Your job contains 1 sequence.
>011128
MAAAATEAPRSSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKG
EEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQD
LQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPF
QGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLS
MLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAM
ISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQS
TVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSE
SAAAPPPASDVQEPILPLPSTTERKPYGAPTSTQYGYRGGRGRGRGRGNEVCLSCCPNVI
AAHVRLYFFFFHN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011128
(493 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2011410 - symbol:DCP5 "AT1G26110" species:3702... 367 3.2e-33 1
TAIR|locus:2158470 - symbol:DCP5-L "decapping 5-like" spe... 208 9.9e-17 2
UNIPROTKB|A0A8M2 - symbol:lsm14a-a "Protein LSM14 homolog... 161 3.6e-12 3
ZFIN|ZDB-GENE-040426-2462 - symbol:lsm14ab "LSM14 homolog... 156 1.6e-11 2
UNIPROTKB|F1NEM2 - symbol:LSM14A "Uncharacterized protein... 160 2.0e-11 2
UNIPROTKB|Q68FI1 - symbol:lsm14b-a "Protein LSM14 homolog... 154 5.5e-11 2
ASPGD|ASPL0000061577 - symbol:AN1055 species:162425 "Emer... 137 6.9e-11 3
UNIPROTKB|G4MRF0 - symbol:MGG_02405 "Uncharacterized prot... 157 9.7e-11 2
UNIPROTKB|F1MSA5 - symbol:LSM14A "Protein LSM14 homolog A... 176 1.8e-10 1
UNIPROTKB|Q3MHF8 - symbol:LSM14A "Protein LSM14 homolog A... 175 2.4e-10 1
UNIPROTKB|Q566L7 - symbol:lsm14b "Protein LSM14 homolog B... 154 5.0e-10 2
MGI|MGI:3040677 - symbol:Lsm14b "LSM14 homolog B (SCD6, S... 152 8.7e-10 2
UNIPROTKB|Q9BX40 - symbol:LSM14B "Protein LSM14 homolog B... 152 8.7e-10 2
FB|FBgn0041775 - symbol:tral "trailer hitch" species:7227... 137 1.3e-09 2
UNIPROTKB|Q8ND56 - symbol:LSM14A "Protein LSM14 homolog A... 167 1.9e-09 1
UNIPROTKB|Q5R4R4 - symbol:LSM14A "Protein LSM14 homolog A... 167 1.9e-09 1
RGD|1305695 - symbol:Lsm14a "LSM14A, SCD6 homolog A (S. c... 165 3.3e-09 2
MGI|MGI:1914320 - symbol:Lsm14a "LSM14 homolog A (SCD6, S... 164 4.3e-09 2
UNIPROTKB|Q6NVR8 - symbol:lsm14a "Protein LSM14 homolog A... 160 1.2e-08 1
ZFIN|ZDB-GENE-040426-1567 - symbol:lsm14aa "LSM14 homolog... 148 1.4e-08 2
ZFIN|ZDB-GENE-040426-779 - symbol:lsm14b "LSM14B, SCD6 ho... 148 2.1e-08 2
UNIPROTKB|Q8AVJ2 - symbol:lsm14a-b "Protein LSM14 homolog... 160 2.1e-08 2
UNIPROTKB|Q9YH12 - symbol:lsm14 "Protein LSM14 homolog" s... 157 2.5e-08 1
UNIPROTKB|Q498K9 - symbol:lsm14b-b "Protein LSM14 homolog... 155 2.7e-08 1
POMBASE|SPBC800.09 - symbol:sum2 "G2/M transition checkpo... 154 4.5e-08 1
TAIR|locus:2140376 - symbol:AT4G19360 "AT4G19360" species... 134 3.3e-07 2
CGD|CAL0000511 - symbol:orf19.6250 species:5476 "Candida ... 135 4.0e-06 1
WB|WBGene00012484 - symbol:car-1 species:6239 "Caenorhabd... 132 8.2e-06 1
>TAIR|locus:2011410 [details] [associations]
symbol:DCP5 "AT1G26110" species:3702 "Arabidopsis
thaliana" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010606 "positive regulation of cytoplasmic mRNA processing
body assembly" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0031087 "deadenylation-independent
decapping of nuclear-transcribed mRNA" evidence=IMP] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IMP]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006486 "protein
glycosylation" evidence=RCA] [GO:0006487 "protein N-linked
glycosylation" evidence=RCA] EMBL:CP002684 GO:GO:0005829
GO:GO:0042803 GO:GO:0017148 GO:GO:0006397 EMBL:AC079829
EMBL:AC084221 GO:GO:0000932 GO:GO:0033962 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0010606 GO:GO:0031087 HOGENOM:HOG000029862
InterPro:IPR025762 InterPro:IPR019050 InterPro:IPR025761
InterPro:IPR025609 InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701
PROSITE:PS51512 PROSITE:PS51513 PROSITE:PS51536 EMBL:AF361833
EMBL:AY078047 EMBL:AY093191 EMBL:AK317540 IPI:IPI00527176
IPI:IPI00541882 IPI:IPI00938561 PIR:B86387 RefSeq:NP_001154367.1
RefSeq:NP_564239.1 UniGene:At.21105 UniGene:At.73006
ProteinModelPortal:Q9C658 SMR:Q9C658 IntAct:Q9C658 STRING:Q9C658
PRIDE:Q9C658 ProMEX:Q9C658 EnsemblPlants:AT1G26110.1 GeneID:839152
KEGG:ath:AT1G26110 TAIR:At1g26110 eggNOG:NOG235666
InParanoid:Q9C658 OMA:TIDRESQ PhylomeDB:Q9C658
ProtClustDB:CLSN2687962 Genevestigator:Q9C658 Uniprot:Q9C658
Length = 611
Score = 367 (134.2 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 146/445 (32%), Positives = 184/445 (41%)
Query: 24 LISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRG 82
LISLTSKSEIRYEG+L+NINT+ESSIGL+N R +G +K GPQVPPSDK+YEYILFRG
Sbjct: 21 LISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPSDKVYEYILFRG 80
Query: 83 SDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQD-LQVKSSPPVQTTTSI-----H 136
+DIK L + P + D ++I+ + S P + S+ H
Sbjct: 81 TDIKD-LQVKASPPVQPPASTINND---PAIIQSHYPSPMPTSGSLPSTASGSLPDISSH 136
Query: 137 NDPAIIQSHYSQAAIASTTLPSGT----GSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGS 192
N Q A+ P G G+ P P G PP G P L+Q
Sbjct: 137 NGQPGQHGMGFQNAMPLYQ-PGGNLGSWGASPQPPMYWQ--GFYTPPPNGLPQLHQQSLI 193
Query: 193 LGAWGSSPMPTTNGAGLAMPMYWQGFYGSP--NGXXXXXXXXXXXXXXXXXXXXXXQSMQ 250
G PMP + L P+ + F P G M
Sbjct: 194 RPPHGL-PMPNS----LQQPLQYPNFNTPPPPTGSSSLQGSSLPEAPSSLFPFSTSSQML 248
Query: 251 YPAMNP--SLP--TGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSST 306
P+ P LP T S+L ++ + P L ++ LLS P + + T
Sbjct: 249 APSSLPFPGLPPVTLSSSLQSTLQSAPSPSLASEMAPP---LLSNKAPITAPPTLPQD-T 304
Query: 307 NLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQXXXXXXX 366
NL+ ST T T A ST LPL ++P V GPI P Q
Sbjct: 305 NLLSFSLST-TRATEA-STGLPLS---------------NKPSVVTGPISPPQTTPLTSA 347
Query: 367 XXXXXXXXILNDGIMPSLVTPGQLLQPGLPXXXXXXXXXXXXKDVEVVQLXXXXXXXXXX 426
I D P LVTPGQLLQ G KDVEVVQ+
Sbjct: 348 PVAGVSSSISQDKPKPLLVTPGQLLQSGSSAVSLSPPSTNADKDVEVVQVSSSAGLEQSV 407
Query: 427 -XXXDVQEPILPLPSTTE--RKPYG 448
+ Q PILPLPS+ +KP G
Sbjct: 408 PVTSEAQPPILPLPSSARPTQKPNG 432
>TAIR|locus:2158470 [details] [associations]
symbol:DCP5-L "decapping 5-like" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM]
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0042803 GO:GO:0017148
GO:GO:0006397 EMBL:AB020744 GO:GO:0000932 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0010606 GO:GO:0031087 EMBL:AY735697
EMBL:AY954874 EMBL:BT022113 IPI:IPI00518251 RefSeq:NP_199346.1
UniGene:At.50505 ProteinModelPortal:Q9FH77 SMR:Q9FH77 PRIDE:Q9FH77
EnsemblPlants:AT5G45330.1 GeneID:834569 KEGG:ath:AT5G45330
TAIR:At5g45330 eggNOG:NOG252518 HOGENOM:HOG000029862
InParanoid:Q9FH77 OMA:YEIRYEG PhylomeDB:Q9FH77
ProtClustDB:CLSN2916870 Genevestigator:Q9FH77 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 Uniprot:Q9FH77
Length = 571
Score = 208 (78.3 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 41/84 (48%), Positives = 59/84 (70%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGS 83
ISL SK EIRYEG+L+++N ++S++GL+N R +G +K GPQ+PP DK+Y+YILFRGS
Sbjct: 38 ISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYDYILFRGS 97
Query: 84 DIKHCLLTITGDAISGPRLSQTRD 107
DIK + + A S + +D
Sbjct: 98 DIKDLQVNPSPSAQSRQEIQSEQD 121
Score = 69 (29.3 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 248 SMQYPAMNPSLPTGVSNL---P--ASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMIS 302
S Q + NPS P G + L P AS + PP +S + + P P ++
Sbjct: 269 SNQSYSSNPS-PLGQTQLHTPPGLASVSSNLSPPSEAQLSAPNIQKIYPSAPQAIGKVVY 327
Query: 303 DSSTNLIPDKASTQTLPTAAPSTSLPLVP-PLN 334
D +N P ++ LP A S S P++P PL+
Sbjct: 328 DPQSNH-PHRSIPHELPAVA-SNSAPVIPGPLS 358
Score = 55 (24.4 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 24/85 (28%), Positives = 36/85 (42%)
Query: 128 PVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLY 187
PV ++++I N P II Y + I S P ++Q S P G L+
Sbjct: 229 PVSSSSTIPNGPQIID--YFSSPIMGLVDDSSQVVTRSPDVSSNQSYSSNPSPLGQTQLH 286
Query: 188 QPGGSLGAWGSSPMPTTNGAGLAMP 212
P G L + S+ P + A L+ P
Sbjct: 287 TPPG-LASVSSNLSPPSE-AQLSAP 309
Score = 39 (18.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 17/59 (28%), Positives = 24/59 (40%)
Query: 123 VKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQ 181
V SP V + S ++P S Q + + P G S+ S S+ LS P Q
Sbjct: 261 VTRSPDVSSNQSYSSNP----SPLGQTQLHT---PPGLASVSSNLSPPSEAQLSAPNIQ 312
>UNIPROTKB|A0A8M2 [details] [associations]
symbol:lsm14a-a "Protein LSM14 homolog A-A" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0017151 "DEAD/H-box
RNA helicase binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
GO:GO:0007275 GO:GO:0005737 GO:GO:0043234 GO:GO:0017148
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
InterPro:IPR025762 InterPro:IPR019050 InterPro:IPR025761
InterPro:IPR025609 InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701
PROSITE:PS51512 PROSITE:PS51513 PROSITE:PS51536 EMBL:AB257699
EMBL:BC080031 RefSeq:NP_001087507.1 UniGene:Xl.47199
ProteinModelPortal:A0A8M2 SMR:A0A8M2 IntAct:A0A8M2 PRIDE:A0A8M2
GeneID:447331 KEGG:xla:447331 CTD:447331 Xenbase:XB-GENE-5955717
HOVERGEN:HBG054326 Uniprot:A0A8M2
Length = 471
Score = 161 (61.7 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+I+EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEIFEYIIFRGSD 71
Query: 85 IK 86
IK
Sbjct: 72 IK 73
Score = 60 (26.2 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 117 DIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPD-PT-SQTSQLG 174
DI+DL V P Q S+ DPAI+QS ++ +S S G P SQ +
Sbjct: 71 DIKDLTVCEPPKPQC--SLPQDPAIVQSSLGSSSASSFQSVSSYGPFGRMPAYSQFNTGP 128
Query: 175 LSRPPFQGNPPLYQPGGSLGAWGSSPMPTTN 205
L P F G + G SL ++G+ +T+
Sbjct: 129 LVGPQF-GAVGV---GSSLTSFGAETTSSTS 155
Score = 51 (23.0 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 290 SPMLPAQSSAMISDS-STNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAP 344
SP+ + S I + T P ST T+ +P S P VP S I KTA +P
Sbjct: 184 SPLDSLRKSPNIEQAVQTAAAPHAPSTATVGRRSPVLSRP-VP---SSIQKTAESP 235
>ZFIN|ZDB-GENE-040426-2462 [details] [associations]
symbol:lsm14ab "LSM14 homolog Ab (SCD6, S.
cerevisiae)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-040426-2462 InterPro:IPR010920 SUPFAM:SSF50182
InterPro:IPR025762 InterPro:IPR019050 InterPro:IPR025761
InterPro:IPR025609 InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701
PROSITE:PS51512 PROSITE:PS51513 PROSITE:PS51536 HOVERGEN:HBG054326
EMBL:BC047185 IPI:IPI00485518 UniGene:Dr.75143
ProteinModelPortal:Q802V4 SMR:Q802V4 PRIDE:Q802V4 NextBio:20818310
ArrayExpress:Q802V4 Bgee:Q802V4 Uniprot:Q802V4
Length = 448
Score = 156 (60.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEGVL+ I+TE S++ L + + +PP D ++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGVLYTIDTENSTVALAKVKSFGTEDRPTDRPIPPRDDVFEYIIFRGSD 71
Query: 85 IK 86
IK
Sbjct: 72 IK 73
Score = 73 (30.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 31/85 (36%), Positives = 41/85 (48%)
Query: 117 DIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLS 176
DI+DL V PP + T ++ DPAI+QS S A+ A T PS P + SQ
Sbjct: 71 DIKDLTV-CEPP-KPTCNLPQDPAIVQS--SLASTAGPTAPSFQSYSPFSRAPYSQ---- 122
Query: 177 RPPFQGNPPLYQP-GGSLGAWGSSP 200
F P + Q G ++ A SSP
Sbjct: 123 ---FTSTPLVPQAFGAAVTAGRSSP 144
>UNIPROTKB|F1NEM2 [details] [associations]
symbol:LSM14A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] GO:GO:0043231 GO:GO:0000932 GO:GO:0010494
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 GeneTree:ENSGT00390000004174
OMA:RSSPQID EMBL:AADN02031790 EMBL:AADN02031791 EMBL:AADN02031792
IPI:IPI00585275 Ensembl:ENSGALT00000007898 ArrayExpress:F1NEM2
Uniprot:F1NEM2
Length = 463
Score = 160 (61.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD 71
Query: 85 IK 86
IK
Sbjct: 72 IK 73
Score = 68 (29.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 52/224 (23%), Positives = 80/224 (35%)
Query: 106 RDWTLRSVIRK--DIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSL 163
RD +I + DI+DL V P Q S+ DPAI+QS + +S GS
Sbjct: 58 RDEVFEYIIFRGSDIKDLTVCEPPKPQC--SLPQDPAIVQSSLGSSTTSSF---QSVGSY 112
Query: 164 PDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPN 223
P + F +P + Q G++G G S + + M GS
Sbjct: 113 -GPFGRMPAYS----QFSPSPLVGQQFGTVGVAGGSLTSFGTDSSASANMSQSTAVGS-- 165
Query: 224 GXXXXXXXXXXXXXXXXXXXXXXQSMQYPAMNPSLPTGVSNLPA-SQLAEHRP-PLMPPI 281
+ P M ++ T ++LPA + + P P P +
Sbjct: 166 AFTADARALKTQMSQGRSSPQIDHLRRSPTMEQAVQTASAHLPAPAPVGRRSPVPARPMV 225
Query: 282 STGTLNLLSPM-LPAQSSAMISDSSTNLIPDKASTQTLPTAAPS 324
S +L S A + A S N + ++ Q +P APS
Sbjct: 226 SASQKSLESQEHRRALAEAHKVSRSENELRNENKRQIVP-GAPS 268
>UNIPROTKB|Q68FI1 [details] [associations]
symbol:lsm14b-a "Protein LSM14 homolog B-A" species:8355
"Xenopus laevis" [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] GO:GO:0007275 GO:GO:0006417 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 HOVERGEN:HBG054326 EMBL:BC079811
RefSeq:NP_001087455.1 UniGene:Xl.25611 ProteinModelPortal:Q68FI1
SMR:Q68FI1 GeneID:447279 KEGG:xla:447279 Uniprot:Q68FI1
Length = 422
Score = 154 (59.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+FRGSD
Sbjct: 12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYIIFRGSD 71
Query: 85 IK 86
IK
Sbjct: 72 IK 73
Score = 69 (29.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 31/93 (33%), Positives = 42/93 (45%)
Query: 117 DIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIAS--TTLP-SGTGSLP--DPTSQTS 171
DI+D+ V PP + + ++ DPAI+QS A AS ++P S +P + TS
Sbjct: 71 DIKDITV-CEPP-KASHALPQDPAIVQSSLGSAPAASYQPSVPYSPFRGMPTYSQLAATS 128
Query: 172 QLGLSRPPFQGNPPLYQPGGSLGAWGS--SPMP 202
L G L P S GA S SP P
Sbjct: 129 LLSQQYAASLGLEKLGSPTASAGASSSCSSPSP 161
>ASPGD|ASPL0000061577 [details] [associations]
symbol:AN1055 species:162425 "Emericella nidulans"
[GO:0045947 "negative regulation of translational initiation"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IEA]
[GO:0071585 "detoxification of cadmium ion" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=IEA]
EMBL:BN001308 InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 OMA:NISCESK
EnsemblFungi:CADANIAT00001585 Uniprot:C8VTV1
Length = 552
Score = 137 (53.3 bits), Expect = 6.9e-11, Sum P(3) = 6.9e-11
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 26 SLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIG-P--QVPPSDKIYEYILFRG 82
+L SKS+IRY G L IN E S+I L+N + E + G P ++PPS +YEYI+FRG
Sbjct: 12 NLISKSDIRYVGTLHEINPEASTIALQNV-VSYGTEGRRGNPDEELPPSSSVYEYIVFRG 70
Query: 83 SDIK 86
SD+K
Sbjct: 71 SDVK 74
Score = 67 (28.6 bits), Expect = 6.9e-11, Sum P(3) = 6.9e-11
Identities = 33/112 (29%), Positives = 41/112 (36%)
Query: 116 KDIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIAST-TLPSGTGSLPDPTSQTSQLG 174
KDI + K + +DPAI+ S + +P G S P P Q
Sbjct: 74 KDISVAEDKKENAQPEPPQMPDDPAILGSVPRPGPGSGPGPVPQGLPSQPQPQQPLQQPP 133
Query: 175 LS-RPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGL-AMPMYWQGFYGSPNG 224
RPP G P Q G +G P G G AMP YG+P G
Sbjct: 134 QGPRPPPPGYPQQPQFQGYYNPYGPRYPPFPPGPGYPAMP------YGAPPG 179
Score = 62 (26.9 bits), Expect = 6.9e-11, Sum P(3) = 6.9e-11
Identities = 31/117 (26%), Positives = 38/117 (32%)
Query: 250 QYPAMNPSLPTGVSNLPASQLAEHRPPLMP---PISTGTLN--LLSPMLPAQSSAMIS-- 302
Q+P P P G P SQ A P P+ LN PA ++A S
Sbjct: 194 QFPPQVPIGPPGQHQTPPSQRAAPTAPKTTSELPVGDRPLNKPAAQDASPAVTAATESAP 253
Query: 303 DSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPV--SEPKSVPGPIMP 357
P A TA P+ P P + P S P SV P+ P
Sbjct: 254 PPPVESKPSVAEAVKATTAGPAERAPPTGPSGRAPPVIPITPAKTSAPASVNAPLAP 310
Score = 47 (21.6 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 275 PPLMP--PISTGT-LNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLP 328
PP++P P T ++ +P+ PA + + ++ I + T AA LP
Sbjct: 288 PPVIPITPAKTSAPASVNAPLAPAAVNNVTQGTAQAAISEATRAATAAVAAAMAKLP 344
Score = 44 (20.5 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 24/99 (24%), Positives = 37/99 (37%)
Query: 122 QVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSR---- 177
QV PP Q H P Q A ++ LP G L P +Q + ++
Sbjct: 198 QVPIGPPGQ-----HQTPPS-QRAAPTAPKTTSELPVGDRPLNKPAAQDASPAVTAATES 251
Query: 178 ---PPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPM 213
PP + P + + + A + P T +G A P+
Sbjct: 252 APPPPVESKPSVAEAVKATTAGPAERAPPTGPSGRAPPV 290
Score = 38 (18.4 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 157 PSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMP 202
P G G P P Q+ + PP Q P Q +S +P
Sbjct: 183 PPGQGFPPGPGQFPPQVPIG-PPGQHQTPPSQRAAPTAPKTTSELP 227
>UNIPROTKB|G4MRF0 [details] [associations]
symbol:MGG_02405 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:CM001231
InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 RefSeq:XP_003709188.1
ProteinModelPortal:G4MRF0 SMR:G4MRF0 EnsemblFungi:MGG_02405T0
GeneID:2681502 KEGG:mgr:MGG_02405 Uniprot:G4MRF0
Length = 542
Score = 157 (60.3 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 34/67 (50%), Positives = 47/67 (70%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEE----KIGPQVPPSDKIYEYIL 79
ISL SKS+IRY GVL IN+EES++ L N + +G + K ++ PSD++YEYI+
Sbjct: 9 ISLISKSDIRYVGVLHEINSEESTVSLENVKSFGTEGRKRDAGKPAEEIAPSDQVYEYIV 68
Query: 80 FRGSDIK 86
FRGSD+K
Sbjct: 69 FRGSDVK 75
Score = 67 (28.6 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 32/107 (29%), Positives = 44/107 (41%)
Query: 117 DIQDLQVKSSPPV--QTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLG 174
D++DL+++ +P V Q ++ +DPAI+ + A A P+G P G
Sbjct: 73 DVKDLRIEQAPVVKEQAPPAVPDDPAIVGARPRPGA-APAGPPAGPPGGPH--------G 123
Query: 175 LSRPPFQGNPPLYQ----PGGSLGAWG-SSPM-PTTNGAGLAMPMYW 215
PPF G P Y GG G G P P NG P W
Sbjct: 124 HHPPPFPG-APYYGNWNGQGGPAGPGGPGGPGGPGFNGFPYPPPPNW 169
Score = 38 (18.4 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 164 PDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPT 203
P P + P P PGG+ A + P PT
Sbjct: 224 PAPIGARGDKARTESPAAQQPQSKPPGGASAA--NQPAPT 261
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 122 QVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTT---LPSG------TGSLPDPTSQTSQ 172
Q +PPV + S+ A S +Q+A AS+ +P+G T ++P P + T +
Sbjct: 257 QPAPTPPVDSKPSVEEVKATAAS-LNQSAGASSANKQIPTGPKGTRITPAVPLPAALTQK 315
>UNIPROTKB|F1MSA5 [details] [associations]
symbol:LSM14A "Protein LSM14 homolog A" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] GO:GO:0043231 GO:GO:0000932 GO:GO:0010494
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 IPI:IPI00706709 UniGene:Bt.40231
OMA:QDTRSVK GeneTree:ENSGT00390000004174 EMBL:DAAA02046898
Ensembl:ENSBTAT00000000831 Uniprot:F1MSA5
Length = 463
Score = 176 (67.0 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 53/156 (33%), Positives = 81/156 (51%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD 71
Query: 85 IKHCLLTITGDAISGPRLSQTRDWTL-RSVIRKDIQDLQ-VKSSPPV--QTTTSIHNDPA 140
IK LT+ P+ S +D + +S + Q V S P T S + +
Sbjct: 72 IKD--LTVCEPP--KPQCSLPQDPAIVQSSLGSSTSSFQSVGSYGPFGRMPTYSQFSPSS 127
Query: 141 IIQSHYSQAAIASTTLPS-GT-GSLPDPTSQTSQLG 174
++ + +A ++L S GT S SQ+S +G
Sbjct: 128 LVGQQFGAVGVAGSSLTSFGTEASSSSALSQSSAVG 163
>UNIPROTKB|Q3MHF8 [details] [associations]
symbol:LSM14A "Protein LSM14 homolog A" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] GO:GO:0007275
GO:GO:0006417 GO:GO:0000932 GO:GO:0010494 GO:GO:0033962
InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 eggNOG:NOG235666 HSSP:Q7SXR4
HOVERGEN:HBG054326 EMBL:BC105253 IPI:IPI00706709
RefSeq:NP_001029826.1 UniGene:Bt.40231 ProteinModelPortal:Q3MHF8
SMR:Q3MHF8 PRIDE:Q3MHF8 GeneID:538838 KEGG:bta:538838 CTD:26065
HOGENOM:HOG000231251 InParanoid:Q3MHF8 OrthoDB:EOG4NCMD3
NextBio:20877616 Uniprot:Q3MHF8
Length = 463
Score = 175 (66.7 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 53/156 (33%), Positives = 81/156 (51%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD 71
Query: 85 IKHCLLTITGDAISGPRLSQTRDWTL-RSVIRKDIQDLQ-VKSSPPV--QTTTSIHNDPA 140
IK LT+ P+ S +D + +S + Q V S P T S + +
Sbjct: 72 IKD--LTVCEPP--KPQCSLPQDPAIVQSSLGSSTSSFQSVGSYGPFGRMPTYSQFSPSS 127
Query: 141 IIQSHYSQAAIASTTLPS-GT-GSLPDPTSQTSQLG 174
++ + +A ++L S GT S SQ+S +G
Sbjct: 128 LVGQQFGAVGVAGSSLTSFGTEASSSSALSQSSVVG 163
>UNIPROTKB|Q566L7 [details] [associations]
symbol:lsm14b "Protein LSM14 homolog B" species:8364
"Xenopus (Silurana) tropicalis" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] GO:GO:0007275 GO:GO:0006417 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 HOVERGEN:HBG054326 CTD:149986
HOGENOM:HOG000231251 EMBL:BC093463 RefSeq:NP_001025676.1
UniGene:Str.3538 ProteinModelPortal:Q566L7 SMR:Q566L7 GeneID:595068
KEGG:xtr:595068 Xenbase:XB-GENE-5893304 Bgee:Q566L7 Uniprot:Q566L7
Length = 382
Score = 154 (59.3 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+FRGSD
Sbjct: 12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYIIFRGSD 71
Query: 85 IK 86
IK
Sbjct: 72 IK 73
Score = 58 (25.5 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 117 DIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIAS 153
DI+D+ V PP + + ++ DPAI+QS A AS
Sbjct: 71 DIKDITV-CEPP-KASHALPQDPAIVQSSLGSAPSAS 105
>MGI|MGI:3040677 [details] [associations]
symbol:Lsm14b "LSM14 homolog B (SCD6, S. cerevisiae)"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] MGI:MGI:3040677 GO:GO:0007275 GO:GO:0006417
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL663067
InterPro:IPR025762 InterPro:IPR019050 InterPro:IPR025761
InterPro:IPR025609 InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701
PROSITE:PS51512 PROSITE:PS51513 PROSITE:PS51536 eggNOG:NOG235666
HOVERGEN:HBG054326 CTD:149986 HOGENOM:HOG000231251
GeneTree:ENSGT00390000004174 OMA:KCFFDNI EMBL:BC040823
IPI:IPI00229470 RefSeq:NP_808395.2 UniGene:Mm.21577
ProteinModelPortal:Q8CGC4 SMR:Q8CGC4 PhosphoSite:Q8CGC4
PaxDb:Q8CGC4 PRIDE:Q8CGC4 Ensembl:ENSMUST00000055485 GeneID:241846
KEGG:mmu:241846 InParanoid:A2AC71 OrthoDB:EOG40K80K NextBio:385162
Bgee:Q8CGC4 CleanEx:MM_LSM14B Genevestigator:Q8CGC4
GermOnline:ENSMUSG00000039108 Uniprot:Q8CGC4
Length = 385
Score = 152 (58.6 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK++IRYEG+L+ I+T+ S++ L R + PP ++IYEYI+FRGSD
Sbjct: 14 ISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYIIFRGSD 73
Query: 85 IK 86
IK
Sbjct: 74 IK 75
Score = 58 (25.5 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 117 DIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLP 157
DI+D+ V P Q T + DPAI+QS A+ AS P
Sbjct: 73 DIKDITVCEPPKAQHT--LPQDPAIVQSSLGSAS-ASPFQP 110
Score = 51 (23.0 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 157 PSGTGSLP-DPTSQTSQLG-LSRPPFQGNPPLYQPGGSLGAWG----SSPMPTTNGAGLA 210
P +LP DP S LG S PFQ + P Y P + +G SS + A L
Sbjct: 83 PKAQHTLPQDPAIVQSSLGSASASPFQPHVP-YSPFRGMPPYGQLAASSLLSQQYAASLG 141
Query: 211 MPMYWQGFYGSPNG 224
+ GF +P G
Sbjct: 142 LGA---GFPSTPVG 152
Score = 38 (18.4 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 18/104 (17%), Positives = 40/104 (38%)
Query: 252 PAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPD 311
P +LP + + +S + P P + + P +S+++S
Sbjct: 83 PKAQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFRGMPPYGQLAASSLLSQQY------ 136
Query: 312 KASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPI 355
A++ L PST + P + + ++V ++ K +P +
Sbjct: 137 -AASLGLGAGFPSTPVGKSPMVEQAVQTSSVDNLNAKKLLPSKV 179
>UNIPROTKB|Q9BX40 [details] [associations]
symbol:LSM14B "Protein LSM14 homolog B" species:9606 "Homo
sapiens" [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] GO:GO:0007275
GO:GO:0006417 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
InterPro:IPR025762 InterPro:IPR019050 InterPro:IPR025761
InterPro:IPR025609 InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701
PROSITE:PS51512 PROSITE:PS51513 PROSITE:PS51536 eggNOG:NOG235666
HOVERGEN:HBG054326 CTD:149986 HOGENOM:HOG000231251 EMBL:AK058202
EMBL:AL137077 EMBL:BC057387 EMBL:BX354437 IPI:IPI00032635
IPI:IPI00448024 IPI:IPI00471933 RefSeq:NP_653304.2
UniGene:Hs.105379 ProteinModelPortal:Q9BX40 SMR:Q9BX40
IntAct:Q9BX40 STRING:Q9BX40 PhosphoSite:Q9BX40 DMDM:71151896
PaxDb:Q9BX40 PRIDE:Q9BX40 Ensembl:ENST00000253001
Ensembl:ENST00000279068 Ensembl:ENST00000370906
Ensembl:ENST00000370915 Ensembl:ENST00000479741 GeneID:149986
KEGG:hsa:149986 UCSC:uc002ybt.2 UCSC:uc010gjy.1
GeneCards:GC20P060697 HGNC:HGNC:15887 HPA:HPA041274
neXtProt:NX_Q9BX40 PharmGKB:PA25754 InParanoid:Q9BX40 OMA:KCFFDNI
PhylomeDB:Q9BX40 ChiTaRS:LSM14B GenomeRNAi:149986 NextBio:86286
ArrayExpress:Q9BX40 Bgee:Q9BX40 CleanEx:HS_LSM14B
Genevestigator:Q9BX40 GermOnline:ENSG00000149657 Uniprot:Q9BX40
Length = 385
Score = 152 (58.6 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK++IRYEG+L+ I+T+ S++ L R + PP ++IYEYI+FRGSD
Sbjct: 14 ISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYIIFRGSD 73
Query: 85 IK 86
IK
Sbjct: 74 IK 75
Score = 58 (25.5 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 117 DIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLP 157
DI+D+ V P Q T + DPAI+QS A+ AS P
Sbjct: 73 DIKDITVCEPPKAQHT--LPQDPAIVQSSLGSAS-ASPFQP 110
Score = 39 (18.8 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 18/102 (17%), Positives = 39/102 (38%)
Query: 252 PAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPD 311
P +LP + + +S + P P + ++P P +S+++S
Sbjct: 83 PKAQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFRGMAPYGPLAASSLLSQQY------ 136
Query: 312 KASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPG 353
A++ L PS + P + + + ++ K +PG
Sbjct: 137 -AASLGLGAGFPSIPVGKSPMVEQAVQTGSADNLNAKKLLPG 177
>FB|FBgn0041775 [details] [associations]
symbol:tral "trailer hitch" species:7227 "Drosophila
melanogaster" [GO:0003674 "molecular_function" evidence=ND]
[GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0030036 "actin cytoskeleton organization" evidence=IMP]
[GO:0000226 "microtubule cytoskeleton organization" evidence=IMP]
[GO:0045169 "fusome" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
GO:GO:0005875 GO:GO:0000226 EMBL:AE014296 GO:GO:0030036
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0045169 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 eggNOG:NOG235666
GeneTree:ENSGT00390000004174 EMBL:AY069066 RefSeq:NP_648585.3
UniGene:Dm.7674 PDB:2VXE PDBsum:2VXE SMR:Q9VTZ0 IntAct:Q9VTZ0
MINT:MINT-902684 STRING:Q9VTZ0 EnsemblMetazoa:FBtr0075959
EnsemblMetazoa:FBtr0332635 GeneID:39430 KEGG:dme:Dmel_CG10686
UCSC:CG10686-RA CTD:39430 FlyBase:FBgn0041775 InParanoid:Q9VTZ0
OMA:DPAIMQM OrthoDB:EOG4DV433 EvolutionaryTrace:Q9VTZ0
GenomeRNAi:39430 NextBio:813595 Uniprot:Q9VTZ0
Length = 652
Score = 137 (53.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK++IRYEG L+ ++ +E +I L + R + Q+ P +IY+YILFRGSD
Sbjct: 12 ISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSD 71
Query: 85 IK 86
IK
Sbjct: 72 IK 73
Score = 80 (33.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 35/112 (31%), Positives = 47/112 (41%)
Query: 117 DIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLS 176
DI+D++V ++ T HNDPAI+Q+ L +G +P S G+S
Sbjct: 71 DIKDIRVVNNH----TLPHHNDPAIMQAQ----------LQNGPPQMPQHFPMPS--GMS 114
Query: 177 RPPFQGNPPLYQP-----GGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPN 223
PP Q P QP GG G G + P G G + G G PN
Sbjct: 115 GPPQQQQVPSQQPPQMPSGGGSGGAGGAGAPGGGGPGYGNGNPF-GNLGGPN 165
Score = 48 (22.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 250 QYPAMNPSLPTGVSNLPASQ-LAEHRPPLMP 279
Q P P +P+G+S P Q + +PP MP
Sbjct: 102 QMPQHFP-MPSGMSGPPQQQQVPSQQPPQMP 131
Score = 38 (18.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 147 SQAAIASTTLPSGTGSLPDPTSQTS 171
S A A+T T LP+ T Q +
Sbjct: 624 SSAPNATTATTKSTSLLPEQTQQVA 648
>UNIPROTKB|Q8ND56 [details] [associations]
symbol:LSM14A "Protein LSM14 homolog A" species:9606 "Homo
sapiens" [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IMP;IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] GO:GO:0043231
GO:GO:0007275 GO:GO:0006417 GO:GO:0000932 GO:GO:0010494
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 eggNOG:NOG235666 HOVERGEN:HBG054326
CTD:26065 HOGENOM:HOG000231251 EMBL:AB069974 EMBL:AB069975
EMBL:AK027369 EMBL:AK027643 EMBL:AL834398 EMBL:AL117499
EMBL:BC016842 IPI:IPI00410590 IPI:IPI00478300 PIR:T17274
RefSeq:NP_001107565.1 RefSeq:NP_056393.2 UniGene:Hs.407368
ProteinModelPortal:Q8ND56 SMR:Q8ND56 IntAct:Q8ND56 STRING:Q8ND56
PhosphoSite:Q8ND56 DMDM:71648673 PaxDb:Q8ND56 PRIDE:Q8ND56
Ensembl:ENST00000433627 Ensembl:ENST00000544216 GeneID:26065
KEGG:hsa:26065 UCSC:uc002nva.4 UCSC:uc002nvb.4
GeneCards:GC19P034663 HGNC:HGNC:24489 HPA:HPA017961 MIM:610677
neXtProt:NX_Q8ND56 PharmGKB:PA134989467 InParanoid:Q8ND56
OMA:QDTRSVK ChiTaRS:LSM14A GenomeRNAi:26065 NextBio:47973
ArrayExpress:Q8ND56 Bgee:Q8ND56 CleanEx:HS_LSM14A
Genevestigator:Q8ND56 GermOnline:ENSG00000105216 Uniprot:Q8ND56
Length = 463
Score = 167 (63.8 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 51/156 (32%), Positives = 80/156 (51%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD 71
Query: 85 IKHCLLTITGDAISGPRLSQTRDWTL-RSVIRKDIQDLQVKSS-PPV--QTTTSIHNDPA 140
IK LT+ P+ S +D + +S + Q S P T S + +
Sbjct: 72 IKD--LTVCEPP--KPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTYSQFSPSS 127
Query: 141 IIQSHYSQAAIASTTLPS-GTGSLPDPT-SQTSQLG 174
++ + +A ++L S GT + T Q+S +G
Sbjct: 128 LVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVG 163
>UNIPROTKB|Q5R4R4 [details] [associations]
symbol:LSM14A "Protein LSM14 homolog A" species:9601 "Pongo
abelii" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=ISS] GO:GO:0043231
GO:GO:0007275 GO:GO:0006417 GO:GO:0000932 GO:GO:0010494
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 HOVERGEN:HBG054326 CTD:26065
OrthoDB:EOG4NCMD3 EMBL:CR861180 RefSeq:NP_001126913.1
UniGene:Pab.469 ProteinModelPortal:Q5R4R4 SMR:Q5R4R4 PRIDE:Q5R4R4
GeneID:100173930 KEGG:pon:100173930 InParanoid:Q5R4R4 OMA:RSSPQID
Uniprot:Q5R4R4
Length = 463
Score = 167 (63.8 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 51/156 (32%), Positives = 80/156 (51%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD 71
Query: 85 IKHCLLTITGDAISGPRLSQTRDWTL-RSVIRKDIQDLQVKSS-PPV--QTTTSIHNDPA 140
IK LT+ P+ S +D + +S + Q S P T S + +
Sbjct: 72 IKD--LTVCEPP--KPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTYSQFSPSS 127
Query: 141 IIQSHYSQAAIASTTLPS-GTGSLPDPT-SQTSQLG 174
++ + +A ++L S GT + T Q+S +G
Sbjct: 128 LVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVG 163
>RGD|1305695 [details] [associations]
symbol:Lsm14a "LSM14A, SCD6 homolog A (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=ISO] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=ISO] [GO:0039529 "RIG-I
signaling pathway" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:0060340 "positive regulation
of type I interferon-mediated signaling pathway" evidence=ISO]
RGD:1305695 InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 OMA:QDTRSVK IPI:IPI00951278
Ensembl:ENSRNOT00000028690 UCSC:RGD:1305695 ArrayExpress:D3ZSA1
Uniprot:D3ZSA1
Length = 463
Score = 165 (63.1 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 51/156 (32%), Positives = 80/156 (51%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD 71
Query: 85 IKHCLLTITGDAISGPRLSQTRDWTL-RSVIRKDIQDLQ-VKSSPPV--QTTTSIHNDPA 140
IK LT+ P+ S +D + +S + Q V S P S +
Sbjct: 72 IKD--LTVCEPP--KPQCSLPQDPAIVQSSLGSSSSSFQSVGSYGPFGRMPAYSQFSPST 127
Query: 141 IIQSHYSQAAIASTTLPS-GTGSLPDPT-SQTSQLG 174
++ + +A ++L S GT + T SQ++ +G
Sbjct: 128 LVGQQFGAVGVAGSSLTSFGTEASNSGTLSQSNAVG 163
Score = 41 (19.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 252 PAMNPSLPTGVSNLPASQLAEHRPPL----MPPIS 282
P M ++ T ++LPA R P+ +PP S
Sbjct: 193 PTMEQAVQTASAHLPAPAPVGRRSPVPARPLPPTS 227
>MGI|MGI:1914320 [details] [associations]
symbol:Lsm14a "LSM14 homolog A (SCD6, S. cerevisiae)"
species:10090 "Mus musculus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO;IDA] [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=ISO] [GO:0039529 "RIG-I
signaling pathway" evidence=IGI] [GO:0051607 "defense response to
virus" evidence=IMP] [GO:0060340 "positive regulation of type I
interferon-mediated signaling pathway" evidence=IDA]
MGI:MGI:1914320 GO:GO:0043231 GO:GO:0007275 GO:GO:0006417
GO:GO:0003727 GO:GO:0003690 GO:GO:0003725 GO:GO:0000932
GO:GO:0010494 GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182
InterPro:IPR025762 InterPro:IPR019050 InterPro:IPR025761
InterPro:IPR025609 InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701
PROSITE:PS51512 PROSITE:PS51513 PROSITE:PS51536 eggNOG:NOG235666
GO:GO:0039529 GO:GO:0060340 HOVERGEN:HBG054326 CTD:26065
HOGENOM:HOG000231251 OrthoDB:EOG4NCMD3 OMA:QDTRSVK EMBL:BC031521
EMBL:AK003611 IPI:IPI00172202 RefSeq:NP_080224.1 UniGene:Mm.276503
ProteinModelPortal:Q8K2F8 SMR:Q8K2F8 IntAct:Q8K2F8 STRING:Q8K2F8
PhosphoSite:Q8K2F8 PaxDb:Q8K2F8 PRIDE:Q8K2F8 DNASU:67070
Ensembl:ENSMUST00000085585 GeneID:67070 KEGG:mmu:67070
GeneTree:ENSGT00390000004174 InParanoid:Q8K2F8 NextBio:323480
Bgee:Q8K2F8 CleanEx:MM_LSM14A Genevestigator:Q8K2F8
GermOnline:ENSMUSG00000066568 Uniprot:Q8K2F8
Length = 462
Score = 164 (62.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 51/156 (32%), Positives = 79/156 (50%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD 71
Query: 85 IKHCLLTITGDAISGPRLSQTRDWTL-RSVIRKDIQDLQ-VKSSPPV--QTTTSIHNDPA 140
IK LT+ P+ S +D + +S + Q V S P S +
Sbjct: 72 IKD--LTVCEPP--KPQCSLPQDPAIVQSSLGSSSSSFQSVGSYGPFGRMPAYSQFSPST 127
Query: 141 IIQSHYSQAAIASTTLPS-GTGSLPDPT-SQTSQLG 174
++ + +A +L S GT + T SQ++ +G
Sbjct: 128 LVGQQFGAVGVAGNSLTSFGTEASNSGTLSQSNAVG 163
Score = 41 (19.5 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 252 PAMNPSLPTGVSNLPASQLAEHRPPL----MPPIS 282
P M ++ T ++LPA R P+ +PP S
Sbjct: 193 PTMEQAVQTASAHLPAPAPVGRRSPVPARPLPPTS 227
>UNIPROTKB|Q6NVR8 [details] [associations]
symbol:lsm14a "Protein LSM14 homolog A" species:8364
"Xenopus (Silurana) tropicalis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] GO:GO:0007275
GO:GO:0005737 GO:GO:0017148 GO:GO:0003723 GO:GO:0030529
GO:GO:0017151 InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 eggNOG:NOG235666 HOVERGEN:HBG054326
CTD:26065 HOGENOM:HOG000231251 OrthoDB:EOG4NCMD3 EMBL:BC067936
RefSeq:NP_998832.1 UniGene:Str.65390 ProteinModelPortal:Q6NVR8
SMR:Q6NVR8 STRING:Q6NVR8 PRIDE:Q6NVR8 GeneID:407942 KEGG:xtr:407942
Xenbase:XB-GENE-5955547 InParanoid:Q6NVR8 Bgee:Q6NVR8
Uniprot:Q6NVR8
Length = 469
Score = 160 (61.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD 71
Query: 85 IK 86
IK
Sbjct: 72 IK 73
>ZFIN|ZDB-GENE-040426-1567 [details] [associations]
symbol:lsm14aa "LSM14 homolog Aa (SCD6, S.
cerevisiae)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-040426-1567 InterPro:IPR010920 SUPFAM:SSF50182
InterPro:IPR025762 InterPro:IPR019050 InterPro:IPR025761
InterPro:IPR025609 InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701
PROSITE:PS51512 PROSITE:PS51513 PROSITE:PS51536 eggNOG:NOG235666
HOVERGEN:HBG054326 HOGENOM:HOG000231251 OrthoDB:EOG4NCMD3
OMA:QDTRSVK GeneTree:ENSGT00390000004174 EMBL:CU181895
EMBL:BC065337 IPI:IPI00509122 RefSeq:NP_956719.2 UniGene:Dr.91268
PDB:2FB7 PDBsum:2FB7 SMR:Q6P111 DNASU:393397
Ensembl:ENSDART00000023453 Ensembl:ENSDART00000125821 GeneID:393397
KEGG:dre:393397 CTD:393397 InParanoid:Q6P111
EvolutionaryTrace:Q6P111 NextBio:20814442 Uniprot:Q6P111
Length = 443
Score = 148 (57.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + + P D+ +EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSD 71
Query: 85 IK 86
IK
Sbjct: 72 IK 73
Score = 53 (23.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 27/95 (28%), Positives = 41/95 (43%)
Query: 266 PASQLAEHRP-PLMPP----ISTGT-LNLL-SPMLPAQSSAMISDSSTNLIPDKASTQTL 318
P + + P PL+ P + G+ L L S A SSA ISD+ I + +++ L
Sbjct: 121 PVAPYTQFNPSPLVSPQFGTVGVGSALGLFGSETGSAISSAFISDNLCGFIAEGSTSPAL 180
Query: 319 PTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPG 353
+ S PP+ S + V VS + PG
Sbjct: 181 DSLRKS------PPVESAVPSAPV--VSSTLAAPG 207
>ZFIN|ZDB-GENE-040426-779 [details] [associations]
symbol:lsm14b "LSM14B, SCD6 homolog B (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0005737 "cytoplasm" evidence=IDA]
ZFIN:ZDB-GENE-040426-779 GO:GO:0005737 InterPro:IPR010920
SUPFAM:SSF50182 InterPro:IPR025762 InterPro:IPR019050
InterPro:IPR025761 InterPro:IPR025609 InterPro:IPR025768
Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512 PROSITE:PS51513
PROSITE:PS51536 HOVERGEN:HBG054326 HOGENOM:HOG000231251
EMBL:BC045423 IPI:IPI00500251 UniGene:Dr.9174
ProteinModelPortal:Q7ZVT0 SMR:Q7ZVT0 STRING:Q7ZVT0
ArrayExpress:Q7ZVT0 Uniprot:Q7ZVT0
Length = 382
Score = 148 (57.2 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGS 83
ISL SK++IRYEG+L+ I+T+ S++ L R +G P VP D+I+EYI+FRGS
Sbjct: 12 ISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEGRPTDRP-VPARDEIFEYIIFRGS 70
Query: 84 DIK 86
DIK
Sbjct: 71 DIK 73
Score = 49 (22.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 117 DIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAI 151
DI+D+ V P++ + DPAI+QS +++
Sbjct: 71 DIKDITV--CEPLKVHHGLPQDPAIVQSSVGTSSV 103
>UNIPROTKB|Q8AVJ2 [details] [associations]
symbol:lsm14a-b "Protein LSM14 homolog A-B" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0017148 "negative
regulation of translation" evidence=ISS] [GO:0017151 "DEAD/H-box
RNA helicase binding" evidence=ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] GO:GO:0007275 GO:GO:0005737 GO:GO:0017148
GO:GO:0003723 GO:GO:0030529 GO:GO:0017151 InterPro:IPR010920
SUPFAM:SSF50182 InterPro:IPR025762 InterPro:IPR019050
InterPro:IPR025761 InterPro:IPR025609 InterPro:IPR025768
Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512 PROSITE:PS51513
PROSITE:PS51536 HOVERGEN:HBG054326 EMBL:BC042251
RefSeq:NP_001079434.1 UniGene:Xl.20790 ProteinModelPortal:Q8AVJ2
SMR:Q8AVJ2 IntAct:Q8AVJ2 PRIDE:Q8AVJ2 GeneID:379121 KEGG:xla:379121
CTD:379121 Xenbase:XB-GENE-6251640 Uniprot:Q8AVJ2
Length = 471
Score = 160 (61.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD 71
Query: 85 IK 86
IK
Sbjct: 72 IK 73
Score = 39 (18.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 290 SPMLPAQSSAMISDSSTNLIPDKASTQTLPTAA 322
SP++ Q A+ S T+ + S+ +LP ++
Sbjct: 127 SPLVGQQFGAVAGSSLTSFGAETTSSTSLPPSS 159
>UNIPROTKB|Q9YH12 [details] [associations]
symbol:lsm14 "Protein LSM14 homolog" species:8319
"Pleurodeles waltl" [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006417 "regulation of translation" evidence=IC] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] GO:GO:0005737 GO:GO:0006417 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 HOVERGEN:HBG054326 EMBL:X99836
ProteinModelPortal:Q9YH12 SMR:Q9YH12 PRIDE:Q9YH12 Uniprot:Q9YH12
Length = 467
Score = 157 (60.3 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK+EIRYEG+L+ I+TE S++ L L + +PP D+++EYI+FRGSD
Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVVLAKFALLGTEDRPTDRPIPPRDEVFEYIIFRGSD 71
Query: 85 IK 86
IK
Sbjct: 72 IK 73
>UNIPROTKB|Q498K9 [details] [associations]
symbol:lsm14b-b "Protein LSM14 homolog B-B" species:8355
"Xenopus laevis" [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] GO:GO:0007275 GO:GO:0006417 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 HOVERGEN:HBG054326 EMBL:BC100174
RefSeq:NP_001089649.1 UniGene:Xl.18346 ProteinModelPortal:Q498K9
SMR:Q498K9 GeneID:734709 KEGG:xla:734709 CTD:149986
Xenbase:XB-GENE-5893369 Uniprot:Q498K9
Length = 380
Score = 155 (59.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+FRGSD
Sbjct: 12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYIIFRGSD 71
Query: 85 IKHCLLTITGDAISGPRLSQ 104
IK +T+ + LSQ
Sbjct: 72 IKD--ITVCEPPKASHALSQ 89
>POMBASE|SPBC800.09 [details] [associations]
symbol:sum2 "G2/M transition checkpoint protein Sum2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007095 "mitotic G2 DNA
damage checkpoint" evidence=IGI] [GO:0010389 "regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0071276
"cellular response to cadmium ion" evidence=IMP] [GO:0071585
"detoxification of cadmium ion" evidence=IMP] PomBase:SPBC800.09
GO:GO:0005737 GO:GO:0007095 EMBL:CU329671 GO:GO:0071276
GO:GO:0071585 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025762
InterPro:IPR019050 InterPro:IPR025761 InterPro:IPR025609
InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512
PROSITE:PS51513 PROSITE:PS51536 eggNOG:NOG235666 OrthoDB:EOG4FV09F
EMBL:D89169 PIR:T42532 RefSeq:NP_595110.1 ProteinModelPortal:Q9HGL3
SMR:Q9HGL3 IntAct:Q9HGL3 STRING:Q9HGL3 EnsemblFungi:SPBC800.09.1
GeneID:2540829 KEGG:spo:SPBC800.09 OMA:NISCESK NextBio:20801946
Uniprot:Q9HGL3
Length = 426
Score = 154 (59.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 55/197 (27%), Positives = 86/197 (43%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGP--QVPPSDKIYEYILFRG 82
ISL SKS+IRY G+L +IN+++S++ L++ R K P ++PPSD +++YI+FRG
Sbjct: 9 ISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDYIVFRG 68
Query: 83 SDIKHCLLTITGDAISGPRLSQTRDWTL--RSVIRKDIQDLQVKSSP-PVQTT---TSIH 136
SD+K + S P + D + + + + Q P PVQ
Sbjct: 69 SDVKDLRIEEPATTPSAPPVQPPNDPAIIGSNSGQYNWNQAQTAQPPQPVQPNPYGAPYQ 128
Query: 137 NDPAIIQSHYSQAAIASTTLPSGTGSLPDPT-SQTSQLGLSRPPFQ---GNPPLYQPGGS 192
P +Y + +P G L P + T + P Q G P + S
Sbjct: 129 QAPPAGAPYYMYPNAPAQFVPPGGLPLGTPLDASTPAVPYYGAPDQQQMGQRPEFAQNVS 188
Query: 193 LGAWGSSPMPTTNGAGL 209
G G +P G G+
Sbjct: 189 QGFAGQAPYNVRPGYGM 205
>TAIR|locus:2140376 [details] [associations]
symbol:AT4G19360 "AT4G19360" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161550
InterPro:IPR010920 SUPFAM:SSF50182 InterPro:IPR025609 Pfam:PF12701
EMBL:AL022580 IPI:IPI00540399 PIR:T05819 RefSeq:NP_193671.1
UniGene:At.32821 ProteinModelPortal:O65707 SMR:O65707
EnsemblPlants:AT4G19360.1 GeneID:827677 KEGG:ath:AT4G19360
TAIR:At4g19360 eggNOG:NOG282749 HOGENOM:HOG000115016 OMA:TESNAFS
PhylomeDB:O65707 ProtClustDB:CLSN2685505 Genevestigator:O65707
Uniprot:O65707
Length = 268
Score = 134 (52.2 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLE-QKGEEKIGPQVPPSDKIYEYILFRGS 83
++L + +IRYEG+L +N +ES++GL+N +G + G Q+PP KI YILF G+
Sbjct: 32 VTLIANFDIRYEGILCFLNLQESTLGLQNVVCYGTEGRNQNGVQIPPDTKIQNYILFNGN 91
Query: 84 DIKHCLL 90
+IK ++
Sbjct: 92 NIKEIIV 98
Score = 46 (21.3 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 253 AMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTN 307
A NP LP VS P ++ + P IS NL+ P +S+A + S N
Sbjct: 117 APNPPLPIIVS--PNNRSDDKILQQFPLISNE--NLIQPQAKTESNAFSVNGSVN 167
>CGD|CAL0000511 [details] [associations]
symbol:orf19.6250 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=IEA] [GO:0045947 "negative regulation of translational
initiation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] CGD:CAL0000511 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AACQ01000038 EMBL:AACQ01000037
InterPro:IPR025762 InterPro:IPR019050 InterPro:IPR025761
InterPro:IPR025609 InterPro:IPR025768 Pfam:PF09532 Pfam:PF12701
PROSITE:PS51512 PROSITE:PS51513 PROSITE:PS51536 eggNOG:NOG235666
RefSeq:XP_718753.1 RefSeq:XP_718839.1 ProteinModelPortal:Q5AAR2
STRING:Q5AAR2 GeneID:3639513 GeneID:3639594 KEGG:cal:CaO19.13628
KEGG:cal:CaO19.6250 Uniprot:Q5AAR2
Length = 347
Score = 135 (52.6 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 44/158 (27%), Positives = 71/158 (44%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRL-EQKGE-EKIG-P--QVPPSDKIYEYIL 79
ISL S +RY G+L NIN +++++ L++ RL +G +G P +VPP +Y+Y++
Sbjct: 9 ISLISNKGLRYVGLLENINADDATVALKSVRLFGTEGRMAAMGQPNLEVPPGVDVYDYVV 68
Query: 80 FRGSDIKHCLLTITG-DAISG-----PRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTT 133
FRGSD+K + T D + P+ Q + T +P QT
Sbjct: 69 FRGSDVKDLSVLDTPIDEVKPNIYRPPQQQQQQGATTGQYYSGPTSTSSQNGTPQTQTQA 128
Query: 134 SIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTS 171
Y Q + ++ T S ++P QTS
Sbjct: 129 PATTSTTTASQSYGQTSSSAPTQASPAQAVPAQPVQTS 166
>WB|WBGene00012484 [details] [associations]
symbol:car-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0040017
"positive regulation of locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008219 "cell death" evidence=IMP]
[GO:0048599 "oocyte development" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0005819 "spindle"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] [GO:0051233 "spindle midzone" evidence=IDA]
[GO:0000242 "pericentriolar material" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0044444 "cytoplasmic
part" evidence=IDA] GO:GO:0009792 GO:GO:0007052 GO:GO:0008219
GO:GO:0051233 GO:GO:0040017 GO:GO:0000910 GO:GO:0000932
GO:GO:0000242 GO:GO:0048599 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0043186 EMBL:AL034393 InterPro:IPR025762 InterPro:IPR019050
InterPro:IPR025761 InterPro:IPR025609 InterPro:IPR025768
Pfam:PF09532 Pfam:PF12701 PROSITE:PS51512 PROSITE:PS51513
PROSITE:PS51536 eggNOG:NOG235666 HOGENOM:HOG000231251
GeneTree:ENSGT00390000004174 PIR:T26526 RefSeq:NP_493254.1
ProteinModelPortal:Q9XW17 SMR:Q9XW17 DIP:DIP-26312N IntAct:Q9XW17
MINT:MINT-1086587 STRING:Q9XW17 PaxDb:Q9XW17 DNASU:173158
EnsemblMetazoa:Y18D10A.17.1 EnsemblMetazoa:Y18D10A.17.2
GeneID:173158 KEGG:cel:CELE_Y18D10A.17 UCSC:Y18D10A.17 CTD:173158
WormBase:Y18D10A.17 InParanoid:Q9XW17 OMA:FAKCREE NextBio:878513
Uniprot:Q9XW17
Length = 340
Score = 132 (51.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPP---SDKIYEYILFR 81
ISL SK +IRYEG+L+ ++T +S+I L ++ G EK P P D +YEYI+F+
Sbjct: 12 ISLISKLDIRYEGILYTVDTNDSTIALA--KVRSFGTEK-RPTANPVAARDDVYEYIIFK 68
Query: 82 GSDIKHCLLTIT 93
SDIK ++ T
Sbjct: 69 ASDIKDLIVCDT 80
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.131 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 493 404 0.00099 117 3 11 23 0.47 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 608 (65 KB)
Total size of DFA: 232 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.46u 0.12s 41.58t Elapsed: 00:00:01
Total cpu time: 41.46u 0.12s 41.58t Elapsed: 00:00:02
Start: Mon May 20 21:22:02 2013 End: Mon May 20 21:22:04 2013