Query 011129
Match_columns 493
No_of_seqs 375 out of 1617
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 21:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011129.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011129hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b45a1 f.51.1.1 (A:91-270) Gl 99.9 1.5E-27 1.1E-31 220.8 14.4 171 222-401 2-173 (180)
2 d2nr9a1 f.51.1.1 (A:4-192) Glp 99.9 5.2E-27 3.8E-31 219.3 7.9 169 223-401 5-175 (189)
3 d1utaa_ d.58.52.1 (A:) Cell di 56.2 4 0.00029 30.1 3.3 36 135-170 5-40 (77)
4 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 32.3 24 0.0017 26.1 4.3 27 101-127 22-48 (80)
5 d4cpai_ g.3.2.1 (I:) Carboxype 30.9 6.4 0.00046 24.9 0.6 12 4-16 4-15 (37)
6 d1jqga2 d.58.3.1 (A:4P-100P) P 15.3 95 0.0069 22.7 4.8 62 102-171 14-75 (92)
7 d1ql3a_ a.3.1.1 (A:) Cytochrom 13.8 48 0.0035 25.1 2.6 21 140-160 79-99 (99)
8 d1mjea2 a.171.1.1 (A:2752-2887 13.0 45 0.0033 22.4 1.9 19 104-122 25-43 (49)
9 d3dtua1 f.24.1.1 (A:14-551) Ba 11.9 6E+02 0.043 24.5 12.2 45 311-355 374-430 (538)
10 d1udxa3 d.242.1.1 (A:341-416) 11.1 37 0.0027 24.9 1.0 36 132-167 19-54 (76)
No 1
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=1.5e-27 Score=220.78 Aligned_cols=171 Identities=16% Similarity=0.121 Sum_probs=136.8
Q ss_pred cchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHH
Q 011129 222 SNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP 300 (493)
Q Consensus 222 ~~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~ 300 (493)
+.+|+| .++++|+++|+.....+.... ..+.....+...++||||++|++|+|.|+.|+++||+.++.+|.
T Consensus 2 r~~pvT~~li~i~~~vf~~~~~~~~~~~--------~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~ 73 (180)
T d3b45a1 2 RAGPVTWVMMIACVVVFIAMQILGDQEV--------MLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGG 73 (180)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHH--------HHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHH--------HHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 346889 999999999998765543211 11222223446789999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHhhhhcCCCceeccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHhh
Q 011129 301 QVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 380 (493)
Q Consensus 301 ~lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i 380 (493)
.+|+.+|+++++.+|+++++.|++++.++.++...|+||+++|++++.......++... ...+.....+..++++..+.
T Consensus 74 ~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 152 (180)
T d3b45a1 74 AVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWF 152 (180)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGS-CCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHhccchhheeeeeHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhhhcchhH-HhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999998877766543 33344444455555555555
Q ss_pred hhcCCChhhhhhHhhhhhccc
Q 011129 381 ISNFGPVDTWAHLGAAFTDLG 401 (493)
Q Consensus 381 ~~~~~~Is~~AHLgGll~GLl 401 (493)
....+++++.||++|+++|++
T Consensus 153 ~~~~~~v~~~aHlgG~l~G~~ 173 (180)
T d3b45a1 153 DLFGMSMANGAHIAGLAVGLA 173 (180)
T ss_dssp TSSCCSSCHHHHHHHHHHHHH
T ss_pred HhccCchHHHHHHHHHHHHHH
Confidence 445578999999999999963
No 2
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=99.93 E-value=5.2e-27 Score=219.30 Aligned_cols=169 Identities=17% Similarity=0.239 Sum_probs=131.2
Q ss_pred chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHHH
Q 011129 223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ 301 (493)
Q Consensus 223 ~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~~ 301 (493)
.+|+| +++++|+++|+++....... .. .+.......+.++||||++|++|+|.|+.|+++||++++.+|..
T Consensus 5 ~~pvt~~i~~~~~~v~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~ 76 (189)
T d2nr9a1 5 QGKITLILTALCVLIYIAQQLGFEDD--IM------YLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGM 76 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHH--HH------HHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHH--HH------HHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 35888 99999999999887643221 10 11111223457899999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHhhhhcCCCceeccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHhhh
Q 011129 302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 381 (493)
Q Consensus 302 lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i~ 381 (493)
+|+.+|+.+++.+|+++++.|++++.+..+++.+|+||++||++++++...+.++.....+ ......++++++++++.
T Consensus 77 ~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 154 (189)
T d2nr9a1 77 IERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLP--EGFFTMLLVGIALGFIS 154 (189)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCCC--CSSTTTTTTTTTHHHHS
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHhhhHhccH--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888899999999999999988887776653222 22222333444444443
Q ss_pred h-cCCChhhhhhHhhhhhccc
Q 011129 382 S-NFGPVDTWAHLGAAFTDLG 401 (493)
Q Consensus 382 ~-~~~~Is~~AHLgGll~GLl 401 (493)
. ..+++++.||++|+++|++
T Consensus 155 ~~~~~~v~~~aHl~G~l~G~~ 175 (189)
T d2nr9a1 155 PLFGVEMGNAAHISGLIVGLI 175 (189)
T ss_dssp CSSCCTTCHHHHHHHHHHHHH
T ss_pred hccCCChHHHHHHHHHHHHHH
Confidence 3 2368999999999999953
No 3
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=56.17 E-value=4 Score=30.05 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=31.9
Q ss_pred hhhhhhccCCChhHHHHHHHHHhhcCCcceeecCcc
Q 011129 135 ELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQT 170 (493)
Q Consensus 135 ~~m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~ 170 (493)
..++++++|.+++-|+.+.+-|...|+++.+++.+.
T Consensus 5 ~y~vQvGaF~~~~nA~~l~~~L~~~g~~~~i~~~~~ 40 (77)
T d1utaa_ 5 RWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNG 40 (77)
T ss_dssp BCCCBCCEESCHHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred eEEEEEEEecCHHHHHHHHHHHHhcCCcceecCCCc
Confidence 467999999999999999999999999999986443
No 4
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.34 E-value=24 Score=26.10 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHHHHhhhccccCCCCC
Q 011129 101 SSDSECQIRILESYLAKLKDDSIQNSS 127 (493)
Q Consensus 101 ~~~~~~~~~~~d~~~~kl~~~~~~~s~ 127 (493)
..-+++|++.|.+||.++.....-|+.
T Consensus 22 t~ft~~Q~~~L~~~fe~~~~~~~~p~~ 48 (80)
T d1wh7a_ 22 TKFTAEQKEKMLAFAERLGWRIQKHDD 48 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCCCSSTT
T ss_pred ccCCHHHHHHHHHHHHHhcccccCcCH
Confidence 457899999999999998765555543
No 5
>d4cpai_ g.3.2.1 (I:) Carboxypeptidase A inhibitor {Potato [TaxId: 4113]}
Probab=30.86 E-value=6.4 Score=24.88 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=8.6
Q ss_pred cccccccCCCCCc
Q 011129 4 VQLCCKIPSKEQL 16 (493)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (493)
=|+||| |||.|.
T Consensus 4 dpic~k-pc~t~d 15 (37)
T d4cpai_ 4 DPICNK-PCKTHD 15 (37)
T ss_dssp CTTTTC-BCSSSS
T ss_pred CcccCC-Cccccc
Confidence 378887 787763
No 6
>d1jqga2 d.58.3.1 (A:4P-100P) Procarboxypeptidase A {Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]}
Probab=15.31 E-value=95 Score=22.74 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHHHHhhhccccCCCCCCCchhhhhhhhhhccCCChhHHHHHHHHHhhcCCcceeecCccc
Q 011129 102 SDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTT 171 (493)
Q Consensus 102 ~~~~~~~~~~d~~~~kl~~~~~~~s~~~~~~~~~~m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~~ 171 (493)
+.++.|++.|...-+++.-+-=.|+...+ ..+ -.=.|...+.|.++|+..+|+-++..++-+
T Consensus 14 ~~~~~q~~~L~~le~~~~~dfW~~~~~~~--~vd------I~V~p~~~~~f~~~L~~~~i~y~v~i~dvQ 75 (92)
T d1jqga2 14 VASMDQVKLVHDFENDLMLDVWSDAVPGR--PGK------VLVPKFKREIFENFLKQSGVQYKLEVENVK 75 (92)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEECCBTTB--CEE------EEECGGGHHHHHHHHHHHTCEEEEEESCTH
T ss_pred cCCHHHHHHHHHHHhccCCcEecCCCCCC--eEE------EEECHHHHHHHHHHHHHcCCeEEEEeccHH
Confidence 45677777776665554432113322211 111 234678889999999999999999876644
No 7
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=13.77 E-value=48 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=17.6
Q ss_pred hccCCChhHHHHHHHHHhhcC
Q 011129 140 SGEINAKTELDSLDAYLGKLN 160 (493)
Q Consensus 140 ~~~~~~~~~aqaf~dYl~~~~ 160 (493)
...+.+++.++++++||++++
T Consensus 79 ~~gl~~~~d~~dliaYLks~~ 99 (99)
T d1ql3a_ 79 FAGLPKIEDRANLIAYLEGQQ 99 (99)
T ss_dssp CCCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHhhcC
Confidence 345678999999999999975
No 8
>d1mjea2 a.171.1.1 (A:2752-2887) BRCA2 tower domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.04 E-value=45 Score=22.41 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHHhhhcccc
Q 011129 104 SECQIRILESYLAKLKDDS 122 (493)
Q Consensus 104 ~~~~~~~~d~~~~kl~~~~ 122 (493)
++.|++.||.-|.|.|++-
T Consensus 25 a~~qqKklE~LftKIq~eF 43 (49)
T d1mjea2 25 AEAQQKKLEALFTKVHTEG 43 (49)
T ss_dssp HHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999864
No 9
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.92 E-value=6e+02 Score=24.51 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhh-----hcCCCc------eecc-chHHHHHHHHHHHHHhcc
Q 011129 311 FFLIYTLGGISGNLTSF-----LHTPEP------TVGG-TGPVFAIIGAWLIYQFQN 355 (493)
Q Consensus 311 ~l~lyLlsgi~g~l~~~-----l~~~~~------~vGa-SGaVfgLlga~~~~~~~~ 355 (493)
++.+|+++|+.|-+... ...++. +... -|++++++++.....++-
T Consensus 374 fi~~F~iGG~tGi~la~~~~d~~~HdTy~VvaHFH~v~~~g~v~~~~a~~y~w~Pk~ 430 (538)
T d3dtua1 374 FLFLFTVGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMSLGAVFGIFAGIYFWIGKM 430 (538)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTTBHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccchhhhhhcccceeeeeeeeeeeccHHHHHHHHHHHHHHHHH
Confidence 44566677776655532 222321 2244 488999999777666653
No 10
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=11.14 E-value=37 Score=24.88 Aligned_cols=36 Identities=8% Similarity=-0.059 Sum_probs=30.5
Q ss_pred hhhhhhhhhccCCChhHHHHHHHHHhhcCCcceeec
Q 011129 132 EIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFST 167 (493)
Q Consensus 132 ~~~~~m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~ 167 (493)
+.-+.+.....++|++....|.+.|++.|++-.++.
T Consensus 19 ~~ier~~~~t~~~~~e~~~~f~~~l~~~Gv~~~L~~ 54 (76)
T d1udxa3 19 PEVERYLARIKGDLMEAAGYLQEVFRRQGVEAALRA 54 (76)
T ss_dssp HHHHHHHTTEEECTGGGHHHHHHHHHHTTHHHHHHT
T ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHH
Confidence 344557778899999999999999999999888764
Done!