Query 011127
Match_columns 493
No_of_seqs 390 out of 1928
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 21:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011127.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011127hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f69a1 b.76.2.1 (A:116-193) H 79.6 1.6 0.00012 32.9 5.5 48 362-409 1-51 (78)
2 d2f69a1 b.76.2.1 (A:116-193) H 48.0 7.9 0.00057 28.9 3.7 15 272-286 3-17 (78)
3 d2qqra2 b.34.9.1 (A:956-1011) 13.3 1.5E+02 0.011 20.4 4.8 11 346-356 12-22 (56)
4 d1pbya5 b.61.4.1 (A:166-273) Q 12.7 2.9E+02 0.021 21.3 10.0 47 218-265 19-69 (108)
5 d1rwia_ b.68.9.1 (A:) Serine/t 12.7 3.5E+02 0.025 22.2 10.4 61 341-407 185-247 (260)
6 d1jmxa5 b.61.4.1 (A:163-281) Q 12.3 3.1E+02 0.023 21.4 9.6 49 217-265 28-81 (119)
7 d1rwia_ b.68.9.1 (A:) Serine/t 7.9 5.2E+02 0.038 21.0 10.9 21 387-407 185-205 (260)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 6.9 1.7E+02 0.013 18.1 2.8 19 154-172 14-32 (37)
9 d1nekc_ f.21.2.2 (C:) Succinat 6.1 5.2E+02 0.038 19.6 6.4 14 110-123 22-35 (129)
10 d1ei1a1 d.14.1.3 (A:221-392) D 5.6 6.7E+02 0.049 20.1 7.6 16 424-439 120-135 (172)
No 1
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.59 E-value=1.6 Score=32.87 Aligned_cols=48 Identities=21% Similarity=0.410 Sum_probs=39.7
Q ss_pred eeecEEEeeCCCEEEEEEc-CCeeeecEE-EEEcCCcE-EEEEEECCEeec
Q 011127 362 HGFGVYRFANGHRYEGAWH-EGRRQGLGM-YTFRNGET-QSGHWQNGILDI 409 (493)
Q Consensus 362 ~G~Gv~~~~nG~~YeG~w~-ngk~~G~G~-~~~~dG~~-~eG~w~nG~l~~ 409 (493)
||..-++++||....|+-. +|.+.|.-+ |.+||+++ ..|.|.+|.++.
T Consensus 1 ~G~Cw~y~pdGGslvG~vne~gEmtGd~IAYvYPD~~talyGsF~dgemi~ 51 (78)
T d2f69a1 1 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIE 51 (78)
T ss_dssp CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred CceeEEEeCCCCEEEeeecCCCccccceEEEEcCCCeEEEEEEeeccceee
Confidence 5667778899999899876 588888887 77899885 889999999874
No 2
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.96 E-value=7.9 Score=28.90 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=6.2
Q ss_pred eEEEEecCCcEEEEE
Q 011127 272 YGVETWARGSRYRGQ 286 (493)
Q Consensus 272 ~G~~~y~dG~~YeG~ 286 (493)
..-.+++||....|+
T Consensus 3 ~Cw~y~pdGGslvG~ 17 (78)
T d2f69a1 3 VCWIYYPDGGSLVGE 17 (78)
T ss_dssp CEEEECTTSCEEEEC
T ss_pred eeEEEeCCCCEEEee
Confidence 333444444444443
No 3
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.32 E-value=1.5e+02 Score=20.42 Aligned_cols=11 Identities=18% Similarity=0.854 Sum_probs=5.0
Q ss_pred ecCCcceeEEe
Q 011127 346 FRNGDTYAGEY 356 (493)
Q Consensus 346 ~~nG~~Y~Gew 356 (493)
|.||..|.+.|
T Consensus 12 W~DG~~y~A~f 22 (56)
T d2qqra2 12 WTDGQVYGAKF 22 (56)
T ss_dssp CTTSCEEEEEE
T ss_pred cCCCCEEEEEE
Confidence 34444444444
No 4
>d1pbya5 b.61.4.1 (A:166-273) Quinohemoprotein amine dehydrogenase A chain, domain 3 {Paracoccus denitrificans [TaxId: 266]}
Probab=12.71 E-value=2.9e+02 Score=21.28 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=24.1
Q ss_pred CCCCceeeEEEEEecCCcEE----EEeeeCCEEeeeEEEEEeCCcEEEEEEE
Q 011127 218 LEKRGNSGCWVQVYSNGDVY----EGEYHKGKCSGSGVYYYYLSGRYEGDWV 265 (493)
Q Consensus 218 ~ek~~~~G~~~~~~~nG~~Y----eGe~knGk~~G~Gv~~~~nG~~YeG~w~ 265 (493)
+.++.++|.-... +.|+-| +|.|.+|...|.|.-...+|....|+.+
T Consensus 19 pgkG~~~G~mtv~-~agd~Y~v~~~~~yadGs~~~~G~a~vytgyEWRas~~ 69 (108)
T d1pbya5 19 PGRGDYTGRLVLK-KAGEDYEVTMTLDFADGSRSFSGTGRILGAGEWRATLS 69 (108)
T ss_dssp TTTEEEEEEEEEE-EETTEEEEEEEEECSSCEEEEEEEEEEETTTEEEEEEE
T ss_pred CCCcceEEEEEEc-cCCCCcEEEEEEEEcCCcccccceEEEEeccEEEEEEe
Confidence 4555666665432 334434 5666666555555554444443333333
No 5
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.68 E-value=3.5e+02 Score=22.22 Aligned_cols=61 Identities=10% Similarity=-0.039 Sum_probs=28.9
Q ss_pred eeeceecCCcceeEEeeCCeeeeecEEEeeCCCEEEEEEcC--CeeeecEEEEEcCCcEEEEEEECCEe
Q 011127 341 LGHYHFRNGDTYAGEYFADKMHGFGVYRFANGHRYEGAWHE--GRRQGLGMYTFRNGETQSGHWQNGIL 407 (493)
Q Consensus 341 ~G~~~~~nG~~Y~Gew~ngkr~G~Gv~~~~nG~~YeG~w~n--gk~~G~G~~~~~dG~~~eG~w~nG~l 407 (493)
.|....++|..|..++.+++.. .+.+++..-.-.-.. ..++ |+.+.++|.+|...|.++..
T Consensus 185 ~gi~~d~~g~l~vsd~~~~~i~----~~~~~~~~~~~~~~~~~~~P~--~i~~d~~g~l~vad~~~~rI 247 (260)
T d1rwia_ 185 WGIAVDEAGTVYVTEHNTNQVV----KLLAGSTTSTVLPFTGLNTPL--AVAVDSDRTVYVADRGNDRV 247 (260)
T ss_dssp EEEEECTTCCEEEEETTTTEEE----EECTTCSCCEECCCCSCCCEE--EEEECTTCCEEEEEGGGTEE
T ss_pred ccceeeeeeeeeeeecCCCEEE----EEeCCCCeEEEEccCCCCCeE--EEEEeCCCCEEEEECCCCEE
Confidence 3444556667777766655421 112223211100011 1232 45556677777777766654
No 6
>d1jmxa5 b.61.4.1 (A:163-281) Quinohemoprotein amine dehydrogenase A chain, domain 3 {Pseudomonas putida [TaxId: 303]}
Probab=12.25 E-value=3.1e+02 Score=21.42 Aligned_cols=49 Identities=27% Similarity=0.423 Sum_probs=29.8
Q ss_pred cCCCCceeeEEEEEecCCcEE----EEeeeCCEE-eeeEEEEEeCCcEEEEEEE
Q 011127 217 KLEKRGNSGCWVQVYSNGDVY----EGEYHKGKC-SGSGVYYYYLSGRYEGDWV 265 (493)
Q Consensus 217 ~~ek~~~~G~~~~~~~nG~~Y----eGe~knGk~-~G~Gv~~~~nG~~YeG~w~ 265 (493)
.+.++.++|.-...-..++.| +|.|.||.. .|.|.....+|....++..
T Consensus 28 ~PgkG~~~G~m~v~~~~~D~Y~v~~~~~~aDGs~~~g~G~aivYtGyEWRa~l~ 81 (119)
T d1jmxa5 28 MLAKGDVRGVMSVTPDQGDTFKVEVKGAYADGTPFNGSGSAILYNGYEWRGNVK 81 (119)
T ss_dssp ETTTEEEEEEEEEEECSTTEEEEEEEEEETTSCEEEEEEEEEEETTTEEEEEEE
T ss_pred CCCCcceEEEEEEecCCCCccEEEEEEEEcCCCeeccceeEEEecceEEEEEEe
Confidence 356677888765544456655 677777755 6777766555544444444
No 7
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.90 E-value=5.2e+02 Score=20.99 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=13.6
Q ss_pred cEEEEEcCCcEEEEEEECCEe
Q 011127 387 LGMYTFRNGETQSGHWQNGIL 407 (493)
Q Consensus 387 ~G~~~~~dG~~~eG~w~nG~l 407 (493)
.|+.+.++|..+...|.++.+
T Consensus 185 ~gi~~d~~g~l~vsd~~~~~i 205 (260)
T d1rwia_ 185 WGIAVDEAGTVYVTEHNTNQV 205 (260)
T ss_dssp EEEEECTTCCEEEEETTTTEE
T ss_pred ccceeeeeeeeeeeecCCCEE
Confidence 455555777777777766654
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.91 E-value=1.7e+02 Score=18.15 Aligned_cols=19 Identities=32% Similarity=0.193 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 011127 154 SFFLDFLSAFAFSAALLFS 172 (493)
Q Consensus 154 ~~~~~ll~~l~~~~~l~f~ 172 (493)
++++-+-+.++|+++.+||
T Consensus 14 rtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4454444556666655554
No 9
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=6.12 E-value=5.2e+02 Score=19.55 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q 011127 110 IAAKSAAFRLLRRC 123 (493)
Q Consensus 110 ~~~~~~~~~~~~~~ 123 (493)
.++.++.++|+-=+
T Consensus 22 ~t~~~SI~HRisGv 35 (129)
T d1nekc_ 22 ITAIASILHRVSGV 35 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666667666543
No 10
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=5.56 E-value=6.7e+02 Score=20.09 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=7.9
Q ss_pred ccchhHHHHHHHHHHH
Q 011127 424 VYHSKVLNAVQEARRA 439 (493)
Q Consensus 424 ~~~~kv~~avqeAr~A 439 (493)
+-.+.+..+|+.....
T Consensus 120 L~n~~v~~~v~~~v~~ 135 (172)
T d1ei1a1 120 LVSSEVKSAVEQQMNE 135 (172)
T ss_dssp BCCHHHHHHHHHHHHH
T ss_pred ecChhhhhHHhHHHHH
Confidence 3345555555555433
Done!