BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011128
(493 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C658|DCP5_ARATH Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1
Length = 611
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 218/491 (44%), Positives = 262/491 (53%), Gaps = 84/491 (17%)
Query: 1 MAAAATEAPRSSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQK 59
MAA T S SS +ADSY+GSLISLTSKSEIRYEG+L+NINT+ESSIGL+N R +
Sbjct: 1 MAADNT---GSKSSSAADSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTE 57
Query: 60 GEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQ 119
G +K GPQVPPSDK+YEYILFRG+DIK
Sbjct: 58 GRKKDGPQVPPSDKVYEYILFRGTDIK--------------------------------- 84
Query: 120 DLQVKSSPPVQ-TTTSIHNDPAIIQSHYSQAAIASTTLPS-GTGSLPDPTSQTSQLGLSR 177
DLQVK+SPPVQ ++I+NDPAIIQSHY S +LPS +GSLPD +S Q G
Sbjct: 85 DLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLPSTASGSLPDISSHNGQPGQHG 144
Query: 178 PPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYG-SPNGL-QGQQQPLLQP 235
FQ PLYQPGG+LG+WG+SP P PMYWQGFY PNGL Q QQ L++P
Sbjct: 145 MGFQNAMPLYQPGGNLGSWGASPQP---------PMYWQGFYTPPPNGLPQLHQQSLIRP 195
Query: 236 PPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLP- 294
P GL M S+QQ +QYP N P S+ P + P ST + L LP
Sbjct: 196 PHGLPMPNSLQQPLQYPNFNTPPPPTGSSSLQGSSLPEAPSSLFPFSTSSQMLAPSSLPF 255
Query: 295 ------------------AQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSG 336
A S ++ S+ + L+ +KA PT T+L L+
Sbjct: 256 PGLPPVTLSSSLQSTLQSAPSPSLASEMAPPLLSNKAPITAPPTLPQDTNL-----LSFS 310
Query: 337 IDKTAVAPVS-------EPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQ 389
+ T S +P V GPI P Q+T S G+SSSI D P LVTPGQ
Sbjct: 311 LSTTRATEASTGLPLSNKPSVVTGPISPPQTTPLTSAPVAGVSSSISQDKPKPLLVTPGQ 370
Query: 390 LLQPGLPAVSSSQSSQAAQKDVEVVQLSSSES-AAAPPPASDVQEPILPLPSTTE--RKP 446
LLQ G AVS S S A KDVEVVQ+SSS + P S+ Q PILPLPS+ +KP
Sbjct: 371 LLQSGSSAVSLSPPSTNADKDVEVVQVSSSAGLEQSVPVTSEAQPPILPLPSSARPTQKP 430
Query: 447 YGAPTSTQYGY 457
G GY
Sbjct: 431 NGHSFPNHNGY 441
>sp|Q9FH77|DCP5L_ARATH Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2
SV=1
Length = 571
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 34/147 (23%)
Query: 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIY 75
D++IGS ISL SK EIRYEG+L+++N ++S++GL+N R +G +K GPQ+PP DK+Y
Sbjct: 30 GDTFIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVY 89
Query: 76 EYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSI 135
+YILFRGSDIK DLQV SP Q+ I
Sbjct: 90 DYILFRGSDIK---------------------------------DLQVNPSPSAQSRQEI 116
Query: 136 HNDPAIIQSHYSQAAIASTTLPSGTGS 162
++ + QS +S+ A+ ++ SG S
Sbjct: 117 QSEQDVNQSPHSRPAMTMSSPISGYDS 143
>sp|Q9HGL3|SUM2_SCHPO Protein sum2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sum2 PE=2 SV=1
Length = 426
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 154/360 (42%), Gaps = 88/360 (24%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGP--QVPPSDKIYEY 77
+IGS ISL SKS+IRY G+L +IN+++S++ L++ R K P ++PPSD +++Y
Sbjct: 4 FIGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDY 63
Query: 78 ILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHN 137
I+FRGSD+K + + S+PPVQ N
Sbjct: 64 IVFRGSDVKDLRIE---------------------------EPATTPSAPPVQPP----N 92
Query: 138 DPAII-----QSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGS 192
DPAII Q +++QA A P P Q G + P + P G
Sbjct: 93 DPAIIGSNSGQYNWNQAQTAQPPQPVQPNPYGAPYQQAPPAGAPYYMYPNAPAQFVPPGG 152
Query: 193 LGAWGSSPMPT-TNGAGLAMPMYWQGFYGSPNGLQGQQQPLL----------QPP----P 237
L P+ T + + A+P +YG+P+ Q Q+P Q P P
Sbjct: 153 L------PLGTPLDASTPAVP-----YYGAPDQQQMGQRPEFAQNVSQGFAGQAPYNVRP 201
Query: 238 GLSMLPSMQQSMQY-PAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPA- 295
G M PS Q+ + P M PT VS P+ Q MPP + G + P + A
Sbjct: 202 GYGM-PSNQKPPNFAPGMPAPGPTAVSASPSLQ-------SMPP-TNGVIPGAQPSIEAS 252
Query: 296 --------QSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSE 347
++S + +D N D + +QT+ T+ PS +P P D +A P +E
Sbjct: 253 IEKESTSIRNSTVTNDRVVNTTVDVSQSQTVETSGPSKEVPTTQP-----DASAAKPRTE 307
>sp|Q8ND56|LS14A_HUMAN Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3
Length = 463
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIK 86
FRGSDIK
Sbjct: 67 FRGSDIK 73
>sp|Q5R4R4|LS14A_PONAB Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1
Length = 463
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIK 86
FRGSDIK
Sbjct: 67 FRGSDIK 73
>sp|A0A8M2|L14AA_XENLA Protein LSM14 homolog A-A OS=Xenopus laevis GN=lsm14a-a PE=1 SV=1
Length = 471
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+I+EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEIFEYII 66
Query: 80 FRGSDIK 86
FRGSDIK
Sbjct: 67 FRGSDIK 73
>sp|Q8K2F8|LS14A_MOUSE Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a PE=1 SV=1
Length = 462
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDLTV 77
>sp|Q8AVJ2|L14AB_XENLA Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm14a-b PE=2 SV=1
Length = 471
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIK 86
FRGSDIK
Sbjct: 67 FRGSDIK 73
>sp|Q3MHF8|LS14A_BOVIN Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE=2 SV=1
Length = 463
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIK 86
FRGSDIK
Sbjct: 67 FRGSDIK 73
>sp|Q6NVR8|LS14A_XENTR Protein LSM14 homolog A OS=Xenopus tropicalis GN=lsm14a PE=2 SV=1
Length = 469
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIK 86
FRGSDIK
Sbjct: 67 FRGSDIK 73
>sp|Q68FI1|L14BA_XENLA Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm14b-a PE=1 SV=1
Length = 422
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDITV 77
>sp|Q566L7|LS14B_XENTR Protein LSM14 homolog B OS=Xenopus tropicalis GN=lsm14b PE=2 SV=1
Length = 382
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDITV 77
>sp|Q9YH12|LSM14_PLEWA Protein LSM14 homolog OS=Pleurodeles waltl GN=lsm14 PE=1 SV=1
Length = 467
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L L + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVVLAKFALLGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIK 86
FRGSDIK
Sbjct: 67 FRGSDIK 73
>sp|Q498K9|L14BB_XENLA Protein LSM14 homolog B-B OS=Xenopus laevis GN=lsm14b-b PE=1 SV=1
Length = 380
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDITV 77
>sp|Q8CGC4|LS14B_MOUSE Protein LSM14 homolog B OS=Mus musculus GN=Lsm14b PE=2 SV=3
Length = 385
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
Y+GS ISL SK++IRYEG+L+ I+T+ S++ L R + PP ++IYEYI+
Sbjct: 9 YLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYII 68
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 69 FRGSDIKDITV 79
>sp|Q9BX40|LS14B_HUMAN Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B PE=1 SV=1
Length = 385
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
Y+GS ISL SK++IRYEG+L+ I+T+ S++ L R + PP ++IYEYI+
Sbjct: 9 YLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYII 68
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 69 FRGSDIKDITV 79
>sp|P45978|SCD6_YEAST Protein SCD6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCD6 PE=1 SV=1
Length = 349
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGP-QVPPSDKIYEY 77
YIG ISL S ++ RY G+L +I++E+ ++ L+ R +G + GP ++ P+ +Y
Sbjct: 4 YIGKTISLISVTDNRYVGLLEDIDSEKGTVTLKEVRCFGTEGRKNWGPEEIYPNPTVYNS 63
Query: 78 ILFRGSDIK 86
+ F GS++K
Sbjct: 64 VKFNGSEVK 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,273,252
Number of Sequences: 539616
Number of extensions: 8984064
Number of successful extensions: 31107
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1144
Number of HSP's that attempted gapping in prelim test: 27814
Number of HSP's gapped (non-prelim): 3687
length of query: 493
length of database: 191,569,459
effective HSP length: 122
effective length of query: 371
effective length of database: 125,736,307
effective search space: 46648169897
effective search space used: 46648169897
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)