Query 011127
Match_columns 493
No_of_seqs 390 out of 1928
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 21:22:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 99.9 1.3E-27 4.4E-32 240.3 14.7 132 230-361 1-139 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.9 1.3E-27 4.3E-32 240.4 12.3 129 254-382 2-137 (293)
3 2f69_A Histone-lysine N-methyl 99.0 2.4E-10 8.2E-15 113.3 5.5 56 330-385 2-60 (261)
4 2f69_A Histone-lysine N-methyl 98.9 5.3E-10 1.8E-14 110.7 4.3 55 238-292 2-59 (261)
5 2ww5_A LYTC autolysin, 1,4-bet 56.6 1.5 5.2E-05 46.2 -1.4 35 225-266 66-101 (468)
6 2ww5_A LYTC autolysin, 1,4-bet 56.0 0.83 2.8E-05 48.3 -3.6 50 232-288 50-100 (468)
7 2bib_A CBPE, teichoic acid pho 38.2 33 0.0011 36.2 5.4 10 27-36 82-91 (547)
8 2jx6_A DD K, dermadistinctin-K 35.4 42 0.0014 22.3 3.5 19 460-478 14-32 (34)
9 3ttq_A Dextransucrase; (beta/a 30.2 1E+02 0.0036 35.8 8.0 34 344-380 166-200 (1108)
10 3ttq_A Dextransucrase; (beta/a 27.7 1.1E+02 0.0038 35.7 7.6 34 321-357 166-200 (1108)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.95 E-value=1.3e-27 Score=240.31 Aligned_cols=132 Identities=26% Similarity=0.389 Sum_probs=125.2
Q ss_pred EecCCcEEEEeeeCCEEeeeEEEEEeCCcEEEEEEECCeEeceEEEEecCCc-EEEEEEeCCeeeeEEEEEEcCCCEEEE
Q 011127 230 VYSNGDVYEGEYHKGKCSGSGVYYYYLSGRYEGDWVDGKYDGYGVETWARGS-RYRGQYRQGLRHGFGVYRFYTGDVYAG 308 (493)
Q Consensus 230 ~~~nG~~YeGe~knGk~~G~Gv~~~~nG~~YeG~w~nGk~~G~G~~~y~dG~-~YeG~f~nG~rhG~G~~~~~nG~~YeG 308 (493)
+|+||++|+|+|++|++||.|++++++|.+|+|+|+||++||.|+++|+||. +|+|+|++|++||.|+++++||.+|+|
T Consensus 1 ~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G 80 (293)
T 1h3i_A 1 FFFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVG 80 (293)
T ss_dssp CCSSSCCCCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEE
T ss_pred CcCCCCEEEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEE
Confidence 3789999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred Eee-cCCccCc-cccccccCc-ceeeeeecCeee-eeeece--ecCCcceeEEeeCCee
Q 011127 309 EWS-NGQSHGC-GVHTCEDGS-RYVGEFKWGVKH-GLGHYH--FRNGDTYAGEYFADKM 361 (493)
Q Consensus 309 ~w~-nG~~~G~-G~~~~~dG~-~Y~G~fk~G~~~-G~G~~~--~~nG~~Y~Gew~ngkr 361 (493)
+|+ +|+++|. |+++++||. .|+|+|++|+++ |.|+++ ++||..+.|.|.++++
T Consensus 81 ~~~~~g~~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~~~~~~g~~~~g~w~~g~~ 139 (293)
T 1h3i_A 81 EVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSV 139 (293)
T ss_dssp ECCTTSCSCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEEEECTTTSCEEEECSSCCE
T ss_pred EEeECCeEeCCeEEEEECCCCEEEEEEEECCEEEccceEEEEecCCcceEEeEEcCCce
Confidence 999 9999999 999999999 599999999999 999988 7899999999988776
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.94 E-value=1.3e-27 Score=240.40 Aligned_cols=129 Identities=22% Similarity=0.330 Sum_probs=68.4
Q ss_pred EeCCcEEEEEEECCeEeceEEEEecCCcEEEEEEeCCeeeeEEEEEEcCCC-EEEEEeecCCccCccccccccCcceeee
Q 011127 254 YYLSGRYEGDWVDGKYDGYGVETWARGSRYRGQYRQGLRHGFGVYRFYTGD-VYAGEWSNGQSHGCGVHTCEDGSRYVGE 332 (493)
Q Consensus 254 ~~nG~~YeG~w~nGk~~G~G~~~y~dG~~YeG~f~nG~rhG~G~~~~~nG~-~YeG~w~nG~~~G~G~~~~~dG~~Y~G~ 332 (493)
|+||.+|+|+|+||++||.|+++|+||.+|+|+|++|++||.|+++++||. +|+|+|++|+++|.|+++++||.+|+|+
T Consensus 2 ~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G~ 81 (293)
T 1h3i_A 2 FFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVGE 81 (293)
T ss_dssp CSSSCCCCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEEE
T ss_pred cCCCCEEEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEEE
Confidence 455556666666666666666666666666666666666666666655555 5555555555555555555544444444
Q ss_pred ee-cCeeeee-eeceecCCc-ceeEEeeCCeee-eecEEE--eeCCCEEEEEEcCC
Q 011127 333 FK-WGVKHGL-GHYHFRNGD-TYAGEYFADKMH-GFGVYR--FANGHRYEGAWHEG 382 (493)
Q Consensus 333 fk-~G~~~G~-G~~~~~nG~-~Y~Gew~ngkr~-G~Gv~~--~~nG~~YeG~w~ng 382 (493)
|+ +|++||. |+++++||. .|+|+|++|+++ |.|+++ ++||..+.|.|.++
T Consensus 82 ~~~~g~~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~~~~~~g~~~~g~w~~g 137 (293)
T 1h3i_A 82 VNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGN 137 (293)
T ss_dssp CCTTSCSCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEEEECTTTSCEEEECSSC
T ss_pred EeECCeEeCCeEEEEECCCCEEEEEEEECCEEEccceEEEEecCCcceEEeEEcCC
Confidence 44 4444444 444444444 244444444444 444444 34444444444433
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.99 E-value=2.4e-10 Score=113.25 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=39.6
Q ss_pred eeeeecCeeeeeeeceecCCcceeEEee-CCeeeee-cEEEeeCCCE-EEEEEcCCeee
Q 011127 330 VGEFKWGVKHGLGHYHFRNGDTYAGEYF-ADKMHGF-GVYRFANGHR-YEGAWHEGRRQ 385 (493)
Q Consensus 330 ~G~fk~G~~~G~G~~~~~nG~~Y~Gew~-ngkr~G~-Gv~~~~nG~~-YeG~w~ngk~~ 385 (493)
.|+|++|++||.|.++|+||.+|+|+|. +|.+||. |+|+|+||.+ |+|+|.+|.+.
T Consensus 2 ~g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~~ 60 (261)
T 2f69_A 2 AMGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMI 60 (261)
T ss_dssp ---------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEEE
T ss_pred CceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcEe
Confidence 3778888888888888888888888888 8888888 8888888887 88888888763
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.91 E-value=5.3e-10 Score=110.75 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=43.7
Q ss_pred EEeeeCCEEeeeEEEEEeCCcEEEEEEE-CCeEece-EEEEecCCcE-EEEEEeCCee
Q 011127 238 EGEYHKGKCSGSGVYYYYLSGRYEGDWV-DGKYDGY-GVETWARGSR-YRGQYRQGLR 292 (493)
Q Consensus 238 eGe~knGk~~G~Gv~~~~nG~~YeG~w~-nGk~~G~-G~~~y~dG~~-YeG~f~nG~r 292 (493)
.|+|++|++||.|+++|++|++|+|+|. +|.++|. |+++|+||.+ |+|+|.+|.+
T Consensus 2 ~g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 2 AMGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 59 (261)
T ss_dssp ---------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred CceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcE
Confidence 3899999999999999999999999999 9999999 9999999998 9999999966
No 5
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Probab=56.62 E-value=1.5 Score=46.23 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=18.5
Q ss_pred eEEEEEecCCcEEEEeeeCCEEeeeEEEEE-eCCcEEEEEEEC
Q 011127 225 GCWVQVYSNGDVYEGEYHKGKCSGSGVYYY-YLSGRYEGDWVD 266 (493)
Q Consensus 225 G~~~~~~~nG~~YeGe~knGk~~G~Gv~~~-~nG~~YeG~w~n 266 (493)
|.|-.+.++|..-.|.|.+ .+++ ++|....|.|..
T Consensus 66 g~wyY~~~~G~~~~~~w~~-------~Yy~~~~G~m~~g~W~~ 101 (468)
T 2ww5_A 66 KAWFYINSDGRYSQNEWHG-------NYYLKSGGYMAQNEWIY 101 (468)
T ss_dssp TEEEEECTTSBBCCSEEET-------TEEECGGGCBCCSEEEE
T ss_pred CcEEEEcCCCCEeEccccc-------eEEECCCCCEEeCeEEE
Confidence 5555555666655666641 2333 344455666653
No 6
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Probab=55.95 E-value=0.83 Score=48.27 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=25.2
Q ss_pred cCCcEEEEeeeCCEEeeeEEEEEeCCcEEEEEEECCeEeceEEEEe-cCCcEEEEEEe
Q 011127 232 SNGDVYEGEYHKGKCSGSGVYYYYLSGRYEGDWVDGKYDGYGVETW-ARGSRYRGQYR 288 (493)
Q Consensus 232 ~nG~~YeGe~knGk~~G~Gv~~~~nG~~YeG~w~nGk~~G~G~~~y-~dG~~YeG~f~ 288 (493)
++|..-.+.|.....+|.-.++.++|..-.|.|.+ ..++ ++|....|.|.
T Consensus 50 ~~G~~~~~~w~~~~~~g~wyY~~~~G~~~~~~w~~-------~Yy~~~~G~m~~g~W~ 100 (468)
T 2ww5_A 50 DDGSKAQSEWIFDNYYKAWFYINSDGRYSQNEWHG-------NYYLKSGGYMAQNEWI 100 (468)
T ss_dssp SSSCBCCSEEEEETTTTEEEEECTTSBBCCSEEET-------TEEECGGGCBCCSEEE
T ss_pred CCCCEeeeeEEEECCCCcEEEEcCCCCEeEccccc-------eEEECCCCCEEeCeEE
Confidence 46665566665322223444444556566677752 2222 45555555554
No 7
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=38.18 E-value=33 Score=36.18 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=5.8
Q ss_pred CCCcchhhhh
Q 011127 27 LLSSIHQKHQ 36 (493)
Q Consensus 27 ~~~~~~~~~~ 36 (493)
+.+|.|.-|-
T Consensus 82 ilTH~H~DHi 91 (547)
T 2bib_A 82 LVTHTHSDHI 91 (547)
T ss_dssp ECCCSCHHHH
T ss_pred EEcCCCcccc
Confidence 4556666664
No 8
>2jx6_A DD K, dermadistinctin-K; peptide, alpha helix, amphipathic character, C-terminal carboxyamidation, membrane peptide; NMR {Phyllomedusa distincta} PDB: 2k9b_A
Probab=35.44 E-value=42 Score=22.26 Aligned_cols=19 Identities=47% Similarity=0.434 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011127 460 ANRAANAARVAAVKAVQKQ 478 (493)
Q Consensus 460 A~~Aa~aA~~Aa~~Avq~~ 478 (493)
|..|+-+|-.|++.||.+.
T Consensus 14 a~aaakAAgkAal~av~ea 32 (34)
T 2jx6_A 14 AKAAAKAAGKAALNAVSEA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444555566666665544
No 9
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*
Probab=30.17 E-value=1e+02 Score=35.83 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=17.7
Q ss_pred ceecCCcceeEEeeCCeeeeecEEEe-eCCCEEEEEEc
Q 011127 344 YHFRNGDTYAGEYFADKMHGFGVYRF-ANGHRYEGAWH 380 (493)
Q Consensus 344 ~~~~nG~~Y~Gew~ngkr~G~Gv~~~-~nG~~YeG~w~ 380 (493)
+.-.+|....| |.. ..|.--++. .+|.+..|.|.
T Consensus 166 Yfd~dG~M~TG-W~~--IdGkwYYFdpsdG~M~tG~~v 200 (1108)
T 3ttq_A 166 YADKQNQLVKG-LVT--VNGALQYFDNATGNQIKNQQV 200 (1108)
T ss_dssp EECTTSCBCCE-EEE--ETTEEEEECTTTCCBCCSEEE
T ss_pred EECCCCCEeee-eEE--ECCEEEEEECCCCcEEeCceE
Confidence 33456666666 331 233333333 37777777654
No 10
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*
Probab=27.66 E-value=1.1e+02 Score=35.67 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=16.6
Q ss_pred cccccCcceeeeeecCeeeeeeecee-cCCcceeEEee
Q 011127 321 HTCEDGSRYVGEFKWGVKHGLGHYHF-RNGDTYAGEYF 357 (493)
Q Consensus 321 ~~~~dG~~Y~G~fk~G~~~G~G~~~~-~nG~~Y~Gew~ 357 (493)
+..++|.+..|... ..|.--++. .+|....|.|.
T Consensus 166 Yfd~dG~M~TGW~~---IdGkwYYFdpsdG~M~tG~~v 200 (1108)
T 3ttq_A 166 YADKQNQLVKGLVT---VNGALQYFDNATGNQIKNQQV 200 (1108)
T ss_dssp EECTTSCBCCEEEE---ETTEEEEECTTTCCBCCSEEE
T ss_pred EECCCCCEeeeeEE---ECCEEEEEECCCCcEEeCceE
Confidence 33456666666222 223222333 36777777653
Done!