BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011129
(493 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 225 YLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 284
YL I + I + FL EI N+E + +GAK N LI GEWWRL+TP+ LH G
Sbjct: 181 YLFIALQI-LMFFLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIG 234
Query: 285 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAI 344
+ H+A + AL + G V + YG F LIY GI+G++ SF+ +P P+ G +G +F
Sbjct: 235 IAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGC 294
Query: 345 IGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLG 394
+GA L N+ + + + + I++ F +SN +D H+G
Sbjct: 295 LGALLYVALSNRKMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG 341
>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
GN=ydcA PE=3 SV=1
Length = 199
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 13/145 (8%)
Query: 270 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 329
GEWWRL+TP+ LH+G H+ + ++ F P + + G F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115
Query: 330 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 387
P VG +G +F + G +L +LI ++ S+ + + +SFI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN---I 172
Query: 388 DTWAHLGAAFTDLGGNTSTWFLLTF 412
+ AHL F GG FLL+F
Sbjct: 173 NMMAHL---FGLCGG-----FLLSF 189
>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1
Length = 281
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 30/207 (14%)
Query: 229 LVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 286
LV +++AV+ ++I ASP+ + E S +L+GA I +L L G+WWR M LHS
Sbjct: 27 LVLLNIAVYFYQIVFASPLDSRE----SNLILFGANIYQLSLTGDWWRYPISMMLHSNGT 82
Query: 287 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPT----------- 334
H+A +C AL G ++YG F IY + GI L +++ E +
Sbjct: 83 HLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDSTVY 142
Query: 335 ----VGGTGPVFAIIGAWLIYQFQ------NKDLIAKDVSERMFQKAILSTALSFIISNF 384
VG +G + I A +IY + N + + + I AL+ I
Sbjct: 143 ITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLINGLQ 202
Query: 385 GPVDTWAHLGAAFTDLGGNTSTWFLLT 411
VD AH+G A +G S ++L
Sbjct: 203 SGVDNAAHIGGAI--IGALISIAYILV 227
>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1
Length = 283
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 226 LIILVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLH 282
+II+ + +AV++ +A+ + +E P +++GA I ELI VGE WRL+ P+FLH
Sbjct: 62 IIIISFVQIAVYIASLAAGLAPNEI-LAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH 120
Query: 283 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHTPEPTVGGTGP 340
LFH+ ++ W + G + + YG +Y G+ N+ S L + G +
Sbjct: 121 LNLFHILMNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTA 180
Query: 341 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF---IISNFGP-VDTWAHLGA 395
VFA+IG Q LI + +R AI+S + +S+FG +D+ H+G
Sbjct: 181 VFALIGV----QLAELALIWHAIQDR--NSAIISVCICLFFVFVSSFGSHMDSVGHIGG 233
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1
Length = 263
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 273 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 332
WR+VTP+FLH+ + H+ L+ +L ++ + YG F + Y L I GNL S L P
Sbjct: 84 WRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNLLSMLMQPW 143
Query: 333 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSE---RMFQKAILSTALSFIISNFG-PV 387
+VG + F IIG ++ +SE R++ I A+ +FG V
Sbjct: 144 ALSVGASTAGFGIIGG----MAAEVSVVWCKLSEELKRIYSMDICILAVLIYFLSFGRTV 199
Query: 388 DTWAHLGA 395
DT+ HLG
Sbjct: 200 DTFGHLGG 207
>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1
Length = 641
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 258 LYGAKINELILVGEWWRLVTPMFLHSGLFH--VALSCWALLTFGPQVCKSYGPFTFFLIY 315
L G + N + E +RL T M++H G H + LSC + + + +G L++
Sbjct: 328 LGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILW--IIEPDWGFLRTTLLF 385
Query: 316 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 374
LGGISGNL S + P TVG +G ++A++GA + Y + I + +F ++
Sbjct: 386 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVI- 444
Query: 375 TALSFIISNFGPVDTWAHLGAAFTDLGG 402
+ + G D +AH+G A LGG
Sbjct: 445 --IGILTGMAGFTDNYAHMGGA---LGG 467
>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN10929 PE=3 SV=1
Length = 503
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 251 GFFSLPLLY-GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPF 309
GF +P + G +++ +W+R + PMFLHSG H+ + +T G + + G +
Sbjct: 229 GFDGVPNPHPGGSLDDKPAPDQWFRFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWW 288
Query: 310 TFFLIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVS 364
+ L+Y GI G + ++ E + G +G +F I+ + L+Y + ++
Sbjct: 289 RYGLVYLSSGIWGFVLGGNYAGQGEASCGCSGALFGILALFVLDLLYGWNDRQ---NPWV 345
Query: 365 ERMFQKAILSTALSFIISNFGPVDTWAHLGA 395
E + +L A+SF++ +D ++HLG
Sbjct: 346 ELIIM--VLGIAVSFVLGLLPGLDNFSHLGG 374
>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
Length = 857
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +IY L GI+GNL S +
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
P VG G F I+ + Q+ ++A+ R F K + F +D
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQ--PWRAFTKLLCVVLFLFAFGLLPWIDN 771
Query: 390 WAHLGAAFTDLGGNTSTWFLLTFAL 414
+AH+ + F L+FA
Sbjct: 772 FAHISGFISG--------FFLSFAF 788
>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2
Length = 856
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +IY L GI+GNL S +
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFL 712
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFAFGLLPWIDN 770
Query: 390 WAHLGAAFTDL 400
+AH+ + L
Sbjct: 771 FAHISGFVSGL 781
>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFTFGLLPWIDN 769
Query: 390 WAHLGAAFTDL 400
+AH+ + L
Sbjct: 770 FAHISGFISGL 780
>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPW--RAFFKLLAVVLFLFTFGLLPWIDN 769
Query: 390 WAHLGAAFTDL 400
+AH+ + L
Sbjct: 770 FAHISGFISGL 780
>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2
Length = 855
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFTFGLLPWIDN 769
Query: 390 WAHLGAAFTDL 400
+AH+ + L
Sbjct: 770 FAHISGFISGL 780
>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1
Length = 855
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFTFGLLPWIDN 769
Query: 390 WAHLGAAFTDL 400
+AH+ + L
Sbjct: 770 FAHISGFISGL 780
>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1
Length = 856
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 653 QFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFTFGLLPWIDN 770
Query: 390 WAHLGAAFTDL 400
+AH+ + L
Sbjct: 771 FAHISGFISGL 781
>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2
SV=1
Length = 856
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFAFGLLPWIDN 770
Query: 390 WAHLGAAFTDL 400
+AH+ + L
Sbjct: 771 FAHISGFVSGL 781
>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2
SV=1
Length = 826
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +IY L GI+GNL S L
Sbjct: 623 QFYRLWLSLFLHAGVIHCCVSVVFQMTVLRDLEKLAGWLRISIIYILSGITGNLASALFL 682
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAK 361
P VG G F ++ + FQ+ ++AK
Sbjct: 683 PYRAEVGPAGSQFGLLACLFVELFQSWQILAK 714
>sp|A2AGA4|RHBL2_MOUSE Rhomboid-related protein 2 OS=Mus musculus GN=Rhbdl2 PE=1 SV=1
Length = 302
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 20/205 (9%)
Query: 211 RDLALQRTEETSNLYLIILVSI-DVAVFLF-EIASPIRN---SEFGFFSLPLLYGAKINE 265
R L+R IIL+S+ ++AVF++ + P + + G PL Y + E
Sbjct: 58 RRTYLERANCLPPPLFIILISLAELAVFIYYAVWKPQKQWITLDTGILESPLTYCPEKRE 117
Query: 266 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 325
E WR ++ M +H+G+ H+ + + G + + L+Y G ++G+L
Sbjct: 118 -----EAWRFISYMLVHAGVQHIVGNLLMQIVLGIPLEMVHKGLRVGLVYLAGVLAGSLA 172
Query: 326 SFLHTP-EPTVGGTGPVFAIIGAWLIYQFQN-KDLI-AKDVSERMFQKAILSTALS---- 378
S + P + VG +G V+A++G + + N +++I A + + I+++ +
Sbjct: 173 SSIFDPLKSLVGASGGVYALMGGYFMNVIVNFREMIPAFGIVRLLVIILIVASDMGFALY 232
Query: 379 ---FIISNFGPVDTWAHLGAAFTDL 400
F+ +N PV AH+ F +
Sbjct: 233 RRFFVPANGSPVSFAAHIAGGFAGM 257
>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1
Length = 404
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 225 YLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKI-NELI----LVGEWWRLVTPM 279
++I + ++VA FL+ S G F L + + + N L+ L + WR +T +
Sbjct: 165 FMITVTLLEVAFFLYNGVS------LGQFVLQVTHPRYLKNSLVYHPQLRAQVWRYLTYI 218
Query: 280 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPTVGGT 338
F+H+G+ H+ L+ L G + +G L+Y G ++G+L S P VG +
Sbjct: 219 FMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMTAPVVGSS 278
Query: 339 GPVFAIIGAWL 349
G V+A++ A L
Sbjct: 279 GGVYALVSAHL 289
>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1
Length = 293
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 28/185 (15%)
Query: 228 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLL--------YGAKINELILVGEWWRLVTPM 279
++++I + ++F I + ++E LPL+ +GA LI G+ WRL+ P+
Sbjct: 62 VVLAISIVDWIFYIVTVCLDTE-----LPLIPAANILVHFGANYPPLIKQGQVWRLLLPV 116
Query: 280 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL---TSFLHTPEPTVG 336
FLH+ FHV + + L G + + YG F +Y I GNL T+F VG
Sbjct: 117 FLHANFFHVFFNVFFQLRMGFTIERRYGLLKFTGLYFASAIYGNLLSATAFFCN-SLKVG 175
Query: 337 GTGPVFAIIG------AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 390
+ F +IG A ++ +++D + + M +L L F + N G +D
Sbjct: 176 ASTAGFGLIGIQICEMALTWHRMRHRDRMLTN----MVSFVLLMVLLMFTL-NGGSIDQM 230
Query: 391 AHLGA 395
HLG
Sbjct: 231 GHLGG 235
>sp|Q6GV23|RHBL5_TOXGO Rhomboid-like protease 5 OS=Toxoplasma gondii GN=ROM5 PE=1 SV=1
Length = 841
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 263 INELILVGEWWRLVTPMFLHSGLFHVAL--SCWA--LLTFGPQVCKSYGPFTFFLIYTLG 318
N++ GE +R+V MFLH G H+ L SC A L P ++G ++ +G
Sbjct: 455 TNKVRNYGEMFRVVWGMFLHGGWMHLLLNVSCQAQTLWILEP----AWGFLRTLSLWIVG 510
Query: 319 GISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIA 360
G+SG+L S + P TVG +G + ++GA + + + D IA
Sbjct: 511 GVSGSLLSAVANPCTVTVGSSGAFYGLLGALVPFSIEYWDHIA 553
>sp|Q76NQ1|RHDF1_DROME Inactive rhomboid protein 1 OS=Drosophila melanogaster GN=rho-5 PE=2
SV=1
Length = 1429
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL-- 328
+ +RL+T + +H+G+ H+A++ F + + G ++Y + G +GNLTS +
Sbjct: 1092 QLYRLLTSLCMHAGILHLAITLIFQHLFLADLERLIGTVRTAIVYIMSGFAGNLTSAILV 1151
Query: 329 -HTPE--PTVGGTGPVFAIIG--AWLIYQFQNKDLIA 360
H PE P+ +G V ++I W+ +++ +K IA
Sbjct: 1152 PHRPEVGPSASLSGVVASLIALLVWMHWKYLHKPHIA 1188
>sp|Q8VC82|RHBL1_MOUSE Rhomboid-related protein 1 OS=Mus musculus GN=Rhbdl1 PE=2 SV=1
Length = 373
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 19/112 (16%)
Query: 257 LLYGAKINELILV------------------GEWWRLVTPMFLHSGLFHVALSCWALLTF 298
L YGA++N+ +L WR +T MF+H GL + + L
Sbjct: 147 LCYGARLNKWVLQTYHPEYMKSPLVYHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMI 206
Query: 299 GPQVCKSYGPFTFFLIYTLGGISGNLT-SFLHTPEPTVGGTGPVFAIIGAWL 349
G + +G L+Y G ++G+LT S P VGG+G V+A+ A L
Sbjct: 207 GVPLEMVHGVLRISLLYLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHL 258
>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2
Length = 355
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 16/133 (12%)
Query: 225 YLIILVSIDVAVFLFE-IASPIRNSEFGFFSLPLLYGAKINELILVG------EWWRLVT 277
+++++ I++A+F ++ P +N F LP+ ++ +LV + WR +
Sbjct: 104 FILVISIIEIAIFAYDRYTMPAQN-----FGLPV---PIPSDSVLVYRPDRRLQVWRFFS 155
Query: 278 PMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPTVG 336
MFLH+ FH+ + L FG + +G +IY G +G+L TS + + VG
Sbjct: 156 YMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAGSLGTSVVDSEVFLVG 215
Query: 337 GTGPVFAIIGAWL 349
+G V+A++ A L
Sbjct: 216 ASGGVYALLAAHL 228
>sp|P44783|GLPG_HAEIN Rhomboid protease GlpG OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=glpG PE=1 SV=1
Length = 192
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG-GISGNLTSFLH 329
E WR ++ +H H+ + FG + +++G ++Y + I+G + +++
Sbjct: 49 EVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS 108
Query: 330 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 385
P G +G V+A++G I N L D+ E F ++ AL FI FG
Sbjct: 109 GP-AFFGLSGVVYAVLGYVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFISPLFG 161
>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1
Length = 404
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 26/138 (18%)
Query: 225 YLIILVSIDVAVFLF----------EIASP--IRNSEFGFFSLPLLYGAKINELILVGEW 272
++I + ++VA+FL+ ++ P ++NS L+Y ++ +
Sbjct: 165 FMITITLLEVALFLYNGVLLDQFVLQVTHPRYLKNS--------LVYHPQLR-----AQA 211
Query: 273 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTP 331
WR VT +F+H+G+ + L+ L G + +G L+Y G ++G+L S
Sbjct: 212 WRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMT 271
Query: 332 EPTVGGTGPVFAIIGAWL 349
P VG +G V+A++ A L
Sbjct: 272 APVVGSSGGVYALVSAHL 289
>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1
Length = 827
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +I+ L GI+GNL S +
Sbjct: 624 QFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFL 683
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAK 361
P VG G F ++ + FQ+ L+ +
Sbjct: 684 PYRAEVGPAGSQFGLLACLFVELFQSWQLLER 715
>sp|O75783|RHBL1_HUMAN Rhomboid-related protein 1 OS=Homo sapiens GN=RHBDL1 PE=2 SV=1
Length = 438
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 19/112 (16%)
Query: 257 LLYGAKINELILV------------------GEWWRLVTPMFLHSGLFHVALSCWALLTF 298
L YGA++N+ +L WR +T MF+H GL + + L
Sbjct: 212 LCYGARLNKWVLQTYHPEYMKSPLVYHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMI 271
Query: 299 GPQVCKSYGPFTFFLIYTLGGISGNLT-SFLHTPEPTVGGTGPVFAIIGAWL 349
G + +G L+Y G ++G+LT S P VGG+G V+A+ A L
Sbjct: 272 GVPLEMVHGLLRISLLYLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHL 323
>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2
Length = 856
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++RL +FLH+G+ H +S +T + K G +I+ L GI+GNL S +
Sbjct: 653 QFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFL 712
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAK 361
P VG G F ++ + FQ+ L+ +
Sbjct: 713 PYRAEVGPAGSQFGLLACLFVELFQSWPLLER 744
>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1
Length = 827
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
+++R+ +FLH+G+ H +S +T + K G +I+ L GI+GNL S +
Sbjct: 624 QFYRIWLSLFLHAGIVHCLVSVVFQMTILRDLEKLAGWHRISIIFILSGITGNLASAIFL 683
Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAK 361
P VG G F ++ + FQ+ L+ +
Sbjct: 684 PYRAEVGPAGSQFGLLACLFVELFQSWQLLER 715
>sp|Q9NX52|RHBL2_HUMAN Rhomboid-related protein 2 OS=Homo sapiens GN=RHBDL2 PE=1 SV=2
Length = 303
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 211 RDLALQRTEETSNLYLIILVSI-DVAVFLF-EIASPIRN---SEFGFFSLPLLYGAKINE 265
R L+R II +S+ ++AVF++ + P + + G P +Y + E
Sbjct: 59 RGTYLERANCFPPPVFIISISLAELAVFIYYAVWKPQKQWITLDTGILESPFIYSPEKRE 118
Query: 266 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 325
E WR ++ M +H+G+ H+ + L G + + L+Y G I+G+L
Sbjct: 119 -----EAWRFISYMLVHAGVQHILGNLCMQLVLGIPLEMVHKGLRVGLVYLAGVIAGSLA 173
Query: 326 SFLHTP-EPTVGGTGPVFAIIGAWLIYQFQN 355
S + P VG +G V+A++G + + N
Sbjct: 174 SSIFDPLRYLVGASGGVYALMGGYFMNVLVN 204
>sp|Q9P7D8|YOFA_SCHPO Uncharacterized rhomboid protein P4H10.10, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP4H10.10 PE=3 SV=1
Length = 392
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 270 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 326
G WW LV +F H L H+ ++C A+ +F V +G + +Y G+ GN +
Sbjct: 167 GRWWTLVVSIFSHQNLAHLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGVFGNYVA 223
>sp|O88779|RHBL1_RAT Rhomboid-related protein 1 (Fragment) OS=Rattus norvegicus
GN=Rhbdl1 PE=2 SV=1
Length = 164
Score = 35.8 bits (81), Expect = 0.80, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 280 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT-SFLHTPEPTVGGT 338
F+H GL + + L G + +G L+Y G ++G+LT S P VGG+
Sbjct: 1 FMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSLTVSITDMRAPVVGGS 60
Query: 339 GPVFAIIGAWL 349
G V+A+ A L
Sbjct: 61 GGVYALCSAHL 71
>sp|Q19821|ROM1_CAEEL Rhomboid-related protein 1 OS=Caenorhabditis elegans GN=rom-1 PE=3
SV=2
Length = 356
Score = 35.8 bits (81), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 268 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF 327
L GE WR + MFLH+GL H+ + L G + ++ + IY L SG+L +
Sbjct: 162 LRGEAWRFTSYMFLHAGLNHLLGNVIIQLLVGIPLEVAHKIWRIGPIYLLAVTSGSLLQY 221
Query: 328 LHTPEP-TVGGTGPVFAIIGA 347
P VG + V+A+I A
Sbjct: 222 AIDPNSLLVGASAGVYALIFA 242
>sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1
Length = 346
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 275 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-- 332
++ F H +H+ ++ AL +FG + G FF +Y I+G+L S L P+
Sbjct: 186 IIGSAFSHQEFWHLGMNMLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFS-LWYPKLA 244
Query: 333 ------PTVGGTGPVFAIIG 346
P++G +G +F ++G
Sbjct: 245 RLAIVGPSLGASGALFGVLG 264
>sp|Q41005|CBPX_PEA Serine carboxypeptidase-like (Fragment) OS=Pisum sativum PE=2 SV=1
Length = 286
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 208 SLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELI 267
++E+ L + ++ + I VS V++ + +RN E G +PLL IN LI
Sbjct: 131 NMEKFLNQESVRDSLGVGKIRFVSCSTEVYMAMLVDWMRNLEVG---IPLLLEDGINLLI 187
Query: 268 LVGEW-----W----RLVTPMFLHSGLFHVALSCWALLTFGPQ--VCKSYGPFTFFLIYT 316
GE+ W R V M VA S + G Q + KSYGP +F ++
Sbjct: 188 YAGEYDLICNWLGNSRWVHAMKWSGQKEFVASSDVPFVVNGSQAGLLKSYGPLSFLKVHD 247
Query: 317 LG 318
G
Sbjct: 248 AG 249
>sp|A6QP29|TBD2A_BOVIN TBC1 domain family member 2A OS=Bos taurus GN=TBC1D2 PE=2 SV=1
Length = 925
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 341 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDL 400
+ AI+ + + +K L+A V +R+ Q +L + AHLG DL
Sbjct: 733 LVAIVETIMPADYYSKTLLASQVDQRVLQDLLLEKLPRLM----------AHLGQRHVDL 782
Query: 401 GGNTSTWFLLTFA 413
T WFL+ FA
Sbjct: 783 SFITFNWFLVVFA 795
>sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial
OS=Pongo abelii GN=PARL PE=2 SV=1
Length = 379
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 275 LVTPMFL----HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
L +PM L H LFH+A + + L +F + G F +Y G+ N S++
Sbjct: 205 LCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVGK 264
Query: 331 PE-----PTVGGTGPVFAIIGA 347
P++G +G + ++ A
Sbjct: 265 VATGRYGPSLGASGAIMTVLAA 286
>sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo
sapiens GN=PARL PE=1 SV=2
Length = 379
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 275 LVTPMFL----HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
L +PM L H LFH+A + + L +F + G F +Y G+ N S++
Sbjct: 205 LCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVGK 264
Query: 331 PE-----PTVGGTGPVFAIIGA 347
P++G +G + ++ A
Sbjct: 265 VATGRYGPSLGASGAIMTVLAA 286
>sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial
OS=Rattus norvegicus GN=Parl PE=2 SV=1
Length = 377
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 275 LVTPMFL----HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
L +PM L H LFH+A + + L +F + G F +Y G+ N S++
Sbjct: 203 LCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQFVAVYLSAGVISNFVSYVCK 262
Query: 331 PE-----PTVGGTGPVFAIIGA 347
P++G +G + ++ A
Sbjct: 263 VATGRYGPSLGASGAIMTVLAA 284
>sp|P34356|ROM2_CAEEL Rhomboid-related protein 2 OS=Caenorhabditis elegans GN=rom-2 PE=3
SV=2
Length = 435
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 191 MGKLKGYRELRNKDGVRSLERDLALQRTEETSNL----------YLIILVSIDVAVFLFE 240
M K KGYR LR +L QR S L +LI L + +A +L+
Sbjct: 81 MSKCKGYR-LREYLFRAALTVTPKNQRIHVFSELQRYKCVPPPIFLIFLSIVQLAFYLYY 139
Query: 241 IASPIRNSEFGFFSLPLLYGAKINELIL----VGEWWRLVTPMFLHSGLFHVALSCWALL 296
+ + +SE + S P+ ++ LI+ + E WRL T ++ G+FH+ + L
Sbjct: 140 V---VDSSEGVWLSGPI---PTMSPLIVSQYHLPELWRLFTYCLINVGIFHIIFNILIQL 193
Query: 297 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTV---GGTGPVFAIIGA 347
G + + + +++Y +G + G++ S +PTV GG F++I +
Sbjct: 194 AIGVPL-ELVHRWRIYILYFMGVLFGSILSL--ALDPTVFLCGGAAGSFSLIAS 244
>sp|Q076A4|MYH8_CANFA Myosin-8 OS=Canis familiaris GN=MYH8 PE=3 SV=1
Length = 1939
Score = 32.7 bits (73), Expect = 6.7, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 24/158 (15%)
Query: 61 QDVAELPVQWKMSNIT---SHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAK 117
+D+ E +Q + + T H S ++ + L+ V+ + SE ++ I
Sbjct: 1181 RDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEI------- 1233
Query: 118 LKDDSIQNS---SESSGEIEE----LHSRSGEINAKTE-----LDSLDAYLGKLNTDAKF 165
DD N+ S++ G +E+ L + E+ K E ++ L A +L T+A
Sbjct: 1234 --DDLASNAETISKAKGNLEKMCRTLEDQVSELKTKEEEQQRLINDLTAQRARLQTEAGE 1291
Query: 166 STDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNK 203
+ Q E++ + +QLS SK + + +LK E K
Sbjct: 1292 YSRQLDEKDALVSQLSRSKQASTQQIEELKRQLEEETK 1329
>sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus
musculus GN=Parl PE=1 SV=1
Length = 377
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 275 LVTPMFL----HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
L +PM L H LFH+A + + L +F + G F +Y G+ N S++
Sbjct: 203 LCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFVAVYLSAGVISNFVSYVCK 262
Query: 331 PE-----PTVGGTGPVFAIIGA 347
P++G +G + ++ A
Sbjct: 263 VATGRYGPSLGASGAIMTVLAA 284
>sp|Q6C3V4|NUF2_YARLI Probable kinetochore protein NUF2 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NUF2 PE=3 SV=1
Length = 452
Score = 32.7 bits (73), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 77 SHVGSFSKKASTKEKLRMVRCAAKSSDS-----ECQIRILESYLAKLKDDSIQNSSESSG 131
+H + K + KE L V ++ ++ + +I ES +A+++ D ++ ++S
Sbjct: 319 AHSKAVRKITTQKELLEHVGINSRQAEGRRDVLQQEIEAAESKIARIQQDMSESDRQTSR 378
Query: 132 EIEELHSRSGEINAKTELDSLDAYLGKLNTD----AKFSTDQTTERNLVAAQLSISKSSK 187
+EEL + G ++A+ L + + NT A+ D TER+ AQL +++
Sbjct: 379 RMEELRRQIGTLDAERAL-----VVQQNNTAQKRLAELENDMATERDRYEAQLKMAREEA 433
Query: 188 RGYMGKLKGY 197
+ + Y
Sbjct: 434 EKLQTQFREY 443
>sp|Q2UGP9|RTC5_ASPOR Restriction of telomere capping protein 5 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=rtc5 PE=3 SV=1
Length = 629
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 386 PVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCS----VTAGLMHLRAWRSESLAA 441
P+ + A G++ T N TW T L GA+ S VT G + W++ S A
Sbjct: 380 PIFSTAAHGSSLTSFSHNVLTWQSGTLLLLEGAVAEPSGEQMVTLGAYLPQPWKTGSSAQ 439
Query: 442 ASSLAILSCFVC------KEIILGGHRGKRLQTLEAFAV 474
+S L+ S C K ++L G+ +Q + A
Sbjct: 440 SSRLSETSALPCLFQLSPKHLLLPGNPSSSIQNPDTPAA 478
>sp|B8N9M5|RTC5_ASPFN Restriction of telomere capping protein 5 OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=rtc5 PE=3 SV=1
Length = 629
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 386 PVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCS----VTAGLMHLRAWRSESLAA 441
P+ + A G++ T N TW T L GA+ S VT G + W++ S A
Sbjct: 380 PIFSTAAHGSSLTSFSHNVLTWQSGTLLLLEGAVAEPSGEQMVTLGAYLPQPWKTGSSAQ 439
Query: 442 ASSLAILSCFVC------KEIILGGHRGKRLQTLEAFAV 474
+S L+ S C K ++L G+ +Q + A
Sbjct: 440 SSRLSETSALPCLFQLSPKHLLLPGNPSSSIQNPDTPAA 478
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,973,789
Number of Sequences: 539616
Number of extensions: 6941637
Number of successful extensions: 17905
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 17847
Number of HSP's gapped (non-prelim): 108
length of query: 493
length of database: 191,569,459
effective HSP length: 122
effective length of query: 371
effective length of database: 125,736,307
effective search space: 46648169897
effective search space used: 46648169897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)