BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011127
         (493 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NMO|A Chain A, Structural Genomics, Protein Ybgi, Unknown Function
 pdb|1NMO|B Chain B, Structural Genomics, Protein Ybgi, Unknown Function
 pdb|1NMO|C Chain C, Structural Genomics, Protein Ybgi, Unknown Function
 pdb|1NMO|D Chain D, Structural Genomics, Protein Ybgi, Unknown Function
 pdb|1NMO|E Chain E, Structural Genomics, Protein Ybgi, Unknown Function
 pdb|1NMO|F Chain F, Structural Genomics, Protein Ybgi, Unknown Function
          Length = 247

 Score = 31.6 bits (70), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 351 TYAGEYFADKMHGFGVYRFANGHRYEGAWHEGRRQGLGMY------TFRNGETQSGHWQN 404
           T  G+ F D    FGV  F  G   E   H  R QGL  Y      T R G      W N
Sbjct: 172 TGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLN 231

Query: 405 GILDIPST 412
              D+  T
Sbjct: 232 ENTDLDVT 239


>pdb|1NMP|A Chain A, Structural Genomics, Ybgi Protein, Unknown Function
 pdb|1NMP|B Chain B, Structural Genomics, Ybgi Protein, Unknown Function
 pdb|1NMP|C Chain C, Structural Genomics, Ybgi Protein, Unknown Function
 pdb|1NMP|D Chain D, Structural Genomics, Ybgi Protein, Unknown Function
 pdb|1NMP|E Chain E, Structural Genomics, Ybgi Protein, Unknown Function
 pdb|1NMP|F Chain F, Structural Genomics, Ybgi Protein, Unknown Function
          Length = 247

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 351 TYAGEYFADKMHGFGVYRFANGHRYEGAWHEGRRQGLGMY------TFRNGETQSGHWQN 404
           T  G+ F D    FGV  F  G   E   H  R QGL  Y      T R G      W N
Sbjct: 172 TGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLN 231

Query: 405 GILDIPST 412
              D+  T
Sbjct: 232 ENTDLDVT 239


>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
 pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
          Length = 293

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 346 FRNGDTYAGEYFADKMHGFGVYRFANGHRYEGAWHEGRRQG 386
           F +G T  G Y  D + G GVY + +G   +G + +G   G
Sbjct: 2   FFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNG 42



 Score = 29.6 bits (65), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 296 GVYRFYTGDVYAGEWSNGQSHGCGVHTCEDGSR-YVGEFKWGVKHGLGHYHFRNGDTYAG 354
           GVY +  G V  G + +G+ +G       DG   + G++K  ++HG+   ++ +G +  G
Sbjct: 21  GVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVG 80

Query: 355 EYFAD 359
           E   D
Sbjct: 81  EVNED 85


>pdb|1N6C|A Chain A, Structure Of Set79
          Length = 297

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 296 GVYRFYTGDVYAGEWSNGQSHGCGVHTCEDGSR-YVGEFKWGVKHGLGHYHFRNGDTYAG 354
           GVY +  G V  G + +G+ +G       DG   + G++K  ++HG+   ++ +G +  G
Sbjct: 3   GVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVG 62

Query: 355 EYFAD 359
           E   D
Sbjct: 63  EVNED 67


>pdb|1MT6|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
           Set79 WITH ADOHCY
          Length = 280

 Score = 29.6 bits (65), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 296 GVYRFYTGDVYAGEWSNGQSHGCGVHTCEDGSR-YVGEFKWGVKHGLGHYHFRNGDTYAG 354
           GVY +  G V  G + +G+ +G       DG   + G++K  ++HG+   ++ +G +  G
Sbjct: 15  GVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVG 74

Query: 355 EYFAD 359
           E   D
Sbjct: 75  EVNED 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,606,601
Number of Sequences: 62578
Number of extensions: 558013
Number of successful extensions: 924
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 18
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)