Query 011127
Match_columns 493
No_of_seqs 390 out of 1928
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:25:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03185 phosphatidylinositol 100.0 2.9E-41 6.2E-46 373.7 21.5 184 229-412 3-186 (765)
2 PLN03185 phosphatidylinositol 100.0 4.4E-40 9.4E-45 364.3 20.3 198 207-405 2-204 (765)
3 KOG0231 Junctional membrane co 99.9 8.5E-25 1.8E-29 233.5 8.8 279 206-484 111-414 (455)
4 COG4642 Uncharacterized protei 99.8 1.7E-18 3.7E-23 154.1 10.2 127 259-385 10-136 (139)
5 COG4642 Uncharacterized protei 99.8 6E-18 1.3E-22 150.7 11.6 133 278-410 6-138 (139)
6 KOG0231 Junctional membrane co 99.7 1.7E-18 3.7E-23 185.2 7.2 177 232-410 119-310 (455)
7 COG2849 Uncharacterized protei 98.8 1.5E-07 3.2E-12 92.9 15.7 142 218-359 80-227 (230)
8 COG2849 Uncharacterized protei 98.6 6.5E-06 1.4E-10 81.3 19.1 136 271-406 87-228 (230)
9 PF02493 MORN: MORN repeat; I 97.2 0.0003 6.5E-09 44.4 2.9 22 260-281 1-22 (23)
10 smart00698 MORN Possible plasm 97.1 0.00064 1.4E-08 44.6 3.8 21 259-279 2-22 (26)
11 smart00698 MORN Possible plasm 97.1 0.00067 1.5E-08 44.5 3.8 21 282-302 2-22 (26)
12 PF02493 MORN: MORN repeat; I 97.1 0.00044 9.4E-09 43.6 2.5 21 352-372 1-21 (23)
13 PF07202 Tcp10_C: T-complex pr 69.1 76 0.0016 30.5 11.4 122 224-374 8-130 (179)
14 PF07661 MORN_2: MORN repeat v 65.4 9.7 0.00021 22.9 3.1 20 224-243 2-22 (22)
15 PF07202 Tcp10_C: T-complex pr 54.3 2.1E+02 0.0045 27.5 11.6 100 228-351 31-130 (179)
16 PHA00448 hypothetical protein 48.9 87 0.0019 25.4 6.6 17 462-478 47-63 (70)
17 PF14977 FAM194: FAM194 protei 46.3 57 0.0012 32.1 6.5 33 224-257 23-55 (208)
18 PF12915 DUF3833: Protein of u 43.8 69 0.0015 30.4 6.4 48 333-380 28-82 (164)
19 PF11839 DUF3359: Protein of u 42.5 1.8E+02 0.004 25.2 8.2 22 453-474 58-79 (96)
20 PF12955 DUF3844: Domain of un 39.4 23 0.00051 31.0 2.3 33 140-178 65-98 (103)
21 PHA00448 hypothetical protein 38.9 1.7E+02 0.0037 23.8 6.8 40 433-474 24-63 (70)
22 PF14977 FAM194: FAM194 protei 32.5 2.3E+02 0.0051 27.9 8.2 12 247-258 23-34 (208)
23 PF09679 TraQ: Type-F conjugat 32.4 97 0.0021 26.4 4.7 33 449-481 58-90 (93)
24 PF12758 DUF3813: Protein of u 31.7 1.3E+02 0.0028 24.1 5.1 52 429-480 9-60 (63)
25 KOG0994 Extracellular matrix g 31.2 1.7E+02 0.0036 35.9 8.0 17 453-469 1568-1584(1758)
26 PF07172 GRP: Glycine rich pro 30.6 34 0.00073 29.5 1.9 18 159-176 7-24 (95)
27 KOG4261 Talin [Cytoskeleton] 28.2 1.4E+02 0.0031 34.8 6.7 31 452-482 904-934 (1003)
28 PF03032 Brevenin: Brevenin/es 25.1 38 0.00083 25.4 1.1 21 154-174 1-21 (46)
29 PF07617 DUF1579: Protein of u 22.3 2.9E+02 0.0062 26.0 6.6 33 236-268 52-86 (159)
30 PTZ00121 MAEBL; Provisional 21.3 2.6E+02 0.0057 35.2 7.3 22 458-479 1258-1279(2084)
31 CHL00118 atpG ATP synthase CF0 20.4 5.5E+02 0.012 23.6 8.1 17 426-442 55-71 (156)
No 1
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=2.9e-41 Score=373.71 Aligned_cols=184 Identities=34% Similarity=0.727 Sum_probs=128.7
Q ss_pred EEecCCcEEEEeeeCCEEeeeEEEEEeCCcEEEEEEECCeEeceEEEEecCCcEEEEEEeCCeeeeEEEEEEcCCCEEEE
Q 011127 229 QVYSNGDVYEGEYHKGKCSGSGVYYYYLSGRYEGDWVDGKYDGYGVETWARGSRYRGQYRQGLRHGFGVYRFYTGDVYAG 308 (493)
Q Consensus 229 ~~~~nG~~YeGe~knGk~~G~Gv~~~~nG~~YeG~w~nGk~~G~G~~~y~dG~~YeG~f~nG~rhG~G~~~~~nG~~YeG 308 (493)
..++||++|+|+|.+|++||.|+++|++|..|+|+|++|++||.|+++|++|.+|+|+|.+|++||.|++++.+|.+|+|
T Consensus 3 ~~~~nGd~Y~Ge~~~g~~hG~G~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G~~YeG 82 (765)
T PLN03185 3 LVLSNGDFYSGSLLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTYKG 82 (765)
T ss_pred EEecCCCEEEEEEECCccccceEEEECCCCEEEEEEECCEeeCcEeEEeCCCCEEEEEEECCEEeceEEEEecCCCEEEE
Confidence 45667777777777777777777777766677777777777777777777777777777777777777777667777777
Q ss_pred EeecCCccCccccccccCcceeeeeecCeeeeeeeceecCCcceeEEeeCCeeeeecEEEeeCCCEEEEEEcCCeeeecE
Q 011127 309 EWSNGQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGVYRFANGHRYEGAWHEGRRQGLG 388 (493)
Q Consensus 309 ~w~nG~~~G~G~~~~~dG~~Y~G~fk~G~~~G~G~~~~~nG~~Y~Gew~ngkr~G~Gv~~~~nG~~YeG~w~ngk~~G~G 388 (493)
+|.+|++||.|+++++||.+|+|+|++|+++|.|++.++||.+|+|+|++|++||.|+++|+||.+|+|+|.+|++||.|
T Consensus 83 ~w~~gkkhG~G~~~y~nG~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~nG~~YeG~w~nG~~hG~G 162 (765)
T PLN03185 83 RWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHGFG 162 (765)
T ss_pred EEeCCcccceeEEEEecchhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEEeCCCeEEEEEeCCcceeeE
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred EEEEcCCcEEEEEEECCEeecCCC
Q 011127 389 MYTFRNGETQSGHWQNGILDIPST 412 (493)
Q Consensus 389 ~~~~~dG~~~eG~w~nG~l~~~~~ 412 (493)
+++++||.+|+|.|++|+.++.+.
T Consensus 163 ~y~~~DG~~Y~G~W~~G~~~G~G~ 186 (765)
T PLN03185 163 VYTWSDGGCYVGTWTRGLKDGKGV 186 (765)
T ss_pred EEEECCCCEEEEEeeCCceEeEEE
Confidence 777777777777777766665544
No 2
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=4.4e-40 Score=364.35 Aligned_cols=198 Identities=32% Similarity=0.656 Sum_probs=186.5
Q ss_pred CeEEccCCcccCC--CCceeeEEEEEecCCcEEEEeeeCCEEeeeEEEEEeCCcEEEEEEECCeEeceEEEEecCCcEEE
Q 011127 207 PVFWSIGSRPKLE--KRGNSGCWVQVYSNGDVYEGEYHKGKCSGSGVYYYYLSGRYEGDWVDGKYDGYGVETWARGSRYR 284 (493)
Q Consensus 207 ~~~w~~G~~~~~e--k~~~~G~~~~~~~nG~~YeGe~knGk~~G~Gv~~~~nG~~YeG~w~nGk~~G~G~~~y~dG~~Ye 284 (493)
.+.+.+|+.|+++ ++..+|.++..|+||.+|+|+|++|++||.|++.|++|.+|+|+|++|++||.|++++++|.+|+
T Consensus 2 e~~~~nGd~Y~Ge~~~g~~hG~G~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G~~Ye 81 (765)
T PLN03185 2 ELVLSNGDFYSGSLLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTYK 81 (765)
T ss_pred eEEecCCCEEEEEEECCccccceEEEECCCCEEEEEEECCEeeCcEeEEeCCCCEEEEEEECCEEeceEEEEecCCCEEE
Confidence 3568889988865 66789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeeeeEEEEEEcCCCEEEEEeecCCccCccccccccCcceeeeeecCeeeeeeeceecCCcceeEEeeCCeeeee
Q 011127 285 GQYRQGLRHGFGVYRFYTGDVYAGEWSNGQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGF 364 (493)
Q Consensus 285 G~f~nG~rhG~G~~~~~nG~~YeG~w~nG~~~G~G~~~~~dG~~Y~G~fk~G~~~G~G~~~~~nG~~Y~Gew~ngkr~G~ 364 (493)
|+|.+|++||.|+++|+||++|+|+|++|+++|.|++.|+||.+|+|+|++|++||.|+++|+||++|+|+|.+|++||.
T Consensus 82 G~w~~gkkhG~G~~~y~nG~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~nG~~YeG~w~nG~~hG~ 161 (765)
T PLN03185 82 GRWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHGF 161 (765)
T ss_pred EEEeCCcccceeEEEEecchhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEEeCCCeEEEEEeCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCCEEEEEEcCCeeeecEEEEEcCCcE---EEEEEECC
Q 011127 365 GVYRFANGHRYEGAWHEGRRQGLGMYTFRNGET---QSGHWQNG 405 (493)
Q Consensus 365 Gv~~~~nG~~YeG~w~ngk~~G~G~~~~~dG~~---~eG~w~nG 405 (493)
|+++++||.+|+|.|.+|+++|.|+++ ++|+. +.|.|.++
T Consensus 162 G~y~~~DG~~Y~G~W~~G~~~G~G~~y-~~G~~~p~~~~~~~~~ 204 (765)
T PLN03185 162 GVYTWSDGGCYVGTWTRGLKDGKGVFY-PAGSRVPAVQEFYLNA 204 (765)
T ss_pred EEEEECCCCEEEEEeeCCceEeEEEEE-ECCCcccccchhhhhc
Confidence 999999999999999999999999985 67763 55556543
No 3
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.91 E-value=8.5e-25 Score=233.45 Aligned_cols=279 Identities=39% Similarity=0.618 Sum_probs=233.6
Q ss_pred CCeEEccCCcccCCC---CceeeEEEEEecCCcEEEEeeeCCEEeeeEEEEEeCCcEEEEEEECCeEeceEEEEecCCcE
Q 011127 206 LPVFWSIGSRPKLEK---RGNSGCWVQVYSNGDVYEGEYHKGKCSGSGVYYYYLSGRYEGDWVDGKYDGYGVETWARGSR 282 (493)
Q Consensus 206 ~~~~w~~G~~~~~ek---~~~~G~~~~~~~nG~~YeGe~knGk~~G~Gv~~~~nG~~YeG~w~nGk~~G~G~~~y~dG~~ 282 (493)
+.+.|..+....++. +...|.++..+++|++|+|+|++++++|.|++++++|..|+|+|.++++||+|+++++||.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~pdGsk 190 (455)
T KOG0231|consen 111 KGLSELLSTDSGGEEGEEGTRSGEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFPDGSK 190 (455)
T ss_pred CCccceecCCcccccccccccCccceEecCCCCEEEeeecCCcccccceEEecCCCEeeceecCCCccCCCeEEccCCCE
Confidence 445566555333222 35678888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCC----eeeeEEEEEEcC----------CCEEEEEeec-CCccCccccccccCcceeeeeecCeeeeeeeceec
Q 011127 283 YRGQYRQG----LRHGFGVYRFYT----------GDVYAGEWSN-GQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFR 347 (493)
Q Consensus 283 YeG~f~nG----~rhG~G~~~~~n----------G~~YeG~w~n-G~~~G~G~~~~~dG~~Y~G~fk~G~~~G~G~~~~~ 347 (493)
|+|+|.++ ++||.+.+.+.+ ..+|.++|.+ +..++.+.+...+|..|.+.|..+..+|.+.+++.
T Consensus 191 ~eg~~~~~~l~~l~~gk~~~~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~g~~~~~~~ 270 (455)
T KOG0231|consen 191 YEGQYKNNILEALRHGKGRYKFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAGVARGLAKLHFP 270 (455)
T ss_pred EEEEeecccccccccceEEEEEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcCccccccceecc
Confidence 99999999 899999999985 6799999999 99999999999999999999999999999999999
Q ss_pred CCcceeEEeeCCeeeeecEEEeeCCCEEEEEEcCCeeeecEEEEEcCCc-EEEEEEECCEeecCCCCccccCCC----C-
Q 011127 348 NGDTYAGEYFADKMHGFGVYRFANGHRYEGAWHEGRRQGLGMYTFRNGE-TQSGHWQNGILDIPSTQTTTHPVS----P- 421 (493)
Q Consensus 348 nG~~Y~Gew~ngkr~G~Gv~~~~nG~~YeG~w~ngk~~G~G~~~~~dG~-~~eG~w~nG~l~~~~~~~~~~p~~----~- 421 (493)
++..|.|.|..+.++|.+++.+.++..|++.|..+++.|.+.+++.++. .....|..+.+..........+.. .
T Consensus 271 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (455)
T KOG0231|consen 271 NGSGYVGEFKQDKKHGGGQFLFLNGSEYEGWFREGPKSGLGGFTFDKGPAPRSIPWSSGLPEEPTSTLSPKPDTRGLTLS 350 (455)
T ss_pred ccccccCcceeccccCcceeeeccccccccccccCccccccccccCCCCcccccccccccccCccccCCccccCcccccc
Confidence 9999999999999999999999999999999999999999999999988 777788887766442211111000 0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 011127 422 IAVYHSKVLNAVQEARRAAEKAYDV-AKVDERVNRAVTAANRAANAARVAAVKAVQKQMHHNNS 484 (493)
Q Consensus 422 ~~~~~~kv~~avqeAr~Aa~~A~~~-akv~~~v~~a~~~A~~Aa~aA~~Aa~~Avq~~~~~~~~ 484 (493)
...-..-+...++.++..++++... .+...++...+..+++|..+++.+.+++..+.++++..
T Consensus 351 ~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~ 414 (455)
T KOG0231|consen 351 PEPPGGMVQRLEQQARECADEARGQPGKDEERFLFVVSEANAAGLRHRGAGVKAPGTPTDGEPA 414 (455)
T ss_pred CCCCcccchhhhhhhHHHHHhhcCCcccccccchhhhhhhhccchhhhccccccCCCccccccc
Confidence 0000012456677777777777766 55666788889999999999999999998888877665
No 4
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.77 E-value=1.7e-18 Score=154.15 Aligned_cols=127 Identities=31% Similarity=0.532 Sum_probs=59.6
Q ss_pred EEEEEEECCeEeceEEEEecCCcEEEEEEeCCeeeeEEEEEEcCCCEEEEEeecCCccCccccccccCcceeeeeecCee
Q 011127 259 RYEGDWVDGKYDGYGVETWARGSRYRGQYRQGLRHGFGVYRFYTGDVYAGEWSNGQSHGCGVHTCEDGSRYVGEFKWGVK 338 (493)
Q Consensus 259 ~YeG~w~nGk~~G~G~~~y~dG~~YeG~f~nG~rhG~G~~~~~nG~~YeG~w~nG~~~G~G~~~~~dG~~Y~G~fk~G~~ 338 (493)
+|++.|..++..|.++....++.++.|.+++++..|.|.+.+.+|.+|+|.++|++++|.|+++++||++|+|.|+++++
T Consensus 10 ~y~~~~~~g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~s~~F 89 (139)
T COG4642 10 RYEGFFVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGPFNSGKF 89 (139)
T ss_pred eeeeEEecccccccceEEeccccEEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEeccccCccc
Confidence 44444554444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred eeeeeceecCCcceeEEeeCCeeeeecEEEeeCCCEEEEEEcCCeee
Q 011127 339 HGLGHYHFRNGDTYAGEYFADKMHGFGVYRFANGHRYEGAWHEGRRQ 385 (493)
Q Consensus 339 ~G~G~~~~~nG~~Y~Gew~ngkr~G~Gv~~~~nG~~YeG~w~ngk~~ 385 (493)
+|.|++...+|..|.|.|.++...|.|.+...+|.+|+|.++.++.+
T Consensus 90 ~g~G~~~~~~Gw~~~G~F~~Gq~~g~g~l~~~~g~vy~G~fk~g~f~ 136 (139)
T COG4642 90 RGQGTRGSFNGWLYIGRFTEGQANGKGFLLKEDGSVYTGMFKQGRFP 136 (139)
T ss_pred cceEeeccccCCEEeeeecccccCCceeEEecCCcEEeeeEEeeecC
Confidence 44444444444444444444444444444444444444444444443
No 5
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=6e-18 Score=150.69 Aligned_cols=133 Identities=30% Similarity=0.546 Sum_probs=128.5
Q ss_pred cCCcEEEEEEeCCeeeeEEEEEEcCCCEEEEEeecCCccCccccccccCcceeeeeecCeeeeeeeceecCCcceeEEee
Q 011127 278 ARGSRYRGQYRQGLRHGFGVYRFYTGDVYAGEWSNGQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYF 357 (493)
Q Consensus 278 ~dG~~YeG~f~nG~rhG~G~~~~~nG~~YeG~w~nG~~~G~G~~~~~dG~~Y~G~fk~G~~~G~G~~~~~nG~~Y~Gew~ 357 (493)
+-+.+|++.|..++..|.+++...++.++.|..++++..|.|.+.+.+|.+|+|.++|++++|.|++.++|+++|+|.|.
T Consensus 6 a~g~~y~~~~~~g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~ 85 (139)
T COG4642 6 AFGLRYEGFFVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGPFN 85 (139)
T ss_pred hhheeeeeEEecccccccceEEeccccEEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEecccc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeecEEEeeCCCEEEEEEcCCeeeecEEEEEcCCcEEEEEEECCEeecC
Q 011127 358 ADKMHGFGVYRFANGHRYEGAWHEGRRQGLGMYTFRNGETQSGHWQNGILDIP 410 (493)
Q Consensus 358 ngkr~G~Gv~~~~nG~~YeG~w~ngk~~G~G~~~~~dG~~~eG~w~nG~l~~~ 410 (493)
+++.+|.|++...+|.+|+|.|.++...|.|.+...||.+|+|.++.+++..+
T Consensus 86 s~~F~g~G~~~~~~Gw~~~G~F~~Gq~~g~g~l~~~~g~vy~G~fk~g~f~~~ 138 (139)
T COG4642 86 SGKFRGQGTRGSFNGWLYIGRFTEGQANGKGFLLKEDGSVYTGMFKQGRFPKN 138 (139)
T ss_pred CccccceEeeccccCCEEeeeecccccCCceeEEecCCcEEeeeEEeeecCCC
Confidence 99999999999999999999999999999999999999999999999988653
No 6
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.74 E-value=1.7e-18 Score=185.19 Aligned_cols=177 Identities=33% Similarity=0.601 Sum_probs=165.9
Q ss_pred cCCcEEEEeeeCCEEeeeEEEEEeCCcEEEEEEECCeEeceEEEEecCCcEEEEEEeCCeeeeEEEEEEcCCCEEEEEee
Q 011127 232 SNGDVYEGEYHKGKCSGSGVYYYYLSGRYEGDWVDGKYDGYGVETWARGSRYRGQYRQGLRHGFGVYRFYTGDVYAGEWS 311 (493)
Q Consensus 232 ~nG~~YeGe~knGk~~G~Gv~~~~nG~~YeG~w~nGk~~G~G~~~y~dG~~YeG~f~nG~rhG~G~~~~~nG~~YeG~w~ 311 (493)
++...|+++. +...|.|+..++++++|+|+|.+++++|.|+.++++|..|+|+|.++++||+|+..+++|.+|+|.|.
T Consensus 119 ~~~~~~~~~~--~~~~g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~pdGsk~eg~~~ 196 (455)
T KOG0231|consen 119 TDSGGEEGEE--GTRSGEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFPDGSKYEGQYK 196 (455)
T ss_pred CCcccccccc--cccCccceEecCCCCEEEeeecCCcccccceEEecCCCEeeceecCCCccCCCeEEccCCCEEEEEee
Confidence 4455666655 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC----CccCcccccccc----------Ccceeeeeec-CeeeeeeeceecCCcceeEEeeCCeeeeecEEEeeCCCEEE
Q 011127 312 NG----QSHGCGVHTCED----------GSRYVGEFKW-GVKHGLGHYHFRNGDTYAGEYFADKMHGFGVYRFANGHRYE 376 (493)
Q Consensus 312 nG----~~~G~G~~~~~d----------G~~Y~G~fk~-G~~~G~G~~~~~nG~~Y~Gew~ngkr~G~Gv~~~~nG~~Ye 376 (493)
++ .++|.+.+.+.+ ..+|.++|.. +..|+.+.+.+.+|..|.+.|..+..+|.+...++|+..|.
T Consensus 197 ~~~l~~l~~gk~~~~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (455)
T KOG0231|consen 197 NNILEALRHGKGRYKFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAGVARGLAKLHFPNGSGYV 276 (455)
T ss_pred cccccccccceEEEEEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcCccccccceecccccccc
Confidence 99 899999998875 6779999998 99999999999999999999999999999999999999999
Q ss_pred EEEcCCeeeecEEEEEcCCcEEEEEEECCEeecC
Q 011127 377 GAWHEGRRQGLGMYTFRNGETQSGHWQNGILDIP 410 (493)
Q Consensus 377 G~w~ngk~~G~G~~~~~dG~~~eG~w~nG~l~~~ 410 (493)
|.|..+.++|.+++.+.++..+++.|..+...+.
T Consensus 277 g~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~ 310 (455)
T KOG0231|consen 277 GEFKQDKKHGGGQFLFLNGSEYEGWFREGPKSGL 310 (455)
T ss_pred CcceeccccCcceeeeccccccccccccCccccc
Confidence 9999999999999999999999999998876654
No 7
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.80 E-value=1.5e-07 Score=92.92 Aligned_cols=142 Identities=21% Similarity=0.268 Sum_probs=107.9
Q ss_pred CCCCceeeEEEEEecCCc-EEEEeeeCCEEeeeEEEEEeCCc-EEEEEEECCeEeceEEEEecCCc-EEEEEEeCCeeee
Q 011127 218 LEKRGNSGCWVQVYSNGD-VYEGEYHKGKCSGSGVYYYYLSG-RYEGDWVDGKYDGYGVETWARGS-RYRGQYRQGLRHG 294 (493)
Q Consensus 218 ~ek~~~~G~~~~~~~nG~-~YeGe~knGk~~G~Gv~~~~nG~-~YeG~w~nGk~~G~G~~~y~dG~-~YeG~f~nG~rhG 294 (493)
++..+++|....+++||. ...-.++||+++|....+|++|. .-+-.|+||+.+|.-+.+|++|. .++..|++++++|
T Consensus 80 ~~~~~~~g~~~~~~~ng~~~~~~~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g 159 (230)
T COG2849 80 GKKTPFTGIVEKYYENGELEAAIYYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEG 159 (230)
T ss_pred ccccCCcceeeEeecCCeEEEEEEecCCceeeeEEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccc
Confidence 456678888888888887 57888888888888888888887 66788888888888888888888 6788888888888
Q ss_pred EEEEEEcCCC-EEEEEeecCCccCccccccccCcc-eeeeeecCeeeeeeeceecCCcc-eeEEeeCC
Q 011127 295 FGVYRFYTGD-VYAGEWSNGQSHGCGVHTCEDGSR-YVGEFKWGVKHGLGHYHFRNGDT-YAGEYFAD 359 (493)
Q Consensus 295 ~G~~~~~nG~-~YeG~w~nG~~~G~G~~~~~dG~~-Y~G~fk~G~~~G~G~~~~~nG~~-Y~Gew~ng 359 (493)
....+|++|. ..+-.+++|+++|.-+.++++|.. .+..|++++++|.-..+..+|.. -+..+.++
T Consensus 160 ~~k~yy~nGkl~~e~~~knG~~~G~~k~Y~enGkl~~e~~~kng~~~G~~~~yde~G~~i~~~~y~~g 227 (230)
T COG2849 160 IAKTYYENGKLLSEVPYKNGKKNGVVKIYYENGKLVEEVTYKNGKLDGVVKEYDEAGKLIKETLYKNG 227 (230)
T ss_pred cEEEEcCCCcEEEeecccCCcccceEEEEccCCCEeEEEEecCCcccccEEEEecCCCEEEEEEeeCC
Confidence 8888888887 466778888888888888777765 56667777776666666555543 33444443
No 8
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.55 E-value=6.5e-06 Score=81.32 Aligned_cols=136 Identities=21% Similarity=0.276 Sum_probs=74.3
Q ss_pred ceEEEEecCCc-EEEEEEeCCeeeeEEEEEEcCCCEE-EEEeecCCccCccccccccCcc-eeeeeecCeeeeeeeceec
Q 011127 271 GYGVETWARGS-RYRGQYRQGLRHGFGVYRFYTGDVY-AGEWSNGQSHGCGVHTCEDGSR-YVGEFKWGVKHGLGHYHFR 347 (493)
Q Consensus 271 G~G~~~y~dG~-~YeG~f~nG~rhG~G~~~~~nG~~Y-eG~w~nG~~~G~G~~~~~dG~~-Y~G~fk~G~~~G~G~~~~~ 347 (493)
|.-..++.||. ...-.++||+.+|....+|++|... +-.|.+|..+|.-+.+++||.. ++..|+++...|.-..+++
T Consensus 87 g~~~~~~~ng~~~~~~~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~k~yy~ 166 (230)
T COG2849 87 GIVEKYYENGELEAAIYYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIAKTYYE 166 (230)
T ss_pred ceeeEeecCCeEEEEEEecCCceeeeEEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccccEEEEcC
Confidence 33333333333 3334444444444444444444422 2344555555555555555544 4555555555555555555
Q ss_pred CCcc-eeEEeeCCeeeeecEEEeeCCC-EEEEEEcCCeeeecEEEEEcCCc-EEEEEEECCE
Q 011127 348 NGDT-YAGEYFADKMHGFGVYRFANGH-RYEGAWHEGRRQGLGMYTFRNGE-TQSGHWQNGI 406 (493)
Q Consensus 348 nG~~-Y~Gew~ngkr~G~Gv~~~~nG~-~YeG~w~ngk~~G~G~~~~~dG~-~~eG~w~nG~ 406 (493)
+|.+ .+-.++||.++|.-..+++||. ..+..|++++++|.=..+..+|. +.+..+++|.
T Consensus 167 nGkl~~e~~~knG~~~G~~k~Y~enGkl~~e~~~kng~~~G~~~~yde~G~~i~~~~y~~g~ 228 (230)
T COG2849 167 NGKLLSEVPYKNGKKNGVVKIYYENGKLVEEVTYKNGKLDGVVKEYDEAGKLIKETLYKNGK 228 (230)
T ss_pred CCcEEEeecccCCcccceEEEEccCCCEeEEEEecCCcccccEEEEecCCCEEEEEEeeCCc
Confidence 5553 4556666666666666666666 56777777777777776666655 4566666665
No 9
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=97.24 E-value=0.0003 Score=44.36 Aligned_cols=22 Identities=55% Similarity=1.186 Sum_probs=10.3
Q ss_pred EEEEEECCeEeceEEEEecCCc
Q 011127 260 YEGDWVDGKYDGYGVETWARGS 281 (493)
Q Consensus 260 YeG~w~nGk~~G~G~~~y~dG~ 281 (493)
|+|+|++|+++|.|+++++||+
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G~ 22 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDGD 22 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS-
T ss_pred CEEEEEECcccccEEEEeCCCC
Confidence 4455555555555555555543
No 10
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.15 E-value=0.00064 Score=44.59 Aligned_cols=21 Identities=57% Similarity=1.104 Sum_probs=11.3
Q ss_pred EEEEEEECCeEeceEEEEecC
Q 011127 259 RYEGDWVDGKYDGYGVETWAR 279 (493)
Q Consensus 259 ~YeG~w~nGk~~G~G~~~y~d 279 (493)
+|+|+|++|++||.|+++|+|
T Consensus 2 ~Y~G~w~~g~~hG~G~~~~~d 22 (26)
T smart00698 2 RYEGEWRNGKRHGRGVYTYAN 22 (26)
T ss_pred eEEEEEECCeEEeeEEEEecc
Confidence 355555555555555555543
No 11
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.14 E-value=0.00067 Score=44.50 Aligned_cols=21 Identities=52% Similarity=1.115 Sum_probs=12.9
Q ss_pred EEEEEEeCCeeeeEEEEEEcC
Q 011127 282 RYRGQYRQGLRHGFGVYRFYT 302 (493)
Q Consensus 282 ~YeG~f~nG~rhG~G~~~~~n 302 (493)
+|+|+|.+|++||.|++.+.|
T Consensus 2 ~Y~G~w~~g~~hG~G~~~~~d 22 (26)
T smart00698 2 RYEGEWRNGKRHGRGVYTYAN 22 (26)
T ss_pred eEEEEEECCeEEeeEEEEecc
Confidence 466666666666666666554
No 12
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=97.09 E-value=0.00044 Score=43.60 Aligned_cols=21 Identities=52% Similarity=1.138 Sum_probs=9.1
Q ss_pred eeEEeeCCeeeeecEEEeeCC
Q 011127 352 YAGEYFADKMHGFGVYRFANG 372 (493)
Q Consensus 352 Y~Gew~ngkr~G~Gv~~~~nG 372 (493)
|+|+|.+++++|.|+++++||
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G 21 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDG 21 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS
T ss_pred CEEEEEECcccccEEEEeCCC
Confidence 344444444444444444444
No 13
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=69.15 E-value=76 Score=30.50 Aligned_cols=122 Identities=21% Similarity=0.294 Sum_probs=57.1
Q ss_pred eeEEEEEecCCcEEEEeeeCCEEee-eEEEEEeCCcEEEEEEECCeEeceEEEEecCCcEEEEEEeCCeeeeEEEEEEcC
Q 011127 224 SGCWVQVYSNGDVYEGEYHKGKCSG-SGVYYYYLSGRYEGDWVDGKYDGYGVETWARGSRYRGQYRQGLRHGFGVYRFYT 302 (493)
Q Consensus 224 ~G~~~~~~~nG~~YeGe~knGk~~G-~Gv~~~~nG~~YeG~w~nGk~~G~G~~~y~dG~~YeG~f~nG~rhG~G~~~~~n 302 (493)
+|.-+..|+||..-+= ..+| .=+..|.||++ +.-..+|.=+++|++..+.+-.+ ++|.-++.|+|
T Consensus 8 dG~~~i~f~NGt~K~v-----~~dg~~~~v~f~NGDv-----K~~~pDg~v~Y~ya~~~T~~tt~----pdG~ev~~Fpn 73 (179)
T PF07202_consen 8 DGRRVITFPNGTKKEV-----SPDGKTVIVRFPNGDV-----KQTLPDGRVIYYYADAQTTHTTY----PDGLEVYEFPN 73 (179)
T ss_pred CCCEEEEECCCCEEEE-----cCCCCEEEEEEeCCCE-----eEEecCCcEEEEEeCCCEEEEEc----CCCcEEEEeCC
Confidence 4445566677654321 1233 33455666652 22245666677777665555444 34445666666
Q ss_pred CCEEEEEeecCCccCccccccccCcceeeeeecCeeeeeeeceecCCcceeEEeeCCeeeeecEEEeeCCCE
Q 011127 303 GDVYAGEWSNGQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGVYRFANGHR 374 (493)
Q Consensus 303 G~~YeG~w~nG~~~G~G~~~~~dG~~Y~G~fk~G~~~G~G~~~~~nG~~Y~Gew~ngkr~G~Gv~~~~nG~~ 374 (493)
|.+-. .|-+| .-.+.++||.+ +.-...|.=...++||.+.. -.++|.-+..++||.+
T Consensus 74 gQ~E~-h~pDG----~keI~fPDGt~-----k~~~~dG~e~~~fpDGT~~~-----~~~nG~k~i~~pnGq~ 130 (179)
T PF07202_consen 74 GQIEK-HYPDG----SKEIVFPDGTI-----KYIHPDGREETVFPDGTIVT-----IDPNGDKTITFPNGQK 130 (179)
T ss_pred CceEE-EcCCC----CEEEEeCCCcE-----EEEeCCCcEEEECCCceEEE-----EeCCCcEEEEeCCCcE
Confidence 54322 33333 22444555443 11112222234445544322 1234555566666654
No 14
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=65.39 E-value=9.7 Score=22.93 Aligned_cols=20 Identities=40% Similarity=0.858 Sum_probs=12.6
Q ss_pred eeEEEEEecCCcE-EEEeeeC
Q 011127 224 SGCWVQVYSNGDV-YEGEYHK 243 (493)
Q Consensus 224 ~G~~~~~~~nG~~-YeGe~kn 243 (493)
+|.|..+++||.+ .++.++|
T Consensus 2 ~G~~~~yy~nG~l~~~~~y~n 22 (22)
T PF07661_consen 2 DGEWKFYYENGKLKSEGHYKN 22 (22)
T ss_pred cceEEEEeCCCCEEEEEEEEC
Confidence 5667777777763 4666554
No 15
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=54.29 E-value=2.1e+02 Score=27.53 Aligned_cols=100 Identities=23% Similarity=0.320 Sum_probs=47.4
Q ss_pred EEEecCCcEEEEeeeCCEEeeeEEEEEeCCcEEEEEEECCeEeceEEEEecCCcEEEEEEeCCeeeeEEEEEEcCCCEEE
Q 011127 228 VQVYSNGDVYEGEYHKGKCSGSGVYYYYLSGRYEGDWVDGKYDGYGVETWARGSRYRGQYRQGLRHGFGVYRFYTGDVYA 307 (493)
Q Consensus 228 ~~~~~nG~~YeGe~knGk~~G~Gv~~~~nG~~YeG~w~nGk~~G~G~~~y~dG~~YeG~f~nG~rhG~G~~~~~nG~~Ye 307 (493)
...|.|||+ +.-.++|.=+++|.+.....=.+ ++|.-++.++||.+-. .|.+| .-...|+||.+..
T Consensus 31 ~v~f~NGDv-----K~~~pDg~v~Y~ya~~~T~~tt~----pdG~ev~~FpngQ~E~-h~pDG----~keI~fPDGt~k~ 96 (179)
T PF07202_consen 31 IVRFPNGDV-----KQTLPDGRVIYYYADAQTTHTTY----PDGLEVYEFPNGQIEK-HYPDG----SKEIVFPDGTIKY 96 (179)
T ss_pred EEEEeCCCE-----eEEecCCcEEEEEeCCCEEEEEc----CCCcEEEEeCCCceEE-EcCCC----CEEEEeCCCcEEE
Confidence 345666654 22245566666666554433333 4455556666643322 33333 3345555554311
Q ss_pred EEeecCCccCccccccccCcceeeeeecCeeeeeeeceecCCcc
Q 011127 308 GEWSNGQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDT 351 (493)
Q Consensus 308 G~w~nG~~~G~G~~~~~dG~~Y~G~fk~G~~~G~G~~~~~nG~~ 351 (493)
-..+|.-...++||.+.. -..+|.-++.++||..
T Consensus 97 -----~~~dG~e~~~fpDGT~~~-----~~~nG~k~i~~pnGq~ 130 (179)
T PF07202_consen 97 -----IHPDGREETVFPDGTIVT-----IDPNGDKTITFPNGQK 130 (179)
T ss_pred -----EeCCCcEEEECCCceEEE-----EeCCCcEEEEeCCCcE
Confidence 112333344555555421 1234555666777764
No 16
>PHA00448 hypothetical protein
Probab=48.89 E-value=87 Score=25.37 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011127 462 RAANAARVAAVKAVQKQ 478 (493)
Q Consensus 462 ~Aa~aA~~Aa~~Avq~~ 478 (493)
.|...+..||..|.+.|
T Consensus 47 aA~~~~~~AAriAakAq 63 (70)
T PHA00448 47 AASAGVTEAARIAAKAQ 63 (70)
T ss_pred HHHHhHhHHHHHHHHHH
Confidence 33333444444444444
No 17
>PF14977 FAM194: FAM194 protein
Probab=46.28 E-value=57 Score=32.08 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=16.1
Q ss_pred eeEEEEEecCCcEEEEeeeCCEEeeeEEEEEeCC
Q 011127 224 SGCWVQVYSNGDVYEGEYHKGKCSGSGVYYYYLS 257 (493)
Q Consensus 224 ~G~~~~~~~nG~~YeGe~knGk~~G~Gv~~~~nG 257 (493)
+|.+..+||+|++-.-.... ++.+...+.+.|.
T Consensus 23 DGsg~i~YPSGnlAi~~~~~-~~~~~~~~v~eD~ 55 (208)
T PF14977_consen 23 DGSGQIFYPSGNLAICISPT-CRGGFTYIVYEDS 55 (208)
T ss_pred CCCEEEEeCCCCEEEEEecc-CCCceEEEEEecC
Confidence 45555566666655444443 3333444444433
No 18
>PF12915 DUF3833: Protein of unknown function (DUF3833); InterPro: IPR024409 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=43.78 E-value=69 Score=30.39 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=26.3
Q ss_pred eecCeeeeeeeceecCCc-------ceeEEeeCCeeeeecEEEeeCCCEEEEEEc
Q 011127 333 FKWGVKHGLGHYHFRNGD-------TYAGEYFADKMHGFGVYRFANGHRYEGAWH 380 (493)
Q Consensus 333 fk~G~~~G~G~~~~~nG~-------~Y~Gew~ngkr~G~Gv~~~~nG~~YeG~w~ 380 (493)
|-+|.....|++....|. ...|.|..+...=.=.+.|.||.+-.-.|.
T Consensus 28 fF~G~~~A~G~~~dr~G~v~rrF~v~i~g~w~g~~~tL~E~F~y~DGe~q~R~W~ 82 (164)
T PF12915_consen 28 FFNGKLVAWGMFQDRSGKVTRRFTVDIDGSWDGNTGTLDEDFVYDDGETQTRVWT 82 (164)
T ss_pred HCCCcEEEEEEEECCCCCEEEEEEEEEEEEEECCEEEEEEEEEECCCCEEEEEEE
Confidence 444555556666555554 145666655555555556666665555553
No 19
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=42.52 E-value=1.8e+02 Score=25.19 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011127 453 VNRAVTAANRAANAARVAAVKA 474 (493)
Q Consensus 453 v~~a~~~A~~Aa~aA~~Aa~~A 474 (493)
.+.|...|+.|..+|..|.+.|
T Consensus 58 AdeA~~kA~~A~aaA~~Aqq~A 79 (96)
T PF11839_consen 58 ADEAASKADAALAAAEAAQQTA 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544454444444
No 20
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=39.35 E-value=23 Score=31.02 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=20.2
Q ss_pred hhcceehhccCCchHHHHHHHHHHHHHHHHhhhc-cccCC
Q 011127 140 SLPFFYFLVSHPSHSFFLDFLSAFAFSAALLFSL-NLALP 178 (493)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~l~f~~-~~~v~ 178 (493)
|.||.+|+.. ..-|++.+++.+.|||+. +..+|
T Consensus 65 S~~F~L~~~~------ti~lv~~~~~~I~lL~svG~e~LP 98 (103)
T PF12955_consen 65 SVPFWLFAGF------TIALVVLVAGAIGLLFSVGSEELP 98 (103)
T ss_pred cchhhHHHHH------HHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5555555444 456666677777888877 34434
No 21
>PHA00448 hypothetical protein
Probab=38.88 E-value=1.7e+02 Score=23.75 Aligned_cols=40 Identities=30% Similarity=0.366 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011127 433 VQEARRAAEKAYDVAKVDERVNRAVTAANRAANAARVAAVKA 474 (493)
Q Consensus 433 vqeAr~Aa~~A~~~akv~~~v~~a~~~A~~Aa~aA~~Aa~~A 474 (493)
...|+.-|+.|...++..+.... ++...+.++|+.|+..+
T Consensus 24 ~~~Ar~~A~~A~~lakqs~~l~~--aA~~~~~~AAriAakAq 63 (70)
T PHA00448 24 NDKARKDATRARRLAKQSRELSD--AASAGVTEAARIAAKAQ 63 (70)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHH--HHHHhHhHHHHHHHHHH
Confidence 33444445556555554333222 23444556666666544
No 22
>PF14977 FAM194: FAM194 protein
Probab=32.46 E-value=2.3e+02 Score=27.89 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=6.4
Q ss_pred eeeEEEEEeCCc
Q 011127 247 SGSGVYYYYLSG 258 (493)
Q Consensus 247 ~G~Gv~~~~nG~ 258 (493)
+|.|..+|++|.
T Consensus 23 DGsg~i~YPSGn 34 (208)
T PF14977_consen 23 DGSGQIFYPSGN 34 (208)
T ss_pred CCCEEEEeCCCC
Confidence 345555555554
No 23
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=32.43 E-value=97 Score=26.36 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011127 449 VDERVNRAVTAANRAANAARVAAVKAVQKQMHH 481 (493)
Q Consensus 449 v~~~v~~a~~~A~~Aa~aA~~Aa~~Avq~~~~~ 481 (493)
+.++....+...++|+..||.+|..|.++.-.+
T Consensus 58 ILda~iarv~~eer~~~ear~~a~~a~e~e~~h 90 (93)
T PF09679_consen 58 ILDAWIARVSREERAALEARQQAICAAEKEEKH 90 (93)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 334444556777888888999998888776544
No 24
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=31.68 E-value=1.3e+02 Score=24.12 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011127 429 VLNAVQEARRAAEKAYDVAKVDERVNRAVTAANRAANAARVAAVKAVQKQMH 480 (493)
Q Consensus 429 v~~avqeAr~Aa~~A~~~akv~~~v~~a~~~A~~Aa~aA~~Aa~~Avq~~~~ 480 (493)
...+|++|...+.-..+..+...+...|+..|..-...|..+.+...|++.+
T Consensus 9 Ar~aV~~a~~~~~~~~~~q~~i~rAKnAlsSAyanss~aE~~QL~q~Q~qL~ 60 (63)
T PF12758_consen 9 ARDAVEQAVSAASGSEEQQKAIQRAKNALSSAYANSSDAEREQLRQFQDQLD 60 (63)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3344444443322221333333344555666666677788888888888764
No 25
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=31.22 E-value=1.7e+02 Score=35.90 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011127 453 VNRAVTAANRAANAARV 469 (493)
Q Consensus 453 v~~a~~~A~~Aa~aA~~ 469 (493)
|..|.++|.+|..+|..
T Consensus 1568 V~eaL~~Ad~Aq~~a~~ 1584 (1758)
T KOG0994|consen 1568 VVEALEEADVAQGEAQD 1584 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444333333
No 26
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.62 E-value=34 Score=29.48 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhcccc
Q 011127 159 FLSAFAFSAALLFSLNLA 176 (493)
Q Consensus 159 ll~~l~~~~~l~f~~~~~ 176 (493)
|||+|+|.++|++|.+.+
T Consensus 7 llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 445565556666665333
No 27
>KOG4261 consensus Talin [Cytoskeleton]
Probab=28.20 E-value=1.4e+02 Score=34.81 Aligned_cols=31 Identities=35% Similarity=0.278 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 011127 452 RVNRAVTAANRAANAARVAAVKAVQKQMHHN 482 (493)
Q Consensus 452 ~v~~a~~~A~~Aa~aA~~Aa~~Avq~~~~~~ 482 (493)
++.-|..-|-.|+.++..|+.+|+|.+..+.
T Consensus 904 rLefAaKqaa~~aTqtISAaq~Avqt~q~~~ 934 (1003)
T KOG4261|consen 904 RLEFAAKQAAAAATQTISAAQNAVQTAQLHA 934 (1003)
T ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhhccc
Confidence 3344433444445556666666666665543
No 28
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=25.10 E-value=38 Score=25.41 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 011127 154 SFFLDFLSAFAFSAALLFSLN 174 (493)
Q Consensus 154 ~~~~~ll~~l~~~~~l~f~~~ 174 (493)
|+||+-|+.|+|+-..++|++
T Consensus 1 ftlKKsllLlfflG~ISlSlC 21 (46)
T PF03032_consen 1 FTLKKSLLLLFFLGTISLSLC 21 (46)
T ss_pred CcchHHHHHHHHHHHcccchH
Confidence 468888888888765555554
No 29
>PF07617 DUF1579: Protein of unknown function (DUF1579); InterPro: IPR011473 This is a family of paralogous hypothetical proteins identified in Rhodopirellula baltica that also has members in Gloeobacter violaceus, Rhizobium meliloti and Agrobacterium tumefaciens, amongst others.
Probab=22.27 E-value=2.9e+02 Score=25.97 Aligned_cols=33 Identities=33% Similarity=0.663 Sum_probs=22.3
Q ss_pred EEEEeee-CCEEeeeEEEEEeCCc-EEEEEEECCe
Q 011127 236 VYEGEYH-KGKCSGSGVYYYYLSG-RYEGDWVDGK 268 (493)
Q Consensus 236 ~YeGe~k-nGk~~G~Gv~~~~nG~-~YeG~w~nGk 268 (493)
.|+|..- ....+|.+++=|++-. .|+|.|.+..
T Consensus 52 e~~g~~~~g~~~~~~~~lGYD~~~~~yvgtWidSM 86 (159)
T PF07617_consen 52 EYEGSMPGGGPFEGIGTLGYDPAKKKYVGTWIDSM 86 (159)
T ss_pred EEEeecCCCCceEEEEEEEECCccCeEEEEEeccC
Confidence 4566666 5566777777666554 7888887774
No 30
>PTZ00121 MAEBL; Provisional
Probab=21.30 E-value=2.6e+02 Score=35.21 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 011127 458 TAANRAANAARVAAVKAVQKQM 479 (493)
Q Consensus 458 ~~A~~Aa~aA~~Aa~~Avq~~~ 479 (493)
+.|..|..|++.|++++...|.
T Consensus 1258 Eear~a~~A~r~aa~k~Ee~Rr 1279 (2084)
T PTZ00121 1258 EEARMAHFARRQAAIKAEEARK 1279 (2084)
T ss_pred HHHHHHHHHHHhHhhhhHHHHH
Confidence 4555666666666655544443
No 31
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.36 E-value=5.5e+02 Score=23.56 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=8.3
Q ss_pred chhHHHHHHHHHHHHHH
Q 011127 426 HSKVLNAVQEARRAAEK 442 (493)
Q Consensus 426 ~~kv~~avqeAr~Aa~~ 442 (493)
...+.+..++|.++.+.
T Consensus 55 ~~~I~~~l~~Ae~~~~e 71 (156)
T CHL00118 55 KEYIRKNLTKASEILAK 71 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554333
Done!