Query 011129
Match_columns 493
No_of_seqs 375 out of 1617
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 21:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 3.1E-28 1E-32 229.0 14.7 170 223-401 3-173 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 2E-28 6.8E-33 233.1 7.0 169 222-400 7-177 (196)
3 2gqc_A Rhomboid intramembrane 98.7 4E-09 1.4E-13 84.2 2.1 55 137-191 1-65 (70)
4 2lep_A Rhomboid protease GLPG 97.8 2E-08 6.9E-13 79.9 0.0 55 137-191 1-62 (69)
5 1uta_A FTSN, MSGA, cell divisi 49.6 12 0.00042 29.3 3.2 34 135-168 9-42 (81)
6 2hfv_A Hypothetical protein RP 44.7 24 0.00081 29.4 4.3 48 137-184 23-85 (97)
7 1x60_A Sporulation-specific N- 35.7 26 0.0009 26.9 3.2 35 135-169 9-43 (79)
8 2y9j_Y Lipoprotein PRGK, prote 9.8 2.9E+02 0.01 24.7 4.5 40 145-184 8-53 (170)
9 1laj_A Capsid protein; anti-pa 9.4 66 0.0022 30.0 0.0 41 83-123 6-47 (217)
10 1e0f_I Haemadin, factor IIA; c 8.9 1.1E+02 0.0038 22.0 1.0 18 8-36 6-23 (57)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.95 E-value=3.1e-28 Score=229.01 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=132.8
Q ss_pred chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHHH
Q 011129 223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ 301 (493)
Q Consensus 223 ~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~~ 301 (493)
.||+| .++++|+++|+++...+... .. .+....+..+.++||||++|++|+|.|+.|+++||++++.+|..
T Consensus 3 ~~pvt~~li~~~v~vf~~~~~~~~~~-~~-------~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~ 74 (181)
T 2xov_A 3 AGPVTWVMMIACVVVFIAMQILGDQE-VM-------LWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGA 74 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHH-HH-------HHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCcHH-HH-------HhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 46889 99999999999987654210 01 11112222357899999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHhhhhcCCCceeccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHhhh
Q 011129 302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 381 (493)
Q Consensus 302 lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i~ 381 (493)
+|+.+|+.|++.+|+++++.|+++++++.++..+|+||++||++|+.++....+++.. ..++.+...+..+++++++..
T Consensus 75 ~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~ 153 (181)
T 2xov_A 75 VEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWFD 153 (181)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGS-CCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCce-eeeHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988776799999999999998876554444331 223445555556666665543
Q ss_pred hcCCChhhhhhHhhhhhccc
Q 011129 382 SNFGPVDTWAHLGAAFTDLG 401 (493)
Q Consensus 382 ~~~~~Is~~AHLgGll~GLl 401 (493)
...+++|+.||++|+++|++
T Consensus 154 ~~~~~v~~~aHlgG~l~G~l 173 (181)
T 2xov_A 154 LFGMSMANGAHIAGLAVGLA 173 (181)
T ss_dssp SSCCSSCHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHH
Confidence 33468999999999999953
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.95 E-value=2e-28 Score=233.15 Aligned_cols=169 Identities=18% Similarity=0.273 Sum_probs=127.9
Q ss_pred cchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHH
Q 011129 222 SNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP 300 (493)
Q Consensus 222 ~~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~ 300 (493)
+.||+| .++++|+++|+++...+... . ..+.+..+..+..+||||++|++|+|.|+.|+++||++++.+|.
T Consensus 7 ~~~pvt~~li~~~v~vfll~~~~~~~~-~-------~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~ 78 (196)
T 2nr9_A 7 QQGKITLILTALCVLIYIAQQLGFEDD-I-------MYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGG 78 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCHHH-H-------HHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCcHH-H-------HHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 446888 99999999999987654210 0 11112222235789999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHhhhhcCCCceeccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHhh
Q 011129 301 QVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 380 (493)
Q Consensus 301 ~lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i 380 (493)
.+|+.+|+.+++.+|+++++.|+++++++.++..+|+||+|||++|+.++....+++.. .++.+...++++++++++.
T Consensus 79 ~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (196)
T 2nr9_A 79 MIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFI 156 (196)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSC--CCCCSSTTTTTTTTTHHHH
T ss_pred HHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhh--cchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776799999999999998877655444331 1222222233333444443
Q ss_pred hh-cCCChhhhhhHhhhhhcc
Q 011129 381 IS-NFGPVDTWAHLGAAFTDL 400 (493)
Q Consensus 381 ~~-~~~~Is~~AHLgGll~GL 400 (493)
.. ..+++|+.||+||+++|+
T Consensus 157 ~~~~~~~v~~~aHlgG~l~G~ 177 (196)
T 2nr9_A 157 SPLFGVEMGNAAHISGLIVGL 177 (196)
T ss_dssp SCSSCCTTCHHHHHHHHHHHH
T ss_pred HhccCCCccHHHHHHHHHHHH
Confidence 21 224799999999999995
No 3
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=98.70 E-value=4e-09 Score=84.21 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=50.0
Q ss_pred hhh--hccCCChhHHHHHHHHHhhcCCcceeecCccc------hhhhHHHHHhhhh--hccCCCC
Q 011129 137 HSR--SGEINAKTELDSLDAYLGKLNTDAKFSTDQTT------ERNLVAAQLSISK--SSKRGYM 191 (493)
Q Consensus 137 m~~--~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~~------de~~~~~~~~e~~--~~~p~~~ 191 (493)
|.+ +++++|||.||+|+|||+++||++++++++++ ||++.+++++|++ .++|+++
T Consensus 1 M~~~~v~~l~~~r~aqaf~dyL~~~~I~~~v~~~~~~~~Lwl~d~~~~~~a~~el~~F~~~P~~~ 65 (70)
T 2gqc_A 1 MSAVQVLKFPLSVDLAGFVGLLRRLNVPHRVSEESGQQVLWVPDERLAEQVRELYRRYPEGDPQA 65 (70)
T ss_dssp CCCCEEEEECTTTTGGGHHHHHHTTTCCSEEEEETTEEEEECCCSSHHHHHHHHHTTSSSTTTTS
T ss_pred CCcceEEEECCHHHHHHHHHHHHHCCCcEEEEECCCceEEEEcCHHHHHHHHHHHHHHHhCCCcc
Confidence 555 89999999999999999999999999987765 7889999999999 8999998
No 4
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=97.84 E-value=2e-08 Score=79.93 Aligned_cols=55 Identities=2% Similarity=-0.052 Sum_probs=48.7
Q ss_pred hhhhccCCChhHHHHHHHHHhhcCCcceeecCccc-----hhhhHHHHHhhhh--hccCCCC
Q 011129 137 HSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTT-----ERNLVAAQLSISK--SSKRGYM 191 (493)
Q Consensus 137 m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~~-----de~~~~~~~~e~~--~~~p~~~ 191 (493)
|+++++++||++||+|+|||+++||+++++++..+ ||++.++|+++++ .++|+|-
T Consensus 1 M~~l~~~~N~~~Aq~f~dyL~s~gI~~~v~~e~~~elWl~de~~~~~A~~el~~f~~~P~~~ 62 (69)
T 2lep_A 1 MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQAERVRAELARFLENPADL 62 (69)
Confidence 78899999999999999999999999999987543 7778899999998 7888775
No 5
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=49.56 E-value=12 Score=29.26 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=30.6
Q ss_pred hhhhhhccCCChhHHHHHHHHHhhcCCcceeecC
Q 011129 135 ELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTD 168 (493)
Q Consensus 135 ~~m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~ 168 (493)
....+++.+.++..|+++.+-|+.+|.++.++..
T Consensus 9 ~~~vQvGaF~~~~~A~~l~~~L~~~G~~a~i~~~ 42 (81)
T 1uta_A 9 RWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTN 42 (81)
T ss_dssp BCCCBCCEESCHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEEeC
Confidence 3589999999999999999999999999988853
No 6
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=44.68 E-value=24 Score=29.40 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=40.7
Q ss_pred hhhhccCCChhHHHHHHHHHhhcCCcceeecCcc-----------c----hhhhHHHHHhhhh
Q 011129 137 HSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQT-----------T----ERNLVAAQLSISK 184 (493)
Q Consensus 137 m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~-----------~----de~~~~~~~~e~~ 184 (493)
|.++.+-+||-.|+-..+-|+..||++.+..+.- . +|++.++|+..++
T Consensus 23 M~eL~ra~d~v~a~~~k~LLe~aGI~~fv~De~ms~~~GeIg~~P~rwlV~eed~~~Ar~LL~ 85 (97)
T 2hfv_A 23 LRELLRTNDAVLLSAVGALLDGADIGHLVLDQNMSILEGSLGVIPRRVLVHEDDLAGARRLLT 85 (97)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHTTCCEECCSCCCCSSSCCSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred ceeeeecCCHHHHHHHHHHHHhCCCCEEEcCCcchhhcCccccCcEEEEEChhhHHHHHHHHH
Confidence 8999999999999999999999999999985421 1 6777888888886
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=35.71 E-value=26 Score=26.92 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=30.8
Q ss_pred hhhhhhccCCChhHHHHHHHHHhhcCCcceeecCc
Q 011129 135 ELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQ 169 (493)
Q Consensus 135 ~~m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~ 169 (493)
....+++.+.++..|+++.+-|+..|.++.+...+
T Consensus 9 ~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~~~~ 43 (79)
T 1x60_A 9 LYKVQIGAFKVKANADSLASNAEAKGFDSIVLLKD 43 (79)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred CEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEecCC
Confidence 35899999999999999999999999999887533
No 8
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=9.82 E-value=2.9e+02 Score=24.74 Aligned_cols=40 Identities=15% Similarity=0.036 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHhhcCCcceeecCc---cc---hhhhHHHHHhhhh
Q 011129 145 AKTELDSLDAYLGKLNTDAKFSTDQ---TT---ERNLVAAQLSISK 184 (493)
Q Consensus 145 ~~~~aqaf~dYl~~~~i~~~v~~~~---~~---de~~~~~~~~e~~ 184 (493)
+++.|.+-.+.|++.||+.++..++ .. ++++..++|..+.
T Consensus 8 ~~~da~~i~~~L~~~~I~y~~~~~~~~g~~I~Vp~~~~~~ar~~La 53 (170)
T 2y9j_Y 8 DQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIK 53 (170)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECTTSCEEEEECGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCeEEEECHHHHHHHHHHHH
Confidence 4677888999999999999998762 22 6777888887777
No 9
>1laj_A Capsid protein; anti-parallel beta sheets, jelly roll, T=3 icosahedral virus, protein-RNA complex, disulphide bridge, icosahedral virus; 3.40A {Tomato aspermy virus} SCOP: b.121.4.5
Probab=9.44 E-value=66 Score=29.98 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=2.6
Q ss_pred ccccchhhhhhhhhhccCCCC-cHHHHHHHHHHHhhhccccC
Q 011129 83 SKKASTKEKLRMVRCAAKSSD-SECQIRILESYLAKLKDDSI 123 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~kl~~~~~ 123 (493)
+-+.|.|+|-.++.++..+.+ .||-||+|-.-+.+|-.-.+
T Consensus 6 s~~~sRrPRRG~R~s~~~~~~A~~~~lraLtqQl~Rl~~~~a 47 (217)
T 1laj_A 6 TGGGSRRPRRGRRNNNNNNSTARDKALLALTQQVNRLANIAS 47 (217)
T ss_dssp --------------------------------------CHHH
T ss_pred CCCCCCCCcCccccCcccccccchHHHHHHHHHHHHHHHHHh
Confidence 445678888888866545555 78999999999998877665
No 10
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=8.89 E-value=1.1e+02 Score=21.98 Aligned_cols=18 Identities=33% Similarity=0.870 Sum_probs=13.3
Q ss_pred cccCCCCCccCchhhhhhccccccccccc
Q 011129 8 CKIPSKEQLLPIPKIVRQNERGFKCHCIS 36 (493)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (493)
-|+||.| .|-|+.|+|..
T Consensus 6 gkvpcpd-----------gevgytcdcge 23 (57)
T 1e0f_I 6 GKVPCPD-----------GEVGYTCDCGE 23 (57)
T ss_dssp SSSBCCS-----------SSCSSCEECSS
T ss_pred ccccCCC-----------CceeeeccCCc
Confidence 3777766 47899999954
Done!