SEVLDLSWSKN----G-FLLSSSADKTVRLWQVGI--------DRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGK 452 (493)
Q Consensus 389 ~~V~~l~~sp~----g-~l~sgs~Dg~V~lWd~~~--------~~~~~~~~h~---~~V~~v~fsp~d~~~l~sgs~Dg~ 452 (493)
..|..|+.+|+ + .|.-....+ -++|.+.+ ...++.+... ..-..+++.+.+|.++++--....
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~a 298 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQ 298 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSE
T ss_pred cCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCe
Confidence 46888999886 4 444444333 23444321 2223333322 334456776437888888888899
Q ss_pred EEEEeCCC-C------eEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126 453 VRIWEVRR-C------QVVDYTDIREIVSAVCYCPDGKVRQNSA 489 (493)
Q Consensus 453 V~IWdl~~-~------~~~~~~~~~~~I~sv~~spdG~~l~s~s 489 (493)
|..|+..+ . +++.....-..+..+.+.++|.+.+.++
T Consensus 299 I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 299 VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 99999986 1 2333333334578888988997666654
No 365
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.48 E-value=1.2e+02 Score=30.53 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=37.2
Q ss_pred CeEEeeecCCeEEEEECC-Cccccccccccceeee--cccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126 248 HELTLGQRMRRVRVHPVK-KQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (493)
Q Consensus 248 ~~lasgs~dg~V~vwd~~-~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~Dg~V~i 310 (493)
..+..|+.+|+|+=--+. .............+++ ....+|..|.++++..+|+.++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 356678999987443332 2111000111122333 23578999999999999999999887665
No 366
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=23.40 E-value=3.7e+02 Score=26.95 Aligned_cols=76 Identities=11% Similarity=0.148 Sum_probs=46.9
Q ss_pred cceEEEecCCCCEeEEEEeCC----C---eEEEEeCCCeEEEEECC-CCc-------EEEEe---cCCCcEEEEEEccCC
Q 011126 379 KPLHEFQGHSSEVLDLSWSKN----G---FLLSSSADKTVRLWQVG-IDR-------CLRVF---SHNNYVTSVAFNPVD 440 (493)
Q Consensus 379 ~~~~~~~~h~~~V~~l~~sp~----g---~l~sgs~Dg~V~lWd~~-~~~-------~~~~~---~h~~~V~~v~fsp~d 440 (493)
.|+.....-....+.|+...- + .+..|..+|.|+=.-+. .+. .+..+ ....+|..|.+++ +
T Consensus 394 ~Pll~~~~~~~~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~-~ 472 (495)
T 1q47_A 394 RPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELST-K 472 (495)
T ss_dssp SCSEEESSSSSCEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEET-T
T ss_pred ccEEEecCCccceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcC-C
Confidence 444433322225677766532 4 77888999886533332 211 22222 3567899999999 8
Q ss_pred CCEEEEEeCCCeEEE
Q 011126 441 DNYFISGSIDGKVRI 455 (493)
Q Consensus 441 ~~~l~sgs~Dg~V~I 455 (493)
..+|..++.++.++|
T Consensus 473 ~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 473 QQQLYIGSTAGVAQL 487 (495)
T ss_dssp TTEEEEEBSSCEEEE
T ss_pred CCEEEEEECCeEEEE
Confidence 899999988876665
No 367
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=21.35 E-value=5.1e+02 Score=24.31 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=32.7
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-C------------CCCeEEEEEccC-CCEEEEee
Q 011126 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-I------------REIVSAVCYCPD-GKVRQNSA 489 (493)
Q Consensus 429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~-~------------~~~I~sv~~spd-G~~l~s~s 489 (493)
..+.+|.++|.+...|..+..++.|...+-.......... . ...+.+|.++|+ ...|.++.
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~ 251 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN 251 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence 4688999998444555555545545544322222222111 0 134889999996 34454443
Done!