Query         011130
Match_columns 493
No_of_seqs    240 out of 1621
Neff          8.4 
Searched_HMMs 46136
Date          Fri Mar 29 08:27:17 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011130hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG2450 Aldehyde dehydrogenase 100.0  2E-100  3E-105  762.7  41.0  426   67-492    22-501 (501)
  2 PLN02466 aldehyde dehydrogenas 100.0 3.7E-99  8E-104  800.5  53.5  484    1-493     1-538 (538)
  3 KOG2451 Aldehyde dehydrogenase 100.0 3.6E-92 7.7E-97  672.0  37.5  418   65-486    23-498 (503)
  4 PLN02766 coniferyl-aldehyde de 100.0   2E-89 4.3E-94  723.2  52.6  433   61-493    16-501 (501)
  5 PRK11241 gabD succinate-semial 100.0 4.9E-89 1.1E-93  716.4  51.2  417   66-486    11-481 (482)
  6 PLN02419 methylmalonate-semial 100.0 6.1E-88 1.3E-92  714.1  52.1  428   54-487   102-590 (604)
  7 COG1012 PutA NAD-dependent ald 100.0   5E-88 1.1E-92  703.3  49.6  413   67-488     2-470 (472)
  8 cd07140 ALDH_F1L_FTFDH 10-form 100.0 7.7E-87 1.7E-91  701.1  51.6  421   66-486     6-485 (486)
  9 cd07142 ALDH_F2BC Arabidosis a 100.0 1.2E-86 2.7E-91  700.6  51.3  422   63-484     1-475 (476)
 10 TIGR03374 ABALDH 1-pyrroline d 100.0 1.1E-86 2.4E-91  698.1  50.2  417   66-486     2-472 (472)
 11 cd07559 ALDH_ACDHII_AcoD-like  100.0 4.3E-86 9.2E-91  696.2  49.9  418   67-487     2-480 (480)
 12 cd07117 ALDH_StaphAldA1 Unchar 100.0 5.4E-86 1.2E-90  694.0  50.4  418   67-487     2-475 (475)
 13 PLN02278 succinic semialdehyde 100.0 1.3E-85 2.8E-90  694.4  51.1  417   66-486    25-495 (498)
 14 PRK13252 betaine aldehyde dehy 100.0 1.6E-85 3.5E-90  694.2  50.7  420   64-487     5-481 (488)
 15 cd07113 ALDH_PADH_NahF Escheri 100.0 1.7E-85 3.7E-90  692.1  50.5  415   68-486     2-476 (477)
 16 cd07141 ALDH_F1AB_F2_RALDH1 NA 100.0 2.2E-85 4.7E-90  692.0  51.2  425   61-485     2-480 (481)
 17 PLN02467 betaine aldehyde dehy 100.0 1.4E-84   3E-89  686.0  52.4  420   64-487     6-489 (503)
 18 cd07143 ALDH_AldA_AN0554 Asper 100.0 2.1E-84 4.5E-89  683.0  51.3  421   66-487     7-481 (481)
 19 PLN02315 aldehyde dehydrogenas 100.0 1.9E-84 4.1E-89  684.4  50.4  417   63-487    18-495 (508)
 20 cd07116 ALDH_ACDHII-AcoD Ralst 100.0 1.4E-84   3E-89  685.6  49.2  417   66-487     1-479 (479)
 21 TIGR03216 OH_muco_semi_DH 2-hy 100.0 2.4E-84 5.1E-89  684.2  50.5  415   67-486     2-480 (481)
 22 PRK13473 gamma-aminobutyraldeh 100.0 2.5E-84 5.4E-89  683.8  49.8  419   65-487     2-474 (475)
 23 TIGR02299 HpaE 5-carboxymethyl 100.0 7.1E-84 1.5E-88  682.2  49.4  416   67-487     2-478 (488)
 24 cd07119 ALDH_BADH-GbsA Bacillu 100.0 1.6E-83 3.6E-88  678.8  51.5  417   69-487     1-474 (482)
 25 cd07091 ALDH_F1-2_Ald2-like AL 100.0 1.3E-83 2.9E-88  678.5  50.7  420   66-485     4-476 (476)
 26 PRK09847 gamma-glutamyl-gamma- 100.0 1.7E-83 3.6E-88  677.7  51.4  420   66-487    20-493 (494)
 27 cd07144 ALDH_ALD2-YMR170C Sacc 100.0 1.6E-83 3.4E-88  678.9  50.6  418   66-486     8-483 (484)
 28 cd07085 ALDH_F6_MMSDH Methylma 100.0 1.8E-83   4E-88  677.3  49.8  415   67-486     2-477 (478)
 29 cd07086 ALDH_F7_AASADH-like NA 100.0 6.2E-83 1.4E-87  672.8  49.7  414   68-487     1-477 (478)
 30 TIGR01236 D1pyr5carbox1 delta- 100.0 4.6E-83 9.9E-88  677.6  48.8  423   64-490    30-524 (533)
 31 cd07130 ALDH_F7_AASADH NAD+-de 100.0 9.9E-83 2.1E-87  670.2  50.0  411   69-487     2-473 (474)
 32 cd07097 ALDH_KGSADH-YcbD Bacil 100.0 8.4E-83 1.8E-87  671.5  48.8  413   66-484     1-472 (473)
 33 TIGR01804 BADH glycine betaine 100.0 9.2E-83   2E-87  670.6  48.8  410   69-481     1-467 (467)
 34 cd07123 ALDH_F4-17_P5CDH Delta 100.0 1.1E-82 2.5E-87  675.0  49.2  419   64-487    31-520 (522)
 35 cd07088 ALDH_LactADH-AldA Esch 100.0 1.5E-82 3.3E-87  669.8  48.7  412   69-484     1-467 (468)
 36 cd07124 ALDH_PutA-P5CDH-RocA D 100.0 2.7E-82 5.8E-87  672.4  49.2  416   66-487    33-512 (512)
 37 cd07139 ALDH_AldA-Rv0768 Mycob 100.0 4.1E-82 8.9E-87  666.7  50.0  414   68-484     1-470 (471)
 38 PRK13968 putative succinate se 100.0 3.4E-82 7.5E-87  663.0  48.4  401   81-486     7-460 (462)
 39 cd07131 ALDH_AldH-CAJ73105 Unc 100.0 9.6E-82 2.1E-86  665.1  49.8  416   68-487     1-477 (478)
 40 cd07138 ALDH_CddD_SSP0762 Rhod 100.0   6E-82 1.3E-86  664.2  48.1  409   68-484     1-465 (466)
 41 cd07151 ALDH_HBenzADH NADP+-de 100.0   1E-81 2.2E-86  661.9  48.8  408   72-486     1-464 (465)
 42 PRK09406 gabD1 succinic semial 100.0   1E-81 2.2E-86  658.6  47.5  398   83-485     3-456 (457)
 43 cd07111 ALDH_F16 Aldehyde dehy 100.0 1.3E-81 2.7E-86  660.6  47.6  404   65-482    21-477 (480)
 44 PRK09457 astD succinylglutamic 100.0 3.1E-81 6.7E-86  660.4  49.9  416   67-489     2-473 (487)
 45 TIGR01237 D1pyr5carbox2 delta- 100.0 3.3E-81 7.1E-86  663.4  49.1  417   64-486    31-510 (511)
 46 TIGR01780 SSADH succinate-semi 100.0 1.9E-81 4.1E-86  656.9  46.3  393   85-481     1-448 (448)
 47 cd07107 ALDH_PhdK-like Nocardi 100.0 3.8E-81 8.3E-86  656.4  47.1  399   85-487     1-456 (456)
 48 PLN00412 NADP-dependent glycer 100.0   1E-80 2.2E-85  656.8  50.2  417   64-491    14-492 (496)
 49 TIGR01722 MMSDH methylmalonic  100.0 1.2E-80 2.6E-85  655.3  50.4  414   67-486     2-476 (477)
 50 cd07120 ALDH_PsfA-ACA09737 Pse 100.0 7.8E-81 1.7E-85  651.6  48.3  398   85-485     1-455 (455)
 51 TIGR03250 PhnAcAld_DH putative 100.0 1.4E-80   3E-85  653.0  49.9  408   65-486     3-471 (472)
 52 PRK03137 1-pyrroline-5-carboxy 100.0 1.7E-80 3.6E-85  658.5  49.1  416   64-486    35-513 (514)
 53 cd07083 ALDH_P5CDH ALDH subfam 100.0 2.8E-80 6.1E-85  655.2  49.7  417   63-486    16-499 (500)
 54 cd07106 ALDH_AldA-AAD23400 Str 100.0 2.9E-80 6.3E-85  648.3  46.8  393   85-484     1-445 (446)
 55 cd07112 ALDH_GABALDH-PuuC Esch 100.0 5.5E-80 1.2E-84  647.8  48.9  404   81-484     2-461 (462)
 56 cd07115 ALDH_HMSADH_HapE Pseud 100.0 3.3E-80 7.1E-85  649.2  47.1  400   85-487     1-453 (453)
 57 cd07118 ALDH_SNDH Gluconobacte 100.0 4.9E-80 1.1E-84  646.8  48.0  397   86-484     2-453 (454)
 58 cd07145 ALDH_LactADH_F420-Bios 100.0 3.8E-80 8.3E-85  649.2  46.3  396   83-484     1-455 (456)
 59 PF00171 Aldedh:  Aldehyde dehy 100.0 2.2E-81 4.8E-86  659.6  36.4  405   74-483     1-462 (462)
 60 cd07090 ALDH_F9_TMBADH NAD+-de 100.0 6.1E-80 1.3E-84  647.8  47.1  397   85-486     1-455 (457)
 61 TIGR03240 arg_catab_astD succi 100.0 1.4E-79   3E-84  647.9  49.7  413   68-487     1-469 (484)
 62 cd07128 ALDH_MaoC-N N-terminal 100.0   8E-80 1.7E-84  648.6  47.3  407   67-484     2-502 (513)
 63 cd07110 ALDH_F10_BADH Arabidop 100.0 9.1E-80   2E-84  646.3  47.0  396   85-484     1-455 (456)
 64 PRK09407 gabD2 succinic semial 100.0 1.4E-79 3.1E-84  652.2  48.9  415   65-487    18-492 (524)
 65 cd07089 ALDH_CddD-AldA-like Rh 100.0 9.8E-80 2.1E-84  645.4  47.1  397   85-484     1-458 (459)
 66 cd07109 ALDH_AAS00426 Uncharac 100.0 2.4E-79 5.2E-84  642.8  46.8  395   85-484     1-453 (454)
 67 cd07150 ALDH_VaniDH_like Pseud 100.0 1.8E-79 3.9E-84  643.9  45.9  396   83-485     1-451 (451)
 68 cd07125 ALDH_PutA-P5CDH Delta( 100.0 7.5E-79 1.6E-83  646.4  49.5  413   67-487    34-508 (518)
 69 cd07082 ALDH_F11_NP-GAPDH NADP 100.0 9.5E-79   2E-83  641.5  49.5  411   66-485     2-472 (473)
 70 cd07114 ALDH_DhaS Uncharacteri 100.0 7.3E-79 1.6E-83  639.6  48.1  398   85-484     1-456 (457)
 71 PLN02174 aldehyde dehydrogenas 100.0 4.4E-79 9.6E-84  636.5  45.4  379  100-486     7-444 (484)
 72 cd07148 ALDH_RL0313 Uncharacte 100.0 7.1E-79 1.5E-83  638.2  47.1  393   84-484     2-454 (455)
 73 cd07094 ALDH_F21_LactADH-like  100.0 6.3E-79 1.4E-83  639.8  46.3  392   84-484     2-452 (453)
 74 cd07101 ALDH_SSADH2_GabD2 Myco 100.0 7.8E-79 1.7E-83  638.6  46.5  394   86-485     1-454 (454)
 75 cd07108 ALDH_MGR_2402 Magnetos 100.0 1.1E-78 2.4E-83  638.3  45.9  396   85-484     1-456 (457)
 76 TIGR02278 PaaN-DH phenylacetic 100.0 1.6E-78 3.5E-83  655.8  48.3  409   67-486     2-496 (663)
 77 cd07092 ALDH_ABALDH-YdcW Esche 100.0 1.6E-78 3.5E-83  636.5  46.7  396   85-484     1-449 (450)
 78 cd07102 ALDH_EDX86601 Uncharac 100.0 3.2E-78   7E-83  634.6  47.5  394   86-484     1-451 (452)
 79 PRK11903 aldehyde dehydrogenas 100.0 2.6E-78 5.5E-83  639.0  46.8  412   65-486     4-507 (521)
 80 TIGR01238 D1pyr5carbox3 delta- 100.0 2.3E-78 4.9E-83  637.8  46.3  398   65-481    37-499 (500)
 81 cd07147 ALDH_F21_RNP123 Aldehy 100.0 3.5E-78 7.6E-83  634.0  46.1  393   83-485     1-452 (452)
 82 cd07099 ALDH_DDALDH Methylomon 100.0 9.4E-78   2E-82  631.2  47.6  393   86-484     1-452 (453)
 83 cd07103 ALDH_F5_SSADH_GabD Mit 100.0 1.9E-77   4E-82  628.9  47.3  396   85-484     1-450 (451)
 84 cd07098 ALDH_F15-22 Aldehyde d 100.0 2.7E-77 5.8E-82  629.1  47.7  397   86-486     1-464 (465)
 85 KOG2452 Formyltetrahydrofolate 100.0 3.6E-79 7.7E-84  594.5  29.1  421   67-487   423-881 (881)
 86 cd07152 ALDH_BenzADH NAD-depen 100.0 2.9E-77 6.3E-82  625.2  45.8  386   91-484     1-442 (443)
 87 PRK11563 bifunctional aldehyde 100.0 2.5E-77 5.4E-82  650.7  46.6  413   63-486     2-508 (675)
 88 cd07093 ALDH_F8_HMSADH Human a 100.0 4.6E-77 9.9E-82  626.3  46.6  397   85-484     1-454 (455)
 89 cd07146 ALDH_PhpJ Streptomyces 100.0 7.5E-77 1.6E-81  621.9  46.2  389   84-484     2-450 (451)
 90 cd07100 ALDH_SSADH1_GabD1 Myco 100.0 1.3E-76 2.7E-81  617.2  43.2  374  105-484     1-428 (429)
 91 cd07149 ALDH_y4uC Uncharacteri 100.0 6.6E-76 1.4E-80  617.7  45.3  393   83-484     1-452 (453)
 92 PLN02203 aldehyde dehydrogenas 100.0 5.8E-75 1.3E-79  607.7  45.2  380   99-486     2-443 (484)
 93 PRK11904 bifunctional proline  100.0   2E-74 4.4E-79  644.6  49.8  410   66-487   553-1027(1038)
 94 cd07135 ALDH_F14-YMR110C Sacch 100.0 9.6E-75 2.1E-79  602.1  42.5  375  100-484     2-435 (436)
 95 cd07095 ALDH_SGSD_AstD N-succi 100.0 4.2E-74   9E-79  597.4  42.3  374  104-483     1-429 (431)
 96 cd07104 ALDH_BenzADH-like ALDH 100.0   6E-74 1.3E-78  599.2  43.6  374  104-484     1-430 (431)
 97 PTZ00381 aldehyde dehydrogenas 100.0 1.1E-73 2.3E-78  600.7  44.8  379   99-487     3-439 (493)
 98 PRK10090 aldehyde dehydrogenas 100.0 6.8E-74 1.5E-78  590.0  41.9  353  133-487     1-408 (409)
 99 cd07137 ALDH_F3FHI Plant aldeh 100.0 1.3E-73 2.8E-78  593.0  43.1  371  107-485     3-432 (432)
100 cd07136 ALDH_YwdH-P39616 Bacil 100.0 1.3E-73 2.7E-78  593.6  42.4  368  107-486     2-427 (449)
101 cd07126 ALDH_F12_P5CDH Delta(1 100.0 6.2E-73 1.3E-77  591.7  45.8  388   68-471     1-474 (489)
102 cd07105 ALDH_SaliADH Salicylal 100.0 4.5E-73 9.8E-78  591.4  42.9  373  104-485     1-432 (432)
103 cd07133 ALDH_CALDH_CalB Conife 100.0 2.1E-72 4.5E-77  585.1  43.9  371  107-484     2-433 (434)
104 cd07134 ALDH_AlkH-like Pseudom 100.0 2.4E-72 5.3E-77  584.5  43.2  372  107-484     2-432 (433)
105 PRK11809 putA trifunctional tr 100.0 7.7E-72 1.7E-76  628.7  45.8  395   68-482   649-1111(1318)
106 PRK11905 bifunctional proline  100.0 1.9E-71 4.1E-76  627.2  46.4  401   67-486   556-1018(1208)
107 cd07132 ALDH_F3AB Aldehyde deh 100.0 2.1E-71 4.5E-76  578.6  42.5  370  107-488     2-429 (443)
108 cd07087 ALDH_F3-13-14_CALDH-li 100.0 7.1E-70 1.5E-74  565.7  42.0  366  107-484     2-425 (426)
109 KOG2454 Betaine aldehyde dehyd 100.0 1.2E-69 2.6E-74  517.0  28.1  406   77-486    60-531 (583)
110 cd07078 ALDH NAD(P)+ dependent 100.0 2.2E-66 4.8E-71  542.7  43.7  375  106-484     1-431 (432)
111 cd07129 ALDH_KGSADH Alpha-Keto 100.0 6.9E-66 1.5E-70  539.2  39.1  362  105-480     1-449 (454)
112 cd07084 ALDH_KGSADH-like ALDH  100.0 1.8E-65 3.9E-70  533.9  36.3  361  106-483     2-440 (442)
113 TIGR02288 PaaN_2 phenylacetic  100.0 3.8E-64 8.2E-69  529.2  41.3  379   84-482    68-542 (551)
114 cd07127 ALDH_PAD-PaaZ Phenylac 100.0 5.8E-64 1.3E-68  529.0  41.5  394   77-484    61-544 (549)
115 KOG2456 Aldehyde dehydrogenase 100.0 1.5E-64 3.3E-69  487.0  30.1  371  105-486     4-432 (477)
116 cd07121 ALDH_EutE Ethanolamine 100.0 2.4E-63 5.1E-68  514.3  30.7  352  102-484     3-427 (429)
117 cd07081 ALDH_F20_ACDH_EutE-lik 100.0 6.6E-62 1.4E-66  503.4  31.6  355  105-485     1-438 (439)
118 KOG2455 Delta-1-pyrroline-5-ca 100.0 1.1E-61 2.3E-66  469.7  30.8  419   63-486    57-547 (561)
119 PRK00197 proA gamma-glutamyl p 100.0 4.9E-62 1.1E-66  504.1  28.5  335  103-487     4-412 (417)
120 cd07079 ALDH_F18-19_ProA-GPR G 100.0 4.3E-62 9.3E-67  502.8  27.2  329  107-485     2-404 (406)
121 PRK15398 aldehyde dehydrogenas 100.0 3.3E-61 7.1E-66  502.2  31.7  353  100-484    33-457 (465)
122 KOG2453 Aldehyde dehydrogenase 100.0 5.5E-62 1.2E-66  456.9  22.2  415   67-489    21-496 (507)
123 TIGR02518 EutH_ACDH acetaldehy 100.0 8.3E-60 1.8E-64  494.4  37.3  364   99-489     4-447 (488)
124 PLN02418 delta-1-pyrroline-5-c 100.0 1.4E-59   3E-64  511.2  35.1  330  104-486   295-696 (718)
125 COG4230 Delta 1-pyrroline-5-ca 100.0 1.2E-59 2.7E-64  466.9  30.7  408   68-483   116-575 (769)
126 PRK13805 bifunctional acetalde 100.0   3E-59 6.6E-64  522.5  33.4  371   97-493     6-457 (862)
127 cd07122 ALDH_F20_ACDH Coenzyme 100.0 4.2E-59 9.2E-64  481.6  28.3  321  105-450     1-391 (436)
128 cd06534 ALDH-SF NAD(P)+-depend 100.0 9.4E-55   2E-59  445.4  36.5  310  111-484     2-366 (367)
129 cd07077 ALDH-like NAD(P)+-depe 100.0 1.8E-55 3.8E-60  454.0  27.4  322  110-484     1-396 (397)
130 TIGR01092 P5CS delta l-pyrroli 100.0 1.3E-54 2.9E-59  473.2  34.6  329  104-487   287-691 (715)
131 TIGR00407 proA gamma-glutamyl  100.0 1.3E-54 2.8E-59  443.6  27.8  323  112-481     1-398 (398)
132 COG0014 ProA Gamma-glutamyl ph 100.0 1.8E-28   4E-33  239.3  19.8  334  103-486     3-411 (417)
133 KOG4165 Gamma-glutamyl phospha  99.9 7.1E-23 1.5E-27  193.4  17.6  329  105-486     2-405 (433)
134 cd07080 ALDH_Acyl-CoA-Red_LuxC  99.9 1.6E-19 3.5E-24  187.3  30.4  310  101-439     3-387 (422)
135 KOG2449 Methylmalonate semiald  99.5   7E-14 1.5E-18  116.7   7.3  145  307-460     8-154 (157)
136 PF07368 DUF1487:  Protein of u  99.3 5.3E-11 1.2E-15  109.1  15.5  202  265-488     6-212 (215)
137 PF05893 LuxC:  Acyl-CoA reduct  99.1 3.3E-07 7.1E-12   94.5  30.3  232  217-480   158-399 (399)
138 COG0141 HisD Histidinol dehydr  92.5     7.9 0.00017   39.8  16.5   81  398-482   300-385 (425)
139 PF00815 Histidinol_dh:  Histid  89.3      29 0.00063   35.9  18.8   83  398-484   290-377 (412)
140 TIGR00069 hisD histidinol dehy  83.1      60  0.0013   33.4  20.7   83  398-484   273-360 (393)
141 cd06572 Histidinol_dh Histidin  74.7 1.1E+02  0.0024   31.6  24.0   82  398-483   277-363 (390)
142 PF07045 DUF1330:  Protein of u  74.5     8.1 0.00018   28.7   5.0   45  354-417    17-61  (65)
143 KOG2450 Aldehyde dehydrogenase  73.3    0.62 1.4E-05   48.5  -1.8  111  337-450    79-195 (501)
144 PRK12447 histidinol dehydrogen  69.6 1.5E+02  0.0032   31.0  24.6   83  398-484   299-386 (426)
145 PRK00877 hisD bifunctional his  69.0 1.5E+02  0.0033   30.9  25.9   83  398-484   304-391 (425)
146 COG5470 Uncharacterized conser  65.1      26 0.00056   28.2   6.1   63  337-418    13-76  (96)
147 PRK13770 histidinol dehydrogen  63.3 1.9E+02  0.0042   30.0  25.5   83  398-484   294-381 (416)
148 PRK11905 bifunctional proline   59.4      19  0.0004   42.9   6.4   43  220-262  1131-1175(1208)
149 PRK13769 histidinol dehydrogen  56.9      16 0.00036   37.1   4.7   80  398-483   257-339 (368)
150 PF12340 DUF3638:  Protein of u  55.1      59  0.0013   30.9   7.8   86  257-362    46-137 (229)
151 PLN02926 histidinol dehydrogen  51.1 3.1E+02  0.0068   28.7  25.7   83  397-483   306-393 (431)
152 PF06945 DUF1289:  Protein of u  40.2      23  0.0005   25.0   2.0   21  120-140    29-49  (51)
153 PF07287 DUF1446:  Protein of u  34.4      83  0.0018   32.1   5.7  104  245-365    63-169 (362)
154 PF03295 Pox_TAA1:  Poxvirus tr  32.6      50  0.0011   24.1   2.7   40  388-427     9-51  (63)
155 COG2237 Predicted membrane pro  27.6      61  0.0013   32.8   3.3   97  229-335    66-163 (364)
156 COG3795 Uncharacterized protei  27.3 3.9E+02  0.0084   22.7   7.8   29  388-417    73-101 (123)
157 cd01390 HMGB-UBF_HMG-box HMGB-  26.7      83  0.0018   22.7   3.3   28  120-147    38-65  (66)
158 PF13376 OmdA:  Bacteriocin-pro  22.6      55  0.0012   24.1   1.5   35  102-138     7-41  (63)
159 PF11181 YflT:  Heat induced st  22.5 2.1E+02  0.0045   23.2   5.1   47  399-445     3-53  (103)
160 cd07049 BMC_EutL_repeat1 ethan  21.3 1.9E+02  0.0042   23.7   4.5   32   86-117    67-98  (103)
161 smart00398 HMG high mobility g  20.9 1.5E+02  0.0033   21.4   3.7   29  120-148    39-67  (70)

No 1  
>KOG2450 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=100.00  E-value=1.5e-100  Score=762.67  Aligned_cols=426  Identities=59%  Similarity=0.969  Sum_probs=416.6

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      ++||||+|+++.++++++++||+||+++++|++++.+|++.||++||+||+.+.|++++..+|.++|+++++++++++++
T Consensus        22 ~lfin~e~~~~~s~kt~~~~nP~tg~~i~~v~~~~~~dVd~aV~aAr~Af~~~~W~~~~~~~R~~~L~~~Adlie~~~~~  101 (501)
T KOG2450|consen   22 GLFINGEFVDSVSGKTFPVVNPATGEVIAKVAEATEEDVDEAVKAARSAFKLVDWAKRDAAERGRLLRKLADLIEQDADV  101 (501)
T ss_pred             heeecCeeecccCCceeeeecCCCCCeEEEeccccHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHhhhHH
Confidence            89999999999999999999999999999999999999999999999999966799999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------  207 (493)
                      |+.+.+++.|||+.+++..++..+++.+|||++|++++++..++.+..+..|+.++|+|||                   
T Consensus       102 lA~~E~~d~GKp~~~a~~~Dl~~~~~~~ry~ag~ad~~~~~~~~~~~~~~~yt~~eP~GV~G~I~pWN~Pllm~awKlaP  181 (501)
T KOG2450|consen  102 LAALEVLDNGKPYPEALVSDLPPAIDCFRYYAGWADKIHGSTIPTDGEFFAYTRREPIGVCGQIIPWNFPLLMQAWKLAP  181 (501)
T ss_pred             HhhhcccccCCcchhhhhcCchhhhhHHHhhccchhhcccccCCCCCceEEEecCCcceeeeEeccCchHHHHHHHhhhh
Confidence            9999999999999999967999999999999999999999888888889999999999999                   


Q ss_pred             ----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcC
Q 011130          208 ----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSN  253 (493)
Q Consensus       208 ----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~  253 (493)
                                                        ||+|+|+|.|.+++++|.+||+|++|+||||+.+|+.|++.++.++
T Consensus       182 ALa~GNtvV~Kpae~tplsal~~~~l~~eaG~P~GVvNii~G~G~~aG~al~sH~dv~kiaFTGSt~~G~~I~~aaa~~n  261 (501)
T KOG2450|consen  182 ALAAGNTVVLKPAEQTPLTALYLASLCKEAGFPPGVVNIVPGSGTTAGAALASHPDVDKVAFTGSTPVGKEIMEAAAESN  261 (501)
T ss_pred             HHhhCcEEEecCCCCCCchHHHHHHHhHHhcCCcceEEEccCCCchHHHHHhhCCCCceEEecCCCcchhHHhhhhhhcC
Confidence                                              9999999999999999999999999999999999999999999878


Q ss_pred             CCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhh-cccCCCCCCCCc
Q 011130          254 LKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMK-RVVGDPFKGGIQ  332 (493)
Q Consensus       254 ~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~-~~vg~p~~~~~~  332 (493)
                      +||++||||||+|.||++|||+|.|++.++.+.|+|+||+|++.+|+|||+++||+|+++++++..+ +++|||+++.+.
T Consensus       262 ~K~vtLElGGKsp~Ivf~Dadld~av~~~~~~iF~nqGq~C~a~sR~~Vqe~iydefv~~~v~~a~~~~kvGdP~~~~~~  341 (501)
T KOG2450|consen  262 LKPVTLELGGKSPIIVFDDADLDLAVENAAFGIFFNQGQCCTAGSRVFVQESIYDEFVEKFVAAAKKKLKVGDPFDEGTE  341 (501)
T ss_pred             CceeccccCCCCcceEecccchHHHHHHHHHHhhcccccccccCceeEEechHHHHHHHHHHHHHhcccccCCCCCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999966 999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHH
Q 011130          333 QGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRS  412 (493)
Q Consensus       333 ~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~  412 (493)
                      +||++++.|+++++.||+.++++|+++++||.+.+++||||.|||+.++.++|.+++||+||||++|++|++.||+|+++
T Consensus       342 qG~~i~~~q~ekI~~yi~~~k~eGa~l~~gG~~~g~~Gyfi~Ptv~~~v~~~m~i~~EEIFGPVv~v~~F~t~eE~i~~A  421 (501)
T KOG2450|consen  342 QGPQISKTQYEKILGYIESGKKEGATLLCGGVRLGDKGYFIKPTVFTNVTDDMRIAKEEIFGPVVVVLKFKTEEEVIERA  421 (501)
T ss_pred             cccccCHHHHHHHHHHHHHHHhcCCEEEecCcccCCCceEECCeeccCCChhhhhhHhhccCceEEEEecCcHHHHHHHh
Confidence            99999999999999999999999999999998877899999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeCCCCCC
Q 011130          413 NASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTALKNPAW  492 (493)
Q Consensus       413 n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~~~~~~  492 (493)
                      |++.|||+++|||+|.+++++++.++++|+||||++..+++.+||||+|+||+||+.|.+++.+|++.|+|+++++.+.|
T Consensus       422 N~t~yGLAa~V~t~dl~~a~~va~~l~aGtVwiN~y~~~~~~~PfgG~K~SG~GRE~g~~~l~~ytevKtv~v~~~~~~~  501 (501)
T KOG2450|consen  422 NNTTYGLAAGVFTKDLDKAHRVANALQAGTVWINCYNVFDAQVPFGGFKMSGIGRELGEYGLEAYTEVKTVTVKLPQKNS  501 (501)
T ss_pred             cCCcccceeeEeccChHHHHHHHHHhcCceEEEeccccccccCCccccccccCCccccHHHHhhcceeeEEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988765


No 2  
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=100.00  E-value=3.7e-99  Score=800.50  Aligned_cols=484  Identities=82%  Similarity=1.303  Sum_probs=457.3

Q ss_pred             CCcccccccccccccCCCC-ccccCCCCchhhHHhHHhhhhcccccccccccccCCCCCCCCCCccccceeCCEeeeCCC
Q 011130            1 MAARRIPLLLSRSFTSSSP-TLFSRGRDSSLCRAAAAAAASCGYSTASSAAAAAEDPITPPVKVDYTQLLINGQFVDSAS   79 (493)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~~~~~~~   79 (493)
                      ||+||+++||+|+++++++ ++++.+.++..++++.      +|+|   +.++.++.|++|+.++++++||||+|+.+.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~I~G~~~~~~~   71 (538)
T PLN02466          1 MAARRISSLLSRSLSASSSALLRSRGRNGGRGRGIR------RFST---AAAAVEEPITPPVQVSYTQLLINGQFVDAAS   71 (538)
T ss_pred             CCchHHHHHHHHHhhcccHHHhhhccccCCCCcccc------cccc---ccccccCcCCCccccccccceECCEEecCCC
Confidence            8999999999999977765 6777888888899999      9999   6577999999999999999999999998777


Q ss_pred             CCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh
Q 011130           80 GKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPF  159 (493)
Q Consensus        80 ~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~  159 (493)
                      +++++++||+||+++++++.++.+|+++||++|++||+.+.|++++.++|.++|++++++|+++.++|++++++|+|||+
T Consensus        72 ~~~~~v~~P~tg~~i~~v~~~~~~dv~~Av~aA~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~GK~~  151 (538)
T PLN02466         72 GKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSRILLRFADLLEKHNDELAALETWDNGKPY  151 (538)
T ss_pred             CCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHcCcCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH
Confidence            89999999999999999999999999999999999998556999999999999999999999999999999999999999


Q ss_pred             hhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE--------------------------------
Q 011130          160 EQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA--------------------------------  207 (493)
Q Consensus       160 ~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv--------------------------------  207 (493)
                      .++...|+..+++.++||+.|.++..+...+.......++.++|+|||                                
T Consensus       152 ~~a~~~Ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~l~~~~i~pALaaGN~VVlKPs  231 (538)
T PLN02466        152 EQSAKAELPMFARLFRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTA  231 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCceEEEEEecceEEEEECCCchHHHHHHHHHhHHHHcCCEEEeECC
Confidence            998656999999999999999988877655544444668999999999                                


Q ss_pred             ---------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCc
Q 011130          208 ---------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSP  266 (493)
Q Consensus       208 ---------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p  266 (493)
                                           |++|+|++.+.++++.|+.||+||+|+||||+++|+.|++.+++.++||+++|||||||
T Consensus       232 ~~tp~~~~~l~~ll~eaGlP~gvv~vv~g~~~~~~~~L~~~~~vd~V~FTGS~~~G~~v~~~aa~~~l~pv~lElGGknp  311 (538)
T PLN02466        232 EQTPLSALYAAKLLHEAGLPPGVLNVVSGFGPTAGAALASHMDVDKLAFTGSTDTGKIVLELAAKSNLKPVTLELGGKSP  311 (538)
T ss_pred             CCCcHHHHHHHHHHHhcCCCcccEEEEecCchhHHHHHhcCCCcCEEEEECCHHHHHHHHHHHHhcCCCcEEEEcCCCCe
Confidence                                 99999999777889999999999999999999999999999884478999999999999


Q ss_pred             eEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHH
Q 011130          267 FIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKIL  346 (493)
Q Consensus       267 ~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~  346 (493)
                      +||++|||++.|++.+++++|+++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||+++..+++++.
T Consensus       312 ~iV~~dADl~~Aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~~v~  391 (538)
T PLN02466        312 FIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRVVGDPFKKGVEQGPQIDSEQFEKIL  391 (538)
T ss_pred             EEEcCCCCHHHHHHHHHHHHHhhcCCCcCcCcEEEEcHHHHHHHHHHHHHHHHhccCCCCccCCCCCccCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecC
Q 011130          347 KYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTH  426 (493)
Q Consensus       347 ~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~  426 (493)
                      ++|++++++|+++++||...+..|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||+++|||+
T Consensus       392 ~~v~~a~~~Ga~v~~gg~~~~~~g~~i~Ptvl~~v~~d~~i~~eE~FGPVl~v~~~~d~deAi~~aN~~~~GL~a~VfT~  471 (538)
T PLN02466        392 RYIKSGVESGATLECGGDRFGSKGYYIQPTVFSNVQDDMLIAQDEIFGPVQSILKFKDLDEVIRRANNTRYGLAAGVFTQ  471 (538)
T ss_pred             HHHHHHHHCCCEEEecCCcCCCCceEEEEEEEecCCCCCchhcCCccCcEEEEEEeCCHHHHHHHHhCCCCCceEEEEcC
Confidence            99999999999999999865557899999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeCCCCCCC
Q 011130          427 NLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTALKNPAWL  493 (493)
Q Consensus       427 d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~~~~~~~  493 (493)
                      |.+.+.++++++++|+||||+++..++.+||||+|+||+|+++|.+++++|++.|++++..++|+|+
T Consensus       472 d~~~a~~~~~~l~aG~v~IN~~~~~~~~~PfGG~k~SG~G~~~G~~gl~~ft~~k~v~~~~~~~~~~  538 (538)
T PLN02466        472 NLDTANTLSRALRVGTVWVNCFDVFDAAIPFGGYKMSGIGREKGIYSLNNYLQVKAVVTPLKNPAWL  538 (538)
T ss_pred             CHHHHHHHHHhCCeeeEEECCCCCCCCCCCcCCCCcCccCcccHHHHHHHhcceEEEEEeCCCCCCC
Confidence            9999999999999999999998778888999999999999999999999999999999999999997


No 3  
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=100.00  E-value=3.6e-92  Score=672.04  Aligned_cols=418  Identities=37%  Similarity=0.630  Sum_probs=400.3

Q ss_pred             cccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhH
Q 011130           65 YTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHN  144 (493)
Q Consensus        65 ~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~  144 (493)
                      +.+.||+|+|+++.++++|+|.||++||+|+.|++++.+|.+.||++|.+||+  .|+.++..+|.++|+++.++|.+|.
T Consensus        23 ~~~~~igGkWv~s~~~~tF~V~nPa~geii~~V~~~~V~e~~kAI~aA~EaF~--s~~~~takeRs~lLrkwy~Li~en~  100 (503)
T KOG2451|consen   23 RAQSYIGGKWVDSPDNKTFEVDNPANGEIIGKVADMTVEEAEKAIDAAYEAFK--SYRNLTAKERSALLRKWYELIMENK  100 (503)
T ss_pred             chhccccceeeccCCCCeeeccCCCccchhhcccCCcHHHHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHhch
Confidence            45789999999998899999999999999999999999999999999999999  8999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE----------------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA----------------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv----------------  207 (493)
                      |+|++++++|+|||+.++.. ||.-+..+++||++.++++.+...+.. ......+.++|+||+                
T Consensus       101 ddLa~iiTlE~GKpL~eA~g-Ev~y~a~f~eWyAeEA~RvyGdii~s~~~~rr~i~ikQPvGV~alItPWNFP~AMItRK  179 (503)
T KOG2451|consen  101 DDLATIITLENGKPLGEAKG-EVAYSAAFFEWYAEEARRVYGDIIPSLNPNRRLIVIKQPVGVVALITPWNFPAAMITRK  179 (503)
T ss_pred             HHHHHHHhhhcCCchhhccc-eeehhHHHHHHHHHHhhhhhccccCCCCCCceEEEEeccceeEEEecCcCChHHHHHhH
Confidence            99999999999999999985 999999999999999999999987644 456788999999998                


Q ss_pred             -------------------------------------eEEEeeeCC---ccchhhhhhccccccEEEEecCcHHHHHHHH
Q 011130          208 -------------------------------------GVLNIVSGY---GPTAGAALASHMEVDKLAFTGSTTTGKIVLQ  247 (493)
Q Consensus       208 -------------------------------------gvv~vv~~~---~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~  247 (493)
                                                           |++|+|++.   ..+.+..|+.+|+|++|+||||+.+||.++.
T Consensus       180 ~gAALAaGCTvVvkPs~~TPlsaLala~lA~~AGiP~Gv~NVit~~~~~a~eig~~lctsp~VrkisFTGST~VGKiL~~  259 (503)
T KOG2451|consen  180 AGAALAAGCTVVVKPSEDTPLSALALAKLAEEAGIPAGVLNVITADASNAAEIGKELCTSPDVRKISFTGSTNVGKILMA  259 (503)
T ss_pred             HHHHHhcCceEEEccCCCCchHHHHHHHHHHHcCCCCcceEEEecCCCChHHHHHHhhcCCceeeEEeeccchHHHHHHH
Confidence                                                 999999963   4478999999999999999999999999999


Q ss_pred             HHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCC
Q 011130          248 LAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPF  327 (493)
Q Consensus       248 ~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~  327 (493)
                      +++. +.|++.+|||||.|+||++|||+|+|++.....+|.++||.|.+..|+|||++|||+|+++|.++++++++||-+
T Consensus       260 qsas-tvKkvslELGGNAPfIVFddadld~Av~g~mA~KFr~~GQtCVcaNR~yVh~~iyD~Fv~~l~e~vkkl~vGdG~  338 (503)
T KOG2451|consen  260 QSAS-TVKKVSLELGGNAPFIVFDDADLDQAVEGAMACKFRNSGQTCVCANRVYVHDSIYDKFVSKLAEAVKKLKVGDGL  338 (503)
T ss_pred             hhhh-hhhheehhhcCCCceEEecCcCHHHHHHHHHHhhhccCCceeEecceeEEehhhHHHHHHHHHHHHHheeccCCC
Confidence            9998 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCC-CCceeeceEEecCCCCccccccccccceEEEEEeCCHH
Q 011130          328 KGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGA-KGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLD  406 (493)
Q Consensus       328 ~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~-~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~  406 (493)
                      |+++.+||||++++++++..+++||+.+|+++++||+...+ .++|++||||.+++++|-+..||+|||+.+|++|+|.|
T Consensus       339 ~~~tt~GpLIne~av~Kve~~v~DAvsKga~ii~GGk~~~~lg~~fyePTvl~~V~~~m~~s~eEtFGPla~v~kFdtee  418 (503)
T KOG2451|consen  339 DPGTTQGPLINEKAVEKVEKHVEDAVSKGAKIILGGKERSELGPTFYEPTVLSNVTQNMLVSSEETFGPLASVFKFDTEE  418 (503)
T ss_pred             CCCCccCCccCHHHHHHHHHHHHHHHhcCCeEEeCCeEccccCCccccceEeecCCccceeeccccccccceeeeeCCHH
Confidence            99999999999999999999999999999999999995544 45899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          407 EVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       407 eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      |+|+++|++..||++|+||+|.++..+++++|++|.|.+|.--..++..||||+|+||+||+++.+++++|+..|.+++.
T Consensus       419 Evi~~ANdt~vGLAgYvfs~~~s~~~rVae~LEvGmVGvNeglis~~~~pFGGVKeSG~GREgskyGidey~~ik~icig  498 (503)
T KOG2451|consen  419 EVIEWANDTRVGLAGYVFSNNLSRLFRVAEALEVGMVGVNEGLISDAEAPFGGVKESGFGREGSKYGIDEYLVIKYICIG  498 (503)
T ss_pred             HHHHHhccCccceeeEEeccCHHHHHHHHHHHhcceeecccceecccccCcCCccccccCccccccchhhhhhhheeeec
Confidence            99999999999999999999999999999999999999998766788999999999999999999999999999998875


No 4  
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=100.00  E-value=2e-89  Score=723.25  Aligned_cols=433  Identities=56%  Similarity=0.974  Sum_probs=407.0

Q ss_pred             CCCccccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHH
Q 011130           61 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLL  140 (493)
Q Consensus        61 ~~~~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l  140 (493)
                      +.+...++||||+|+.+.++.+++++||+||+++++++.++.+|++++|++|++||+.+.|+++|.++|.++|++++++|
T Consensus        16 ~~~~~~~~~I~G~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~~W~~~~~~~R~~~L~~~a~~l   95 (501)
T PLN02766         16 PEIKFTKLFINGEFVDAASGKTFETRDPRTGEVIARIAEGDKEDVDLAVKAAREAFDHGPWPRMSGFERGRIMMKFADLI   95 (501)
T ss_pred             CCcccccceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHH
Confidence            44566788999999987677899999999999999999999999999999999999755699999999999999999999


Q ss_pred             HHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------
Q 011130          141 ERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------  207 (493)
Q Consensus       141 ~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------  207 (493)
                      +++.++|++++++|+|||+.++...|+..+++.++|++..++++.+...+.......++.++|+|||             
T Consensus        96 ~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~  175 (501)
T PLN02766         96 EEHIEELAALDTIDAGKLFALGKAVDIPAAAGLLRYYAGAADKIHGETLKMSRQLQGYTLKEPIGVVGHIIPWNFPSTMF  175 (501)
T ss_pred             HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCCCceEEEEeccceEEEEECCCCChHHHH
Confidence            9999999999999999999888755999999999999998887766544433344567889999999             


Q ss_pred             ----------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHH
Q 011130          208 ----------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQ  247 (493)
Q Consensus       208 ----------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~  247 (493)
                                                              |++|+|++++.++++.|+.||+||+|+||||+.+|+.|++
T Consensus       176 ~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~p~v~~V~FTGS~~~G~~i~~  255 (501)
T PLN02766        176 FMKVAPALAAGCTMVVKPAEQTPLSALFYAHLAKLAGVPDGVINVVTGFGPTAGAAIASHMDVDKVSFTGSTEVGRKIMQ  255 (501)
T ss_pred             HHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHhcCCCcCcEEEEecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHH
Confidence                                                    8999999987788999999999999999999999999999


Q ss_pred             HHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCC
Q 011130          248 LAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPF  327 (493)
Q Consensus       248 ~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~  327 (493)
                      .+++.++||+++|||||||+||++|||++.|++.+++++|.|+||.|++++|||||+++||+|+++|++++.++++|+|.
T Consensus       256 ~aa~~~l~~~~lElGGknp~iV~~dADl~~Aa~~i~~g~f~n~GQ~C~a~~ri~V~~si~d~f~~~l~~~~~~l~~G~p~  335 (501)
T PLN02766        256 AAATSNLKQVSLELGGKSPLLIFDDADVDMAVDLALLGIFYNKGEICVASSRVYVQEGIYDEFVKKLVEKAKDWVVGDPF  335 (501)
T ss_pred             HhhhcCCCeEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhhcCCCCCCCeEEEEcHHHHHHHHHHHHHHHHhccCCCCC
Confidence            98833899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHH
Q 011130          328 KGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDE  407 (493)
Q Consensus       328 ~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~e  407 (493)
                      ++++++||++++.+++++.++|++++++|+++++||......|+|++|||+.+++++|++++||+||||++|++|+|+||
T Consensus       336 ~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eE~FGPVl~v~~~~~~de  415 (501)
T PLN02766        336 DPRARQGPQVDKQQFEKILSYIEHGKREGATLLTGGKPCGDKGYYIEPTIFTDVTEDMKIAQDEIFGPVMSLMKFKTVEE  415 (501)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCCCCCeEEeeEEEecCCCCChhhhCCccCceEEEEEeCCHHH
Confidence            99999999999999999999999999999999999976545789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          408 VIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       408 ai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      ||+++|+++|||+++|||+|.+.+.++++++++|+|+||+....++.+||||+|+||+|+++|.+++++|++.|++++..
T Consensus       416 ai~~aN~~~~GL~a~Vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~G~~~l~~ft~~k~v~~~~  495 (501)
T PLN02766        416 AIKKANNTKYGLAAGIVTKDLDVANTVSRSIRAGTIWVNCYFAFDPDCPFGGYKMSGFGRDQGMDALDKYLQVKSVVTPL  495 (501)
T ss_pred             HHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcccCcCCccchHHHHHHHhceEEEEEec
Confidence            99999999999999999999999999999999999999997777788999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 011130          488 KNPAWL  493 (493)
Q Consensus       488 ~~~~~~  493 (493)
                      -+.||+
T Consensus       496 ~~~~~~  501 (501)
T PLN02766        496 YNSPWL  501 (501)
T ss_pred             cccccC
Confidence            999996


No 5  
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=100.00  E-value=4.9e-89  Score=716.40  Aligned_cols=417  Identities=35%  Similarity=0.628  Sum_probs=393.5

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      .++||||+|+.+.++.+++++||+||+++++++.++.+|+++|+++|++||+  .|+++|..+|.++|++++++|+++++
T Consensus        11 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~v~~~~~~~~~~v~~av~~A~~a~~--~W~~~~~~~R~~~L~~~a~~l~~~~~   88 (482)
T PRK11241         11 QQALINGEWLDANNGEVIDVTNPANGDKLGSVPKMGADETRAAIDAANRALP--AWRALTAKERANILRRWFNLMMEHQD   88 (482)
T ss_pred             ccceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHH
Confidence            3689999999766788999999999999999999999999999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE-----------------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA-----------------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv-----------------  207 (493)
                      +|++++++|+|||+.+++. |+..+++.++|++.++++..+...+.. .+...++.++|+|||                 
T Consensus        89 ela~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~  167 (482)
T PRK11241         89 DLARLMTLEQGKPLAEAKG-EISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKA  167 (482)
T ss_pred             HHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEEeeceEEEEECCCcChHHHHHHHH
Confidence            9999999999999999985 999999999999998887765544332 234567899999999                 


Q ss_pred             ------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhh
Q 011130          208 ------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAK  251 (493)
Q Consensus       208 ------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~  251 (493)
                                                          |++|+|+|.+.++++.|+.||+|++|+||||+++|+.|++.+++
T Consensus       168 ~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aglP~gvv~vv~g~~~~~~~~l~~~~~v~~v~FTGS~~~G~~i~~~aa~  247 (482)
T PRK11241        168 GPALAAGCTMVLKPASQTPFSALALAELAIRAGIPAGVFNVVTGSAGAVGGELTSNPLVRKLSFTGSTEIGRQLMEQCAK  247 (482)
T ss_pred             HHHHHhCCEEEEECCCCChHHHHHHHHHHHHcCCCcccEEEEecCCchhHHHHhcCCCCCEEEEECcHHHHHHHHHHHHh
Confidence                                                99999999777889999999999999999999999999999998


Q ss_pred             cCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCC
Q 011130          252 SNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGI  331 (493)
Q Consensus       252 ~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~  331 (493)
                       ++||+++|||||||+||++|||+|.|++.+++++|.|+||.|++++|||||+++||+|+++|+++++++++|+|.++++
T Consensus       248 -~l~~~~lElGGknp~IV~~dADld~aa~~i~~~~f~~aGQ~C~a~~ri~V~~~i~d~f~~~l~~~~~~l~~G~p~~~~~  326 (482)
T PRK11241        248 -DIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLHIGDGLEKGV  326 (482)
T ss_pred             -cCCcEEEECCCCCeEEEcCCCCHHHHHHHHHHHHHhcCCCCCccCeEEEEeHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          332 QQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       332 ~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      ++||++++.+++++.++|++++++|+++++||...+..|+|++|||+.+++++|++++||+||||++|++|+|+||||++
T Consensus       327 ~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~GG~~~~~~g~f~~Ptvl~~v~~~~~i~~eE~FGPVl~v~~~~~~~eai~~  406 (482)
T PRK11241        327 TIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHELGGNFFQPTILVDVPANAKVAKEETFGPLAPLFRFKDEADVIAQ  406 (482)
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHhCCCEEEecCCCCCCCCeEEeeEEEECCCCCChhhhCcCcCCEEEEEEeCCHHHHHHH
Confidence            99999999999999999999999999999999754346899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      +|+++|||+++|||+|.+.++++++++++|+||||++....+.+||||+|+||+|+++|.+++++||+.|++++.
T Consensus       407 aN~s~~GL~a~Vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~g~~~ft~~k~v~~~  481 (482)
T PRK11241        407 ANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIG  481 (482)
T ss_pred             hhCCCCCceEEEEcCCHHHHHHHHHHcCccEEEECCCCCCCCCCCcCCccccccCcccHHHHHHHhhcceEEEEe
Confidence            999999999999999999999999999999999998766667789999999999999999999999999999765


No 6  
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=100.00  E-value=6.1e-88  Score=714.13  Aligned_cols=428  Identities=29%  Similarity=0.396  Sum_probs=396.2

Q ss_pred             CCCCCCCCCCccccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHH
Q 011130           54 EDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKII  133 (493)
Q Consensus        54 ~~~~~~~~~~~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL  133 (493)
                      +|+-.-+......++||||+|+.+.++++++++||+||++|++++.++.+|+++||++|++||+  .|+++|.++|.++|
T Consensus       102 ~~~~~~~~~~~~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~a~~~dv~~Av~aA~~A~~--~W~~~~~~eR~~iL  179 (604)
T PLN02419        102 PEQSTQPQMPPRVPNLIGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFP--LWRNTPITTRQRVM  179 (604)
T ss_pred             CCcccCcccccccceeECCEEecCCCCceEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HhccCCHHHHHHHH
Confidence            3444444455577899999999866678899999999999999999999999999999999999  99999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE-----
Q 011130          134 LRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA-----  207 (493)
Q Consensus       134 ~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv-----  207 (493)
                      ++++++|+++.++|++++++|+|||+.++.. |+..+++.++|++++++...+...+.. .+...++.++|+|||     
T Consensus       180 ~k~a~~L~~~~~ela~~~~~E~GKp~~ea~~-EV~~~i~~~~~~a~~a~~~~g~~~~~~~~~~~~~~~reP~GVV~~I~P  258 (604)
T PLN02419        180 LKFQELIRKNMDKLAMNITTEQGKTLKDSHG-DIFRGLEVVEHACGMATLQMGEYLPNVSNGVDTYSIREPLGVCAGICP  258 (604)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHhhCCcccccCCCccceEEecCccEEEEECC
Confidence            9999999999999999999999999999985 999999999999999887766544322 344567899999999     


Q ss_pred             ------------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCc
Q 011130          208 ------------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGST  239 (493)
Q Consensus       208 ------------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~  239 (493)
                                                                      |++|+|+|.+ +.++.|+.|++|++|+||||+
T Consensus       259 wNfPl~l~~~~iapALaAGNtVVlKPSe~tp~ta~~l~~l~~eAGlP~GvvnvV~G~~-~~~~~L~~~~~Vd~V~FTGSt  337 (604)
T PLN02419        259 FNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVILAELAMEAGLPDGVLNIVHGTN-DTVNAICDDEDIRAVSFVGSN  337 (604)
T ss_pred             CccHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCcCcceEEEEeCCh-HHHHHHHhCCCCCEEEEeCCh
Confidence                                                            9999999854 678889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHh
Q 011130          240 TTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAM  319 (493)
Q Consensus       240 ~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~  319 (493)
                      .+|+.|++.+++ ++||+++|||||||+||++|||+|.|++.+++++|.|+||.|++++|||||++ +|+|+++|+++++
T Consensus       338 ~vG~~I~~~Aa~-~lk~v~LELGGknp~IV~~DADld~Aa~~iv~g~f~naGQ~C~A~~Rv~V~~~-~d~f~e~l~~~~~  415 (604)
T PLN02419        338 TAGMHIYARAAA-KGKRIQSNMGAKNHGLVLPDANIDATLNALLAAGFGAAGQRCMALSTVVFVGD-AKSWEDKLVERAK  415 (604)
T ss_pred             HHHHHHHHHHhc-cCCcEEEecCCCCeEEEcCCCCHHHHHHHHHHHHHhhCCCCcCCCCEEEEeCc-HHHHHHHHHHHHH
Confidence            999999999988 89999999999999999999999999999999999999999999999999999 8999999999999


Q ss_pred             hcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCccc----CCCCceeeceEEecCCCCccccccccccc
Q 011130          320 KRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERL----GAKGYYIKPTVFTGVKDDMLIAKDEIFGP  395 (493)
Q Consensus       320 ~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~----~~~g~~~~Ptvl~~~~~~~~i~~~E~fgP  395 (493)
                      ++++|+|.|+++++||++++.+++++.++|++|+++|+++++||...    ...|+|++||||.+++++|.+++||+|||
T Consensus       416 ~l~vG~p~d~~t~~GPlis~~~~~~v~~~i~~A~~~GAkvl~GG~~~~~~~~~~G~f~~PTVL~~v~~d~~i~~eEiFGP  495 (604)
T PLN02419        416 ALKVTCGSEPDADLGPVISKQAKERICRLIQSGVDDGAKLLLDGRDIVVPGYEKGNFIGPTILSGVTPDMECYKEEIFGP  495 (604)
T ss_pred             HhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhcCCEEEeCCccccCCCCCCCeEEeeEEEeCCCCCCHHHcCCCcCC
Confidence            99999999999999999999999999999999999999999999752    13689999999999999999999999999


Q ss_pred             eEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcC-CCCCCCCccCCCCCCCC--CcchHH
Q 011130          396 VQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFD-VFDAAIPFGGYKQSGQG--REKGSY  472 (493)
Q Consensus       396 vl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~-~~~~~~pfGG~~~SG~G--~~~g~~  472 (493)
                      |++|++|+|+||||+++|+++|||+++|||+|.+.+.++++++++|.||||+.. ...+.+||||+|+||+|  +++|.+
T Consensus       496 Vl~V~~~~~~dEAI~laN~s~yGLaasVfT~d~~~a~~~a~~l~aG~V~IN~~~~~~~~~~PFGG~k~SG~G~~~~~G~~  575 (604)
T PLN02419        496 VLVCMQANSFDEAISIINKNKYGNGAAIFTSSGAAARKFQMDIEAGQIGINVPIPVPLPFFSFTGNKASFAGDLNFYGKA  575 (604)
T ss_pred             EEEEEecCCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCeeeEEEcCCCCCCCCCCCcCCcCcCCCCCCcccHHH
Confidence            999999999999999999999999999999999999999999999999999863 33477999999999999  799999


Q ss_pred             HHHhhhhceEEEEeC
Q 011130          473 SLSNYLQVKAVVTAL  487 (493)
Q Consensus       473 ~l~~~~~~k~v~~~~  487 (493)
                      ++++|++.|+|+++.
T Consensus       576 gl~~ft~~K~v~~~~  590 (604)
T PLN02419        576 GVDFFTQIKLVTQKQ  590 (604)
T ss_pred             HHHHhhCeEEEEEcc
Confidence            999999999998875


No 7  
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=100.00  E-value=5e-88  Score=703.32  Aligned_cols=413  Identities=48%  Similarity=0.777  Sum_probs=392.0

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      ++||||+|+...+  +++++||+||+++++++.++.+|+++|+++|+.+|+  .|+++++.+|.++|++++++|++|.++
T Consensus         2 ~~~i~g~~~~~~~--~~~~~nP~tg~~i~~~~~a~~~dv~~Av~aA~~a~~--~W~~~~~~eR~~iL~~~a~~l~~~~~e   77 (472)
T COG1012           2 KLLIDGEWVDGAS--TIEVINPATGEVIATVPAATAEDVDAAVAAARAAFE--AWSRLSAEERAAILRRIADLLEARAEE   77 (472)
T ss_pred             CccCCCeecCCCC--ceeeeCCCCCCEEeeecCCCHHHHHHHHHHHHHHHH--HhhhCCHHHHHHHHHHHHHHHHHhHHH
Confidence            6799999997644  899999999999999999999999999999999998  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------  207 (493)
                      |+.++++|+|||+.+++. |+..+++.++|++++++++.+...+.......+++++|+|||                   
T Consensus        78 la~~~~~e~Gk~i~ea~~-ei~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~k~ap  156 (472)
T COG1012          78 LAALITLETGKPISEARG-EIARAADFIRYYAEEARRLEGETIPTDKGSKALVRREPLGVVGAITPWNFPLALAAWKLAP  156 (472)
T ss_pred             HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCCccCCCCCcceEEEeecceEEEEECCCCCHHHHHHhhHHH
Confidence            999999999999999986 799999999999999998888765544467889999999999                   


Q ss_pred             ----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcC
Q 011130          208 ----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSN  253 (493)
Q Consensus       208 ----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~  253 (493)
                                                        |++|+|++.+.+.++.|+.||+|++|+||||+++|+.|++.+++ +
T Consensus       157 ALaaGntVV~KPse~tp~sa~~l~~~~~~aglP~Gv~nvv~g~~~~~g~~l~~~p~v~~i~FTGSt~~G~~i~~~Aa~-~  235 (472)
T COG1012         157 ALAAGNTVVLKPSEQTPLSALALAELAAEAGLPAGVLNVVTGGGAEVGDALVAHPDVDAISFTGSTAVGRAIAAAAAA-N  235 (472)
T ss_pred             HHHcCCEEEEECcccCcHHHHHHHHHHHHhCCCCCeEEEEeCCCchHHHHHhcCCCCCEEEEECChHHHHHHHHHHhh-c
Confidence                                              89999999877799999999999999999999999999999998 9


Q ss_pred             CCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhh-cccCCCCCCCCc
Q 011130          254 LKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMK-RVVGDPFKGGIQ  332 (493)
Q Consensus       254 ~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~-~~vg~p~~~~~~  332 (493)
                      +||+++|||||||+||++|||+|.|++.+++++|+|+||.|++++|+|||+++||+|+++|.++ ++ +++|||.|+.++
T Consensus       236 ~k~~~lELGGk~p~IV~~dAdl~~Av~~~~~g~f~n~GQ~C~a~~R~~V~~~v~d~f~~~l~~~-~~~l~~Gd~~d~~t~  314 (472)
T COG1012         236 LKPVTLELGGKSPAIVLEDADLDAAVDAAVFGAFFNAGQRCTAASRLIVHESVYDEFVERLVAR-AASLKVGDPLDPSTD  314 (472)
T ss_pred             CCcEEEECCCCCCeEECCCCCHHHHHHHHHHHHHhCCCCCccCCeEEEEehhhHHHHHHHHHHH-HhcCCCCCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999 65 999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHH
Q 011130          333 QGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRS  412 (493)
Q Consensus       333 ~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~  412 (493)
                      +||++++.+++++.++|++++++|+++++||+. .. |+|++|||+.++.++|++++||+||||++|++|+|+||||+++
T Consensus       315 ~Gpli~~~~~~~v~~~i~~a~~~G~~~~~Gg~~-~~-g~~~~PTv~~~v~~~~~i~~eEiFGPVl~v~~~~~~dEAi~lA  392 (472)
T COG1012         315 LGPLISEEQLDRVEGYIEDAVAEGARLLAGGKR-PG-GYFVEPTILEGVTPDMRIAREEIFGPVLPVIRFKDEEEAIELA  392 (472)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHcCCEEEeCCcC-CC-CeEECCEEEecCCCCChhhhccccCCceEEEEeCCHHHHHHHH
Confidence            999999999999999999999999999999983 33 9999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC--CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeCC
Q 011130          413 NASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV--FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTALK  488 (493)
Q Consensus       413 n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~--~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~~  488 (493)
                      |+++|||+++|||+|..++.++++++++|+||||++..  ..+.+||||+|+||+|+++|.+++++|++.|++.....
T Consensus       393 N~t~yGL~a~v~t~d~~~~~~~~~~l~aG~v~iN~~~~~~~~~~~PFGG~k~SG~G~~~g~~~~~~~~~~k~v~~~~~  470 (472)
T COG1012         393 NDTEYGLAAAIFTRDLARAFRVARRLEAGMVGINDYTGGADIAYLPFGGVKQSGLGREGGKYGLEEFTEVKTVTIKLG  470 (472)
T ss_pred             hCCCCCceEEEEcCCHHHHHHHHhcCCeeEEEECCCCCCCCCCCCCCCCcccccCCccchHHHHHHHhcceEEEEecC
Confidence            99999999999999999999999999999999998753  45779999999999999999999999999999988753


No 8  
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=100.00  E-value=7.7e-87  Score=701.09  Aligned_cols=421  Identities=45%  Similarity=0.803  Sum_probs=395.2

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      .++||||+|+.+.++++++++||+||+++++++.++.+|+++++++|++||+.+.|+++|..+|.++|++++++|+++.+
T Consensus         6 ~~~~I~g~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~   85 (486)
T cd07140           6 HQLFINGEFVDAEGGKTYNTINPTDGSVICKVSLATVEDVDRAVAAAKEAFENGEWGKMNARDRGRLMYRLADLMEEHQE   85 (486)
T ss_pred             cCceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHHHHHHHHhHH
Confidence            47899999998767889999999999999999999999999999999999974469999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC----CCceeEEEeeeeeeE--------------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD----GPYHVQTLHEPIGVA--------------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~----~~~~~~~~~~PlGVv--------------  207 (493)
                      +|++++++|+|||..++...|+..+++.++|++.++++..+...+..    .....++.++|+|||              
T Consensus        86 ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~r~P~GVv~~I~PwN~P~~~~~  165 (486)
T cd07140          86 ELATIESLDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGKTIPINQARPNRNLTLTKREPIGVCGIVIPWNYPLMMLA  165 (486)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCCCceEEEEeeccceEEEEcCCchHHHHHH
Confidence            99999999999999998656999999999999999988776544422    222467889999999              


Q ss_pred             ---------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHH
Q 011130          208 ---------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQL  248 (493)
Q Consensus       208 ---------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~  248 (493)
                                                             |++|+|++.+.++++.|+.||+|++|+||||+.+|+.|++.
T Consensus       166 ~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~~~v~~v~ftGs~~~g~~i~~~  245 (486)
T cd07140         166 WKMAACLAAGNTVVLKPAQVTPLTALKFAELTVKAGFPKGVINILPGSGSLVGQRLSDHPDVRKLGFTGSTPIGKHIMKS  245 (486)
T ss_pred             HHHHHHHHhCCEEEEECCccCcHHHHHHHHHHHHcCcCCCcEEEEecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHH
Confidence                                                   99999999777889999999999999999999999999999


Q ss_pred             HhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCC
Q 011130          249 AAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFK  328 (493)
Q Consensus       249 a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~  328 (493)
                      ++..++||+++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||+++||+|+++|++++.++++|+|.+
T Consensus       246 aa~~~l~~v~lElGGk~~~iV~~dadl~~a~~~i~~~~~~~~GQ~C~a~~rl~V~~~i~~~f~~~l~~~~~~l~~g~p~~  325 (486)
T cd07140         246 CAVSNLKKVSLELGGKSPLIIFADCDMDKAVRMGMSSVFFNKGENCIAAGRLFVEESIHDEFVRRVVEEVKKMKIGDPLD  325 (486)
T ss_pred             HHhcCCCeEEEEcCCCCceEECCCCCHHHHHHHHHHHHHhccCCCCCCCcEEEEcHHHHHHHHHHHHHHHHhCCccCCCC
Confidence            88447899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeC--CHH
Q 011130          329 GGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK--DLD  406 (493)
Q Consensus       329 ~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~--~~~  406 (493)
                      +++++||++++.+++++.++|++++++|+++++||...+..|+|++|||+.+++++|.+++||+||||++|++|+  |++
T Consensus       326 ~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~eE~FGPvl~v~~~~~~~~~  405 (486)
T cd07140         326 RSTDHGPQNHKAHLDKLVEYCERGVKEGATLVYGGKQVDRPGFFFEPTVFTDVEDHMFIAKEESFGPIMIISKFDDGDVD  405 (486)
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCeeECCEEEeCCCCCChhhhCCCCCCeEEEEEcCCCCHH
Confidence            999999999999999999999999999999999997655578999999999999999999999999999999998  699


Q ss_pred             HHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          407 EVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       407 eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      |||+++|+++|||+++|||+|.+.++++++++++|.||||+++...+.+||||+|+||+|+++|.+++++|++.|+|+++
T Consensus       406 eai~~aN~~~~gL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~G~~~l~~ft~~k~v~~~  485 (486)
T cd07140         406 GVLQRANDTEYGLASGVFTKDINKALYVSDKLEAGTVFVNTYNKTDVAAPFGGFKQSGFGKDLGEEALNEYLKTKTVTIE  485 (486)
T ss_pred             HHHHHHhCCCcCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcccCcCCCcchHHHHHHhhcEEEEEEe
Confidence            99999999999999999999999999999999999999999877778899999999999999999999999999999875


No 9  
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3),  which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=100.00  E-value=1.2e-86  Score=700.63  Aligned_cols=422  Identities=78%  Similarity=1.297  Sum_probs=397.4

Q ss_pred             CccccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 011130           63 VDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLER  142 (493)
Q Consensus        63 ~~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~  142 (493)
                      ++++++||||+|+.+.++.+++++||+||++|++++.++.+|+++++++|++||+.+.|+++|.++|.++|++++++|++
T Consensus         1 ~~~~~~~i~g~~~~~~~~~~~~v~~P~t~~~i~~v~~~~~~~v~~av~~A~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~   80 (476)
T cd07142           1 VKHTKLFINGQFVDAASGKTFPTIDPRNGEVIAHVAEGDAEDVDRAVKAARKAFDEGPWPRMTGYERSRILLRFADLLEK   80 (476)
T ss_pred             CCcccceECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHhcCCCchhhCCHHHHHHHHHHHHHHHHH
Confidence            35678999999997767789999999999999999999999999999999999974459999999999999999999999


Q ss_pred             hHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE---------------
Q 011130          143 HNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA---------------  207 (493)
Q Consensus       143 ~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv---------------  207 (493)
                      +.++|++++++|+|||..+++..|+..+++.++|++.++++..+...+...+...++.++|+|||               
T Consensus        81 ~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~  160 (476)
T cd07142          81 HADELAALETWDNGKPYEQARYAEVPLAARLFRYYAGWADKIHGMTLPADGPHHVYTLHEPIGVVGQIIPWNFPLLMFAW  160 (476)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCceEEEEEeceeeEEEECCCccHHHHHHH
Confidence            99999999999999999988756999999999999999888776655533345567899999999               


Q ss_pred             --------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHH
Q 011130          208 --------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLA  249 (493)
Q Consensus       208 --------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a  249 (493)
                                                            |++|+|++.+.++++.|+.||++|.|+||||+.+|+.|++.+
T Consensus       161 ~i~~ALaaGN~VV~KPs~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~~~v~~v~fTGs~~~G~~v~~~a  240 (476)
T cd07142         161 KVGPALACGNTIVLKPAEQTPLSALLAAKLAAEAGLPDGVLNIVTGFGPTAGAAIASHMDVDKVAFTGSTEVGKIIMQLA  240 (476)
T ss_pred             HHHHHHHcCCEEEEECCCcccHHHHHHHHHHHHcCcCcccEEEEeCCchhHHHHHhcCCCCCEEEEECcHHHHHHHHHHH
Confidence                                                  899999997777899999999999999999999999999998


Q ss_pred             hhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCC
Q 011130          250 AKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKG  329 (493)
Q Consensus       250 ~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~  329 (493)
                      ++.+++|+++|||||||+||++|||+|.|++.+++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++
T Consensus       241 a~~~~~~v~lElgGk~p~iV~~dADl~~Aa~~i~~~~f~~aGQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~G~p~~~  320 (476)
T cd07142         241 AKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALKRVVGDPFRK  320 (476)
T ss_pred             HHcCCCeEEEECCCCCeeEECCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEEEeHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            85478999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHH
Q 011130          330 GIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVI  409 (493)
Q Consensus       330 ~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai  409 (493)
                      ++++||++++.+++++.++|++++++|+++++||...+..|+|+.|||+.+++++|++++||+||||++|++|+|++|||
T Consensus       321 ~~~~Gpli~~~~~~~v~~~v~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~eE~FgPvl~v~~~~~~~eai  400 (476)
T cd07142         321 GVEQGPQVDKEQFEKILSYIEHGKEEGATLITGGDRIGSKGYYIQPTIFSDVKDDMKIARDEIFGPVQSILKFKTVDEVI  400 (476)
T ss_pred             CCcCCcCcCHHHHHHHHHHHHHHHhCCCEEEecCCcCCCCCeeEccEEeecCCCCChhhhCCccCceEEEEeeCCHHHHH
Confidence            99999999999999999999999999999999998655578999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          410 QRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       410 ~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +++|+++|||+++|||+|.+.+.++++++++|+|+||+++..++.+||||+|+||+|+++|.+++++||+.|+++
T Consensus       401 ~~~n~~~~gL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~ft~~k~v~  475 (476)
T cd07142         401 KRANNSKYGLAAGVFSKNIDTANTLSRALKAGTVWVNCYDVFDASIPFGGYKMSGIGREKGIYALNNYLQVKAVV  475 (476)
T ss_pred             HHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCccCcCCccchHHHHHHhhheeEEe
Confidence            999999999999999999999999999999999999998878888999999999999999999999999999885


No 10 
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=100.00  E-value=1.1e-86  Score=698.06  Aligned_cols=417  Identities=36%  Similarity=0.627  Sum_probs=391.5

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      .++||||+|+.+ ++.+++++||.||+++++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++.+
T Consensus         2 ~~~~i~g~~~~~-~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~a~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~   78 (472)
T TIGR03374         2 HKLLINGELVSG-EGEKQPVYNPATGEVILEIAEASAEQVDAAVRAADAAFA--EWGQTTPKARAECLLKLADVIEENAQ   78 (472)
T ss_pred             CCceECCEEecC-CCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHH
Confidence            478999999975 578899999999999999999999999999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCC-CCCceeEEEeeeeeeE-----------------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPA-DGPYHVQTLHEPIGVA-----------------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~-~~~~~~~~~~~PlGVv-----------------  207 (493)
                      +|++++++|+|||..++...|+..+++.++|++..++.+.+...+. ..+...++.++|+|||                 
T Consensus        79 ela~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~  158 (472)
T TIGR03374        79 VFAELESRNCGKPLHSVFNDEIPAIVDVFRFFAGAARCLSGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKL  158 (472)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccCCCceEEEEEecceEEEEECCCCchHHHHHHHH
Confidence            9999999999999998865699999999999998887766542221 1234567899999999                 


Q ss_pred             -----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhc
Q 011130          208 -----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKS  252 (493)
Q Consensus       208 -----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~  252 (493)
                                                         |++|+|++.+.++++.|+.||+||+|+||||+.+|+.|++.+++ 
T Consensus       159 ~~ALaaGN~VV~KPs~~tp~~~~~l~~l~~~~lP~gv~~~v~g~~~~~~~~L~~~~~v~~V~fTGS~~~G~~i~~~aa~-  237 (472)
T TIGR03374       159 APALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVVNILFGRGKTVGDPLTGHEKVRMVSLTGSIATGEHILSHTAP-  237 (472)
T ss_pred             HHHHhcCCEEEecCCCCCCHHHHHHHHHHHHhCCcCeEEEEecCchhHHHHHhcCCCcCEEEEECCHHHHHHHHHHHhh-
Confidence                                               99999999777889999999999999999999999999999998 


Q ss_pred             CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCc
Q 011130          253 NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQ  332 (493)
Q Consensus       253 ~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~  332 (493)
                      ++||+++|||||||+||++|||+|.|++.+++++|+|+||.|++++|||||++++|+|+++|++++.++++|+|.+++++
T Consensus       238 ~~~~~~lElGGk~p~iV~~dadl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~l~~G~p~~~~~~  317 (472)
T TIGR03374       238 SIKRTHMELGGKAPVIVFDDADIDAVVEGVRTFGFYNAGQDCTAACRIYAQRGIYDTLVEKLGAAVATLKSGAPDDESTE  317 (472)
T ss_pred             cccceEEecCCCCeeEECCCCCHHHHHHHHHHHHHhhcCCccccCCEEEEcHHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHHhCC-CEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          333 QGPQIDSEQFEKILKYIRSGVDGG-AKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       333 ~gpli~~~~~~~~~~~i~~a~~~g-a~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      +||+++..+++++.++|++++++| +++++||......|+|+.|||+.+++++|++++||+||||++|++|+|.||||++
T Consensus       318 ~Gpli~~~~~~~v~~~i~~a~~~G~a~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eE~FGPvl~v~~~~~~~eai~~  397 (472)
T TIGR03374       318 LGPLSSLAHLERVMKAVEEAKALGHIKVITGGEKRKGNGYYFAPTLLAGAKQDDAIVQKEVFGPVVSITSFDDEEQVVNW  397 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCccCCCCCeEEeeEEEeCCCCCChhhhCCccCceEEEEEECCHHHHHHH
Confidence            999999999999999999999999 7999999765446899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      +|+++|||+++|||+|.+++.++++++++|+||||+.....+.+||||+|+||+|+++|.+++++|++.|+++.+
T Consensus       398 an~~~~gL~a~vft~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~~t~~k~i~~~  472 (472)
T TIGR03374       398 ANDSQYGLASSVWTKDVGRAHRLSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVRHIMVK  472 (472)
T ss_pred             HhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCccCccCccchHHHHHHhhceEEEEEC
Confidence            999999999999999999999999999999999999777778899999999999999999999999999998753


No 11 
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=100.00  E-value=4.3e-86  Score=696.22  Aligned_cols=418  Identities=42%  Similarity=0.756  Sum_probs=396.3

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      ++||||+|+.+.++.+++++||+||+++++++.++.+|++++|++|++||+  .|+++|.++|.++|++++++|++|.++
T Consensus         2 ~~~I~g~~~~~~~~~~~~v~~P~t~~~~~~~~~~~~~dv~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~   79 (480)
T cd07559           2 DNFINGEWVAPSKGEYFDNYNPVNGKVLCEIPRSTAEDVDLAVDAAHEAFK--TWGKTSVAERANILNKIADRIEENLEL   79 (480)
T ss_pred             CccCCCEEecCCCCCeEEeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHH
Confidence            579999999877788999999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------  207 (493)
                      |++++++|+|||+.++...|+..+++.+++++++++...+...+...+...++.++|+|||                   
T Consensus        80 la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~i~~  159 (480)
T cd07559          80 LAVAETLDNGKPIRETLAADIPLAIDHFRYFAGVIRAQEGSLSEIDEDTLSYHFHEPLGVVGQIIPWNFPLLMAAWKLAP  159 (480)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCceeEEEEeccceEEEECCCchHHHHHHHHHHH
Confidence            9999999999999998766999999999999998887766544444445678899999999                   


Q ss_pred             ---------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCC
Q 011130          208 ---------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNL  254 (493)
Q Consensus       208 ---------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~  254 (493)
                                                       |++|+|++.+.++++.|+.||+|++|+||||+.+|+.|++.+++ ++
T Consensus       160 ALaaGN~VV~KPs~~tp~~~~~l~~l~~~~lP~gvv~~v~g~~~~~~~~L~~~~~v~~V~fTGs~~~g~~i~~~aa~-~~  238 (480)
T cd07559         160 ALAAGNTVVLKPASQTPLSILVLMELIGDLLPKGVVNVVTGFGSEAGKPLASHPRIAKLAFTGSTTVGRLIMQYAAE-NL  238 (480)
T ss_pred             HHHcCCEEEEECchhhhHHHHHHHHHHHHhCCcCeEEEEecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhc-cC
Confidence                                             99999999777889999999999999999999999999999988 89


Q ss_pred             CceeEecCCCCceEEccCC-----CHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCC
Q 011130          255 KPVTLELGGKSPFIVCEDA-----DVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKG  329 (493)
Q Consensus       255 ~pv~lelgG~~p~iV~~da-----Dl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~  329 (493)
                      ||+++|||||||+||++||     |++.|++.+++++|+++||.|++++|||||++++|+|+++|+++++++++|+|.|+
T Consensus       239 ~p~~lElGGk~p~iV~~dA~~~~~Dl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~~G~p~~~  318 (480)
T cd07559         239 IPVTLELGGKSPNIFFDDAMDADDDFDDKAEEGQLGFAFNQGEVCTCPSRALVQESIYDEFIERAVERFEAIKVGNPLDP  318 (480)
T ss_pred             CcEEeccCCCCeEEEcCCccccccCHHHHHHHHHHHHHhhCCCCCCCCeEEEEcHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999     99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCH
Q 011130          330 GIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDL  405 (493)
Q Consensus       330 ~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~  405 (493)
                      ++++||++++.+++++.++|++++++|+++++||....    ..|+|++|||+.+++++|.++++|+||||++|++|+|+
T Consensus       319 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~  398 (480)
T cd07559         319 ETMMGAQVSKDQLEKILSYVDIGKEEGAEVLTGGERLTLGGLDKGYFYEPTLIKGGNNDMRIFQEEIFGPVLAVITFKDE  398 (480)
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCccccCCCCcEECeEEEeCCCCCCcHHhcCCcCceEEEEeeCCH
Confidence            99999999999999999999999999999999997643    46899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          406 DEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       406 ~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      +|+|+++|+++|||+++|||+|.+++.++++++++|+||||+++..++.+||||+|+||+|+++|.+++++||+.|++++
T Consensus       399 ~eai~~~n~~~~gL~~~v~t~d~~~a~~~a~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~~~~~k~v~~  478 (480)
T cd07559         399 EEAIAIANDTEYGLGGGVWTRDINRALRVARGIQTGRVWVNCYHQYPAHAPFGGYKKSGIGRETHKMMLDHYQQTKNILV  478 (480)
T ss_pred             HHHHHHHhCCCCCCeEEEECCCHHHHHHHHHhcCcceEEECCCCCCCCCCCcCCCccCcCCccChHHHHHHhhceEEEEE
Confidence            99999999999999999999999999999999999999999887777889999999999999999999999999999987


Q ss_pred             eC
Q 011130          486 AL  487 (493)
Q Consensus       486 ~~  487 (493)
                      ++
T Consensus       479 ~~  480 (480)
T cd07559         479 SY  480 (480)
T ss_pred             eC
Confidence            54


No 12 
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=100.00  E-value=5.4e-86  Score=694.01  Aligned_cols=418  Identities=44%  Similarity=0.763  Sum_probs=394.4

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      ++||||+|+.+.++++++++||+||+++++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++.++
T Consensus         2 ~~~i~g~~~~~~~~~~~~~~nP~t~~~i~~~~~~~~~dv~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~   79 (475)
T cd07117           2 GLFINGEWVKGSSGETIDSYNPANGETLSEITDATDADVDRAVKAAQEAFK--TWRKTTVAERANILNKIADIIDENKEL   79 (475)
T ss_pred             CceECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHCHHH
Confidence            579999999876778999999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------  207 (493)
                      |++++++|+|||+.+++..|+..+++.++|++.++++..+...+...+...++.++|+|||                   
T Consensus        80 la~~~~~e~Gk~~~~a~~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~Pl~~~~~~i~~  159 (475)
T cd07117          80 LAMVETLDNGKPIRETRAVDIPLAADHFRYFAGVIRAEEGSANMIDEDTLSIVLREPIGVVGQIIPWNFPFLMAAWKLAP  159 (475)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCceeEEEEeecceEEEECCCccHHHHHHHHHHH
Confidence            9999999999999998756999999999999988877666544433344568899999999                   


Q ss_pred             ---------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCC
Q 011130          208 ---------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNL  254 (493)
Q Consensus       208 ---------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~  254 (493)
                                                       |++|+|++.+.++++.|+.||++|.|+||||+.+|+.|++.+++ ++
T Consensus       160 AL~aGN~VvlKPs~~~p~~~~~l~~~~~~~lP~g~~~~v~g~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~-~~  238 (475)
T cd07117         160 ALAAGNTVVIKPSSTTSLSLLELAKIIQDVLPKGVVNIVTGKGSKSGEYLLNHPGLDKLAFTGSTEVGRDVAIAAAK-KL  238 (475)
T ss_pred             HHHcCCEEEEECCccCcHHHHHHHHHHHHhCCcCcEEEEecCcHHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhc-cC
Confidence                                             89999998777889999999999999999999999999999988 89


Q ss_pred             CceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccc
Q 011130          255 KPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQG  334 (493)
Q Consensus       255 ~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~g  334 (493)
                      +|+++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||++++|+|+++|++++.++++|+|.++++++|
T Consensus       239 ~~~~lElgGk~p~iV~~dADl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~~g~p~~~~~~~g  318 (475)
T cd07117         239 IPATLELGGKSANIIFDDANWDKALEGAQLGILFNQGQVCCAGSRIFVQEGIYDEFVAKLKEKFENVKVGNPLDPDTQMG  318 (475)
T ss_pred             CcEEEeCCCCCeEEECCCCChHHHHHHHHHHHhhccCCCCCCCeEEEEeHHHHHHHHHHHHHHHHhccCCCCCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHH
Q 011130          335 PQIDSEQFEKILKYIRSGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQ  410 (493)
Q Consensus       335 pli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~  410 (493)
                      |++++.+++++.++|++++++|+++++||....    ..|+|++|||+.+++++|+++++|+||||++|++|+|.||||+
T Consensus       319 pli~~~~~~~v~~~v~~a~~~Ga~v~~gg~~~~~~~~~~g~~~~Ptvl~~~~~~~~i~~eE~FgPvl~v~~~~~~~eai~  398 (475)
T cd07117         319 AQVNKDQLDKILSYVDIAKEEGAKILTGGHRLTENGLDKGFFIEPTLIVNVTNDMRVAQEEIFGPVATVIKFKTEDEVID  398 (475)
T ss_pred             CcCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCccccCCCCeEEeeEEeecCCCCChhhhCCCcCCeEEEEEECCHHHHHH
Confidence            999999999999999999999999999997543    3689999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          411 RSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       411 ~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      ++|+++|||+++|||+|.+.+.++++++++|+|+||+++..++.+||||+|+||+|+++|.+++++||+.|++++.+
T Consensus       399 ~~n~~~~gL~~~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~ft~~k~v~~~~  475 (475)
T cd07117         399 MANDSEYGLGGGVFTKDINRALRVARAVETGRVWVNTYNQIPAGAPFGGYKKSGIGRETHKSMLDAYTQMKNIYIDL  475 (475)
T ss_pred             HHhCCCcCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCccCcCCCCchHHHHHHHhCeEEEEEeC
Confidence            99999999999999999999999999999999999998777788999999999999999999999999999998753


No 13 
>PLN02278 succinic semialdehyde dehydrogenase
Probab=100.00  E-value=1.3e-85  Score=694.40  Aligned_cols=417  Identities=40%  Similarity=0.650  Sum_probs=393.1

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      .++||||+|+.+.++.+++++||+||+++++++.++.+|++++|++|++||+  .|+++|.++|.++|++++++|+++.+
T Consensus        25 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~W~~~~~~~R~~~L~~~a~~l~~~~~  102 (498)
T PLN02278         25 TQGLIGGKWTDAYDGKTFPVYNPATGEVIANVPCMGRAETNDAIASAHDAFP--SWSKLTASERSKILRRWYDLIIANKE  102 (498)
T ss_pred             ccceECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHH
Confidence            4789999999766678999999999999999999999999999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE-----------------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA-----------------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv-----------------  207 (493)
                      +|++++++|+|||..++.. |+..+++.++|++..+++..+...+.. .+...++.++|+|||                 
T Consensus       103 ~la~~~~~e~Gk~~~~a~~-Ev~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~P~GvV~~I~PwN~P~~~~~~~i  181 (498)
T PLN02278        103 DLAQLMTLEQGKPLKEAIG-EVAYGASFLEYFAEEAKRVYGDIIPSPFPDRRLLVLKQPVGVVGAITPWNFPLAMITRKV  181 (498)
T ss_pred             HHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEeecccEEEEECCCccHHHHHHHHH
Confidence            9999999999999999985 999999999999999887766544432 234567889999998                 


Q ss_pred             ------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhh
Q 011130          208 ------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAK  251 (493)
Q Consensus       208 ------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~  251 (493)
                                                          |++|+|++++.++++.|+.||+||+|+||||+.+|+.|++.+++
T Consensus       182 ~~ALaaGN~VVlKps~~tp~~~~~l~~~l~eaglP~gvv~~v~g~~~~~~~~L~~~~~v~~V~fTGS~~~G~~i~~~aa~  261 (498)
T PLN02278        182 GPALAAGCTVVVKPSELTPLTALAAAELALQAGIPPGVLNVVMGDAPEIGDALLASPKVRKITFTGSTAVGKKLMAGAAA  261 (498)
T ss_pred             HHHHHcCCEEEEECCCCChHHHHHHHHHHHHcCCCcccEEEEecCChhhHHHHhcCCCcCEEEEECcHHHHHHHHHHHhh
Confidence                                                99999998777788999999999999999999999999999988


Q ss_pred             cCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCC
Q 011130          252 SNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGI  331 (493)
Q Consensus       252 ~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~  331 (493)
                       ++||+++|+|||||+||++|||+|.|++.|++++|.++||.|+++++||||++++|+|+++|+++++++++|+|.++++
T Consensus       262 -~~~~~~lElGGk~~~iV~~dAdl~~aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~~~f~~~L~~~~~~l~~G~p~~~~~  340 (498)
T PLN02278        262 -TVKRVSLELGGNAPFIVFDDADLDVAVKGALASKFRNSGQTCVCANRILVQEGIYDKFAEAFSKAVQKLVVGDGFEEGV  340 (498)
T ss_pred             -cCCcEEEecCCCCeeEECCCCCHHHHHHHHHHHHhccCCCCCcCCcEEEEeHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          332 QQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       332 ~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      ++||++++.+++++.++|++++++|+++++||......|+|++|||+.+++++|+++++|+||||++|++|+|+||||++
T Consensus       341 ~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gG~~~~~~g~~~~Ptvl~~v~~~~~~~~~E~FGPVl~v~~~~~~deai~~  420 (498)
T PLN02278        341 TQGPLINEAAVQKVESHVQDAVSKGAKVLLGGKRHSLGGTFYEPTVLGDVTEDMLIFREEVFGPVAPLTRFKTEEEAIAI  420 (498)
T ss_pred             cCCCccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCceEeeEEEecCCCCChhhhCCCcCCEEEEEeeCCHHHHHHH
Confidence            99999999999999999999999999999999764446899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      +|+++|||+++|||+|.+.++++++++++|+||||+.....+.+||||+|+||+|+++|++++++|++.|+|+..
T Consensus       421 ~N~~~~gL~a~vft~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~G~~~l~~ft~~k~i~~~  495 (498)
T PLN02278        421 ANDTEAGLAAYIFTRDLQRAWRVSEALEYGIVGVNEGLISTEVAPFGGVKQSGLGREGSKYGIDEYLEIKYVCLG  495 (498)
T ss_pred             HhCCCCCceEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCcCCcccCcCCccchHHHHHHhheeEEEEEe
Confidence            999999999999999999999999999999999998765567799999999999999999999999999998764


No 14 
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=100.00  E-value=1.6e-85  Score=694.17  Aligned_cols=420  Identities=44%  Similarity=0.752  Sum_probs=395.1

Q ss_pred             ccccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 011130           64 DYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERH  143 (493)
Q Consensus        64 ~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~  143 (493)
                      .+.++||||+|+.+.++.+++++||+||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++
T Consensus         5 ~~~~~~I~G~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~dv~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~   82 (488)
T PRK13252          5 PLQSLYIDGAYVEATSGETFEVINPATGEVLATVQAATPADVEAAVASAKQGQK--IWAAMTAMERSRILRRAVDILRER   82 (488)
T ss_pred             ccccccCCCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHh
Confidence            456889999999776788999999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE----------------
Q 011130          144 NDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA----------------  207 (493)
Q Consensus       144 ~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv----------------  207 (493)
                      .++|++++++|+|||..+++..|+..+++.+++++++++.+.+...+...+...++.++|+|||                
T Consensus        83 ~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~PlGVv~~I~p~N~P~~~~~~~  162 (488)
T PRK13252         83 NDELAALETLDTGKPIQETSVVDIVTGADVLEYYAGLAPALEGEQIPLRGGSFVYTRREPLGVCAGIGAWNYPIQIACWK  162 (488)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCCCceEEEEEeeeeEEEEECCCchHHHHHHHH
Confidence            9999999999999999998756999999999999998887766544433344568899999999                


Q ss_pred             -------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHh
Q 011130          208 -------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAA  250 (493)
Q Consensus       208 -------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~  250 (493)
                                                           |++|+|++.+. +++.|+.||+||+|+||||+++|+.|.+.++
T Consensus       163 ~~~ALaaGN~Vv~Kps~~~p~t~~~l~~~~~~aglP~g~v~~v~g~~~-~~~~L~~~~~vd~V~fTGS~~~g~~i~~~aa  241 (488)
T PRK13252        163 SAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGLPDGVFNVVQGDGR-VGAWLTEHPDIAKVSFTGGVPTGKKVMAAAA  241 (488)
T ss_pred             HHHHHhcCCeEEEeCCccCcHHHHHHHHHHHHcCcCcccEEEEecCcH-HHHHHhcCCCCCEEEEECcHHHHHHHHHHHh
Confidence                                                 89999998665 8899999999999999999999999999998


Q ss_pred             hcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCC
Q 011130          251 KSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGG  330 (493)
Q Consensus       251 ~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~  330 (493)
                      . +++|+++|+|||||+||++|||++.|++.+++++|.++||.|+++++||||+++||+|+++|+++++++++|||.+++
T Consensus       242 ~-~l~~~~lElgG~~p~iV~~dAdl~~A~~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~  320 (488)
T PRK13252        242 A-SLKEVTMELGGKSPLIVFDDADLDRAADIAMLANFYSSGQVCTNGTRVFVQKSIKAAFEARLLERVERIRIGDPMDPA  320 (488)
T ss_pred             h-cCCcEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhhcCCCCCCCeEEEEcHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            8 899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHH
Q 011130          331 IQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLD  406 (493)
Q Consensus       331 ~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~  406 (493)
                      +++||++++.+++++.++|++++++|+++++||....    ..|+|++|||+.+++++|++++||+||||++|++|+|++
T Consensus       321 ~~~gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eE~FgPvl~v~~~~~~~  400 (488)
T PRK13252        321 TNFGPLVSFAHRDKVLGYIEKGKAEGARLLCGGERLTEGGFANGAFVAPTVFTDCTDDMTIVREEIFGPVMSVLTFDDED  400 (488)
T ss_pred             CcccccCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCeEEccEEeccCCCCChHhhCCCCCceEEEEeeCCHH
Confidence            9999999999999999999999999999999996432    358999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          407 EVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       407 eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      |||+++|+++|||+++|||+|.+.+.++++++++|+|+||+++...+.+||||+|+||+|+++|.+++++||+.|+|++.
T Consensus       401 eai~~~n~~~~gL~a~I~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~ft~~k~i~~~  480 (488)
T PRK13252        401 EVIARANDTEYGLAAGVFTADLSRAHRVIHQLEAGICWINTWGESPAEMPVGGYKQSGIGRENGIATLEHYTQIKSVQVE  480 (488)
T ss_pred             HHHHHHhCCCCCCeEEEEeCCHHHHHHHHHhcCccEEEECCCCCCCCCCCCCCCccCcCCcCChHHHHHHhcceEEEEEe
Confidence            99999999999999999999999999999999999999998766677899999999999999999999999999999886


Q ss_pred             C
Q 011130          487 L  487 (493)
Q Consensus       487 ~  487 (493)
                      .
T Consensus       481 ~  481 (488)
T PRK13252        481 M  481 (488)
T ss_pred             C
Confidence            4


No 15 
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=100.00  E-value=1.7e-85  Score=692.14  Aligned_cols=415  Identities=40%  Similarity=0.665  Sum_probs=390.2

Q ss_pred             ceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           68 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        68 ~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~-w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      +||||+|+.+.++++++++||+||+++++++.++.+|+++++++|++||+  . |+++|..+|.++|++++++|++++++
T Consensus         2 ~~i~g~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~~w~~~~~~~R~~~L~~~a~~l~~~~~e   79 (477)
T cd07113           2 HFIDGRPVAGQSEKRLDITNPATEQVIASVASATEADVDAAVASAWRAFV--SAWAKTTPAERGRILLRLADLIEQHGEE   79 (477)
T ss_pred             CeECCEEecCCCCCeEeeeCCCCCCEEEEEcCCCHHHHHHHHHHHHHHhH--hhhccCCHHHHHHHHHHHHHHHHHCHHH
Confidence            68999999876678899999999999999999999999999999999997  5 99999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCC------CCCceeEEEeeeeeeE-------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPA------DGPYHVQTLHEPIGVA-------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~------~~~~~~~~~~~PlGVv-------------  207 (493)
                      |++++++|+|||..+++..|+..+++.++++++++++..+...+.      ......++.++|+|||             
T Consensus        80 la~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~  159 (477)
T cd07113          80 LAQLETLCSGKSIHLSRAFEVGQSANFLRYFAGWATKINGETLAPSIPSMQGERYTAFTRREPVGVVAGIVPWNFSVMIA  159 (477)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccCCCceEEEEEeecceEEEEcCCChHHHHH
Confidence            999999999999999875599999999999999988766543321      1224567899999999             


Q ss_pred             ----------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHH
Q 011130          208 ----------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQ  247 (493)
Q Consensus       208 ----------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~  247 (493)
                                                              |++|+|++.+. +++.|+.||+||+|+||||+++|+.|++
T Consensus       160 ~~~i~~ALaaGN~VvlKPs~~tp~~~~~l~~~~~~aglP~gvv~~v~g~~~-~~~~L~~~~~v~~V~fTGS~~~G~~i~~  238 (477)
T cd07113         160 VWKIGAALATGCTIVIKPSEFTPLTLLRVAELAKEAGIPDGVLNVVNGKGA-VGAQLISHPDVAKVSFTGSVATGKKIGR  238 (477)
T ss_pred             HHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHcCcCCCcEEEEecCch-HHHHHhcCCCCCEEEEECcHHHHHHHHH
Confidence                                                    89999998766 8899999999999999999999999999


Q ss_pred             HHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCC
Q 011130          248 LAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPF  327 (493)
Q Consensus       248 ~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~  327 (493)
                      .+++ ++||+++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||++++|+|+++|+++++++++|+|.
T Consensus       239 ~aa~-~~~~~~lElGGkn~~iV~~dAdl~~aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~  317 (477)
T cd07113         239 QAAS-DLTRVTLELGGKNAAAFLKDADIDWVVEGLLTAGFLHQGQVCAAPERFYVHRSKFDELVTKLKQALSSFQVGSPM  317 (477)
T ss_pred             HHHh-hcCceEeecCCCCeeEECCCCCHHHHHHHHHHHHHhhCCCCCcCCcEEEECHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9988 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHH
Q 011130          328 KGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDE  407 (493)
Q Consensus       328 ~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~e  407 (493)
                      |+++++||++++.+++++.++|++++++|+++++||....+.|+|++|||+.+++++|.++++|+||||++|++|+|+||
T Consensus       318 ~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~l~gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FgPvl~v~~~~~~de  397 (477)
T cd07113         318 DESVMFGPLANQPHFDKVCSYLDDARAEGDEIVRGGEALAGEGYFVQPTLVLARSADSRLMREETFGPVVSFVPYEDEEE  397 (477)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCeeEeCEEEecCCCCChHHhCCCCCCeEEEEEeCCHHH
Confidence            99999999999999999999999999999999999976544689999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          408 VIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       408 ai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      ||+++|+++|||+++|||+|.+.++++++++++|+|+||+++..++.+||||+|+||+|+++|.+++++||+.|+|++.
T Consensus       398 ai~~~n~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~~t~~k~v~~~  476 (477)
T cd07113         398 LIQLINDTPFGLTASVWTNNLSKALRYIPRIEAGTVWVNMHTFLDPAVPFGGMKQSGIGREFGSAFIDDYTELKSVMIR  476 (477)
T ss_pred             HHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCccccCCccchHHHHHHhhceEEEEEe
Confidence            9999999999999999999999999999999999999998777778899999999999999999999999999999865


No 16 
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=100.00  E-value=2.2e-85  Score=692.03  Aligned_cols=425  Identities=59%  Similarity=0.999  Sum_probs=398.3

Q ss_pred             CCCccccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCC-CCCCCCHHHHHHHHHHHHHH
Q 011130           61 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADL  139 (493)
Q Consensus        61 ~~~~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~-~w~~~~~~~R~~iL~~la~~  139 (493)
                      +.++.+++||||+|+.+.++.+++++||+||+++++++.++.+++++++++|++||+.+ .|+++|.++|.++|++++++
T Consensus         2 ~~~~~~~~~I~g~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~~~W~~~~~~~R~~~L~~~a~~   81 (481)
T cd07141           2 PEIKYTKIFINNEWHDSVSGKTFPTINPATGEKICEVQEGDKADVDKAVKAARAAFKLGSPWRTMDASERGRLLNKLADL   81 (481)
T ss_pred             cccccccceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHH
Confidence            34667789999999987678899999999999999999999999999999999999742 69999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE------------
Q 011130          140 LERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA------------  207 (493)
Q Consensus       140 l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv------------  207 (493)
                      |+++.++|++++++|+|||..++...|+..+++.++++++++++..+...+.......++.++|+|||            
T Consensus        82 l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~  161 (481)
T cd07141          82 IERDRAYLASLETLDNGKPFSKSYLVDLPGAIKVLRYYAGWADKIHGKTIPMDGDFFTYTRHEPVGVCGQIIPWNFPLLM  161 (481)
T ss_pred             HHHhHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCCceEEEEEeceeEEEEEccChhHHHH
Confidence            99999999999999999999766545999999999999999888877554433445567899999999            


Q ss_pred             -----------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHH
Q 011130          208 -----------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVL  246 (493)
Q Consensus       208 -----------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~  246 (493)
                                                               |++|+|++++.++++.|+.||+||+|+||||+.+|+.|+
T Consensus       162 ~~~~~~~ALaaGN~VVlKps~~~p~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L~~~~~vd~V~ftGs~~~g~~i~  241 (481)
T cd07141         162 AAWKLAPALACGNTVVLKPAEQTPLTALYLASLIKEAGFPPGVVNVVPGYGPTAGAAISSHPDIDKVAFTGSTEVGKLIQ  241 (481)
T ss_pred             HHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHcCcCccceEEEecCchHHHHHHhcCCCCCEEEEECcHHHHHHHH
Confidence                                                     999999997777889999999999999999999999999


Q ss_pred             HHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCC
Q 011130          247 QLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDP  326 (493)
Q Consensus       247 ~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p  326 (493)
                      +.++..++||+++|+|||||+||++|||++.|++.|++++|.++||.|+++++||||+++||+|+++|+++++++++|+|
T Consensus       242 ~~aa~~~~~~~~lElGG~~~~iV~~dADl~~A~~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~G~p  321 (481)
T cd07141         242 QAAGKSNLKRVTLELGGKSPNIVFADADLDYAVEQAHEALFFNMGQCCCAGSRTFVQESIYDEFVKRSVERAKKRVVGNP  321 (481)
T ss_pred             HHhhhhcCceEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCcccCCeEEEEcHHHHHHHHHHHHHHHHhCCCCCC
Confidence            98874478999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHH
Q 011130          327 FKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLD  406 (493)
Q Consensus       327 ~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~  406 (493)
                      +|+++++||++++.+++++.++|++++++|+++++||+..+..|+|++|||+.+++++|++++||+||||++|++|+|++
T Consensus       322 ~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~  401 (481)
T cd07141         322 FDPKTEQGPQIDEEQFKKILELIESGKKEGAKLECGGKRHGDKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIFKFKTID  401 (481)
T ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEeeEEEecCCCCChhhhccccCCeEEEEeeCCHH
Confidence            99999999999999999999999999999999999998755578999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          407 EVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       407 eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      |||+++|+++|||+++|||+|.+++.++++++++|+||||++...++.+||||+|+||+|+++|.+++++||+.|++++
T Consensus       402 eai~~~n~~~~gLs~~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~ft~~k~v~~  480 (481)
T cd07141         402 EVIERANNTTYGLAAAVFTKDIDKAITFSNALRAGTVWVNCYNVVSPQAPFGGYKMSGNGRELGEYGLQEYTEVKTVTI  480 (481)
T ss_pred             HHHHHHhCCCccceEEEECCCHHHHHHHHHhcCcCeEEECCCCCCCCCCCCCCcccCcCCccchHHHHHHHhheEEEEE
Confidence            9999999999999999999999999999999999999999987778889999999999999999999999999999875


No 17 
>PLN02467 betaine aldehyde dehydrogenase
Probab=100.00  E-value=1.4e-84  Score=686.04  Aligned_cols=420  Identities=42%  Similarity=0.715  Sum_probs=394.8

Q ss_pred             ccccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHc-----cCCCCCCCCHHHHHHHHHHHHH
Q 011130           64 DYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAF-----DEGPWPRMTAYERSKIILRFAD  138 (493)
Q Consensus        64 ~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~-----~~~~w~~~~~~~R~~iL~~la~  138 (493)
                      ...++||||+|+.+.++.+++++||+||++|++++.++.+|+++||++|++||     +  .|+++|..+|.++|+++++
T Consensus         6 ~~~~~~I~g~~~~~~~~~~~~v~~P~t~~~i~~~~~~~~~dv~~av~~A~~a~~~~~~~--~W~~~~~~~R~~~L~~~a~   83 (503)
T PLN02467          6 PRRQLFIGGEWREPVLGKRIPVVNPATEETIGDIPAATAEDVDAAVEAARKAFKRNKGK--DWARTTGAVRAKYLRAIAA   83 (503)
T ss_pred             CccCceECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHhhhcccc--hhhcCCHHHHHHHHHHHHH
Confidence            34578999999987677899999999999999999999999999999999999     6  8999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccC-CCC---CCceeEEEeeeeeeE-------
Q 011130          139 LLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTA-PAD---GPYHVQTLHEPIGVA-------  207 (493)
Q Consensus       139 ~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~-~~~---~~~~~~~~~~PlGVv-------  207 (493)
                      +|++++++|++++++|+|||+.++.. |+..+++.++|++.+++++.+... +..   .....++.++|+|||       
T Consensus        84 ~l~~~~~ela~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN  162 (503)
T PLN02467         84 KITERKSELAKLETLDCGKPLDEAAW-DMDDVAGCFEYYADLAEALDAKQKAPVSLPMETFKGYVLKEPLGVVGLITPWN  162 (503)
T ss_pred             HHHHhHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCccccccCCCCCCceeEEEEecCceEEEECCCC
Confidence            99999999999999999999999985 999999999999999888766432 111   234568899999999       


Q ss_pred             ----------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHH
Q 011130          208 ----------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTT  241 (493)
Q Consensus       208 ----------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~  241 (493)
                                                                    |++|+|++.+.++++.|+.||+|++|+||||+.+
T Consensus       163 ~P~~~~~~~i~~ALaaGN~Vv~Kps~~tp~~~~~l~~~~~eag~P~gvv~~v~g~~~~~~~~L~~~~~v~~v~fTGs~~~  242 (503)
T PLN02467        163 YPLLMATWKVAPALAAGCTAVLKPSELASVTCLELADICREVGLPPGVLNVVTGLGTEAGAPLASHPGVDKIAFTGSTAT  242 (503)
T ss_pred             hHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHcCcCcCeEEEEeCCchhHHHHHhcCCCCCEEEEECCHHH
Confidence                                                          8999999977788999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhc
Q 011130          242 GKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKR  321 (493)
Q Consensus       242 g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~  321 (493)
                      |+.|++.+++ ++||+++|+|||||+||++|||++.|++.|++++|.|+||.|+++++||||++++|+|+++|+++++++
T Consensus       243 g~~v~~~aa~-~~~~~~lElGG~~~~iV~~dADl~~A~~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l  321 (503)
T PLN02467        243 GRKIMTAAAQ-MVKPVSLELGGKSPIIVFDDVDLDKAVEWAMFGCFWTNGQICSATSRLLVHERIASEFLEKLVKWAKNI  321 (503)
T ss_pred             HHHHHHHHhc-cCCcEEEECCCCCceEECCCCCHHHHHHHHHHHHHhhcCCCCCCCcEEEEcHHHHHHHHHHHHHHHHhc
Confidence            9999999988 899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC--CCCceeeceEEecCCCCccccccccccceEEE
Q 011130          322 VVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG--AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSI  399 (493)
Q Consensus       322 ~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~--~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v  399 (493)
                      ++|||.|+++++||++++.+++++.++|++++.+|+++++||....  ..|+|++|||+.+++++|+++++|+||||++|
T Consensus       322 ~~g~p~~~~~~~Gpli~~~~~~~v~~~v~~a~~~Ga~vl~gG~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eE~FgPvl~v  401 (503)
T PLN02467        322 KISDPLEEGCRLGPVVSEGQYEKVLKFISTAKSEGATILCGGKRPEHLKKGFFIEPTIITDVTTSMQIWREEVFGPVLCV  401 (503)
T ss_pred             CCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCCCeEEeeEEEeCCCCCChHhhCCCCCceEEE
Confidence            9999999999999999999999999999999999999999997532  36899999999999999999999999999999


Q ss_pred             EEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhh
Q 011130          400 LKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQ  479 (493)
Q Consensus       400 ~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~  479 (493)
                      ++|+|.||||+++|+++|||+++|||+|.+.+.++++++++|+||||+.+...+.+||||+|+||+|+++|.+++++|++
T Consensus       402 ~~~~~~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~G~~~l~~ft~  481 (503)
T PLN02467        402 KTFSTEDEAIELANDSHYGLAGAVISNDLERCERVSEAFQAGIVWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLS  481 (503)
T ss_pred             EeeCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcccCcCCCcchHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999977667789999999999999999999999999


Q ss_pred             ceEEEEeC
Q 011130          480 VKAVVTAL  487 (493)
Q Consensus       480 ~k~v~~~~  487 (493)
                      .|+++..+
T Consensus       482 ~k~i~~~~  489 (503)
T PLN02467        482 VKQVTKYI  489 (503)
T ss_pred             eEEEEEec
Confidence            99999864


No 18 
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=100.00  E-value=2.1e-84  Score=683.01  Aligned_cols=421  Identities=51%  Similarity=0.891  Sum_probs=393.9

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHHHHHHHhH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWP-RMTAYERSKIILRFADLLERHN  144 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~-~~~~~~R~~iL~~la~~l~~~~  144 (493)
                      .++||||+|+.+.++.+++++||+||+++++++.++.+|+++++++|++||+. .|+ ++|.++|.++|++++++|+++.
T Consensus         7 ~~~~I~G~~~~~~~~~~~~v~~P~t~~~i~~~~~~~~~~v~~av~~a~~a~~~-~W~~~~~~~~R~~~L~~~a~~l~~~~   85 (481)
T cd07143           7 TGLFINGEFVDSVHGGTVKVYNPSTGKLITKIAEATEADVDIAVEVAHAAFET-DWGLKVSGSKRGRCLSKLADLMERNL   85 (481)
T ss_pred             cCceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhhhh-hhcccCCHHHHHHHHHHHHHHHHHhH
Confidence            47899999998766788999999999999999999999999999999999972 399 9999999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-----------------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-----------------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-----------------  207 (493)
                      ++|++++++|+|||..+....|+..+++.+++++.++++..+...+...+...++.++|+|||                 
T Consensus        86 ~~l~~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~a~~a~~~~g~~~~~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~  165 (481)
T cd07143          86 DYLASIEALDNGKTFGTAKRVDVQASADTFRYYGGWADKIHGQVIETDIKKLTYTRHEPIGVCGQIIPWNFPLLMCAWKI  165 (481)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCceEEEEEecceeEEEECCCcChHHHHHHHH
Confidence            999999999999998665445999999999999999988766544433344567899999999                 


Q ss_pred             ------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhh
Q 011130          208 ------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAK  251 (493)
Q Consensus       208 ------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~  251 (493)
                                                          |++|+|++.+.++++.|+.||++|.|+||||+.+|+.|++.++.
T Consensus       166 ~~ALaaGN~VvlKps~~~p~~~~~l~~~l~~aGlP~g~v~~v~g~~~~~~~~L~~~~~vd~V~fTGs~~~G~~i~~~aa~  245 (481)
T cd07143         166 APALAAGNTIVLKPSELTPLSALYMTKLIPEAGFPPGVINVVSGYGRTCGNAISSHMDIDKVAFTGSTLVGRKVMEAAAK  245 (481)
T ss_pred             HHHHHcCCEEEEeCCCCCcHHHHHHHHHHHhcCcCcccEEEEeCCchhHHHHHhcCCCCCEEEEECchHHHHHHHHHHHH
Confidence                                                89999999777888999999999999999999999999998874


Q ss_pred             cCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCC
Q 011130          252 SNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGI  331 (493)
Q Consensus       252 ~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~  331 (493)
                      .+++|+++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||++++|+|+++|++++.++++|+|.++++
T Consensus       246 ~~~~~~~lElGG~~p~iV~~dADl~~Aa~~i~~~~~~naGQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~G~p~~~~~  325 (481)
T cd07143         246 SNLKKVTLELGGKSPNIVFDDADLESAVVWTAYGIFFNHGQVCCAGSRIYVQEGIYDKFVKRFKEKAKKLKVGDPFAEDT  325 (481)
T ss_pred             hcCCEEEeecCCCCeeEECCCCCHHHHHHHHHHHHHhccCCCCCCCcEEEEeHhHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          332 QQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       332 ~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      ++||++++.+++++.++|++++.+|+++++||......|+|++|||+.+++++|+++++|+||||++|++|+|++|||++
T Consensus       326 ~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~eai~~  405 (481)
T cd07143         326 FQGPQVSQIQYERIMSYIESGKAEGATVETGGKRHGNEGYFIEPTIFTDVTEDMKIVKEEIFGPVVAVIKFKTEEEAIKR  405 (481)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCCCCCCCceEEeeEEEecCCCCChhhhcCCcCCeEEEEeeCCHHHHHHH
Confidence            99999999999999999999999999999999865557899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      +|+++|||+++|||+|.+.+.++++++++|+|+||+.+...+.+||||+|+||+|+++|.+++++||+.|++++.+
T Consensus       406 ~n~~~~gL~~~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~G~~~l~~~t~~k~i~~~~  481 (481)
T cd07143         406 ANDSTYGLAAAVFTNNINNAIRVANALKAGTVWVNCYNLLHHQVPFGGYKQSGIGRELGEYALENYTQIKAVHINL  481 (481)
T ss_pred             HhCCCCCceEEEECCCHHHHHHHHHhcCcCeEEECCCCCCCCCCCCCCccccccCcccHHHHHHHHhCeEEEEEeC
Confidence            9999999999999999999999999999999999998777888999999999999999999999999999998753


No 19 
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=100.00  E-value=1.9e-84  Score=684.43  Aligned_cols=417  Identities=27%  Similarity=0.453  Sum_probs=389.4

Q ss_pred             CccccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 011130           63 VDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLER  142 (493)
Q Consensus        63 ~~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~  142 (493)
                      +...++||||+|+.  ++.+++++||.||+++++++.++.+|+++||++|++||+  .|++++..+|.++|++++++|++
T Consensus        18 ~~~~~~~I~G~~~~--~~~~~~~~nP~t~~~i~~~~~a~~~~v~~av~~A~~A~~--~W~~~~~~~R~~~L~~~a~~l~~   93 (508)
T PLN02315         18 SRNLGCYVGGEWRA--NGPLVSSVNPANNQPIAEVVEASLEDYEEGLRACEEAAK--IWMQVPAPKRGEIVRQIGDALRA   93 (508)
T ss_pred             ccccCceECCEEec--CCCeeeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHh
Confidence            44568899999985  367899999999999999999999999999999999999  99999999999999999999999


Q ss_pred             hHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE--------------
Q 011130          143 HNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA--------------  207 (493)
Q Consensus       143 ~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv--------------  207 (493)
                      +.++|++++++|+|||+.++. .|+..+++.++|+++.++++.+...+.. .+...+..++|+|||              
T Consensus        94 ~~~~la~~~~~e~GK~~~~a~-~ev~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~  172 (508)
T PLN02315         94 KLDYLGRLVSLEMGKILAEGI-GEVQEIIDMCDFAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLG  172 (508)
T ss_pred             HHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEecceEEEEECCCcchHHHHH
Confidence            999999999999999999997 4999999999999998887766544432 234556789999999              


Q ss_pred             -------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHH
Q 011130          208 -------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKI  244 (493)
Q Consensus       208 -------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~  244 (493)
                                                                 |++|+|++ +.++++.|+.||++++|+||||+++|+.
T Consensus       173 ~~~~~ALaaGN~VVlKPs~~tp~~~~~~~~l~~~~~~~aGlP~gvv~~v~g-~~~~~~~l~~~~~v~~v~fTGS~~~G~~  251 (508)
T PLN02315        173 WNACIALVCGNCVVWKGAPTTPLITIAMTKLVAEVLEKNNLPGAIFTSFCG-GAEIGEAIAKDTRIPLVSFTGSSKVGLM  251 (508)
T ss_pred             HHHhHHHHcCCEEEeeCCCcChHHHHHHHHHHHHHHHHcCCCcccEEEecC-ChHHHHHHhcCCCCCEEEEECCHHHHHH
Confidence                                                       89999998 7788999999999999999999999999


Q ss_pred             HHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccC
Q 011130          245 VLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVG  324 (493)
Q Consensus       245 v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg  324 (493)
                      |++.++. +++|+++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||+++||+|+++|+++++++++|
T Consensus       252 v~~~aa~-~~~~~~lElgGknp~iV~~dADl~~Aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~vG  330 (508)
T PLN02315        252 VQQTVNA-RFGKCLLELSGNNAIIVMDDADIQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYDDVLEQLLTVYKQVKIG  330 (508)
T ss_pred             HHHHHHh-cCCCEEEecCCCCeEEECCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEeHHHHHHHHHHHHHHHHhcCCC
Confidence            9998887 889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCC
Q 011130          325 DPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKD  404 (493)
Q Consensus       325 ~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~  404 (493)
                      ||.++++.+||+++..+++++.+++++++++|+++++||...+..|+|++|||+ +++++|.+++||+||||++|++|+|
T Consensus       331 ~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gG~~~~~~g~~~~Ptvl-~v~~~~~i~~eE~FGPVl~V~~~~~  409 (508)
T PLN02315        331 DPLEKGTLLGPLHTPESKKNFEKGIEIIKSQGGKILTGGSAIESEGNFVQPTIV-EISPDADVVKEELFGPVLYVMKFKT  409 (508)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCCCeEEecEEE-ecCCCChHHhCCCcCCEEEEEEeCC
Confidence            999999999999999999999999999999999999999765557899999999 5999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcEEEEecCCHHHHHHHHH--hcceeEEEECCcCC-CCCCCCccCCCCCCCCCcchHHHHHhhhhce
Q 011130          405 LDEVIQRSNASQYGLAAGVFTHNLDTANTLMR--ALRVGSVWINCFDV-FDAAIPFGGYKQSGQGREKGSYSLSNYLQVK  481 (493)
Q Consensus       405 ~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~--~l~~g~V~VN~~~~-~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k  481 (493)
                      +||||+++|+++|||+++|||+|.+.++++++  ++++|.||||+.+. ..+.+||||+|+||+|+++|.+++++||+.|
T Consensus       410 ~deai~~aN~~~~gL~a~Vft~d~~~a~~~~~~~~l~~G~v~iN~~~~~~~~~~PfGG~k~SG~G~~~G~~~l~~ft~~k  489 (508)
T PLN02315        410 LEEAIEINNSVPQGLSSSIFTRNPETIFKWIGPLGSDCGIVNVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRS  489 (508)
T ss_pred             HHHHHHHHhCCCCCCeEEEEcCCHHHHHHHhhhcccceeEEEEcCCCCCCCCCCCCCccccccCCccchHHHHHHHhhEE
Confidence            99999999999999999999999999999985  79999999998644 3478999999999999999999999999999


Q ss_pred             EEEEeC
Q 011130          482 AVVTAL  487 (493)
Q Consensus       482 ~v~~~~  487 (493)
                      +|++..
T Consensus       490 ~v~~~~  495 (508)
T PLN02315        490 TCTINY  495 (508)
T ss_pred             EEEEec
Confidence            998775


No 20 
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=100.00  E-value=1.4e-84  Score=685.58  Aligned_cols=417  Identities=41%  Similarity=0.684  Sum_probs=389.4

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      +++||||+|+.+.++++++++||.||+++++++.++.+|+++|+++|++||+  .|+++|..+|.++|++++++|+++.+
T Consensus         1 ~~~~i~g~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~dv~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~   78 (479)
T cd07116           1 YDNFIGGEWVAPVKGEYFDNITPVTGKVFCEVPRSTAEDIELALDAAHAAKE--AWGKTSVAERANILNKIADRMEANLE   78 (479)
T ss_pred             CCceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHHhHH
Confidence            3679999999877788999999999999999999999999999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE------------------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA------------------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv------------------  207 (493)
                      +|++++++|+|||..++...|+..+++.++++++.+++..+...+...+...++.++|+|||                  
T Consensus        79 ~la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~  158 (479)
T cd07116          79 MLAVAETWDNGKPVRETLAADIPLAIDHFRYFAGCIRAQEGSISEIDENTVAYHFHEPLGVVGQIIPWNFPLLMATWKLA  158 (479)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhHHHcCCeeecCCCCceEEEEEeccceEEEECCCchHHHHHHHHHH
Confidence            99999999999999988756999999999999998877665544433445678899999999                  


Q ss_pred             ----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcC
Q 011130          208 ----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSN  253 (493)
Q Consensus       208 ----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~  253 (493)
                                                        |++|+|++.+.+++..|+.||+||+|+||||+++|+.|++.+++ +
T Consensus       159 ~ALaaGN~VV~KPs~~tp~~~~~l~~l~~~alP~gvv~~v~g~~~~~~~~L~~~~~v~~V~fTGS~~~G~~i~~~aa~-~  237 (479)
T cd07116         159 PALAAGNCVVLKPAEQTPASILVLMELIGDLLPPGVVNVVNGFGLEAGKPLASSKRIAKVAFTGETTTGRLIMQYASE-N  237 (479)
T ss_pred             HHHHcCCEEEEECCCCChHHHHHHHHHHHHHCCcCcEEEEecCchhHHHHHhcCCCcCEEEEECCHHHHHHHHHHHHc-C
Confidence                                              89999998777889999999999999999999999999999988 8


Q ss_pred             CCceeEecCCCCceEEccC------CCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCC
Q 011130          254 LKPVTLELGGKSPFIVCED------ADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPF  327 (493)
Q Consensus       254 ~~pv~lelgG~~p~iV~~d------aDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~  327 (493)
                      +||+++|||||||+||++|      ||+|.|++.++.+. +|+||.|++++|||||++++|+|+++|+++++++++|+|.
T Consensus       238 ~~p~~lElGGk~p~iV~~da~~~~~adl~~A~~~i~~~~-~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~~G~p~  316 (479)
T cd07116         238 IIPVTLELGGKSPNIFFADVMDADDAFFDKALEGFVMFA-LNQGEVCTCPSRALIQESIYDRFMERALERVKAIKQGNPL  316 (479)
T ss_pred             CCeEEEECCCCCeEEEecCcccccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEEcHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999988      79999999999864 6999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeC
Q 011130          328 KGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK  403 (493)
Q Consensus       328 ~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~  403 (493)
                      ++++.+||++++.+++++.++|++++++|+++++||....    ..|+|+.|||+.+++ +|.+++||+||||++|++|+
T Consensus       317 ~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~~g~~~~Ptvl~~~~-~~~~~~eE~FGPVl~v~~~~  395 (479)
T cd07116         317 DTETMIGAQASLEQLEKILSYIDIGKEEGAEVLTGGERNELGGLLGGGYYVPTTFKGGN-KMRIFQEEIFGPVLAVTTFK  395 (479)
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCCCeeecCeEEccCC-CChhhhcCCcCceEEEEEeC
Confidence            9999999999999999999999999999999999997532    368999999999874 99999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEE
Q 011130          404 DLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV  483 (493)
Q Consensus       404 ~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v  483 (493)
                      |+||||+++|+++|||+++|||+|.+.+.++++++++|.||||+++...+.+||||+|+||+|+++|.++|++|++.|++
T Consensus       396 ~~~eai~~aN~~~~gLsa~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~~~~~k~~  475 (479)
T cd07116         396 DEEEALEIANDTLYGLGAGVWTRDGNTAYRMGRGIQAGRVWTNCYHLYPAHAAFGGYKQSGIGRENHKMMLDHYQQTKNL  475 (479)
T ss_pred             CHHHHHHHHhCCcccceEEEEcCCHHHHHHHHHhcCcCeEEECCCCCCCCCCCcCCCccCcCCccChHHHHHHhhceEEE
Confidence            99999999999999999999999999999999999999999998877778899999999999999999999999999999


Q ss_pred             EEeC
Q 011130          484 VTAL  487 (493)
Q Consensus       484 ~~~~  487 (493)
                      ++++
T Consensus       476 ~~~~  479 (479)
T cd07116         476 LVSY  479 (479)
T ss_pred             EEeC
Confidence            8753


No 21 
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=100.00  E-value=2.4e-84  Score=684.17  Aligned_cols=415  Identities=38%  Similarity=0.622  Sum_probs=388.4

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~-w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      ++||||+|+.  ++.+++++||+||+++++++.++.+|+++++++|++||+  . |+++|.++|.++|++++++|+++.+
T Consensus         2 ~~~i~g~~~~--~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~~w~~~~~~~R~~~L~~~a~~l~~~~~   77 (481)
T TIGR03216         2 RNFINGAFVE--SGKTFANINPVDGRVIARVHEAGAAEVDAAVAAARAALK--GPWGKMTVAERADLLYAVADEIERRFD   77 (481)
T ss_pred             CceECCEEec--CCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhH--hhHhhCCHHHHHHHHHHHHHHHHHhHH
Confidence            5799999996  568899999999999999999999999999999999998  7 9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCC----CCCceeEEEeeeeeeE--------------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPA----DGPYHVQTLHEPIGVA--------------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~----~~~~~~~~~~~PlGVv--------------  207 (493)
                      +|++++++|+|||..++...|+..+++.+++++..+++..+...+.    ..+...+..++|+|||              
T Consensus        78 ela~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~Pl~~~~  157 (481)
T TIGR03216        78 DFLAAEVADTGKPRSLASHLDIPRGAANFRVFADVVKNAPTECFEMATPDGKGALNYAVRKPLGVVGVISPWNLPLLLMT  157 (481)
T ss_pred             HHHHHHHHHcCCcHHHHhHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCceeEEEEeccceEEEECCCCcHHHHHH
Confidence            9999999999999988865599999999999999887765544321    1134567889999999              


Q ss_pred             ---------------------------------------eEEEeeeCCcc-chhhhhhccccccEEEEecCcHHHHHHHH
Q 011130          208 ---------------------------------------GVLNIVSGYGP-TAGAALASHMEVDKLAFTGSTTTGKIVLQ  247 (493)
Q Consensus       208 ---------------------------------------gvv~vv~~~~~-~~~~~L~~~~~v~~v~fTGs~~~g~~v~~  247 (493)
                                                             |++|+|++.+. ++++.|..||+||+|+||||+.+|+.|++
T Consensus       158 ~~~~~ALaaGN~vvlKPs~~tp~t~~~l~~l~~~aglP~g~~~~v~g~~~~~~~~~l~~~~~vd~v~fTGS~~~G~~i~~  237 (481)
T TIGR03216       158 WKVGPALACGNTVVVKPSEETPGTATLLGEVMNAVGVPKGVYNVVHGFGPDSAGEFLTRHPGVDAITFTGETRTGSAIMK  237 (481)
T ss_pred             HHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHcCCCcCceEEEecCChhHHHHHHhcCCCCCEEEEECCHHHHHHHHH
Confidence                                                   89999998655 47888999999999999999999999999


Q ss_pred             HHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCC
Q 011130          248 LAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPF  327 (493)
Q Consensus       248 ~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~  327 (493)
                      .+++ ++||+++|+|||||+||++|||+|.|++.+++++|.|+||.|+++++||||++++|+|+++|++++.++++|+|.
T Consensus       238 ~aa~-~~~~~~lElgG~n~~iV~~dadl~~aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~~~~g~p~  316 (481)
T TIGR03216       238 AAAD-GVKPVSFELGGKNAAIVFADCDFDAAVAGILRSAFLNTGQVCLGTERVYVERPIFDRFVAALKARAESLKIGVPD  316 (481)
T ss_pred             HHhc-CCCeEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEcHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            9988 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC-----CCCceeeceEEecCCCCccccccccccceEEEEEe
Q 011130          328 KGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG-----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKY  402 (493)
Q Consensus       328 ~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~-----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~  402 (493)
                      ++++++||++++.+++++.++|++++++|+++++||....     ..|+|++|||+.+++++|++++||+||||++|++|
T Consensus       317 ~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eE~FgPvl~V~~~  396 (481)
T TIGR03216       317 DPATNMGPLISAEHRDKVLSYYALAVEEGATVVTGGGVPDFGDALAGGAWVQPTIWTGLPDSARVVTEEIFGPCCHIAPF  396 (481)
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcccccccCCCCceEccEEEeCCCCCCHHHhCCCCCceEEEEEe
Confidence            9999999999999999999999999999999999997532     36899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceE
Q 011130          403 KDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKA  482 (493)
Q Consensus       403 ~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~  482 (493)
                      +|.||||+++|+++|||+++|||+|.+.+.++++++++|.||||+....++.+||||+|+||+|+++|.+++++|++.|+
T Consensus       397 ~~~~eai~~~n~~~~gL~~~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~f~~~k~  476 (481)
T TIGR03216       397 DSEEEVIALANDTPYGLAASVWTEDLSRAHRVARQMEVGIVWVNSWFLRDLRTPFGGSKLSGIGREGGVHSLEFYTELTN  476 (481)
T ss_pred             CCHHHHHHHHhCCCccceEEEECCCHHHHHHHHHhcCccEEEECCCCCCCCCCCcCCcccCcCCcCchHHHHHHhhceEE
Confidence            99999999999999999999999999999999999999999999877777889999999999999999999999999999


Q ss_pred             EEEe
Q 011130          483 VVTA  486 (493)
Q Consensus       483 v~~~  486 (493)
                      ++++
T Consensus       477 v~~~  480 (481)
T TIGR03216       477 VCIK  480 (481)
T ss_pred             EEEe
Confidence            9765


No 22 
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=100.00  E-value=2.5e-84  Score=683.85  Aligned_cols=419  Identities=37%  Similarity=0.640  Sum_probs=393.2

Q ss_pred             cccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhH
Q 011130           65 YTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHN  144 (493)
Q Consensus        65 ~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~  144 (493)
                      +.++||||+|+.+ ++++++++||+||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|++++
T Consensus         2 ~~~~~i~g~~~~~-~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~   78 (475)
T PRK13473          2 QTKLLINGELVAG-EGEKQPVYNPATGEVLAEIAEASAAQVDAAVAAADAAFP--EWSQTTPKERAEALLKLADAIEENA   78 (475)
T ss_pred             CccceECCEEecC-CCCEEeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            3578999999875 678999999999999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCC-CCCceeEEEeeeeeeE----------------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPA-DGPYHVQTLHEPIGVA----------------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~-~~~~~~~~~~~PlGVv----------------  207 (493)
                      ++|++++++|+|||..++...|+..+++.+++++..++.+.+...+. ..+...++.++|+|||                
T Consensus        79 ~~la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~r~P~GVv~~I~p~N~P~~~~~~~  158 (475)
T PRK13473         79 DEFARLESLNCGKPLHLALNDEIPAIVDVFRFFAGAARCLEGKAAGEYLEGHTSMIRRDPVGVVASIAPWNYPLMMAAWK  158 (475)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCceeEEEEecceeEEEEccCChHHHHHHHH
Confidence            99999999999999988865599999999999998888776543321 1233467889999999                


Q ss_pred             ------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhh
Q 011130          208 ------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAK  251 (493)
Q Consensus       208 ------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~  251 (493)
                                                          |++|+|++.+.++++.|+.|++||+|+||||+++|+.|++.++.
T Consensus       159 i~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~alP~gv~~~v~g~~~~~~~~l~~~~~vd~V~fTGs~~~g~~i~~~aa~  238 (475)
T PRK13473        159 LAPALAAGNTVVLKPSEITPLTALKLAELAADILPPGVLNVVTGRGATVGDALVGHPKVRMVSLTGSIATGKHVLSAAAD  238 (475)
T ss_pred             HHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCcCcEEEEecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhh
Confidence                                                89999999777889999999999999999999999999999988


Q ss_pred             cCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCC
Q 011130          252 SNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGI  331 (493)
Q Consensus       252 ~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~  331 (493)
                       +++|+++|+|||||+||++|||+|.|++.+++++|+|+||.|+++++||||++++|+|+++|+++++++++|+|.++++
T Consensus       239 -~~~~~~lElgG~~p~iV~~dADld~Aa~~i~~~~f~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~~G~p~~~~~  317 (475)
T PRK13473        239 -SVKRTHLELGGKAPVIVFDDADLDAVVEGIRTFGYYNAGQDCTAACRIYAQRGIYDDLVAKLAAAVATLKVGDPDDEDT  317 (475)
T ss_pred             -cCCcEEEECCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEcHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHhCC-CEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHH
Q 011130          332 QQGPQIDSEQFEKILKYIRSGVDGG-AKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQ  410 (493)
Q Consensus       332 ~~gpli~~~~~~~~~~~i~~a~~~g-a~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~  410 (493)
                      ++||++++.+++++.++|+++.++| +++++||......|+|++|||+.++++++.++++|+||||++|++|+|+||||+
T Consensus       318 ~~gpli~~~~~~~v~~~i~~a~~~G~a~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~deai~  397 (475)
T PRK13473        318 ELGPLISAAHRDRVAGFVERAKALGHIRVVTGGEAPDGKGYYYEPTLLAGARQDDEIVQREVFGPVVSVTPFDDEDQAVR  397 (475)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEECCCcCCCCceeEcCEEEecCCCCChhhhCCccCCeEEEeccCCHHHHHH
Confidence            9999999999999999999999999 999999986544689999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          411 RSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       411 ~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      ++|+++|||+++|||+|.+.+.++++++++|+|+||++....+.+||||+|+||+|+++|.+++++||+.|++++..
T Consensus       398 ~~N~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~~t~~k~i~~~~  474 (475)
T PRK13473        398 WANDSDYGLASSVWTRDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKQSGYGKDMSLYGLEDYTVVRHVMVKH  474 (475)
T ss_pred             HHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCccccccCccchHHHHHHHhceEEEEEec
Confidence            99999999999999999999999999999999999998777788999999999999999999999999999998753


No 23 
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=100.00  E-value=7.1e-84  Score=682.15  Aligned_cols=416  Identities=42%  Similarity=0.718  Sum_probs=390.9

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      ++||||+|+.+.++.+++++||+||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|++++++
T Consensus         2 ~~~i~g~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~iL~~~a~~l~~~~~~   79 (488)
T TIGR02299         2 GHFIDGEFVPSESGETFETLSPATNEVLGSVARGGAADVDRAAKAAKEAFK--RWAELKAAERKRYLHKIADLIEQHADE   79 (488)
T ss_pred             CccCCCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHH
Confidence            579999999876678899999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhH-HhcCccCCCCCCceeEEEeeeeeeE------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWAD-KIQGLTAPADGPYHVQTLHEPIGVA------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~-~~~~~~~~~~~~~~~~~~~~PlGVv------------------  207 (493)
                      |++++++|+|||..+++ .|+..+++.++++++.++ ...+...+.. ....++.++|+|||                  
T Consensus        80 l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~  157 (488)
T TIGR02299        80 IAVLECLDCGQPLRQTR-QQVIRAAENFRFFADKCEEAMDGRTYPVD-THLNYTVRVPVGPVGLITPWNAPFMLSTWKIA  157 (488)
T ss_pred             HHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHhHHHhcCCccccCC-CceEEEEEEecceEEEECCCccHHHHHHHHHH
Confidence            99999999999999998 499999999999998877 3444333332 34567889999999                  


Q ss_pred             -----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhc
Q 011130          208 -----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKS  252 (493)
Q Consensus       208 -----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~  252 (493)
                                                         |++|+|++.+.+.++.|+.||+||+|+||||+.+|+.|++.+++ 
T Consensus       158 ~ALaaGN~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~aa~-  236 (488)
T TIGR02299       158 PALAFGNTVVLKPAEWSPLTAARLAEIAKEAGLPDGVFNLVHGFGEEAGKALVAHPDVKAVSFTGETATGSIIMRNGAD-  236 (488)
T ss_pred             HHHHcCCEEEEECchhchHHHHHHHHHHHHcCcChhheeEEeCCchHHHHHHhcCCCcCEEEEECcHHHHHHHHHHHHh-
Confidence                                               89999998777788899999999999999999999999999988 


Q ss_pred             CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCc
Q 011130          253 NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQ  332 (493)
Q Consensus       253 ~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~  332 (493)
                      ++||+++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||++++|+|+++|+++++++++|+|.+++++
T Consensus       237 ~l~~~~lElGGknp~iV~~dAdl~~A~~~i~~~~~~~~GQ~C~a~~rv~V~~~v~d~f~~~l~~~~~~l~~g~p~~~~~~  316 (488)
T TIGR02299       237 TLKRFSMELGGKSPVIVFDDADLERALDAVVFMIFSFNGERCTASSRLLVQESIAEDFVEKLVERVRAIRVGHPLDPETE  316 (488)
T ss_pred             cCCeEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhccCCCCCCCcEEEEcHHHHHHHHHHHHHHHhhCCcCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC-------CCCceeeceEEecCCCCccccccccccceEEEEEeCCH
Q 011130          333 QGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG-------AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDL  405 (493)
Q Consensus       333 ~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~-------~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~  405 (493)
                      +||++++.+++++.++|++++++|+++++||....       ..|+|++|||+.+++++|.+++||+||||++|++|+|+
T Consensus       317 ~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~~~~~~g~~~~Ptvl~~~~~~~~i~~eE~FgPvl~v~~~~~~  396 (488)
T TIGR02299       317 VGPLIHPEHLAKVLGYVEAAEKEGATILVGGERAPTFRGEDLGRGNYVLPTVFTGADNHMRIAQEEIFGPVLTVIPFKDE  396 (488)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCcccccccCCCCeEEccEEEecCCCCCchhhCCCcCCeEEEEeeCCH
Confidence            99999999999999999999999999999996532       25899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          406 DEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       406 ~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      +|||+++|+++|||+++|||+|.+.++++++++++|+||||+.....+.+||||+|+||+|+++|.+++++|++.|++++
T Consensus       397 ~eai~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~~~~~k~i~~  476 (488)
T TIGR02299       397 EEAIEKANDTRYGLAGYVWTNDVGRAHRVALALEAGMIWVNSQNVRHLPTPFGGVKASGIGREGGTYSFDFYTETKNVAL  476 (488)
T ss_pred             HHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCCCCccCcCCccchHHHHHHHhceEEEEE
Confidence            99999999999999999999999999999999999999999877667789999999999999999999999999999988


Q ss_pred             eC
Q 011130          486 AL  487 (493)
Q Consensus       486 ~~  487 (493)
                      ++
T Consensus       477 ~~  478 (488)
T TIGR02299       477 AL  478 (488)
T ss_pred             ec
Confidence            75


No 24 
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=100.00  E-value=1.6e-83  Score=678.79  Aligned_cols=417  Identities=43%  Similarity=0.745  Sum_probs=393.5

Q ss_pred             eeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHH
Q 011130           69 LINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIA  148 (493)
Q Consensus        69 ~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela  148 (493)
                      ||||+|+.+.++.+++++||+||+++++++.++.+|++++++.|++||+++.|+++|..+|.++|++++++|+++.++|+
T Consensus         1 ~i~g~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la   80 (482)
T cd07119           1 YIDGEWVEAASGKTRDIINPANGEVIATVPEGTAEDAKRAIAAARRAFDSGEWPHLPAQERAALLFRIADKIREDAEELA   80 (482)
T ss_pred             CCCCEEecCCCCCeEEeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            69999997666788999999999999999999999999999999999975569999999999999999999999999999


Q ss_pred             HHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE---------------------
Q 011130          149 ALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA---------------------  207 (493)
Q Consensus       149 ~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv---------------------  207 (493)
                      +++++|+|||..+++. |+..+++.+++++.+.++..+...+...+...++.++|+|||                     
T Consensus        81 ~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~AL  159 (482)
T cd07119          81 RLETLNTGKTLRESEI-DIDDVANCFRYYAGLATKETGEVYDVPPHVISRTVREPVGVCGLITPWNYPLLQAAWKLAPAL  159 (482)
T ss_pred             HHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCccccCCCCceEEEEEeeeeeEEEEcCCchHHHHHHHHHHHHH
Confidence            9999999999999985 999999999999998887666544433455678999999999                     


Q ss_pred             --------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCC
Q 011130          208 --------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLK  255 (493)
Q Consensus       208 --------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~  255 (493)
                                                      |++|+|++.+.+.++.|+.||++|+|+||||+.+|+.|++.+++ +++
T Consensus       160 aaGN~VilKps~~~p~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~l~~~~~v~~V~fTGs~~~g~~i~~~aa~-~~~  238 (482)
T cd07119         160 AAGNTVVIKPSEVTPLTTIALFELIEEAGLPAGVVNLVTGSGATVGAELAESPDVDLVSFTGGTATGRSIMRAAAG-NVK  238 (482)
T ss_pred             hcCCEEEEECCccccHHHHHHHHHHHHcCCCcCcEEEEecCcHHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHHh-cCC
Confidence                                            99999998777788999999999999999999999999999988 899


Q ss_pred             ceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCcccc
Q 011130          256 PVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGP  335 (493)
Q Consensus       256 pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gp  335 (493)
                      |+++|+|||||+||++|||++.|++.+++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||
T Consensus       239 ~~~lElGGkn~~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~~G~~~~~~~~~gp  318 (482)
T cd07119         239 KVALELGGKNPNIVFADADFETAVDQALNGVFFNAGQVCSAGSRLLVEESIHDKFVAALAERAKKIKLGNGLDADTEMGP  318 (482)
T ss_pred             cEEEECCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEcHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          336 QIDSEQFEKILKYIRSGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       336 li~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      ++++.+++++.++|++++++|+++++||....    ..|+|++|||+.+++++|.++++|+||||++|++|+|+||||++
T Consensus       319 li~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~~~~~g~~~~Ptvl~~~~~~~~i~~eE~FgPvl~v~~~~~~deai~~  398 (482)
T cd07119         319 LVSAEHREKVLSYIQLGKEEGARLVCGGKRPTGDELAKGYFVEPTIFDDVDRTMRIVQEEIFGPVLTVERFDTEEEAIRL  398 (482)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceECCEEEecCCCCChHhhCCCCCceEEEeccCCHHHHHHH
Confidence            99999999999999999999999999997532    25899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      +|+++|||+++|||+|.+.+.++++++++|+|+||++....+.+||||+|+||+|+++|++++++||+.|++++.+
T Consensus       399 ~n~~~~gL~~~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~G~~~l~~~t~~k~v~~~~  474 (482)
T cd07119         399 ANDTPYGLAGAVWTKDIARANRVARRLRAGTVWINDYHPYFAEAPWGGYKQSGIGRELGPTGLEEYQETKHININL  474 (482)
T ss_pred             HhCCCCCceEEEECCCHHHHHHHHHhcCcceEEECCCCCCCCCCCcCCcccCcCCccchHHHHHHHhceEEEEEec
Confidence            9999999999999999999999999999999999997777788999999999999999999999999999998876


No 25 
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=100.00  E-value=1.3e-83  Score=678.48  Aligned_cols=420  Identities=62%  Similarity=1.021  Sum_probs=393.5

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      .++||||+|+.+.++.+++++||+||+++++++.++.+|++.++++|++||+...|+++|.++|.++|++++++|+++.+
T Consensus         4 ~~~~I~g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~   83 (476)
T cd07091           4 TGLFINNEFVDSVSGKTFPTINPATEEVICQVAEADEEDVDAAVKAARAAFETGWWRKMDPRERGRLLNKLADLIERDRD   83 (476)
T ss_pred             ccceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHH
Confidence            47899999997667789999999999999999999999999999999999992225599999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE------------------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA------------------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv------------------  207 (493)
                      +|++++++|+|||..++...|+..+++.++++++++++..+...+...+...++.++|+|||                  
T Consensus        84 ~la~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~  163 (476)
T cd07091          84 ELAALESLDNGKPLEESAKGDVALSIKCLRYYAGWADKIQGKTIPIDGNFLAYTRREPIGVCGQIIPWNFPLLMLAWKLA  163 (476)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCceEEEEEeceeEEEEECCCcCHHHHHHHHHH
Confidence            99999999999998666556999999999999999887766654443455668899999998                  


Q ss_pred             -----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhc
Q 011130          208 -----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKS  252 (493)
Q Consensus       208 -----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~  252 (493)
                                                         |++|+|++++.++++.|..||++|+|+||||+.+|+.|++.++..
T Consensus       164 ~AL~aGN~VvlKps~~~p~~~~~l~~~~~~aglP~g~~~~v~g~~~~~~~~L~~~~~vd~V~fTGs~~~g~~v~~~aa~~  243 (476)
T cd07091         164 PALAAGNTVVLKPAEQTPLSALYLAELIKEAGFPPGVVNIVPGFGPTAGAAISSHMDVDKIAFTGSTAVGRTIMEAAAKS  243 (476)
T ss_pred             HHHHcCCEEEEeCCCCChHHHHHHHHHHHHcCcCCCcEEEEeCCChhHHHHHhcCCCcCEEEEECcHHHHHHHHHHHHhc
Confidence                                               899999997778889999999999999999999999999988865


Q ss_pred             CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCc
Q 011130          253 NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQ  332 (493)
Q Consensus       253 ~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~  332 (493)
                      +++|+++|+|||||+||++|||++.|++.|++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.+++++
T Consensus       244 ~~~~~~lElgG~~~~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rv~V~~~v~~~f~~~L~~~~~~~~~g~p~~~~~~  323 (476)
T cd07091         244 NLKKVTLELGGKSPNIVFDDADLDKAVEWAAFGIFFNQGQCCCAGSRIFVQESIYDEFVEKFKARAEKRVVGDPFDPDTF  323 (476)
T ss_pred             CCceEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhccCCCCcCCcEEEEeHHHHHHHHHHHHHHHhhCCCCCCCCCCCc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHH
Q 011130          333 QGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRS  412 (493)
Q Consensus       333 ~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~  412 (493)
                      +||++++.+++++.++|++++++|+++++||......|+|++|||+.+++++|+++++|+||||++|++|+|++|||+++
T Consensus       324 ~gpli~~~~~~~v~~~i~~a~~~ga~vl~gg~~~~~~~~~~~Ptvl~~v~~~~~~~~eE~FgPvl~v~~~~~~~eai~~~  403 (476)
T cd07091         324 QGPQVSKAQFDKILSYIESGKKEGATLLTGGERHGSKGYFIQPTVFTDVKDDMKIAKEEIFGPVVTILKFKTEDEVIERA  403 (476)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCceECcEEecCCCCCChhhhCCCCCCeEEEeecCCHHHHHHHH
Confidence            99999999999999999999999999999998655578999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          413 NASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       413 n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      |+++|||+++|||+|.+.+.++++++++|+|+||+++...+.+||||+|+||+|+++|.+++++|++.|++++
T Consensus       404 n~~~~gLsa~v~t~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~pfgG~k~SG~G~~~g~~~~~~f~~~k~~~~  476 (476)
T cd07091         404 NDTEYGLAAGVFTKDINKALRVSRALKAGTVWVNTYNVFDAAVPFGGFKQSGFGRELGEEGLEEYTQVKAVTI  476 (476)
T ss_pred             hCCCCCceEEEECCCHHHHHHHHHhcCcceEEECCCCCCCCCCCcCCcccCcCCccchHHHHHHhhceeEEeC
Confidence            9999999999999999999999999999999999987778899999999999999999999999999999853


No 26 
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=100.00  E-value=1.7e-83  Score=677.67  Aligned_cols=420  Identities=39%  Similarity=0.668  Sum_probs=392.9

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      +++||||+|+.+.++++++++||+||+++++++.++.+|+++++++|++||+.+.|+++|..+|.++|++++++|+++.+
T Consensus        20 ~~~~i~g~~~~~~~~~~~~~~nP~tg~~i~~v~~~~~~dv~~av~aA~~a~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~   99 (494)
T PRK09847         20 NRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAE   99 (494)
T ss_pred             cCceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHH
Confidence            36899999998767889999999999999999999999999999999999974469999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE------------------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA------------------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv------------------  207 (493)
                      +|++++++|+|||+.++...|+..+++.++|++++++++.+...+...+...++.++|+|||                  
T Consensus       100 ela~~~~~e~Gk~~~~~~~~ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~  179 (494)
T PRK09847        100 ELALLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLG  179 (494)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCceeEEEecceeEEEEECCCccHHHHHHHHHH
Confidence            99999999999999887656999999999999999888776654443444567899999999                  


Q ss_pred             -----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhc
Q 011130          208 -----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKS  252 (493)
Q Consensus       208 -----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~  252 (493)
                                                         |++|+|++.+.+.++.|+.||++|.|+||||+.+|+.|.+.++..
T Consensus       180 ~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~L~~~~~vd~v~fTGs~~~g~~v~~~aa~~  259 (494)
T PRK09847        180 PALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDS  259 (494)
T ss_pred             HHHHcCCEEEEeCCCCChHHHHHHHHHHHHcCcCcCcEEEEeCCChhHHHHHhcCCCCCEEEEECCHHHHHHHHHHhhhh
Confidence                                               899999997778889999999999999999999999999988733


Q ss_pred             CCCceeEecCCCCceEEccCC-CHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCC
Q 011130          253 NLKPVTLELGGKSPFIVCEDA-DVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGI  331 (493)
Q Consensus       253 ~~~pv~lelgG~~p~iV~~da-Dl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~  331 (493)
                      +++|+++|+|||||.||++|+ |+|.|++.+++++|.|+||.|+++++||||++++|+|+++|+++++++++|+|.++++
T Consensus       260 ~~~~~~lElGGk~~~iV~~daaDl~~Aa~~i~~~~~~~aGQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~  339 (494)
T PRK09847        260 NMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPAT  339 (494)
T ss_pred             CCCeEEEecCCCCeeEEcCCccCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            789999999999999999997 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          332 QQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       332 ~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      .+||++++.+++++.++|++++++| ++++||... ..|+|++|||+.+++++|++++||+||||++|++|+|++|||++
T Consensus       340 ~~gpli~~~~~~~v~~~v~~a~~~G-~i~~gg~~~-~~~~~~~Ptvl~~v~~~~~~~~eE~FgPvl~v~~~~~~~eai~~  417 (494)
T PRK09847        340 TMGTLIDCAHADSVHSFIREGESKG-QLLLDGRNA-GLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQL  417 (494)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHHCC-eEEECCccC-CCCceEeeEEEeCCCCCChHHhCcCcCceEEEEecCCHHHHHHH
Confidence            9999999999999999999999999 999998753 35789999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      +|+++|||+++|||+|.+.+.++++++++|+||||+++...+.+||||+|+||+|+++|.+++++|++.|+|++..
T Consensus       418 ~n~~~~gLsa~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~ft~~k~v~~~~  493 (494)
T PRK09847        418 ANDSQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTIWISL  493 (494)
T ss_pred             HhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCCcccccCccchHHHHHHhhceEEEEEec
Confidence            9999999999999999999999999999999999998777788999999999999999999999999999998754


No 27 
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=100.00  E-value=1.6e-83  Score=678.88  Aligned_cols=418  Identities=50%  Similarity=0.832  Sum_probs=392.0

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHHHHHHHhH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRMTAYERSKIILRFADLLERHN  144 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~-w~~~~~~~R~~iL~~la~~l~~~~  144 (493)
                      .++||||+|+.+.++.+++++||+||++|++++.++.+|+++++++|++||+  . |+++|.++|.++|++++++|++++
T Consensus         8 ~~~~i~g~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~ai~~A~~A~~--~~w~~~~~~~R~~iL~~~a~~l~~~~   85 (484)
T cd07144           8 TGLFINNEFVKSSDGETIKTVNPSTGEVIASVYAAGEEDVDKAVKAARKAFE--SWWSKVTGEERGELLDKLADLVEKNR   85 (484)
T ss_pred             cCcEECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--hhHhcCCHHHHHHHHHHHHHHHHHhH
Confidence            4789999999766678899999999999999999999999999999999998  6 889999999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-----------------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-----------------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-----------------  207 (493)
                      ++|++++++|+|||..++...|+..+++.++++++++++..+...+...+...+..++|+|||                 
T Consensus        86 ~~l~~~~~~e~Gk~~~~~~~~ev~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~  165 (484)
T cd07144          86 DLLAAIEALDSGKPYHSNALGDLDEIIAVIRYYAGWADKIQGKTIPTSPNKLAYTLHEPYGVCGQIIPWNYPLAMAAWKL  165 (484)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCCceEEEEEecceEEEEECcCCCHHHHHHHHH
Confidence            999999999999998775445999999999999999988866544433344568899999999                 


Q ss_pred             ------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhh
Q 011130          208 ------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAK  251 (493)
Q Consensus       208 ------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~  251 (493)
                                                          |++|+|++.+.++++.|+.||++|+|.||||+.+|+.|++.++.
T Consensus       166 ~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~~~vd~V~fTGS~~~g~~i~~~a~~  245 (484)
T cd07144         166 APALAAGNTVVIKPAENTPLSLLYFANLVKEAGFPPGVVNIIPGYGAVAGSALAEHPDVDKIAFTGSTATGRLVMKAAAQ  245 (484)
T ss_pred             HHHHHcCCEEEEECCccchHHHHHHHHHHHHhCcCCCcEEEEecCCchHHHHHhcCCCcCEEEEECcHHHHHHHHHHHHh
Confidence                                                99999999777889999999999999999999999999999888


Q ss_pred             cCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhh-cccCCCCCCC
Q 011130          252 SNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMK-RVVGDPFKGG  330 (493)
Q Consensus       252 ~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~-~~vg~p~~~~  330 (493)
                       ++||+++|+|||||+||++|||++.|++.+++++|+|+||.|+++++||||++++|+|+++|++++.+ +++|+|.+++
T Consensus       246 -~~~~~~lElGGk~p~iV~~dADl~~Aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~~G~p~~~~  324 (484)
T cd07144         246 -NLKAVTLECGGKSPALVFEDADLDQAVKWAAAGIMYNSGQNCTATSRIYVQESIYDKFVEKFVEHVKQNYKVGSPFDDD  324 (484)
T ss_pred             -cCCeEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCceEEEcHHHHHHHHHHHHHHHHhhCCcCCCCCCC
Confidence             89999999999999999999999999999999999999999999999999999999999999999985 8999999999


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC---CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHH
Q 011130          331 IQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG---AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDE  407 (493)
Q Consensus       331 ~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~---~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~e  407 (493)
                      +++||++++.+++++.++|++++++|+++++||....   ..|+|++|||+.+++++|.+++||+||||++|++|+|++|
T Consensus       325 ~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FgPvl~v~~~~~~~e  404 (484)
T cd07144         325 TVVGPQVSKTQYDRVLSYIEKGKKEGAKLVYGGEKAPEGLGKGYFIPPTIFTDVPQDMRIVKEEIFGPVVVISKFKTYEE  404 (484)
T ss_pred             CcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCcccCCCCceECCEEEeCCCCCCchhhCCCCCceEEEeccCCHHH
Confidence            9999999999999999999999999999999997543   3689999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          408 VIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       408 ai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      ||+++|+++|||+++|||+|.+.+.++++++++|+|+||+.+..++.+||||+|+||+|+++|.+++++|++.|+|+++
T Consensus       405 ai~~~n~~~~gLsa~i~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~~t~~k~v~~~  483 (484)
T cd07144         405 AIKKANDTTYGLAAAVFTKDIRRAHRVARELEAGMVWINSSNDSDVGVPFGGFKMSGIGRELGEYGLETYTQTKAVHIN  483 (484)
T ss_pred             HHHHHhCCCCCceEEEECCCHHHHHHHHHhcCcCEEEECCCCCCCCCCCcCCcccCcCCCCchHHHHHHhhceEEEEEe
Confidence            9999999999999999999999999999999999999999877778899999999999999999999999999999864


No 28 
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=100.00  E-value=1.8e-83  Score=677.32  Aligned_cols=415  Identities=34%  Similarity=0.477  Sum_probs=387.2

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      ++||||+|+.+.++++++++||+||++|++++.++.+|+++++++|++||+  .|+++|..+|.++|++++++|+++.++
T Consensus         2 ~~~i~g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~e   79 (478)
T cd07085           2 KLFINGEWVESKTTEWLDVYNPATGEVIARVPLATAEEVDAAVAAAKAAFP--AWSATPVLKRQQVMFKFRQLLEENLDE   79 (478)
T ss_pred             CceECCEEecCCCCCeEEeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999876678899999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCC-CCCceeEEEeeeeeeE------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPA-DGPYHVQTLHEPIGVA------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~-~~~~~~~~~~~PlGVv------------------  207 (493)
                      |++++++|+|||+.+++. |+..+++.++|++...+...+...+. ..+...+..++|+|||                  
T Consensus        80 l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~i~  158 (478)
T cd07085          80 LARLITLEHGKTLADARG-DVLRGLEVVEFACSIPHLLKGEYLENVARGIDTYSYRQPLGVVAGITPFNFPAMIPLWMFP  158 (478)
T ss_pred             HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhCCeecccCCCCceeEEEEecceEEEEECCCChHHHHHHHHHH
Confidence            999999999999999985 99999999999998777666654432 2244568899999999                  


Q ss_pred             -----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhc
Q 011130          208 -----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKS  252 (493)
Q Consensus       208 -----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~  252 (493)
                                                         |++|+|++ +.+.+..|+.||+|+.|+||||+.+|+.|++.+++ 
T Consensus       159 ~ALaaGN~VvlKps~~tp~~~~~l~~~l~~aGlP~gvv~~v~g-~~~~~~~L~~~~~v~~V~fTGs~~~g~~i~~~aa~-  236 (478)
T cd07085         159 MAIACGNTFVLKPSERVPGAAMRLAELLQEAGLPDGVLNVVHG-GKEAVNALLDHPDIKAVSFVGSTPVGEYIYERAAA-  236 (478)
T ss_pred             HHHhcCCEEEEECCCcCcHHHHHHHHHHHHhCCCCCcEEEEec-CHHHHHHHhcCCCcCEEEEECCHHHHHHHHHHHhh-
Confidence                                               89999998 45678899999999999999999999999999887 


Q ss_pred             CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCc
Q 011130          253 NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQ  332 (493)
Q Consensus       253 ~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~  332 (493)
                      ++||+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|++++.++++|+|.+++++
T Consensus       237 ~~~~~~lElgGk~p~iV~~dADl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~~~f~~~L~~~~~~l~~G~p~~~~~~  316 (478)
T cd07085         237 NGKRVQALGGAKNHAVVMPDADLEQTANALVGAAFGAAGQRCMALSVAVAVGDEADEWIPKLVERAKKLKVGAGDDPGAD  316 (478)
T ss_pred             cCCcEEecCCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEeHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHH
Q 011130          333 QGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEV  408 (493)
Q Consensus       333 ~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~ea  408 (493)
                      +||++++.+++++.++|++++++|+++++||....    .+|+|++|||+.+++++|.++++|+||||++|++|+|+|||
T Consensus       317 ~gpli~~~~~~~v~~~i~~a~~~Ga~~l~gg~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~dea  396 (478)
T cd07085         317 MGPVISPAAKERIEGLIESGVEEGAKLVLDGRGVKVPGYENGNFVGPTILDNVTPDMKIYKEEIFGPVLSIVRVDTLDEA  396 (478)
T ss_pred             cCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCcCCCCeEEcCEEEecCCCCChhhhCcCcCCeEEEEEeCCHHHH
Confidence            99999999999999999999999999999996432    36899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC-CCCCCccCCCCCCCC--CcchHHHHHhhhhceEEEE
Q 011130          409 IQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF-DAAIPFGGYKQSGQG--REKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       409 i~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~-~~~~pfGG~~~SG~G--~~~g~~~l~~~~~~k~v~~  485 (493)
                      |+++|+++|||+++|||+|.+.++++++++++|+||||++... .+.+||||+|+||+|  +++|.+++++|++.|+|++
T Consensus       397 i~~~N~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~~PfgG~k~SG~G~~~~~g~~~~~~~~~~k~v~~  476 (478)
T cd07085         397 IAIINANPYGNGAAIFTRSGAAARKFQREVDAGMVGINVPIPVPLAFFSFGGWKGSFFGDLHFYGKDGVRFYTQTKTVTS  476 (478)
T ss_pred             HHHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCCCCcccccCCCCcCChHHHHHHhcceEEEEE
Confidence            9999999999999999999999999999999999999986443 467899999999999  5789999999999999976


Q ss_pred             e
Q 011130          486 A  486 (493)
Q Consensus       486 ~  486 (493)
                      .
T Consensus       477 ~  477 (478)
T cd07085         477 R  477 (478)
T ss_pred             e
Confidence            4


No 29 
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=100.00  E-value=6.2e-83  Score=672.83  Aligned_cols=414  Identities=33%  Similarity=0.555  Sum_probs=388.6

Q ss_pred             ceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 011130           68 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEI  147 (493)
Q Consensus        68 ~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~el  147 (493)
                      +||||+|+.+. +.+++++||+||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++.++|
T Consensus         1 ~~i~g~~~~~~-~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el   77 (478)
T cd07086           1 GVIGGEWVGSG-GETFTSRNPANGEPIARVFPASPEDVEAAVAAAREAFK--EWRKVPAPRRGEIVRQIGEALRKKKEAL   77 (478)
T ss_pred             CcCCCEEecCC-CCEEeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            58999999764 67899999999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             HHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE-------------------
Q 011130          148 AALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA-------------------  207 (493)
Q Consensus       148 a~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv-------------------  207 (493)
                      ++++++|+|||+.++.. |+..+++.++|++.+.+++.+...+.. .+...++.++|+|||                   
T Consensus        78 a~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~  156 (478)
T cd07086          78 GRLVSLEMGKILPEGLG-EVQEMIDICDYAVGLSRMLYGLTIPSERPGHRLMEQWNPLGVVGVITAFNFPVAVPGWNAAI  156 (478)
T ss_pred             HHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEEecceeEEEECCCCcHHHHHHHHHHH
Confidence            99999999999999885 999999999999998888776544322 234567899999998                   


Q ss_pred             --------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHH
Q 011130          208 --------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLA  249 (493)
Q Consensus       208 --------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a  249 (493)
                                                            |++|+|++.+. +++.|..||++|+|+||||+++|+.|++.+
T Consensus       157 ALaaGN~VIlKps~~~p~~~~~l~~~~~~al~~~glP~gvv~~v~g~~~-~~~~L~~~~~vd~v~fTGs~~~g~~i~~~a  235 (478)
T cd07086         157 ALVCGNTVVWKPSETTPLTAIAVTKILAEVLEKNGLPPGVVNLVTGGGD-GGELLVHDPRVPLVSFTGSTEVGRRVGETV  235 (478)
T ss_pred             HHHcCCeEEEECCCcchHHHHHHHHHHHHhhhccCCCccceEEEecCch-hHHHHhcCCCCCEEEEECcHHHHHHHHHHH
Confidence                                                  89999998654 889999999999999999999999999999


Q ss_pred             hhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCC
Q 011130          250 AKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKG  329 (493)
Q Consensus       250 ~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~  329 (493)
                      ++ +++|+++|+|||||+||++|||++.|++.|++++|.|+||.|+++++||||++++|+|+++|+++++++++|+|.++
T Consensus       236 a~-~~~~~~lElGG~~p~iV~~dAdl~~Aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~  314 (478)
T cd07086         236 AR-RFGRVLLELGGNNAIIVMDDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESVYDEFLERLVKAYKQVRIGDPLDE  314 (478)
T ss_pred             hc-cCCcEEeecCCCCcEEEcCCCCHHHHHHHHHHHHHhccCCCCcCCeEEEEcHHHHHHHHHHHHHHHHhCCcCCCCCC
Confidence            88 89999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCC--CCceeeceEEecCCCCccccccccccceEEEEEeCCHHH
Q 011130          330 GIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGA--KGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDE  407 (493)
Q Consensus       330 ~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~--~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~e  407 (493)
                      ++++||++++.+++++.++|++++++|+++++||.....  .|+|++|||+.+++++|+++++|+||||++|++|+|+||
T Consensus       315 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPVl~v~~~~~~de  394 (478)
T cd07086         315 GTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGKRIDGGEPGNYVEPTIVTGVTDDARIVQEETFAPILYVIKFDSLEE  394 (478)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCeEEccEEecCCCCCChhhcCCCcCCEEEEEEeCCHHH
Confidence            999999999999999999999999999999999976443  589999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEecCCHHHHHHHHHh--cceeEEEECCcCC-CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          408 VIQRSNASQYGLAAGVFTHNLDTANTLMRA--LRVGSVWINCFDV-FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       408 ai~~~n~~~~gl~a~v~t~d~~~~~~~~~~--l~~g~V~VN~~~~-~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      ||+++|+++|||+++|||+|.+.+++++++  +++|+||||++.. ..+.+||||+|.||+|+++|.+++++|++.|+|+
T Consensus       395 ai~~~n~~~~gL~a~v~t~d~~~a~~~~~~~~~~~G~v~iN~~~~~~~~~~PfgG~~~SG~G~~~g~~~~~~f~~~k~i~  474 (478)
T cd07086         395 AIAINNDVPQGLSSSIFTEDLREAFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKETGGGRESGSDAWKQYMRRSTCT  474 (478)
T ss_pred             HHHHHhCCCCcceEEEEcCCHHHHHHHHhcCcccceeEEECCCCCCCCCCCCCCCcccccCCccchHHHHHHhhceEEEE
Confidence            999999999999999999999999999999  9999999998754 3578999999999999999999999999999998


Q ss_pred             EeC
Q 011130          485 TAL  487 (493)
Q Consensus       485 ~~~  487 (493)
                      +.+
T Consensus       475 ~~~  477 (478)
T cd07086         475 INY  477 (478)
T ss_pred             EeC
Confidence            763


No 30 
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=100.00  E-value=4.6e-83  Score=677.61  Aligned_cols=423  Identities=29%  Similarity=0.417  Sum_probs=389.7

Q ss_pred             ccccceeCCEeeeCCCCCeeeeecCCC-CCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHH-
Q 011130           64 DYTQLLINGQFVDSASGKTFPTLDPRT-GDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLE-  141 (493)
Q Consensus        64 ~~~~~~I~G~~~~~~~~~~~~v~~P~t-g~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~-  141 (493)
                      .++++||||+|+.+ ++.+++++||.| |+++++++.++.+|+++||++|++||+  .|+++|..+|.++|++++++|+ 
T Consensus        30 ~~~~~~i~G~~~~~-~~~~~~~~nP~t~g~~i~~~~~~~~~~v~~av~~A~~a~~--~W~~~~~~~R~~~L~k~a~~l~~  106 (533)
T TIGR01236        30 IEIPLVIGGEEVMG-SGERIDQVQPHNHQAVLAKATNATEEDAAKAVEAALDAKK--DWSALPFYDRAAIFLKAADLLSG  106 (533)
T ss_pred             eeeceeECCEEecC-CCCEEEEECCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHh
Confidence            56788999999974 567899999997 899999999999999999999999999  9999999999999999999999 


Q ss_pred             HhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccC-CCCCCceeEEEeeee-eeE------------
Q 011130          142 RHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTA-PADGPYHVQTLHEPI-GVA------------  207 (493)
Q Consensus       142 ~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~-~~~~~~~~~~~~~Pl-GVv------------  207 (493)
                      +++++|++++++|+|||+.+++..++..+++.++|++.+++++.+... +...+...++.++|+ |||            
T Consensus       107 ~~~~~la~~~~~e~GK~~~~a~~e~v~~~i~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~PwN~P~~~  186 (533)
T TIGR01236       107 PYREEILAATMLGQSKNVYQAEIDAVAELIDFFRFNVKYARELYEQQPSESAPGEWNRTDYRPLEGFVYAISPFNFTAIA  186 (533)
T ss_pred             hcHHHHHHHHHHHcCCcHHHHhHhHHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEecCCCEEEEEeCCchHHHH
Confidence            599999999999999999998763499999999999999887765433 222344568889999 998            


Q ss_pred             ----------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHH
Q 011130          208 ----------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQ  247 (493)
Q Consensus       208 ----------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~  247 (493)
                                                              |++|+|+|.+.++++.|+.||+|++|+||||+++|+.|++
T Consensus       187 ~~~~~a~ALaGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~g~~Lv~~p~v~~V~FTGS~~~G~~i~~  266 (533)
T TIGR01236       187 GNLPGAPALMGNTVIWKPSITATLSNYLTMRILEEAGLPPGVINFVPGDGFAVSDVVLADPRLAGIHFTGSTATFKHLWK  266 (533)
T ss_pred             HHHHHHHHHhCCeEEEECCCcCCHHHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHHhcCCCcCEEEEECCHHHHHHHHH
Confidence                                                    9999999977788999999999999999999999999999


Q ss_pred             HHhhcCCC------ceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhc
Q 011130          248 LAAKSNLK------PVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKR  321 (493)
Q Consensus       248 ~a~~~~~~------pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~  321 (493)
                      .+++ +++      ++++|+|||||+||++|||+|.|++.+++++|.|+||.|++++|||||+++||+|+++|+++++++
T Consensus       267 ~aa~-~l~~~~~~~~v~lElGGknp~IV~~dADl~~Aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l  345 (533)
T TIGR01236       267 WVAS-NLDRYHNFPRIVGETGGKDFHVVHPSADIDHAVTATIRGAFEYQGQKCSAASRLYVPHSVWPRFKDELLAELAEV  345 (533)
T ss_pred             HHHh-hccccccCCcEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhhCCCCCcCCeeEEEchhHHHHHHHHHHHHHhcC
Confidence            9988 776      399999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCC--CEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEE
Q 011130          322 VVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGG--AKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSI  399 (493)
Q Consensus       322 ~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~g--a~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v  399 (493)
                      ++|+|.|+++++||++++.+++++.++|++++++|  +++++||......|+|++|||+.+++++|++++||+||||++|
T Consensus       346 ~~G~p~d~~t~~Gpli~~~~~~~v~~~i~~a~~~Ga~a~vl~GG~~~~~~G~~~~PTvl~~~~~d~~i~~eE~FGPVl~v  425 (533)
T TIGR01236       346 KVGDPDDFSNFMGAVIDERSFVKNVKYIERAKGDPAELTILYGGKYDDSEGYFVEPTVILSKDPTDPLMVEEIFGPVLTV  425 (533)
T ss_pred             CcCCCCCCCCcccccCCHHHHHHHHHHHHHHHhcCCceEEEeCCCcCCCCCeEEeeEEEecCCCCChhhcccCCCCeEEE
Confidence            99999999999999999999999999999999986  7999999764446899999999999999999999999999999


Q ss_pred             EEeCC--HHHHHHHH-HcCCCCcEEEEecCCHHHHHHHHHhcc--eeEEEECCcCCC--CCCCCccCCCCCCCC-CcchH
Q 011130          400 LKYKD--LDEVIQRS-NASQYGLAAGVFTHNLDTANTLMRALR--VGSVWINCFDVF--DAAIPFGGYKQSGQG-REKGS  471 (493)
Q Consensus       400 ~~~~~--~~eai~~~-n~~~~gl~a~v~t~d~~~~~~~~~~l~--~g~V~VN~~~~~--~~~~pfGG~~~SG~G-~~~g~  471 (493)
                      ++|+|  ++|||+++ |+++|||+++|||+|.+.+.+++++++  +|+||||.....  .+.+||||+|.||+| +++|.
T Consensus       426 ~~~~~~~~~eai~~~~n~~~~gL~a~Vft~d~~~a~~~~~~l~~~~G~v~IN~~~~~~~~~~~PfGG~k~SG~G~~~~g~  505 (533)
T TIGR01236       426 YVYPDDKYKEILDVVDSTSRYGLTGAVFAKDRQAILEADKRLRFAAGNFYINDKPTGAVVGQQPFGGARGSGTNDKAGGP  505 (533)
T ss_pred             EEeCCCCHHHHHHHHhcCCCcCceEEEEeCCHHHHHHHHHHhhhcCcEEEECCCCCCCCCCCCCCCCcccccCCcccCCH
Confidence            99998  59999999 889999999999999999999999977  999999976543  367899999999998 99999


Q ss_pred             HHHHhhhhceEEEEeCCCC
Q 011130          472 YSLSNYLQVKAVVTALKNP  490 (493)
Q Consensus       472 ~~l~~~~~~k~v~~~~~~~  490 (493)
                      +++++|++.|++++....+
T Consensus       506 ~~l~~f~~~k~v~~~~~~~  524 (533)
T TIGR01236       506 LNLLRWTSARSIKETFVPL  524 (533)
T ss_pred             HHHHHhcceEEEEEEcccc
Confidence            9999999999998887554


No 31 
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate.  Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid.  The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=100.00  E-value=9.9e-83  Score=670.17  Aligned_cols=411  Identities=29%  Similarity=0.498  Sum_probs=383.0

Q ss_pred             eeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHH
Q 011130           69 LINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIA  148 (493)
Q Consensus        69 ~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela  148 (493)
                      +|||+|+.+  +++++++||.||+++++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|++++++|+
T Consensus         2 ~i~g~~~~~--~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~a~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la   77 (474)
T cd07130           2 VYDGEWGGG--GGVVTSISPANGEPIARVRQATPEDYESTIKAAQEAFK--EWRDVPAPKRGEIVRQIGDALRKKKEALG   77 (474)
T ss_pred             eECCEEecC--CCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999974  57899999999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE--------------------
Q 011130          149 ALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA--------------------  207 (493)
Q Consensus       149 ~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv--------------------  207 (493)
                      +++++|+|||+.++.. |+..+++.++|++.+.+.+.+...+.. .+...++.++|+|||                    
T Consensus        78 ~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~A  156 (474)
T cd07130          78 KLVSLEMGKILPEGLG-EVQEMIDICDFAVGLSRQLYGLTIPSERPGHRMMEQWNPLGVVGVITAFNFPVAVWGWNAAIA  156 (474)
T ss_pred             HHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHhHHHhcCccccCCCCCceEEEEEecceeEEEEccCCCHHHHHHHHhhHH
Confidence            9999999999999874 999999999999988776665543322 234567889999999                    


Q ss_pred             -------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHh
Q 011130          208 -------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAA  250 (493)
Q Consensus       208 -------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~  250 (493)
                                                           |++|+|++. .+.++.|+.||+||+|+||||+++|+.|++.++
T Consensus       157 LaaGN~VvlKps~~~p~~~~~l~~l~~~~~~~aglP~gv~~~v~g~-~~~~~~L~~~~~vd~V~fTGs~~~g~~i~~~aa  235 (474)
T cd07130         157 LVCGNVVVWKPSPTTPLTAIAVTKIVARVLEKNGLPGAIASLVCGG-ADVGEALVKDPRVPLVSFTGSTAVGRQVGQAVA  235 (474)
T ss_pred             HHcCCeEEeeCCccCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCC-hhHHHHHhcCCCCCEEEEECchHHHHHHHHHHH
Confidence                                                 899999984 457899999999999999999999999999988


Q ss_pred             hcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCC
Q 011130          251 KSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGG  330 (493)
Q Consensus       251 ~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~  330 (493)
                      + +++|+++|+|||||+||++|||+|.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|||.+++
T Consensus       236 ~-~~~~~~lElGGk~p~iV~~dadl~~Aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~~g~p~~~~  314 (474)
T cd07130         236 A-RFGRSLLELGGNNAIIVMEDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESIYDEVLERLKKAYKQVRIGDPLDDG  314 (474)
T ss_pred             h-cCCCEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCeEEEEcHhHHHHHHHHHHHHHhcCCcCCCCCCC
Confidence            8 899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHH
Q 011130          331 IQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQ  410 (493)
Q Consensus       331 ~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~  410 (493)
                      +++||++++.+++++.++|++++++|+++++||...+..|+|++|||+.++.+ |++++||+||||++|++|+|++|||+
T Consensus       315 ~~~Gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~~~~-~~i~~eE~FGPvl~v~~~~~~~eai~  393 (474)
T cd07130         315 TLVGPLHTKAAVDNYLAAIEEAKSQGGTVLFGGKVIDGPGNYVEPTIVEGLSD-APIVKEETFAPILYVLKFDTLEEAIA  393 (474)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCCCeEEccEEEecCCC-CHHHhCCCcCCeEEEEEeCCHHHHHH
Confidence            99999999999999999999999999999999986555689999999998766 99999999999999999999999999


Q ss_pred             HHHcCCCCcEEEEecCCHHHHHHHHHh--cceeEEEECCcCC-CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          411 RSNASQYGLAAGVFTHNLDTANTLMRA--LRVGSVWINCFDV-FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       411 ~~n~~~~gl~a~v~t~d~~~~~~~~~~--l~~g~V~VN~~~~-~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      ++|+++|||+++|||+|.+.+++++++  +++|+||||+.+. ..+.+||||+|+||+|+++|.+++++|++.|++++.+
T Consensus       394 ~aN~~~~gL~a~v~t~d~~~a~~~~~~~~~~~g~v~iN~~~~~~~~~~PfgG~k~SG~G~~~g~~~~~~f~~~k~~~~~~  473 (474)
T cd07130         394 WNNEVPQGLSSSIFTTDLRNAFRWLGPKGSDCGIVNVNIGTSGAEIGGAFGGEKETGGGRESGSDAWKQYMRRSTCTINY  473 (474)
T ss_pred             HHhCCCCCceEEEEcCCHHHHHHHHhhcCcceEEEEEcCCCCCCCCCCCcCccccccCCccchHHHHHHHhheEEEEEec
Confidence            999999999999999999999999987  8999999998654 4578999999999999999999999999999988753


No 32 
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=100.00  E-value=8.4e-83  Score=671.48  Aligned_cols=413  Identities=40%  Similarity=0.652  Sum_probs=386.6

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCC-CCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPR-TGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHN  144 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~-tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~  144 (493)
                      +++||||+|+.+.  ..++++||. ||+++++++.++.+|++++|++|++||+  .|++++.++|.++|++++++|++|.
T Consensus         1 ~~~~i~g~~~~~~--~~~~v~~P~~~~~~i~~~~~~~~~~v~~av~~A~~A~~--~W~~~~~~~R~~~L~~~a~~l~~~~   76 (473)
T cd07097           1 YRNYIDGEWVAGG--DGEENRNPSDTSDVVGKYARASAEDADAAIAAAAAAFP--AWRRTSPEARADILDKAGDELEARK   76 (473)
T ss_pred             CCceECCEEecCC--CCceeECCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhH
Confidence            3679999999753  346999999 5999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE----------------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA----------------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv----------------  207 (493)
                      ++|++++++|+|||+.+++. |+..+++.++|++...++..+...+.. .+...++.++|+|||                
T Consensus        77 ~ela~~~~~e~Gk~~~~a~~-ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~P~N~Pl~~~~~~  155 (473)
T cd07097          77 EELARLLTREEGKTLPEARG-EVTRAGQIFRYYAGEALRLSGETLPSTRPGVEVETTREPLGVVGLITPWNFPIAIPAWK  155 (473)
T ss_pred             HHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEEEeeeeEEEEcccChHHHHHHHH
Confidence            99999999999999999986 999999999999998887766543322 345568899999999                


Q ss_pred             -------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHh
Q 011130          208 -------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAA  250 (493)
Q Consensus       208 -------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~  250 (493)
                                                           |++|+|++++.+++..|+.|++|++|+||||+.+|+.|++.++
T Consensus       156 i~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa  235 (473)
T cd07097         156 IAPALAYGNTVVFKPAELTPASAWALVEILEEAGLPAGVFNLVMGSGSEVGQALVEHPDVDAVSFTGSTAVGRRIAAAAA  235 (473)
T ss_pred             HHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHcCCCCcceEEeccCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHh
Confidence                                                 9999999977778999999999999999999999999999998


Q ss_pred             hcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCC
Q 011130          251 KSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGG  330 (493)
Q Consensus       251 ~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~  330 (493)
                      + ++||+++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||++++|+|+++|+++++++++|+|.+++
T Consensus       236 ~-~~~~~~lElGGk~~~iV~~dadl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~  314 (473)
T cd07097         236 A-RGARVQLEMGGKNPLVVLDDADLDLAVECAVQGAFFSTGQRCTASSRLIVTEGIHDRFVEALVERTKALKVGDALDEG  314 (473)
T ss_pred             c-cCCcEEEECCCCCeeEECCCCCHHHHHHHHHHHHHhccCCCCcCCeeEEEehhHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            8 899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC--CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHH
Q 011130          331 IQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG--AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEV  408 (493)
Q Consensus       331 ~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~--~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~ea  408 (493)
                      +++|||+++.+++++.++|++++++|+++++||....  +.|+|++|||+.++++++++++||+||||++|++|+|++||
T Consensus       315 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~ea  394 (473)
T cd07097         315 VDIGPVVSERQLEKDLRYIEIARSEGAKLVYGGERLKRPDEGYYLAPALFAGVTNDMRIAREEIFGPVAAVIRVRDYDEA  394 (473)
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCCCeEEeeEEeccCCCCChhhhCCCcCceEEEeccCCHHHH
Confidence            9999999999999999999999999999999997543  35899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC-CCCCCCccCCCCCCCC-CcchHHHHHhhhhceEEE
Q 011130          409 IQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV-FDAAIPFGGYKQSGQG-REKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       409 i~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~-~~~~~pfGG~~~SG~G-~~~g~~~l~~~~~~k~v~  484 (493)
                      |+++|+++|||+++|||+|.+.+.++++++++|+||||+++. ..+.+||||+|.||+| +++|.+++++|++.|+|+
T Consensus       395 i~~~n~~~~gL~~~v~t~d~~~a~~~~~~l~~g~v~iN~~~~~~~~~~PfGG~~~SG~G~~~~g~~~l~~f~~~k~v~  472 (473)
T cd07097         395 LAIANDTEFGLSAGIVTTSLKHATHFKRRVEAGVVMVNLPTAGVDYHVPFGGRKGSSYGPREQGEAALEFYTTIKTVY  472 (473)
T ss_pred             HHHHhCCCCCceEEEECCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCCCCcccccCcccCCcHHHHHHhhceeEEe
Confidence            999999999999999999999999999999999999998654 3478999999999999 899999999999999985


No 33 
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=100.00  E-value=9.2e-83  Score=670.56  Aligned_cols=410  Identities=43%  Similarity=0.759  Sum_probs=386.7

Q ss_pred             eeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHH
Q 011130           69 LINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIA  148 (493)
Q Consensus        69 ~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela  148 (493)
                      ||||+|+.+.++++++++||+||+++++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|++++++|+
T Consensus         1 ~i~g~~~~~~~~~~~~~~nP~t~~~i~~~~~~~~~~v~~av~~a~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la   78 (467)
T TIGR01804         1 FIDGEWVEASAGETREIINPANQEVIATVAEATREDVERAIAAARRAQG--EWASMTPEERGRILRRIAELIRERNEELA   78 (467)
T ss_pred             CCCCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            6999999766678999999999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE---------------------
Q 011130          149 ALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA---------------------  207 (493)
Q Consensus       149 ~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv---------------------  207 (493)
                      +++++|+|||..++...|+..+++.++++++.+++..+...+...+...+..++|+|||                     
T Consensus        79 ~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL  158 (467)
T TIGR01804        79 KLETLDTGKTLEETSVADMDDIADVFEFFAGLADKDGGEIIPLPIPSFSYTIREPLGVCVGIGAWNYPLQIASWKIAPAL  158 (467)
T ss_pred             HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHhCCccccCCCCceEEEEEeeeeEEEEECCCchHHHHHHHHHHHHH
Confidence            99999999999998445999999999999998888766544433334567899999998                     


Q ss_pred             --------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCC
Q 011130          208 --------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLK  255 (493)
Q Consensus       208 --------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~  255 (493)
                                                      |++|+|++.+.++++.|+.||++|+|+||||+++|+.|++.+++ ++|
T Consensus       159 aaGN~VvlKps~~tp~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~~~v~~V~fTGs~~~g~~v~~~a~~-~l~  237 (467)
T TIGR01804       159 AAGNAMVFKPSEITPLTALKVAELMEEAGLPDGVFNVVLGKGAEVGEPLVNHKDVAKVSFTGGVPTGKKIMAAAAD-HLK  237 (467)
T ss_pred             hcCCEEEeeCCccCcHHHHHHHHHHHHcCcCcCcEEEEeCCcHHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHHh-cCC
Confidence                                            99999998767889999999999999999999999999999988 899


Q ss_pred             ceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCcccc
Q 011130          256 PVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGP  335 (493)
Q Consensus       256 pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gp  335 (493)
                      |+++|+|||||+||++|||++.|++.+++++|.++||.|+++++||||++++|+|+++|+++++++++|+|.++++++||
T Consensus       238 ~~~lElGG~~~~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gp  317 (467)
T TIGR01804       238 HVTMELGGKSPLIVFDDADLELAVDQAMNGNFFSAGQVCSNGTRVFVHNKIKEKFEARLVERTKRIKLGDGFDEATEMGP  317 (467)
T ss_pred             cEEEecCCCCeeEECCCCCHHHHHHHHHHHHHHhcCCCCCCCCEEEEcHHHHHHHHHHHHHHHHhCCCCCCCCCCCccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          336 QIDSEQFEKILKYIRSGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       336 li~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      ++++.+++++.++|++++++|+++++||....    ..|+|++|||+.+++++|++++||+||||++|++|+|.||||++
T Consensus       318 li~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~deai~~  397 (467)
T TIGR01804       318 LISAEHRDKVESYIEKGKEEGATLACGGKRPEREGLQNGFFIEPTVFTDCTDDMTIVREEIFGPVMTVLTFSSEDEVIAR  397 (467)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCeEEeeEEEeCCCCCChHHhCCCCCceEEEEecCCHHHHHHH
Confidence            99999999999999999999999999997543    25899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhce
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVK  481 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k  481 (493)
                      +|+++|||+++|||+|.+++.++++++++|+||||+++...+.+||||+|+||+|+++|.+++++||+.|
T Consensus       398 ~n~~~~gLsa~i~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~G~~~g~~~~~~~~~~~  467 (467)
T TIGR01804       398 ANDTIYGLAAGVFTADLGRAHRVANQLKAGTVWINDFHPYPAEAPWGGYKQSGIGRENGKAGLAEYTEVK  467 (467)
T ss_pred             HhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcccCccCCCChHHHHHHHhccC
Confidence            9999999999999999999999999999999999998777778999999999999999999999999875


No 34 
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily.  Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans,  is a mitochondrial  homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=100.00  E-value=1.1e-82  Score=675.00  Aligned_cols=419  Identities=27%  Similarity=0.413  Sum_probs=385.8

Q ss_pred             ccccceeCCEeeeCCCCCeeeeecCCC-CCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 011130           64 DYTQLLINGQFVDSASGKTFPTLDPRT-GDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLER  142 (493)
Q Consensus        64 ~~~~~~I~G~~~~~~~~~~~~v~~P~t-g~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~  142 (493)
                      ...++||||+|+.  ++.+++++||+| |+++++++.++.+|++++|++|++||+  .|+++|..+|.++|++++++|++
T Consensus        31 ~~~~~~i~G~~~~--~~~~~~v~~P~~tg~~l~~~~~~~~~~v~~av~~A~~A~~--~W~~~~~~~R~~~L~~~a~~l~~  106 (522)
T cd07123          31 VEIPLVIGGKEVR--TGNTGKQVMPHDHAHVLATYHYADAALVEKAIEAALEARK--EWARMPFEDRAAIFLKAADLLSG  106 (522)
T ss_pred             cccCeeECCEEcC--CCCeEEEECCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHh
Confidence            3467899999996  467899999995 999999999999999999999999999  99999999999999999999996


Q ss_pred             -hHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeee-eeE------------
Q 011130          143 -HNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPI-GVA------------  207 (493)
Q Consensus       143 -~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~Pl-GVv------------  207 (493)
                       ++++|++++++|+|||..++...|+..+++.++|++.+++++.+...+.. .+...++.++|+ |||            
T Consensus       107 ~~~~ela~~~~~e~Gk~~~~a~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~PwNfP~~~  186 (522)
T cd07123         107 KYRYELNAATMLGQGKNVWQAEIDAACELIDFLRFNVKYAEELYAQQPLSSPAGVWNRLEYRPLEGFVYAVSPFNFTAIG  186 (522)
T ss_pred             hCHHHHHHHHHHhcCCCHHHHhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEecCCceEEEECCcccHHHH
Confidence             89999999999999999988655888999999999998887765433322 134568899998 998            


Q ss_pred             ----------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHH
Q 011130          208 ----------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQ  247 (493)
Q Consensus       208 ----------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~  247 (493)
                                                              |++|+|+|.+.++++.|+.||+|++|+||||+++|+.|++
T Consensus       187 ~~~~~~palaGN~VVlKPs~~tp~~~~~l~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~~~~v~~V~FTGS~~~G~~i~~  266 (522)
T cd07123         187 GNLAGAPALMGNVVLWKPSDTAVLSNYLVYKILEEAGLPPGVINFVPGDGPVVGDTVLASPHLAGLHFTGSTPTFKSLWK  266 (522)
T ss_pred             HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHcCcCCCcEEEEecCchHHHHHHhcCCCcCEEEEECCHHHHHHHHH
Confidence                                                    9999999977778999999999999999999999999999


Q ss_pred             HHhhcCCC------ceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhc
Q 011130          248 LAAKSNLK------PVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKR  321 (493)
Q Consensus       248 ~a~~~~~~------pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~  321 (493)
                      .+++ +++      ++++|||||||+||++|||+|.|++.+++++|.|+||.|++++|||||+++||+|+++|++++.++
T Consensus       267 ~aa~-~l~~~~~~~~v~lElGGkn~~IV~~dAdl~~Aa~~i~~~~f~~aGQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l  345 (522)
T cd07123         267 QIGE-NLDRYRTYPRIVGETGGKNFHLVHPSADVDSLVTATVRGAFEYQGQKCSAASRAYVPESLWPEVKERLLEELKEI  345 (522)
T ss_pred             HHHh-hcccccccCCEEEECCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcHHHHHHHHHHHHHHHhhC
Confidence            9987 776      899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhC-CCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEE
Q 011130          322 VVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDG-GAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSIL  400 (493)
Q Consensus       322 ~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~-ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~  400 (493)
                      ++|+|.|+++++||++++.+++++.++|++++++ |+++++||......|+|++|||+.+++++|++++||+||||++|+
T Consensus       346 ~~G~p~d~~t~~Gpli~~~~~~~v~~~v~~a~~~~Ga~vl~gg~~~~~~g~f~~PTvl~~v~~~~~i~~eEiFGPVl~V~  425 (522)
T cd07123         346 KMGDPDDFSNFMGAVIDEKAFDRIKGYIDHAKSDPEAEIIAGGKCDDSVGYFVEPTVIETTDPKHKLMTEEIFGPVLTVY  425 (522)
T ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEeCCCcCCCCCceEcCEEEeCCCCCChhhhcCCCCCeEEEE
Confidence            9999999999999999999999999999999999 999999997544468999999999999999999999999999999


Q ss_pred             EeCC--HHHHHHHHHcCC-CCcEEEEecCCHHHHHHHHHhc--ceeEEEECCcCCC--CCCCCccCCCCCCCC-CcchHH
Q 011130          401 KYKD--LDEVIQRSNASQ-YGLAAGVFTHNLDTANTLMRAL--RVGSVWINCFDVF--DAAIPFGGYKQSGQG-REKGSY  472 (493)
Q Consensus       401 ~~~~--~~eai~~~n~~~-~gl~a~v~t~d~~~~~~~~~~l--~~g~V~VN~~~~~--~~~~pfGG~~~SG~G-~~~g~~  472 (493)
                      +|++  +||+|+++|++. |||++||||+|.+.+.++++++  ++|+||||+.+..  .+.+||||+|+||+| +++|.+
T Consensus       426 ~~~~~~~~eai~~aN~~~~~gL~a~Vft~d~~~~~~~~~~l~~~~G~v~iN~~~~~~~~~~~PfGG~k~SG~gg~~~g~~  505 (522)
T cd07123         426 VYPDSDFEETLELVDTTSPYALTGAIFAQDRKAIREATDALRNAAGNFYINDKPTGAVVGQQPFGGARASGTNDKAGSPL  505 (522)
T ss_pred             EeCCCCHHHHHHHHhCCCCcCceEEEEeCCHHHHHHHHHhhhhcCcEEEECCCCCCCCCCCCCCCcchhcCCCcccCCHH
Confidence            9984  799999999985 9999999999999999999996  5999999986543  357899999999996 999999


Q ss_pred             HHHhhhhceEEEEeC
Q 011130          473 SLSNYLQVKAVVTAL  487 (493)
Q Consensus       473 ~l~~~~~~k~v~~~~  487 (493)
                      ++++|++.|++++..
T Consensus       506 ~l~~~~~~k~~~~~~  520 (522)
T cd07123         506 NLLRWVSPRTIKETF  520 (522)
T ss_pred             HHHHhcceEEEEEec
Confidence            999999999987653


No 35 
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=100.00  E-value=1.5e-82  Score=669.85  Aligned_cols=412  Identities=40%  Similarity=0.669  Sum_probs=389.1

Q ss_pred             eeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHH
Q 011130           69 LINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIA  148 (493)
Q Consensus        69 ~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela  148 (493)
                      ||||+|+.+.++++++++||.||+++++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++.++|+
T Consensus         1 ~i~g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~   78 (468)
T cd07088           1 YINGEFVPSSSGETIDVLNPATGEVVATVPAATAEDADRAVDAAEAAQK--AWERLPAIERAAYLRKLADLIRENADELA   78 (468)
T ss_pred             CCCCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            6999999766788999999999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE--------------------
Q 011130          149 ALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA--------------------  207 (493)
Q Consensus       149 ~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv--------------------  207 (493)
                      +++++|+|||..+++. |+..+++.+++++.++++..+...+.. .+...+..++|+|||                    
T Consensus        79 ~~~~~e~Gk~~~~a~~-ev~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~A  157 (468)
T cd07088          79 KLIVEEQGKTLSLARV-EVEFTADYIDYMAEWARRIEGEIIPSDRPNENIFIFKVPIGVVAGILPWNFPFFLIARKLAPA  157 (468)
T ss_pred             HHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhCCccccCccccceeEEEEecceeEEEEccCchHHHHHHHHHHHH
Confidence            9999999999999985 999999999999999887766544432 234567889999998                    


Q ss_pred             ---------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCC
Q 011130          208 ---------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNL  254 (493)
Q Consensus       208 ---------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~  254 (493)
                                                       |++|+|++.+.++++.|+.||++|+|+||||+.+|+.|++.+++ ++
T Consensus       158 L~aGN~VVlKps~~~p~~~~~l~~~~~~aglP~gvv~~v~g~~~~~~~~l~~~~~v~~V~ftGs~~~g~~i~~~aa~-~~  236 (468)
T cd07088         158 LVTGNTIVIKPSEETPLNALEFAELVDEAGLPAGVLNIVTGRGSVVGDALVAHPKVGMISLTGSTEAGQKIMEAAAE-NI  236 (468)
T ss_pred             HHcCCEEEEECCCcchHHHHHHHHHHHHcCcCccceEEEecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHHh-cC
Confidence                                             89999999777788999999999999999999999999999988 89


Q ss_pred             CceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccc
Q 011130          255 KPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQG  334 (493)
Q Consensus       255 ~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~g  334 (493)
                      ||+++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||++++|+|+++|++++.++++|+|.++++.+|
T Consensus       237 ~~~~lelGG~~~~iV~~dadl~~aa~~iv~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~g  316 (468)
T cd07088         237 TKVSLELGGKAPAIVMKDADLDLAVKAIVDSRIINCGQVCTCAERVYVHEDIYDEFMEKLVEKMKAVKVGDPFDAATDMG  316 (468)
T ss_pred             CcEEEECCCCCeEEECCCCCHHHHHHHHHHHHhcccCcCCcCCeEEEEcHHHHHHHHHHHHHHHHhcCCCCCCCCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC-CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHH
Q 011130          335 PQIDSEQFEKILKYIRSGVDGGAKLETGGERLG-AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSN  413 (493)
Q Consensus       335 pli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~-~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n  413 (493)
                      |++++.+++++.++|++++++|+++++||.... ..|+|++|||+.+++++|.++++|+||||++|++|+|++|||+++|
T Consensus       317 pli~~~~~~~~~~~i~~a~~~ga~vl~gg~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n  396 (468)
T cd07088         317 PLVNEAALDKVEEMVERAVEAGATLLTGGKRPEGEKGYFYEPTVLTNVRQDMEIVQEEIFGPVLPVVKFSSLDEAIELAN  396 (468)
T ss_pred             cccCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCceeEcCEEEecCCCCCchhhCCCcCCeEEEEecCCHHHHHHHHh
Confidence            999999999999999999999999999997643 4689999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          414 ASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       414 ~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +++|||+++|||+|.+.++++++++++|+||||++....+..||||+|.||+|+++|++++++||+.|+|+
T Consensus       397 ~~~~gL~~~v~t~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~p~gG~k~SG~G~~~g~~~l~~~t~~k~v~  467 (468)
T cd07088         397 DSEYGLTSYIYTENLNTAMRATNELEFGETYINRENFEAMQGFHAGWKKSGLGGADGKHGLEEYLQTKVVY  467 (468)
T ss_pred             CCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcccccCCcCchHHHHHHHhceeEEe
Confidence            99999999999999999999999999999999987765666799999999999999999999999999985


No 36 
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=100.00  E-value=2.7e-82  Score=672.43  Aligned_cols=416  Identities=36%  Similarity=0.566  Sum_probs=388.9

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCC-CCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRT-GDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHN  144 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~t-g~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~  144 (493)
                      +++||||+|+.  ++.+++++||+| |++|++++.++.+|+++++++|++||+  .|+++|..+|.++|++++++|+++.
T Consensus        33 ~~~~i~g~~~~--~~~~~~v~~P~t~~~~i~~~~~a~~~~v~~av~~A~~A~~--~W~~~~~~~R~~~L~~~a~~l~~~~  108 (512)
T cd07124          33 YPLVIGGKEVR--TEEKIESRNPADPSEVLGTVQKATKEEAEAAVQAARAAFP--TWRRTPPEERARLLLRAAALLRRRR  108 (512)
T ss_pred             cceeECCEEec--CCCeEEeECCCCCCceEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHCH
Confidence            47899999996  457899999998 999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-----------------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-----------------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-----------------  207 (493)
                      ++|++++++|+|||..+++. |+..+++.++|++.++++..+...+...+...++.++|+|||                 
T Consensus       109 ~~la~~~~~e~Gk~~~ea~~-ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~i  187 (512)
T cd07124         109 FELAAWMVLEVGKNWAEADA-DVAEAIDFLEYYAREMLRLRGFPVEMVPGEDNRYVYRPLGVGAVISPWNFPLAILAGMT  187 (512)
T ss_pred             HHHHHHHHHHcCcCHHHHHH-HHHHHHHHHHHHHHHHHHhcCccccCCCCceeEEEEecceEEEEECCCChHHHHHHHHH
Confidence            99999999999999999985 999999999999999888765544433344678899999998                 


Q ss_pred             ------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhh
Q 011130          208 ------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAK  251 (493)
Q Consensus       208 ------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~  251 (493)
                                                          |++|+|++.+.++++.|+.||++|.|+||||+.+|+.|++.+++
T Consensus       188 ~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGs~~~g~~i~~~aa~  267 (512)
T cd07124         188 TAALVTGNTVVLKPAEDTPVIAAKLVEILEEAGLPPGVVNFLPGPGEEVGDYLVEHPDVRFIAFTGSREVGLRIYERAAK  267 (512)
T ss_pred             HHHHHcCCEEEEECCccccHHHHHHHHHHHHhCcCCCceEEeccCchHHHHHHhcCCCCCEEEEeCchHHHHHHHHHHhc
Confidence                                                89999999777889999999999999999999999999998886


Q ss_pred             c-----CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCC
Q 011130          252 S-----NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDP  326 (493)
Q Consensus       252 ~-----~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p  326 (493)
                      .     ++||+++|+|||||+||++|||+|.|++.+++++|.|+||.|+++++||||++++|+|+++|++++.++++|+|
T Consensus       268 ~~~~~~~l~~~~lElgGk~p~iV~~daDl~~Aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~~~~g~p  347 (512)
T cd07124         268 VQPGQKWLKRVIAEMGGKNAIIVDEDADLDEAAEGIVRSAFGFQGQKCSACSRVIVHESVYDEFLERLVERTKALKVGDP  347 (512)
T ss_pred             ccccccCCCcEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhhCCCccccceEEEEcHHHHHHHHHHHHHHHHhCCCCCC
Confidence            3     58999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCC--CCceeeceEEecCCCCccccccccccceEEEEEeCC
Q 011130          327 FKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGA--KGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKD  404 (493)
Q Consensus       327 ~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~--~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~  404 (493)
                      .|+++++||++++.+++++.++|++++. |+++++||.....  .|+|++|||+.+++++|++++||+||||++|++|+|
T Consensus       348 ~d~~~~~Gpli~~~~~~~v~~~i~~a~~-g~~vl~gG~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eE~FgPvl~v~~~~~  426 (512)
T cd07124         348 EDPEVYMGPVIDKGARDRIRRYIEIGKS-EGRLLLGGEVLELAAEGYFVQPTIFADVPPDHRLAQEEIFGPVLAVIKAKD  426 (512)
T ss_pred             CCCCCcccCCcCHHHHHHHHHHHHHHHh-CCEEEecCccCCCCCCCceEcCEEEecCCCCChHHhCCCcCCeEEEEecCC
Confidence            9999999999999999999999999988 8999999976442  689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC--CCCCCccCCCCCCCC-CcchHHHHHhhhhce
Q 011130          405 LDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF--DAAIPFGGYKQSGQG-REKGSYSLSNYLQVK  481 (493)
Q Consensus       405 ~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~--~~~~pfGG~~~SG~G-~~~g~~~l~~~~~~k  481 (493)
                      +||+|+++|+++|||+++|||+|.+.+.++++++++|+||||+.+..  .+.+||||+|+||+| +++|.+++++||+.|
T Consensus       427 ~~eai~~~n~~~~gL~~~v~t~d~~~~~~~~~~l~~G~v~vN~~~~~~~~~~~PfGG~k~SG~G~~~~g~~~~~~~t~~k  506 (512)
T cd07124         427 FDEALEIANDTEYGLTGGVFSRSPEHLERARREFEVGNLYANRKITGALVGRQPFGGFKMSGTGSKAGGPDYLLQFMQPK  506 (512)
T ss_pred             HHHHHHHHhCCCCCCeEEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCccccccCCCccCcHHHHHHhccEE
Confidence            99999999999999999999999999999999999999999986543  367999999999999 889999999999999


Q ss_pred             EEEEeC
Q 011130          482 AVVTAL  487 (493)
Q Consensus       482 ~v~~~~  487 (493)
                      +|++++
T Consensus       507 ~v~~~~  512 (512)
T cd07124         507 TVTENF  512 (512)
T ss_pred             EEEEeC
Confidence            998763


No 37 
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase  AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase  PDB structure,  3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase  AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=100.00  E-value=4.1e-82  Score=666.69  Aligned_cols=414  Identities=41%  Similarity=0.682  Sum_probs=386.1

Q ss_pred             ceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 011130           68 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEI  147 (493)
Q Consensus        68 ~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~el  147 (493)
                      +||||+|+.+.++++++++||+||++|++++.++.+|+++++++|++||+.+.|+++|..+|.++|++++++|++|.++|
T Consensus         1 ~~i~g~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~a~~a~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~el   80 (471)
T cd07139           1 LFIGGRWVAPSGSETIDVVSPATEEVVGRVPEATPADVDAAVAAARRAFDNGPWPRLSPAERAAVLRRLADALEARADEL   80 (471)
T ss_pred             CeECCEeecCCCCCeEEeECCCCCCEeEEEeCCCHHHHHHHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            48999999766678899999999999999999999999999999999998445999999999999999999999999999


Q ss_pred             HHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccC-CCCCCceeEEEeeeeeeE-------------------
Q 011130          148 AALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTA-PADGPYHVQTLHEPIGVA-------------------  207 (493)
Q Consensus       148 a~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~-~~~~~~~~~~~~~PlGVv-------------------  207 (493)
                      ++++++|+|||..++...|+..+++.+++++..+++...... +...+...++.++|+|||                   
T Consensus        81 a~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~i~~  160 (471)
T cd07139          81 ARLWTAENGMPISWSRRAQGPGPAALLRYYAALARDFPFEERRPGSGGGHVLVRREPVGVVAAIVPWNAPLFLAALKIAP  160 (471)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCceEEEEEEeccEEEEEcCCchHHHHHHHHHHH
Confidence            999999999999777656999999999999998877654322 222244568899999998                   


Q ss_pred             ----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcC
Q 011130          208 ----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSN  253 (493)
Q Consensus       208 ----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~  253 (493)
                                                        |++|+|++ +.+.++.|+.|++++.|+||||+.+|+.|++.+++ +
T Consensus       161 ALaaGN~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~~v~g-~~~~~~~l~~~~~i~~v~ftGs~~~g~~v~~~~~~-~  238 (471)
T cd07139         161 ALAAGCTVVLKPSPETPLDAYLLAEAAEEAGLPPGVVNVVPA-DREVGEYLVRHPGVDKVSFTGSTAAGRRIAAVCGE-R  238 (471)
T ss_pred             HHhcCCEEEEECCCcCCHHHHHHHHHHHHcCCCCCcEEEEeC-CHHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHHh-c
Confidence                                              89999998 56688999999999999999999999999999988 8


Q ss_pred             CCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCcc
Q 011130          254 LKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQ  333 (493)
Q Consensus       254 ~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~  333 (493)
                      +||+++|+|||||+||++|||++.|++.|++++|+++||.|+++++||||++++|+|+++|++++.++++|+|.++++++
T Consensus       239 ~~~~~lElGG~np~iV~~dADl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~  318 (471)
T cd07139         239 LARVTLELGGKSAAIVLDDADLDAAVPGLVPASLMNNGQVCVALTRILVPRSRYDEVVEALAAAVAALKVGDPLDPATQI  318 (471)
T ss_pred             CCEEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEeHhHHHHHHHHHHHHHHhCCcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC--CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          334 GPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG--AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       334 gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~--~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      ||++++.+++++.++|++++++|+++++||....  ..|+|++|||+.+++++|++++||+||||++|++|+|+||||++
T Consensus       319 gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~~~~~Ptvl~~v~~~~~~~~eE~FgPvl~v~~~~~~~eai~~  398 (471)
T cd07139         319 GPLASARQRERVEGYIAKGRAEGARLVTGGGRPAGLDRGWFVEPTLFADVDNDMRIAQEEIFGPVLSVIPYDDEDDAVRI  398 (471)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCeEEccEEEecCCCcchHHhCccCCCeEEEeecCCHHHHHHH
Confidence            9999999999999999999999999999997543  35899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +|+++|||+++|||+|.+.+.++++++++|+|+||++. .++.+||||+|+||+|+++|.+++++||+.|+|+
T Consensus       399 ~n~~~~gL~a~i~s~d~~~~~~~~~~l~~G~v~iN~~~-~~~~~PfgG~k~SG~G~~~g~~~~~~ft~~k~i~  470 (471)
T cd07139         399 ANDSDYGLSGSVWTADVERGLAVARRIRTGTVGVNGFR-LDFGAPFGGFKQSGIGREGGPEGLDAYLETKSIY  470 (471)
T ss_pred             HhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEECCCC-CCCCCCCCCcccccCCccchHHHHHHHhceeEEe
Confidence            99999999999999999999999999999999999865 5678999999999999999999999999999986


No 38 
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=100.00  E-value=3.4e-82  Score=663.00  Aligned_cols=401  Identities=28%  Similarity=0.460  Sum_probs=375.8

Q ss_pred             CeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChh
Q 011130           81 KTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFE  160 (493)
Q Consensus        81 ~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~  160 (493)
                      ++++++||+||++|++++.++.+|+++++++|++||+  .|++++.++|.++|++++++|++|.++|++++++|+|||..
T Consensus         7 ~~~~~~nP~t~~~i~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~   84 (462)
T PRK13968          7 THAISVNPATGEQLSVLPWAGADDIENALQLAAAGFR--DWRETNIDYRAQKLRDIGKALRARSEEMAQMITREMGKPIN   84 (462)
T ss_pred             CceEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCHH
Confidence            5788999999999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             hhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE---------------------------------
Q 011130          161 QSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA---------------------------------  207 (493)
Q Consensus       161 ~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv---------------------------------  207 (493)
                      +++. |+..+++.++|++...++..............++.++|+|||                                 
T Consensus        85 ~a~~-ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~PwN~P~~~~~~~~~~ALaaGN~vv~KPs~  163 (462)
T PRK13968         85 QARA-EVAKSANLCDWYAEHGPAMLKAEPTLVENQQAVIEYRPLGTILAIMPWNFPLWQVMRGAVPILLAGNGYLLKHAP  163 (462)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHhhCCccccCCCceEEEEEeccceEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCC
Confidence            9885 999999999999988776544322222345668899999999                                 


Q ss_pred             --------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCce
Q 011130          208 --------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPF  267 (493)
Q Consensus       208 --------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~  267 (493)
                                          |++|+|++.+.+. ..|+.||++|+|+||||+++|+.|++.++. ++||+++|+|||||+
T Consensus       164 ~tp~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~-~~l~~~~~v~~V~fTGs~~~G~~i~~~aa~-~l~~~~lElGGk~p~  241 (462)
T PRK13968        164 NVMGCAQLIAQVFKDAGIPQGVYGWLNADNDGV-SQMINDSRIAAVTVTGSVRAGAAIGAQAGA-ALKKCVLELGGSDPF  241 (462)
T ss_pred             cChHHHHHHHHHHHHcCcCcCcEEEEecCchhh-HHHhcCCCCCEEEEECCHHHHHHHHHHHhh-cCCcEEEecCCCCce
Confidence                                8999999865544 458899999999999999999999999988 899999999999999


Q ss_pred             EEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHH
Q 011130          268 IVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILK  347 (493)
Q Consensus       268 iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~  347 (493)
                      ||++|||++.|++.+++++|+++||.|+++++||||++++|+|+++|+++++++++|+|.++++++||+++..+++++.+
T Consensus       242 iV~~dAdl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~~~~~  321 (462)
T PRK13968        242 IVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHH  321 (462)
T ss_pred             EECCCCCHHHHHHHHHHHHHhccCCCCcCCcEEEECHhHHHHHHHHHHHHHhcCCcCCCCCCCCCcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCC
Q 011130          348 YIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHN  427 (493)
Q Consensus       348 ~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d  427 (493)
                      ++++++.+|+++++||......|+|++|||+.+++++|.++++|+||||++|++|+|.||||+++|+++|||+++|||+|
T Consensus       322 ~i~~a~~~Ga~vl~gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPVl~v~~~~d~~eai~~~n~~~~gLs~~v~t~d  401 (462)
T PRK13968        322 QVEATLAEGARLLLGGEKIAGAGNYYAPTVLANVTPEMTAFREELFGPVAAITVAKDAEHALELANDSEFGLSATIFTTD  401 (462)
T ss_pred             HHHHHHHCCCEEEeCCCcCCCCceEECCEEEeCCCCCChHHhCCCcCCEEEEEEECCHHHHHHHHhCCCCcceEEEEcCC
Confidence            99999999999999997644468999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          428 LDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       428 ~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      .+.+.++++++++|+||||+....++.+||||+|+||+|+++|.+++++|++.|+|++.
T Consensus       402 ~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~G~~~l~~ft~~k~v~~~  460 (462)
T PRK13968        402 ETQARQMAARLECGGVFINGYCASDARVAFGGVKKSGFGRELSHFGLHEFCNIQTVWKD  460 (462)
T ss_pred             HHHHHHHHHhCCcceEEECCCCCCCCCCCCCCccccccCcCchHHHHHHhcceeEEEEe
Confidence            99999999999999999999877778899999999999999999999999999999764


No 39 
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=100.00  E-value=9.6e-82  Score=665.06  Aligned_cols=416  Identities=40%  Similarity=0.661  Sum_probs=389.8

Q ss_pred             ceeCCEeeeCCCCCeeeeecCCC-CCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           68 LLINGQFVDSASGKTFPTLDPRT-GDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        68 ~~I~G~~~~~~~~~~~~v~~P~t-g~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      +||||+|+.+.++++++++||+| ++++++++.++.+|+++++++|++||+  .|++++.++|.++|++++++|+++.++
T Consensus         1 ~~i~g~~~~~~~~~~~~~~~P~t~~~~~~~~~~~~~~~v~~av~~a~~A~~--~w~~~~~~~R~~~l~~~a~~l~~~~~e   78 (478)
T cd07131           1 NYIGGEWVDSASGETFDSRNPADLEEVVGTFPLSTASDVDAAVEAAREAFP--EWRKVPAPRRAEYLFRAAELLKKRKEE   78 (478)
T ss_pred             CcCCCEeecCCCCCeEEEECCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999766678999999998 689999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv------------------  207 (493)
                      |++++++|+|||+.+++. |+..+++.+++++...+++.+...+.. .....+..++|+|||                  
T Consensus        79 la~~~~~e~Gk~~~~~~~-ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~  157 (478)
T cd07131          79 LARLVTREMGKPLAEGRG-DVQEAIDMAQYAAGEGRRLFGETVPSELPNKDAMTRRQPIGVVALITPWNFPVAIPSWKIF  157 (478)
T ss_pred             HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhCCcccccCCCCceEEEEeeceeEEEEECCcCcHHHHHHHHHH
Confidence            999999999999999885 999999999999998887665543322 234568899999999                  


Q ss_pred             -----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhc
Q 011130          208 -----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKS  252 (493)
Q Consensus       208 -----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~  252 (493)
                                                         |++|+|++.+.++++.|+.||+||+|+||||+.+|+.|++.+++ 
T Consensus       158 ~ALaaGN~VvlKps~~~p~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L~~~~~vd~V~ftGs~~~g~~i~~~aa~-  236 (478)
T cd07131         158 PALVCGNTVVFKPAEDTPACALKLVELFAEAGLPPGVVNVVHGRGEEVGEALVEHPDVDVVSFTGSTEVGERIGETCAR-  236 (478)
T ss_pred             HHHHcCCEEEEECCCcCcHHHHHHHHHHHhcCcCCCcEEEEecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhh-
Confidence                                               89999998777789999999999999999999999999999988 


Q ss_pred             CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCc
Q 011130          253 NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQ  332 (493)
Q Consensus       253 ~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~  332 (493)
                      ++||+++|+|||||+||++|||++.|++.+++++|+++||.|+++++||||++++|+|+++|++++.++++|+|.+++++
T Consensus       237 ~~~~~~lelgG~~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~~~~g~p~~~~~~  316 (478)
T cd07131         237 PNKRVALEMGGKNPIIVMDDADLDLALEGALWSAFGTTGQRCTATSRLIVHESVYDEFLKRFVERAKRLRVGDGLDEETD  316 (478)
T ss_pred             cCCcEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEehhhHHHHHHHHHHHHHhcCCCCCCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHH
Q 011130          333 QGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEV  408 (493)
Q Consensus       333 ~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~ea  408 (493)
                      +||++++.+++++.++|++++++|+++++||....    ..|+|++|||+.+++++|+++++|+||||++|++|+|+|||
T Consensus       317 ~gpli~~~~~~~~~~~i~~a~~~Ga~~~~gg~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~FgPvl~v~~~~~~~ea  396 (478)
T cd07131         317 MGPLINEAQLEKVLNYNEIGKEEGATLLLGGERLTGGGYEKGYFVEPTVFTDVTPDMRIAQEEIFGPVVALIEVSSLEEA  396 (478)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCceECCEEEeCCCCCChHhhCCCcCCeEEEEEeCCHHHH
Confidence            99999999999999999999999999999997542    36899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC-CCCCCccCCCCCCCC-CcchHHHHHhhhhceEEEEe
Q 011130          409 IQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF-DAAIPFGGYKQSGQG-REKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       409 i~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~-~~~~pfGG~~~SG~G-~~~g~~~l~~~~~~k~v~~~  486 (493)
                      |+++|+++|||+++|||+|.+.++++++++++|+||||++... .+.+||||+|+||+| +++|.+++++|++.|+|+++
T Consensus       397 i~~~n~~~~gL~~~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~~pfgG~k~SG~G~~~~g~~~~~~f~~~k~i~~~  476 (478)
T cd07131         397 IEIANDTEYGLSSAIYTEDVNKAFRARRDLEAGITYVNAPTIGAEVHLPFGGVKKSGNGHREAGTTALDAFTEWKAVYVD  476 (478)
T ss_pred             HHHHhCCCCcceEEEEcCCHHHHHHHHHhcCccEEEECCCCCCCCCCCCCCCcccccCCCcCCcHHHHHHhhheEEEEEe
Confidence            9999999999999999999999999999999999999987653 578999999999999 88999999999999999875


Q ss_pred             C
Q 011130          487 L  487 (493)
Q Consensus       487 ~  487 (493)
                      +
T Consensus       477 ~  477 (478)
T cd07131         477 Y  477 (478)
T ss_pred             C
Confidence            3


No 40 
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=100.00  E-value=6e-82  Score=664.20  Aligned_cols=409  Identities=42%  Similarity=0.654  Sum_probs=384.5

Q ss_pred             ceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 011130           68 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEI  147 (493)
Q Consensus        68 ~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~el  147 (493)
                      +||||+|+.+.++++++++||.||+++++++.++.+|+++++++|++||+  .|+++|..+|.++|++++++|+++.++|
T Consensus         1 ~~i~g~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l   78 (466)
T cd07138           1 FYIDGAWVAPAGTETIDVINPATEEVIGTVPLGTAADVDRAVAAARRAFP--AWSATSVEERAALLERIAEAYEARADEL   78 (466)
T ss_pred             CeECCEeecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            58999999876678899999999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             HHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE--------------------
Q 011130          148 AALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA--------------------  207 (493)
Q Consensus       148 a~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv--------------------  207 (493)
                      ++++++|+|||..++...|+..+++.++++++..+++.....    ....+..++|+|||                    
T Consensus        79 a~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~A  154 (466)
T cd07138          79 AQAITLEMGAPITLARAAQVGLGIGHLRAAADALKDFEFEER----RGNSLVVREPIGVCGLITPWNWPLNQIVLKVAPA  154 (466)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccccc----CceEEEEEeecceEEEECCCccHHHHHHHHHHHH
Confidence            999999999999887655899999999999988877654322    23456789999998                    


Q ss_pred             ---------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCC
Q 011130          208 ---------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNL  254 (493)
Q Consensus       208 ---------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~  254 (493)
                                                       |++|+|++.+.++++.|+.||+++.|+||||+.+|+.|++.++. ++
T Consensus       155 LaaGN~Vv~Kps~~~p~~~~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~-~~  233 (466)
T cd07138         155 LAAGCTVVLKPSEVAPLSAIILAEILDEAGLPAGVFNLVNGDGPVVGEALSAHPDVDMVSFTGSTRAGKRVAEAAAD-TV  233 (466)
T ss_pred             HhcCCEEEEECCCcCcHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhc-cC
Confidence                                             89999998777789999999999999999999999999999988 89


Q ss_pred             CceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccc
Q 011130          255 KPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQG  334 (493)
Q Consensus       255 ~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~g  334 (493)
                      +|+++|+|||||+||++|||++.|++.+++++|.++||.|+++++||||++++|+|+++|+++++++++|||.++++++|
T Consensus       234 ~~v~lElgG~~p~iV~~dADl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~g  313 (466)
T cd07138         234 KRVALELGGKSANIILDDADLEKAVPRGVAACFANSGQSCNAPTRMLVPRSRYAEAEEIAAAAAEAYVVGDPRDPATTLG  313 (466)
T ss_pred             CeEEEECCCCCeeEECCCCCHHHHHHHHHHHHHhccCCCCcCCcEEEEeHhHHHHHHHHHHHHHHhcCCCCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC---CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          335 PQIDSEQFEKILKYIRSGVDGGAKLETGGERLG---AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       335 pli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~---~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      |++++.+++++.++|++++++|+++++||....   ..|+|++|||+.+++++|++++||+||||++|++|+|.||||++
T Consensus       314 pli~~~~~~~~~~~v~~a~~~Ga~~l~gg~~~~~~~~~g~~~~Ptvl~~~~~~~~i~~eE~fgPvl~v~~~~~~~eai~~  393 (466)
T cd07138         314 PLASAAQFDRVQGYIQKGIEEGARLVAGGPGRPEGLERGYFVKPTVFADVTPDMTIAREEIFGPVLSIIPYDDEDEAIAI  393 (466)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCcCCCCceECCEEecCCCCCChHHhCCCCCceEEEeccCCHHHHHHH
Confidence            999999999999999999999999999986322   36899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +|+++|||+++|||+|.+.+.++++++++|+||||+.. ..+.+||||+|.||+|+++|.+++++|++.|+++
T Consensus       394 ~n~~~~gL~a~i~t~d~~~a~~~~~~l~~G~v~iN~~~-~~~~~PfgG~k~SG~G~~~g~~~~~~~~~~k~v~  465 (466)
T cd07138         394 ANDTPYGLAGYVWSADPERARAVARRLRAGQVHINGAA-FNPGAPFGGYKQSGNGREWGRYGLEEFLEVKSIQ  465 (466)
T ss_pred             HhCCCCCceEEEEcCCHHHHHHHHHhcCcceEEECCCC-CCCCCCcCCcccccCCccchHHHHHHhcceeEEe
Confidence            99999999999999999999999999999999999863 5678999999999999999999999999999875


No 41 
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=100.00  E-value=1e-81  Score=661.93  Aligned_cols=408  Identities=37%  Similarity=0.587  Sum_probs=384.5

Q ss_pred             CEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011130           72 GQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALE  151 (493)
Q Consensus        72 G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~  151 (493)
                      |+|+.+.++.+++++||+||+++++++.++.+|+++++++|++|++  .|+++|..+|.++|++++++|+++.++|++++
T Consensus         1 g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~   78 (465)
T cd07151           1 GEWRDGTSERTIDVLNPYTGETLAEIPAASKEDVDEAYRAAAAAQK--EWAATLPQERAEILEKAAQILEERRDEIVEWL   78 (465)
T ss_pred             CCceeCCCCCeEeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            6788766677899999999999999999999999999999999999  99999999999999999999999999999999


Q ss_pred             HHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE-----------------------
Q 011130          152 TWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA-----------------------  207 (493)
Q Consensus       152 ~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv-----------------------  207 (493)
                      ++|+|||..++.. |+..+++.+++++.+.++..+...+.. .+...++.++|+|||                       
T Consensus        79 ~~e~Gk~~~~a~~-Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaa  157 (465)
T cd07151          79 IRESGSTRIKANI-EWGAAMAITREAATFPLRMEGRILPSDVPGKENRVYREPLGVVGVISPWNFPLHLSMRSVAPALAL  157 (465)
T ss_pred             HHHcCCCHHHHHH-HHHHHHHHHHHHHHhHHHhcCccccCCCCCceeEEEEecceEEEEECCCChHHHHHHHHHHHHHHc
Confidence            9999999999885 999999999999988877765544432 244567889999999                       


Q ss_pred             -------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCc
Q 011130          208 -------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKP  256 (493)
Q Consensus       208 -------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~p  256 (493)
                                                     |++|+|++++.++++.|+.||.+++|.||||+.+|+.|++.+++ ++||
T Consensus       158 GN~Vi~Kps~~~p~~~~~~l~~~l~~aG~P~gvv~~v~g~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~-~~~~  236 (465)
T cd07151         158 GNAVVLKPASDTPITGGLLLAKIFEEAGLPKGVLNVVVGAGSEIGDAFVEHPVPRLISFTGSTPVGRHIGELAGR-HLKK  236 (465)
T ss_pred             CCEEEEECCCCCcHhHHHHHHHHHHHcCcCccceEEEecCchhhHHHHhcCCCCCEEEEECCHHHHHHHHHHHHh-cCCc
Confidence                                           89999998777888999999999999999999999999999998 8999


Q ss_pred             eeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccC
Q 011130          257 VTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQ  336 (493)
Q Consensus       257 v~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpl  336 (493)
                      +++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||+++||+|+++|++++.++++|+|.++++.+||+
T Consensus       237 ~~lElGGk~p~iV~~daDl~~Aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~~~~g~p~~~~~~~gpl  316 (465)
T cd07151         237 VALELGGNNPFVVLEDADIDAAVNAAVFGKFLHQGQICMAINRIIVHEDVYDEFVEKFVERVKALPYGDPSDPDTVVGPL  316 (465)
T ss_pred             EEEECCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEeHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCC
Q 011130          337 IDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQ  416 (493)
Q Consensus       337 i~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~  416 (493)
                      +++.+++++.++|++++++|+++++||..   .|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++
T Consensus       317 i~~~~~~~v~~~v~~a~~~ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~eai~~~n~~~  393 (465)
T cd07151         317 INESQVDGLLDKIEQAVEEGATLLVGGEA---EGNVLEPTVLSDVTNDMEIAREEIFGPVAPIIKADDEEEALELANDTE  393 (465)
T ss_pred             cCHHHHHHHHHHHHHHHhCCCEEEecCCc---CCEEEccEEEeCCCCCCchhhCcCcCCeEEEEeeCCHHHHHHHHhCCC
Confidence            99999999999999999999999999964   589999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC-CCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          417 YGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF-DAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       417 ~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~-~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      |||+++|||+|.+++.++++++++|+|+||+++.. .+.+||||+|+||+|+++|+++|++|++.|++++.
T Consensus       394 ~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~~t~~k~~~~~  464 (465)
T cd07151         394 YGLSGAVFTSDLERGVQFARRIDAGMTHINDQPVNDEPHVPFGGEKNSGLGRFNGEWALEEFTTDKWISVQ  464 (465)
T ss_pred             ccceEEEECCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCCCCcccccCCcCChHHHHHHhhceEEEEec
Confidence            99999999999999999999999999999987654 46799999999999999999999999999999765


No 42 
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=100.00  E-value=1e-81  Score=658.57  Aligned_cols=398  Identities=33%  Similarity=0.523  Sum_probs=375.0

Q ss_pred             eeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhh
Q 011130           83 FPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS  162 (493)
Q Consensus        83 ~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a  162 (493)
                      ++++||.||+++++++.++.+|+++++++|++||+  .|+.+|.++|.++|++++++|++++++|++++++|+|||+.++
T Consensus         3 ~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a   80 (457)
T PRK09406          3 IATINPATGETVKTFTALTDDEVDAAIARAHARFR--DYRTTTFAQRARWANAAADLLEAEADQVAALMTLEMGKTLASA   80 (457)
T ss_pred             eeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCHHHH
Confidence            67899999999999999999999999999999999  9999999999999999999999999999999999999999998


Q ss_pred             hhccHHHHHHHHHHHHHhhHHhcCccCCC---CCCceeEEEeeeeeeE--------------------------------
Q 011130          163 AQTEVPMTTRLFRYYAGWADKIQGLTAPA---DGPYHVQTLHEPIGVA--------------------------------  207 (493)
Q Consensus       163 ~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~---~~~~~~~~~~~PlGVv--------------------------------  207 (493)
                      .. |+..+++.++|++..+++........   ......++.++|+|||                                
T Consensus        81 ~~-ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~PwN~Pl~~~~~~~~~ALaaGN~VV~Kps  159 (457)
T PRK09406         81 KA-EALKCAKGFRYYAEHAEALLADEPADAAAVGASRAYVRYQPLGVVLAVMPWNFPLWQVVRFAAPALMAGNVGLLKHA  159 (457)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHhCCccccccCCCCceEEEEEecceeEEEECCccchHHHHHHHHHHHHHcCCEEEEECC
Confidence            75 99999999999999887765443211   1234568889999999                                


Q ss_pred             ---------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCc
Q 011130          208 ---------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSP  266 (493)
Q Consensus       208 ---------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p  266 (493)
                                           |++|+|++ +.+.+..|+.|+++++|+||||+++|+.|++.+++ ++||+++|+|||||
T Consensus       160 ~~~p~~~~~l~~l~~~aGlP~gvv~~v~~-g~~~~~~l~~~~~i~~V~fTGs~~~G~~i~~~a~~-~~~~~~lElGG~~~  237 (457)
T PRK09406        160 SNVPQTALYLADLFRRAGFPDGCFQTLLV-GSGAVEAILRDPRVAAATLTGSEPAGRAVAAIAGD-EIKKTVLELGGSDP  237 (457)
T ss_pred             CcCcHHHHHHHHHHHHhCCCcCcEEEEcC-CchhHHHHhcCCCcCEEEEECcHHHHHHHHHHHHh-cCCceeeecCCCCe
Confidence                                 89999986 44567889999999999999999999999999888 89999999999999


Q ss_pred             eEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHH
Q 011130          267 FIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKIL  346 (493)
Q Consensus       267 ~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~  346 (493)
                      +||++|||++.|++.+++++|.|+||.|+++++||||++++|+|+++|+++++++++|+|.|+++++||++++.+++++.
T Consensus       238 ~iV~~dadl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~~~  317 (457)
T PRK09406        238 FIVMPSADLDRAAETAVTARVQNNGQSCIAAKRFIVHADVYDAFAEKFVARMAALRVGDPTDPDTDVGPLATEQGRDEVE  317 (457)
T ss_pred             eEECCCCCHHHHHHHHHHHHhhCCCCcccCCeEEEEcHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCcCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecC
Q 011130          347 KYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTH  426 (493)
Q Consensus       347 ~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~  426 (493)
                      ++|++++++|+++++||...+..|+|++|||+.+++++|.+++||+||||++|++|+|++|+|+++|+++|||+++|||+
T Consensus       318 ~~i~~a~~~Ga~~l~gg~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gL~~~v~t~  397 (457)
T PRK09406        318 KQVDDAVAAGATILCGGKRPDGPGWFYPPTVITDITPDMRLYTEEVFGPVASLYRVADIDEAIEIANATTFGLGSNAWTR  397 (457)
T ss_pred             HHHHHHHHCCCEEEeCCCcCCCCCceEccEEeecCCCCCHHhhCCCCCceEEEEeeCCHHHHHHHHhCCCCCceEEEEcC
Confidence            99999999999999999865557999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          427 NLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       427 d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      |.+.+.++++++++|+||||+++...+.+||||+|+||+|+++|.+++++||+.|+|++
T Consensus       398 d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~~t~~k~v~~  456 (457)
T PRK09406        398 DEAEQERFIDDLEAGQVFINGMTVSYPELPFGGVKRSGYGRELSAHGIREFCNIKTVWI  456 (457)
T ss_pred             CHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCccccccCccchHHHHHHhhceEEEEe
Confidence            99999999999999999999988778889999999999999999999999999999865


No 43 
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=100.00  E-value=1.3e-81  Score=660.59  Aligned_cols=404  Identities=42%  Similarity=0.708  Sum_probs=381.5

Q ss_pred             cccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhH
Q 011130           65 YTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHN  144 (493)
Q Consensus        65 ~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~  144 (493)
                      +.++||||+|+.+.++++++++||+||+++++++.++.+|+++++++|++||+  .|+++|..+|.++|++++++|+++.
T Consensus        21 ~~~~~i~g~~~~~~~~~~~~~~nP~t~~~i~~~~~a~~~~v~~ai~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~   98 (480)
T cd07111          21 SFGHFINGKWVKPENRKSFPTINPATGEVLASVLQAEEEDVDAAVAAARTAFE--SWSALPGHVRARHLYRIARHIQKHQ   98 (480)
T ss_pred             cccceECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHhH
Confidence            45789999999866678899999999999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-----------------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-----------------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-----------------  207 (493)
                      ++|++++++|+|||+.+++..|+..+++.+++++++.+...+.          +..++|+|||                 
T Consensus        99 ~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~~~~~~----------~~~~~P~GVV~~I~PwN~P~~~~~~~i  168 (480)
T cd07111          99 RLFAVLESLDNGKPIRESRDCDIPLVARHFYHHAGWAQLLDTE----------LAGWKPVGVVGQIVPWNFPLLMLAWKI  168 (480)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------cccceecceEEEECCCccHHHHHHHHH
Confidence            9999999999999999987558999999999999887754321          3457899998                 


Q ss_pred             ------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhh
Q 011130          208 ------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAK  251 (493)
Q Consensus       208 ------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~  251 (493)
                                                          |++|+|++.+ +.+..|+.||++|.|+||||+.+|+.|++.+++
T Consensus       169 ~~ALaaGN~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~-~~~~~l~~~~~v~~v~ftGs~~~g~~v~~~aa~  247 (480)
T cd07111         169 CPALAMGNTVVLKPAEYTPLTALLFAEICAEAGLPPGVLNIVTGNG-SFGSALANHPGVDKVAFTGSTEVGRALRRATAG  247 (480)
T ss_pred             HHHHHcCCEEEEECCCCChHHHHHHHHHHHhcCCCcccEEEEeCCc-hHHHHHhcCCCcCEEEEECCHHHHHHHHHHHhc
Confidence                                                9999999854 678899999999999999999999999999988


Q ss_pred             cCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCC
Q 011130          252 SNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGI  331 (493)
Q Consensus       252 ~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~  331 (493)
                       ++||+++|+|||||+||++|+|+|.|++.+++++|.++||.|+++++||||++++|+|+++|+++++++++|+|.++++
T Consensus       248 -~~~~~~lElGGk~p~iV~~daDl~~aa~~i~~~~f~~~GQ~C~a~~ri~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~  326 (480)
T cd07111         248 -TGKKLSLELGGKSPFIVFDDADLDSAVEGIVDAIWFNQGQVCCAGSRLLVQESVAEELIRKLKERMSHLRVGDPLDKAI  326 (480)
T ss_pred             -cCCcEEEEcCCCceEEECCCCCHHHHHHHHHHHHHhcCCCcCcCCceEEEcHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          332 QQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       332 ~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      ++||++++.+++++.++|++++++|+++++||...+..|+|++|||+.+++++|++++||+||||++|++|+|+||||++
T Consensus       327 ~~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~eE~FgPvl~v~~~~~~deai~~  406 (480)
T cd07111         327 DMGAIVDPAQLKRIRELVEEGRAEGADVFQPGADLPSKGPFYPPTLFTNVPPASRIAQEEIFGPVLVVLTFRTAKEAVAL  406 (480)
T ss_pred             ccccccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEeeEEEecCCCCChhhcCCCCCCeeEeecCCCHHHHHHH
Confidence            99999999999999999999999999999998754456899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceE
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKA  482 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~  482 (493)
                      +|+++|||+++|||+|.+.+.++++++++|+|+||+.....+.+||||+|+||+|+++|.+++++||+.|+
T Consensus       407 ~n~~~~gL~~~i~t~d~~~~~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~~~~~k~  477 (480)
T cd07111         407 ANNTPYGLAASVWSENLSLALEVALSLKAGVVWINGHNLFDAAAGFGGYRESGFGREGGKEGLYEYLRPSW  477 (480)
T ss_pred             HhCCCCCceEEEEcCCHHHHHHHHHhCCEeeEEECCCCCCCCCCCcCCcccccCCccchHHHHHHHhhccC
Confidence            99999999999999999999999999999999999987777889999999999999999999999999885


No 44 
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=100.00  E-value=3.1e-81  Score=660.43  Aligned_cols=416  Identities=30%  Similarity=0.455  Sum_probs=381.9

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      .+||||+|+.+ ++++++++||+||+++++++.++.+++++++++|++||+  .|+++|..+|.++|++++++|+++.++
T Consensus         2 ~~~i~g~~~~~-~~~~~~~~~P~t~~~i~~~~~a~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~e   78 (487)
T PRK09457          2 TLWINGDWIAG-QGEAFESRNPVSGEVLWQGNDATAAQVDAAVRAARAAFP--AWARLSFEERQAIVERFAALLEENKEE   78 (487)
T ss_pred             CceECCEEecC-CCCEEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHccCCHHHHHHHHHHHHHHHHhHHHH
Confidence            47999999975 467899999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------  207 (493)
                      |++++++|+|||..+++. |+..+++.+++++.+..+..+...+...+...++.++|+|||                   
T Consensus        79 la~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~  157 (487)
T PRK09457         79 LAEVIARETGKPLWEAAT-EVTAMINKIAISIQAYHERTGEKRSEMADGAAVLRHRPHGVVAVFGPYNFPGHLPNGHIVP  157 (487)
T ss_pred             HHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCceeccCCCceeEEEEeccEEEEEECCCchHHHHHHHHHHH
Confidence            999999999999999985 999999999999887766555433322344568899999999                   


Q ss_pred             ----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcC
Q 011130          208 ----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSN  253 (493)
Q Consensus       208 ----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~  253 (493)
                                                        |++|+|++ +.+.++.|+.||+||+|+||||+++|+.|++.++...
T Consensus       158 ALaaGN~VvlKPs~~tp~t~~~l~~l~~~aGlP~gvv~~v~g-~~~~~~~L~~~~~v~~V~fTGS~~~G~~i~~~aa~~~  236 (487)
T PRK09457        158 ALLAGNTVVFKPSELTPWVAELTVKLWQQAGLPAGVLNLVQG-GRETGKALAAHPDIDGLLFTGSANTGYLLHRQFAGQP  236 (487)
T ss_pred             HHHcCCEEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeC-CHHHHHHHhcCCCcCEEEEECCHHHHHHHHHHHhhcC
Confidence                                              89999998 6678899999999999999999999999999877634


Q ss_pred             CCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhH-HHHHHHHHHHHhhcccCCCC-CCCC
Q 011130          254 LKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVY-DQFVEKANALAMKRVVGDPF-KGGI  331 (493)
Q Consensus       254 ~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~-d~f~~~l~~~~~~~~vg~p~-~~~~  331 (493)
                      .+++++|||||||+||++|||++.|++.+++++|.|+||.|+++++||||+++| |+|+++|+++++++++|||+ ++.+
T Consensus       237 ~~~~~lElGGk~p~IV~~dADl~~aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~~d~f~~~l~~~~~~~~vG~p~~~~~~  316 (487)
T PRK09457        237 EKILALEMGGNNPLVIDEVADIDAAVHLIIQSAFISAGQRCTCARRLLVPQGAQGDAFLARLVAVAKRLTVGRWDAEPQP  316 (487)
T ss_pred             CCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHhhccCCCCCCCceEEEeccccHHHHHHHHHHHHhcCcCCCCCcCCCC
Confidence            678999999999999999999999999999999999999999999999999998 99999999999999999996 7889


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          332 QQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       332 ~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      ++||+++..+++++.++|++++++|+++++||...++.|+|++|||+ +++++|++++||+||||++|++|+|+||||++
T Consensus       317 ~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl-~v~~~~~i~~eE~FGPVl~V~~~~~~deai~~  395 (487)
T PRK09457        317 FMGAVISEQAAQGLVAAQAQLLALGGKSLLEMTQLQAGTGLLTPGII-DVTGVAELPDEEYFGPLLQVVRYDDFDEAIRL  395 (487)
T ss_pred             ccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCccCCCCeeEecEEe-ccCCCChHHhCCCcCCeEEEEEeCCHHHHHHH
Confidence            99999999999999999999999999999988655556899999999 68999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC-CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeCCC
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV-FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTALKN  489 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~-~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~~~  489 (493)
                      +|+++|||+++|||+|.+.++++++++++|+|+||+... ..+.+||||+|+||+|+++|..+ .+|++.|+++..+..
T Consensus       396 ~N~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~~PfGG~k~SG~G~~~g~~~-~~~~~~k~~~~~~~~  473 (487)
T PRK09457        396 ANNTRFGLSAGLLSDDREDYDQFLLEIRAGIVNWNKPLTGASSAAPFGGVGASGNHRPSAYYA-ADYCAYPMASLESDS  473 (487)
T ss_pred             HhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEEECCCCCCCCCCCCCCcccccCCCCCchhH-hhheeeeEEEEeccc
Confidence            999999999999999999999999999999999997644 34678999999999999999544 559999999988644


No 45 
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=100.00  E-value=3.3e-81  Score=663.41  Aligned_cols=417  Identities=33%  Similarity=0.526  Sum_probs=386.0

Q ss_pred             ccccceeCCEeeeCCCCCeeeeecCC-CCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 011130           64 DYTQLLINGQFVDSASGKTFPTLDPR-TGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLER  142 (493)
Q Consensus        64 ~~~~~~I~G~~~~~~~~~~~~v~~P~-tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~  142 (493)
                      ...++||||+|+.+  +.++.++||+ ||+++++++.++.+|++++|++|++||+  .|+++|.++|.++|++++++|++
T Consensus        31 ~~~~~~i~g~~~~~--~~~~~~~~P~~~~~~i~~~~~~~~~~v~~av~~A~~A~~--~W~~~~~~~R~~~L~~~a~~l~~  106 (511)
T TIGR01237        31 KTYPLYINGEYVET--ENKIDSINPCDPSEVVGKVGKASVEQAEHALQIAKKAFE--AWKKTPVRERAGILRKAAAIMER  106 (511)
T ss_pred             cccceeECCEEecC--CCeEEeECCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHH
Confidence            44578999999964  4678999999 5999999999999999999999999999  99999999999999999999999


Q ss_pred             hHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCC-CCCceeEEEeeeeeeE--------------
Q 011130          143 HNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPA-DGPYHVQTLHEPIGVA--------------  207 (493)
Q Consensus       143 ~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~-~~~~~~~~~~~PlGVv--------------  207 (493)
                      ++++|++++++|+|||..++.. |+..+++.++|+++++++..+...+. ..+...++.++|+|||              
T Consensus       107 ~~~~la~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~P~~~~~  185 (511)
T TIGR01237       107 RRHELNALICLEVGKIIPEADA-EVAEAIDFCEYYAREMERLAGQGVNLDIEGETNRYFYQPRGVAVVISPWNFPMAIAV  185 (511)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEecceeEEEECCCCcHHHHHH
Confidence            9999999999999999999885 99999999999999888776543322 2234567889999999              


Q ss_pred             ---------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHH
Q 011130          208 ---------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQL  248 (493)
Q Consensus       208 ---------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~  248 (493)
                                                             |++|+|++.+.++++.|+.||++++|.||||+.+|+.|++.
T Consensus       186 ~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGs~~~G~~i~~~  265 (511)
T TIGR01237       186 GMTVAPIVTGNCVVLKPAETSTVIAAKIVEILIEAGLPPGVFQFVPGKGSEVGSYLVNHPKTHLITFTGSREVGCRIYED  265 (511)
T ss_pred             HHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCCCCCcEEEccCCCchhHHHHhcCCCCCeEEEECchHHHHHHHHH
Confidence                                                   99999999777889999999999999999999999999998


Q ss_pred             Hhh-----cCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhccc
Q 011130          249 AAK-----SNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVV  323 (493)
Q Consensus       249 a~~-----~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~v  323 (493)
                      ++.     .+++|+++|||||||+||++|||++.|++.+++++|.|+||.|+++++||||++++|+|+++|++++.++++
T Consensus       266 aa~~~~~~~~~~~~~lElgG~~p~iV~~dAdl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~L~~~~~~l~~  345 (511)
T TIGR01237       266 AAKVQPGQKHLKRVIAEMGGKDAIIVDESADIEQAVAGAVYSAFGFTGQKCSACSRVVVLSPVYDAVVERFVEATRSLNV  345 (511)
T ss_pred             HhcccccccccceeEeccCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCcccceEEEEehhHHHHHHHHHHHHHHhCCC
Confidence            872     278999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeC
Q 011130          324 GDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK  403 (493)
Q Consensus       324 g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~  403 (493)
                      |+|.++.+++||++++.+++++.++|++++++| ++++||......|+|++|||+.+++++|+++++|+||||++|++|+
T Consensus       346 g~~~~~~~~~gpli~~~~~~~v~~~i~~a~~~g-~~l~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~eE~FgPVl~v~~~~  424 (511)
T TIGR01237       346 GPTDDPSTQVGPVIDQKSQAKIQEYIEQGKAEG-ELAIGGCDAPSEGYFIGPTIFKDVDRHARLAQEEIFGPVVAIIRAA  424 (511)
T ss_pred             CCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCC-cEEECCccCCCCCeEEcCEEEeCCCCCChHhhCCCcCCeEEEEeeC
Confidence            999999999999999999999999999999888 8999886544468999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC--CCCCCccCCCCCCCCC-cchHHHHHhhhhc
Q 011130          404 DLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF--DAAIPFGGYKQSGQGR-EKGSYSLSNYLQV  480 (493)
Q Consensus       404 ~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~--~~~~pfGG~~~SG~G~-~~g~~~l~~~~~~  480 (493)
                      |+||||+++|+++|||+++|||+|.+.+.++++++++|+||||++...  .+.+||||+|+||+|+ ++|.+++++|++.
T Consensus       425 ~~deai~~~n~~~~gL~a~i~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~~~PfGG~k~SG~G~~~~g~~~l~~~~~~  504 (511)
T TIGR01237       425 DFDEALEIANGTEYGLTGGVYSNTRDHIERAAAEFEVGNLYFNRTITGAIVGRQPFGGFKMSGTDSKAGGPDYLLQFMQP  504 (511)
T ss_pred             CHHHHHHHHhCCCCCCeEEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCccccccCCCcCCCHHHHHHhcce
Confidence            999999999999999999999999999999999999999999987543  3568999999999995 7999999999999


Q ss_pred             eEEEEe
Q 011130          481 KAVVTA  486 (493)
Q Consensus       481 k~v~~~  486 (493)
                      |+++.+
T Consensus       505 k~v~~~  510 (511)
T TIGR01237       505 KTVTEN  510 (511)
T ss_pred             EEEEEe
Confidence            999765


No 46 
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=100.00  E-value=1.9e-81  Score=656.85  Aligned_cols=393  Identities=38%  Similarity=0.661  Sum_probs=371.9

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||+||+++++++.++.+++++++++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||..+++.
T Consensus         1 ~~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~   78 (448)
T TIGR01780         1 VYNPATGEIIGTVPDQGVEEAEAAIRAAYEAFK--TWKNTTAKERSSLLRKWYNLMMENKDDLARLITLENGKPLKEAKG   78 (448)
T ss_pred             CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH
Confidence            479999999999999999999999999999999  999999999999999999999999999999999999999999985


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE------------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA------------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv------------------------------------  207 (493)
                       |+..+++.++|++.+.+++.+...+.. .+...+..++|+|||                                    
T Consensus        79 -ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p  157 (448)
T TIGR01780        79 -EILYAASFLEWFAEEAKRVYGDTIPSPQSDKRLLVIKQPVGVCAAITPWNFPAAMITRKAGAALAAGCTVVVKPAEQTP  157 (448)
T ss_pred             -HHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEeeeeEEEEEcCCChHHHHHHHHHHHHHHcCCeEeeECCccch
Confidence             999999999999988877766544322 344567789999999                                    


Q ss_pred             -----------------eEEEeeeCC-ccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEE
Q 011130          208 -----------------GVLNIVSGY-GPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIV  269 (493)
Q Consensus       208 -----------------gvv~vv~~~-~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV  269 (493)
                                       |++|+|++. +.+.++.|+.||++++|+||||+.+|+.|++.++. ++||+++|+|||||+||
T Consensus       158 ~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~~l~~~~~i~~v~ftGs~~~g~~v~~~aa~-~~~~~~lElGGk~~~iV  236 (448)
T TIGR01780       158 LSALALARLAEQAGIPKGVLNVITGSRAKEVGKVLCTSPLVRKISFTGSTNVGKILMKQSAS-TVKKVSMELGGNAPFIV  236 (448)
T ss_pred             HHHHHHHHHHHHcCCCccceEEEeCCCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhh-cCCceEeecCCCCeeEE
Confidence                             999999987 67788999999999999999999999999999988 89999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHH
Q 011130          270 CEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYI  349 (493)
Q Consensus       270 ~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i  349 (493)
                      ++|||+|.|++.+++++|.|+||.|+++++||||+++||+|+++|+++++++++|+|.++++++||++++.+++++.++|
T Consensus       237 ~~dadl~~aa~~iv~~~f~~sGQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~v~~~i  316 (448)
T TIGR01780       237 FDDADIDQAVEGAMASKFRNAGQTCVCANRLYVHDGIYDEFAKKLAEAVKKLKVGNGLDEGVTQGPLINEKAVEKVEKHI  316 (448)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCcccCCceeechHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHH
Q 011130          350 RSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLD  429 (493)
Q Consensus       350 ~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~  429 (493)
                      ++++++|+++++||......|+|++|||+.+++++|++++||+||||++|++|+|++|+|+++|+++|||+++|||+|.+
T Consensus       317 ~~a~~~Ga~il~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~eE~FGPvl~v~~~~~~~eai~~an~~~~gL~~~vfs~d~~  396 (448)
T TIGR01780       317 ADAVEKGAKVVTGGKRHELGGNFFEPTVLSNVTQDMLVAKEETFGPLAPVFKFDDEEEVIAIANDTEVGLAAYFFSRDLA  396 (448)
T ss_pred             HHHHHCCCEEEeCCCcCCCCCeeEcCEEEecCCCCChHhhCCCCCceEEEEEECCHHHHHHHHhCCCcCceEEEECCCHH
Confidence            99999999999999765456899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhce
Q 011130          430 TANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVK  481 (493)
Q Consensus       430 ~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k  481 (493)
                      .++++++++++|.||||+....++.+||||+|+||+|+++|.+++++|++.|
T Consensus       397 ~~~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~G~~~g~~~~~~~~~~k  448 (448)
T TIGR01780       397 TIWRVAEALEYGMVGINTGLISNVVAPFGGVKQSGLGREGSKYGIEEYLETK  448 (448)
T ss_pred             HHHHHHHhCCccEEEECCCCCCCCCCCCCCcccccCCccchHHHHHHHhccC
Confidence            9999999999999999997766778999999999999999999999999876


No 47 
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=100.00  E-value=3.8e-81  Score=656.38  Aligned_cols=399  Identities=40%  Similarity=0.677  Sum_probs=377.0

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||.||++|++++.++.+|+++++++|++||+  .|+++|..+|.++|++++++|+++.++|++++++|+|||+.++..
T Consensus         1 ~~~p~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~   78 (456)
T cd07107           1 VINPATGQVLARVPAASAADVDRAVAAARAAFP--EWRATTPLERARMLRELATRLREHAEELALIDALDCGNPVSAMLG   78 (456)
T ss_pred             CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHH
Confidence            579999999999999999999999999999999  999999999999999999999999999999999999999999874


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------------------------  207 (493)
                       |+..+++.++|++.+.+.+.+...+.......++.++|+|||                                     
T Consensus        79 -ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~  157 (456)
T cd07107          79 -DVMVAAALLDYFAGLVTELKGETIPVGGRNLHYTLREPYGVVARIVAFNHPLMFAAAKIAAPLAAGNTVVVKPPEQAPL  157 (456)
T ss_pred             -HHHHHHHHHHHHHHHHHHhCCccccCCCCceEEEEEecceEEEEECCcccHHHHHHHHHhHHHHcCCEEEEeCCCCChH
Confidence             999999999999988877776655544445667899999999                                     


Q ss_pred             ---------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccC
Q 011130          208 ---------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCED  272 (493)
Q Consensus       208 ---------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~d  272 (493)
                                     |++|+|++++.++++.|+.||++++|+||||+++|+.|++.+++ +++|+++|+|||||+||++|
T Consensus       158 ~~~~l~~~~~~~lP~gvv~~v~g~~~~~~~~l~~~~~i~~v~fTGs~~~g~~i~~~aa~-~~~~~~lElgG~~p~iV~~d  236 (456)
T cd07107         158 SALRLAELAREVLPPGVFNILPGDGATAGAALVRHPDVKRIALIGSVPTGRAIMRAAAE-GIKHVTLELGGKNALIVFPD  236 (456)
T ss_pred             HHHHHHHHHHHhCCcCcEEEEeCCCchHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhc-CCCeEEEECCCCCeEEECCC
Confidence                           99999998777788999999999999999999999999999888 89999999999999999999


Q ss_pred             CCHHHHHHHHHHHH-HhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHH
Q 011130          273 ADVDKAAELAHYAL-FFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRS  351 (493)
Q Consensus       273 aDl~~aa~~i~~~~-~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~  351 (493)
                      ||+|.|++.|++++ |.++||.|+++++||||+++||+|+++|++++.++++|+|.++++++||++++.+++++.++|++
T Consensus       237 adl~~Aa~~i~~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~v~~~i~~  316 (456)
T cd07107         237 ADPEAAADAAVAGMNFTWCGQSCGSTSRLFVHESIYDEVLARVVERVAAIKVGDPTDPATTMGPLVSRQQYDRVMHYIDS  316 (456)
T ss_pred             CCHHHHHHHHHHhchhhcCCCCCcCCcEEEEcHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCcccCHHHHHHHHHHHHH
Confidence            99999999999995 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCC
Q 011130          352 GVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHN  427 (493)
Q Consensus       352 a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d  427 (493)
                      ++++|+++++||....    ..|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||+++|||+|
T Consensus       317 a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eE~FGPvl~i~~~~~~~eai~~~n~~~~gL~a~vft~d  396 (456)
T cd07107         317 AKREGARLVTGGGRPEGPALEGGFYVEPTVFADVTPGMRIAREEIFGPVLSVLRWRDEAEMVAQANGVEYGLTAAIWTND  396 (456)
T ss_pred             HHHCCCEEEeCCCccccccCCCCceECCEEEECCCCCChhhhCCCCCceEEEEeeCCHHHHHHHHhCCCCcceEEEECCC
Confidence            9999999999996532    358999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          428 LDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       428 ~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      .++++++++++++|+|+||++....+.+||||+|+||+|+++|.+++++||+.|++++++
T Consensus       397 ~~~~~~~~~~l~~G~v~iN~~~~~~~~~pfgG~k~SG~G~~~g~~~~~~~~~~k~v~~~~  456 (456)
T cd07107         397 ISQAHRTARRVEAGYVWINGSSRHFLGAPFGGVKNSGIGREECLEELLSYTQEKNVNVRL  456 (456)
T ss_pred             HHHHHHHHHhcCcCEEEECCCCCCCCCCCcCCcccccCCcCchHHHHHHhhceEEEEEeC
Confidence            999999999999999999998777788999999999999999999999999999998753


No 48 
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00  E-value=1e-80  Score=656.82  Aligned_cols=417  Identities=31%  Similarity=0.450  Sum_probs=384.7

Q ss_pred             ccccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 011130           64 DYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERH  143 (493)
Q Consensus        64 ~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~  143 (493)
                      ...++||||+|+.+.++++++++||+||+++++++.++.+|++++++.|++||+  .|+.++..+|.++|+++++.|+++
T Consensus        14 ~~~~~~i~G~~~~~~~~~~~~~~~P~t~~~i~~~~~a~~~dv~~av~~A~~A~~--~W~~~~~~~R~~iL~~~a~~l~~~   91 (496)
T PLN00412         14 DVYKYYADGEWRTSSSGKSVAITNPSTRKTQYKVQACTQEEVNKAMESAKAAQK--AWAKTPLWKRAELLHKAAAILKEH   91 (496)
T ss_pred             cccCceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHh
Confidence            556899999999766678899999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCc--cC-----CCC-CCceeEEEeeeeeeE--------
Q 011130          144 NDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGL--TA-----PAD-GPYHVQTLHEPIGVA--------  207 (493)
Q Consensus       144 ~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~--~~-----~~~-~~~~~~~~~~PlGVv--------  207 (493)
                      +++|++++++|+|||..++.. |+..+++.++|++..+.+....  ..     +.. .+...++.++|+|||        
T Consensus        92 ~~el~~~~~~e~Gk~~~~a~~-Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~  170 (496)
T PLN00412         92 KAPIAECLVKEIAKPAKDAVT-EVVRSGDLISYTAEEGVRILGEGKFLVSDSFPGNERNKYCLTSKIPLGVVLAIPPFNY  170 (496)
T ss_pred             HHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccccccCCCccCCceeEEEEecceEEEEECCCCc
Confidence            999999999999999999974 9999999999998776654321  11     111 123457889999999        


Q ss_pred             ---------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHH
Q 011130          208 ---------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTG  242 (493)
Q Consensus       208 ---------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g  242 (493)
                                                                   |++|+|++.+.+.++.|..||+|+.|.|||| .+|
T Consensus       171 P~~~~~~~i~~ALaaGN~VIlKPs~~t~~~~~~l~~~l~~aglP~g~~~~v~g~~~~~~~~l~~~~~v~~V~ftGs-~~g  249 (496)
T PLN00412        171 PVNLAVSKIAPALIAGNAVVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGG-DTG  249 (496)
T ss_pred             hHHHHHHHHHHHHHcCCEEEEECCccCcHHHHHHHHHHHHhCCCcccEEEEecCchHHHHHHhcCCCcCEEEEeCh-HHH
Confidence                                                         9999999877778999999999999999999 999


Q ss_pred             HHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcc
Q 011130          243 KIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRV  322 (493)
Q Consensus       243 ~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~  322 (493)
                      +.|++.++   ++|+++|+|||||+||++|||++.|++.+++++|+|+||.|+++++||||++++|+|+++|++++++++
T Consensus       250 ~~v~~~a~---~~~~~lElGG~~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~  326 (496)
T PLN00412        250 IAISKKAG---MVPLQMELGGKDACIVLEDADLDLAAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNAKVAKLT  326 (496)
T ss_pred             HHHHHHhC---CCcEEEEcCCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCCccCeEEEEcHHHHHHHHHHHHHHHHhCc
Confidence            99998764   589999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEe
Q 011130          323 VGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKY  402 (493)
Q Consensus       323 vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~  402 (493)
                      +|+|.+ ++++||++++.+++++.++|++++..|+++++||..   .|+|++|||+.+++++|++++||+||||++|++|
T Consensus       327 ~g~p~~-~~~~gp~i~~~~~~~v~~~i~~a~~~Ga~~l~~~~~---~g~~~~Ptvl~~v~~~~~i~~eE~FgPvl~v~~~  402 (496)
T PLN00412        327 VGPPED-DCDITPVVSESSANFIEGLVMDAKEKGATFCQEWKR---EGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRI  402 (496)
T ss_pred             cCCCcc-cCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEecCCC---CCeEEecEEEeCCCCCCHHHhCcCCCCeEEEEEe
Confidence            999987 789999999999999999999999999999997753   6899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC-CCCCCCccCCCCCCCCCcchHHHHHhhhhce
Q 011130          403 KDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV-FDAAIPFGGYKQSGQGREKGSYSLSNYLQVK  481 (493)
Q Consensus       403 ~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~-~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k  481 (493)
                      +|+||||+++|+++|||+++|||+|.+++.++++++++|+|+||++.. ..+.+||||+|.||+|+++|.+++++||+.|
T Consensus       403 ~~~deai~~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~ft~~k  482 (496)
T PLN00412        403 NSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKVK  482 (496)
T ss_pred             CCHHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCCCCccccccCCCChHHHHHHhcceE
Confidence            999999999999999999999999999999999999999999998754 3457999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q 011130          482 AVVTALKNPA  491 (493)
Q Consensus       482 ~v~~~~~~~~  491 (493)
                      ++++++..+.
T Consensus       483 ~i~~~~~~~~  492 (496)
T PLN00412        483 STVINLPKPS  492 (496)
T ss_pred             EEEEecCCCC
Confidence            9998875543


No 49 
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=100.00  E-value=1.2e-80  Score=655.31  Aligned_cols=414  Identities=30%  Similarity=0.440  Sum_probs=386.0

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      ++||||+|+.+.++++++++||.||++|++++.++.+|+++++++|++||+  .|+++|..+|.++|.+++++|+++.++
T Consensus         2 ~~~i~g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~ai~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~   79 (477)
T TIGR01722         2 NHWIGGKFAEGASGTYIPVTNPATNEVTTKVAFASVDEVDAAVASARETFL--TWGQTSLAQRTSVLLRYQALLKEHRDE   79 (477)
T ss_pred             ceeECCEEecCCCCCeEeeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999776678999999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv------------------  207 (493)
                      |+++++.|+|||+.++.. |+..+++.++|++...+.+.+...+.. .+...+..++|+|||                  
T Consensus        80 l~~~~~~e~Gk~~~~a~~-ev~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~  158 (477)
T TIGR01722        80 IAELITAEHGKTHSDALG-DVARGLEVVEHACGVNSLLKGETSTQVATRVDVYSIRQPLGVCAGITPFNFPAMIPLWMFP  158 (477)
T ss_pred             HHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEEcccceEEEEccCChHHHHHHHHHH
Confidence            999999999999999985 999999999999988877766543321 234567889999998                  


Q ss_pred             -----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhc
Q 011130          208 -----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKS  252 (493)
Q Consensus       208 -----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~  252 (493)
                                                         |++|+|++ +.+.++.|+.||+|++|+||||+.+|+.|++.++. 
T Consensus       159 ~ALaaGN~VilKps~~~p~~~~~l~~~l~~aglP~g~~~~v~g-~~~~~~~L~~~~~v~~V~ftGS~~~g~~v~~~a~~-  236 (477)
T TIGR01722       159 IAIACGNTFVLKPSEKVPSAAVKLAELFSEAGAPDGVLNVVHG-DKEAVDRLLEHPDVKAVSFVGSTPIGRYIHTTGSA-  236 (477)
T ss_pred             HHHhcCCEEEeeCcccChHHHHHHHHHHHHhCcCCCeEEEEeC-CHHHHHHHHcCCCcCEEEEECCHHHHHHHHHHHHh-
Confidence                                               89999998 45668889999999999999999999999999887 


Q ss_pred             CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCc
Q 011130          253 NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQ  332 (493)
Q Consensus       253 ~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~  332 (493)
                      ++||+++|+|||||+||++|||+|.|++.+++++|.|+||.|+++++||||+++ |+|+++|+++++++++|+|.+++++
T Consensus       237 ~~~~v~lElGG~n~~iV~~dADl~~a~~~i~~~~f~~~GQ~C~a~~rl~v~~~~-~~f~~~l~~~~~~~~~G~~~~~~~~  315 (477)
T TIGR01722       237 HGKRVQALGGAKNHMVVMPDADKDAAADALVGAAYGAAGQRCMAISAAVLVGAA-DEWVPEIRERAEKIRIGPGDDPGAE  315 (477)
T ss_pred             cCCeEEEECCCCCceEECCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEeCcH-HHHHHHHHHHHhcCCCCCCCCCCCC
Confidence            899999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHHhCCCEEEeCCccc--C--CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHH
Q 011130          333 QGPQIDSEQFEKILKYIRSGVDGGAKLETGGERL--G--AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEV  408 (493)
Q Consensus       333 ~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~--~--~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~ea  408 (493)
                      +||+++..+++++.++|++++++|+++++||...  .  ..|+|++|||+.+++++|.++++|+||||++|++|+|++||
T Consensus       316 ~Gp~i~~~~~~~~~~~i~~a~~~Ga~il~gg~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~V~~~~~~~ea  395 (477)
T TIGR01722       316 MGPLITPQAKDRVASLIAGGAAEGAEVLLDGRGYKVDGYEEGNWVGPTLLERVPPTMKAYQEEIFGPVLCVLEADTLEEA  395 (477)
T ss_pred             cCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCCCeEECCEEeeCCCCCChhhhCCCCCCeEEEEEeCCHHHH
Confidence            9999999999999999999999999999999752  1  35899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC-CCCCCccCCCCCCCC--CcchHHHHHhhhhceEEEE
Q 011130          409 IQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF-DAAIPFGGYKQSGQG--REKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       409 i~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~-~~~~pfGG~~~SG~G--~~~g~~~l~~~~~~k~v~~  485 (493)
                      |+++|+++|||+++|||+|.+.++++++++++|.||||+.... .+.+||||+|+||+|  +++|.+++++||+.|++++
T Consensus       396 i~~~n~~~~gl~~~v~t~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~~pfgG~k~SG~G~~~~~g~~~l~~~~~~k~i~~  475 (477)
T TIGR01722       396 IALINASPYGNGTAIFTRDGAAARRFQHEIEVGQVGVNVPIPVPLPYFSFTGWKDSFFGDHHIYGKQGTHFYTRGKTVTT  475 (477)
T ss_pred             HHHHhCCCCCCeEEEEcCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCCCCccccccCCCCccChHHHHHHhcCeeEEEE
Confidence            9999999999999999999999999999999999999985443 467899999999999  5889999999999999987


Q ss_pred             e
Q 011130          486 A  486 (493)
Q Consensus       486 ~  486 (493)
                      .
T Consensus       476 ~  476 (477)
T TIGR01722       476 R  476 (477)
T ss_pred             e
Confidence            5


No 50 
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=100.00  E-value=7.8e-81  Score=651.57  Aligned_cols=398  Identities=35%  Similarity=0.587  Sum_probs=374.6

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||+||+++++++.++.+|+++||+.|++||+.+.|+. +..+|.++|++++++|++|+++|++++++|+|||..++..
T Consensus         1 ~~nP~t~~~i~~~~~~~~~~v~~av~~A~~a~~~~~w~~-~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~   79 (455)
T cd07120           1 SIDPATGEVIGTYADGGVAEAEAAIAAARRAFDETDWAH-DPRLRARVLLELADAFEANAERLARLLALENGKILGEARF   79 (455)
T ss_pred             CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCCccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            479999999999999999999999999999998434998 9999999999999999999999999999999999999985


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------------------------  207 (493)
                       |+..+++.++|+++++++..+...+...+...++.++|+|||                                     
T Consensus        80 -Ev~~~i~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~vvlKps~~~~~  158 (455)
T cd07120          80 -EISGAISELRYYAGLARTEAGRMIEPEPGSFSLVLREPMGVAGIIVPWNSPVVLLVRSLAPALAAGCTVVVKPAGQTAQ  158 (455)
T ss_pred             -HHHHHHHHHHHHHHHHHHhcCcccccCCCceEEEEEecceeEEEECCCchHHHHHHHHHHHHHHcCCEEEeECCCCChH
Confidence             999999999999998888766544333345678899999999                                     


Q ss_pred             -----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEc
Q 011130          208 -----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVC  270 (493)
Q Consensus       208 -----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~  270 (493)
                                       |++|+|++.+.++++.|+.||+++.|.||||+.+|+.|++.++. ++||+++|+|||||+||+
T Consensus       159 ~~~~l~~~~~~aag~P~g~~~~v~g~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~-~~~~~~lElGG~~~~IV~  237 (455)
T cd07120         159 INAAIIRILAEIPSLPAGVVNLFTESGSEGAAHLVASPDVDVISFTGSTATGRAIMAAAAP-TLKRLGLELGGKTPCIVF  237 (455)
T ss_pred             HHHHHHHHHHHhcCCCccceEEEecCchhHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHh-cCCeEEEECCCCCeeEEC
Confidence                             88999998777789999999999999999999999999999988 899999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHH
Q 011130          271 EDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIR  350 (493)
Q Consensus       271 ~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~  350 (493)
                      +|+|+|.|++.|++++|.++||.|+++++||||++++|+|+++|+++++++++|+|.++++++||++++.+++++.++|+
T Consensus       238 ~daDl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~~~~~i~  317 (455)
T cd07120         238 DDADLDAALPKLERALTIFAGQFCMAGSRVLVQRSIADEVRDRLAARLAAVKVGPGLDPASDMGPLIDRANVDRVDRMVE  317 (455)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcHHHHHHHHHHHHHHHHhcCcCCCCCCCCCcCCccCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEeCCcccC---CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCC
Q 011130          351 SGVDGGAKLETGGERLG---AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHN  427 (493)
Q Consensus       351 ~a~~~ga~v~~gg~~~~---~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d  427 (493)
                      +++++|+++++||...+   ..|+|++|||+.+++++|.++++|+||||++|++|+|.||||+++|.++|||+++|||+|
T Consensus       318 ~a~~~ga~~~~~g~~~~~~~~~g~~~~Ptvl~~~~~d~~i~~~E~FgPvl~v~~~~~~deai~~~n~~~~gLs~~ift~d  397 (455)
T cd07120         318 RAIAAGAEVVLRGGPVTEGLAKGAFLRPTLLEVDDPDADIVQEEIFGPVLTLETFDDEAEAVALANDTDYGLAASVWTRD  397 (455)
T ss_pred             HHHHCCCEEEeCCccCcccCCCCceECCEEEecCCCCChhhhCcCcCceEEEeecCCHHHHHHHHhCCCCCceEEEEcCC
Confidence            99999999999886433   268999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          428 LDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       428 ~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      .+.++++++++++|+||||++....+.+||||+|+||+|+++|++++++||+.|++++
T Consensus       398 ~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~G~~~g~~~l~~ft~~k~v~~  455 (455)
T cd07120         398 LARAMRVARAIRAGTVWINDWNKLFAEAEEGGYRQSGLGRLHGVAALEDFIEYKHIYL  455 (455)
T ss_pred             HHHHHHHHHhcCcceEEECCCCCCCCCCCcCCccccccCccchHHHHHHHhceeEEeC
Confidence            9999999999999999999987777889999999999999999999999999999863


No 51 
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=100.00  E-value=1.4e-80  Score=653.03  Aligned_cols=408  Identities=32%  Similarity=0.473  Sum_probs=378.3

Q ss_pred             cccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhH
Q 011130           65 YTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHN  144 (493)
Q Consensus        65 ~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~  144 (493)
                      ..++||||+|+.  ++.+++++||+||+++++++.++.+|+++|+++|++|+.     .++..+|.++|.+++++|+++.
T Consensus         3 ~~~~~i~g~~~~--~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~a~~-----~~~~~~R~~~l~~~a~~l~~~~   75 (472)
T TIGR03250         3 AEALRIAGEKVS--RDRVIEVRYPYNGTVVGTVPKASVDDVRRAFAIAAAYRP-----TLTRYERSAILDRAAALLAARK   75 (472)
T ss_pred             CCCceECCEEec--CCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHHHHHHHhH
Confidence            347899999985  457899999999999999999999999999999998764     6789999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCC-----CCCCceeEEEeeee-eeE-----------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP-----ADGPYHVQTLHEPI-GVA-----------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~Pl-GVv-----------  207 (493)
                      ++|++++++|+|||+.++.. |+..+++.++|++.++.+..+...+     .......++.++|+ |||           
T Consensus        76 ~ela~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~Gvv~~I~P~N~P~~  154 (472)
T TIGR03250        76 EEISDLITLESGLSKKDSLY-EVGRVADVLTFAAAEALRDDGQIFSCDLTPHGKARKVFTQREPLLGVISAITPFNHPMN  154 (472)
T ss_pred             HHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEcCCCCEEEEEcCCcHHHH
Confidence            99999999999999999885 9999999999999988776654322     12234568899998 998           


Q ss_pred             ------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHH
Q 011130          208 ------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIV  245 (493)
Q Consensus       208 ------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v  245 (493)
                                                                |++|+|++.+.+.+..|+.||++++|.||||+.+|+.|
T Consensus       155 ~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i  234 (472)
T TIGR03250       155 QVAHKIAPAIATNNRMVVKPSEKTPLSALYLADILYEAGLPPQMLQVVTGDPREIADELITNPHVDLVTFTGGVAIGKYI  234 (472)
T ss_pred             HHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHcCCCcccEEEEecCchHHHHHHhcCCCCCEEEEECcHHHHHHH
Confidence                                                      99999998777788999999999999999999999999


Q ss_pred             HHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCC
Q 011130          246 LQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGD  325 (493)
Q Consensus       246 ~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~  325 (493)
                      ++.++   ++|+++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||++++|+|+++|+++++++++|+
T Consensus       235 ~~~a~---~~~~~lElGGk~p~iV~~dAdl~~aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~G~  311 (472)
T TIGR03250       235 AARAG---YRRQVLELGGNDPLIVMEDADLDRAADLAVKGSYKNSGQRCTAVKRMLVQESVADRFTELLVEKTRAWRYGD  311 (472)
T ss_pred             HHHhc---CCceEEecCCCCeEEECCCCCHHHHHHHHHHHHHHhhCCCCCCCcEEEEeHhHHHHHHHHHHHHHHhcCCCC
Confidence            98764   589999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCH
Q 011130          326 PFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDL  405 (493)
Q Consensus       326 p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~  405 (493)
                      |.++++++||++++.++++++++|++++++|+++++||..   .|+|++|||+.+++++|++++||+||||++|++|+|.
T Consensus       312 p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~vl~gg~~---~g~~~~PTvl~~v~~~~~i~~eE~FGPvl~v~~~~~~  388 (472)
T TIGR03250       312 PMDPSVDMGTVIDEAAAILFEARVNEAIAQGARLLLGNVR---DGALYAPTVLDRVDPSMTLVREETFGPVSPVIRFCDI  388 (472)
T ss_pred             CCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCc---CCEEEcCEEEeCCCCCChHHhCCCcCCeEEEEEeCCH
Confidence            9999999999999999999999999999999999999864   5899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCC-CCCCccCCCCCCCC-CcchHHHHHhhhhceEE
Q 011130          406 DEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFD-AAIPFGGYKQSGQG-REKGSYSLSNYLQVKAV  483 (493)
Q Consensus       406 ~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~-~~~pfGG~~~SG~G-~~~g~~~l~~~~~~k~v  483 (493)
                      +|||+++|+++|||+++|||+|.+.+.++++++++|+||||+.+... +.+||||+|+||+| +++|.+++++|++.|++
T Consensus       389 ~eai~~aN~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~~PfGG~k~SG~G~~~g~~~~l~~ft~~k~i  468 (472)
T TIGR03250       389 DDAIRISNSTAYGLSSGVCTNRLDYITRFIAELQVGTVNVWEVPGYRLELTPFGGIKDSGLGYKEGVQEAMKSFTNLKTY  468 (472)
T ss_pred             HHHHHHHhCCCccceEEEEcCCHHHHHHHHHHCCcceEEEcCCCCCCCCCCCCCccccccCCCCCChHHHHHHhhceEEE
Confidence            99999999999999999999999999999999999999999876544 55899999999999 67889999999999999


Q ss_pred             EEe
Q 011130          484 VTA  486 (493)
Q Consensus       484 ~~~  486 (493)
                      +++
T Consensus       469 ~~~  471 (472)
T TIGR03250       469 SLP  471 (472)
T ss_pred             EEe
Confidence            765


No 52 
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=100.00  E-value=1.7e-80  Score=658.45  Aligned_cols=416  Identities=33%  Similarity=0.550  Sum_probs=384.3

Q ss_pred             ccccceeCCEeeeCCCCCeeeeecCC-CCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 011130           64 DYTQLLINGQFVDSASGKTFPTLDPR-TGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLER  142 (493)
Q Consensus        64 ~~~~~~I~G~~~~~~~~~~~~v~~P~-tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~  142 (493)
                      ...++||||+|+.+  +.+++++||+ ||++|++++.++.+|++++|++|++||+  .|++++..+|.++|++++++|++
T Consensus        35 ~~~~~~i~g~~~~~--~~~~~~~~P~~t~~~i~~~~~a~~~~v~~av~~A~~A~~--~W~~~~~~~R~~~L~~~a~~l~~  110 (514)
T PRK03137         35 QDYPLIIGGERITT--EDKIVSINPANKSEVVGRVSKATKELAEKAMQAALEAFE--TWKKWSPEDRARILLRAAAIIRR  110 (514)
T ss_pred             cccceeECCEEecC--CCeeEeECCCCCCceEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHH
Confidence            34578999999963  5789999999 6999999999999999999999999999  99999999999999999999999


Q ss_pred             hHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhc-CccCCCCCCceeEEEeeeeeeE--------------
Q 011130          143 HNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQ-GLTAPADGPYHVQTLHEPIGVA--------------  207 (493)
Q Consensus       143 ~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~-~~~~~~~~~~~~~~~~~PlGVv--------------  207 (493)
                      +.++|++++++|+|||+.+++. |+..+++.++|++..+++.. +.......+...++.++|+|||              
T Consensus       111 ~~~ela~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~P~GVv~~I~PwN~P~~~~~  189 (514)
T PRK03137        111 RKHEFSAWLVKEAGKPWAEADA-DTAEAIDFLEYYARQMLKLADGKPVESRPGEHNRYFYIPLGVGVVISPWNFPFAIMA  189 (514)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCCccccCCCCceEEEEEecCcEEEEECCCccHHHHHH
Confidence            9999999999999999999985 99999999999999887764 2222222344568899999999              


Q ss_pred             ---------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHH
Q 011130          208 ---------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQL  248 (493)
Q Consensus       208 ---------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~  248 (493)
                                                             |++|+|++.+.++++.|+.||+|++|+||||+.+|+.|++.
T Consensus       190 ~~i~~ALaaGN~VVlKPs~~tp~~a~~l~~~l~~aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGs~~~G~~i~~~  269 (514)
T PRK03137        190 GMTLAAIVAGNTVLLKPASDTPVIAAKFVEVLEEAGLPAGVVNFVPGSGSEVGDYLVDHPKTRFITFTGSREVGLRIYER  269 (514)
T ss_pred             HHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCCCCCcEEEeecCchHHHHHHhcCCCcCEEEEECCcHHHHHHHHH
Confidence                                                   99999999777889999999999999999999999999998


Q ss_pred             Hhhc-----CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhccc
Q 011130          249 AAKS-----NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVV  323 (493)
Q Consensus       249 a~~~-----~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~v  323 (493)
                      +++.     ++||+++|+|||||+||++|||++.|++.|++++|.++||.|+++++||||++++|+|+++|+++++++++
T Consensus       270 aa~~~~~~~~l~~v~lElgGk~~~iV~~daDl~~Aa~~i~~~~~~~~GQ~C~a~~rv~V~~~v~d~f~~~l~~~~~~l~~  349 (514)
T PRK03137        270 AAKVQPGQIWLKRVIAEMGGKDAIVVDEDADLDLAAESIVASAFGFSGQKCSACSRAIVHEDVYDEVLEKVVELTKELTV  349 (514)
T ss_pred             HhcccccccccceEEecCCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCCCccCeEEEEeHHHHHHHHHHHHHHHHhCCC
Confidence            8741     57999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeC
Q 011130          324 GDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK  403 (493)
Q Consensus       324 g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~  403 (493)
                      |+|.++. ++||++++.+++++.++|+++++. +++++||......|+|++|||+.+++++|++++||+||||++|++|+
T Consensus       350 g~p~~~~-~~Gpli~~~~~~~v~~~v~~a~~~-~~vl~Gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FgPvl~v~~~~  427 (514)
T PRK03137        350 GNPEDNA-YMGPVINQASFDKIMSYIEIGKEE-GRLVLGGEGDDSKGYFIQPTIFADVDPKARIMQEEIFGPVVAFIKAK  427 (514)
T ss_pred             CCCCCcc-CcCCCCCHHHHHHHHHHHHHHHhC-CEEEeCCCcCCCCceEEeeEEEeCCCCCCHHHhCCCCCceEEEEecC
Confidence            9999998 999999999999999999999887 69999997655568999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC--CCCCCccCCCCCCCC-CcchHHHHHhhhhc
Q 011130          404 DLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF--DAAIPFGGYKQSGQG-REKGSYSLSNYLQV  480 (493)
Q Consensus       404 ~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~--~~~~pfGG~~~SG~G-~~~g~~~l~~~~~~  480 (493)
                      |++|||+++|+++|||+++|||+|.+.++++++++++|+||||+.+..  .+.+||||+|.||+| +++|.+++++||+.
T Consensus       428 ~~~eai~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~IN~~~~~~~~~~~PfGG~k~SG~G~~~gg~~~l~~ft~~  507 (514)
T PRK03137        428 DFDHALEIANNTEYGLTGAVISNNREHLEKARREFHVGNLYFNRGCTGAIVGYHPFGGFNMSGTDSKAGGPDYLLLFLQA  507 (514)
T ss_pred             CHHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCCCCCcccccCCcccCCHHHHHHhceE
Confidence            999999999999999999999999999999999999999999986543  356899999999999 79999999999999


Q ss_pred             eEEEEe
Q 011130          481 KAVVTA  486 (493)
Q Consensus       481 k~v~~~  486 (493)
                      |+|+..
T Consensus       508 k~v~~~  513 (514)
T PRK03137        508 KTVSEM  513 (514)
T ss_pred             EEEEEe
Confidence            998754


No 53 
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate.  P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=100.00  E-value=2.8e-80  Score=655.17  Aligned_cols=417  Identities=33%  Similarity=0.540  Sum_probs=387.4

Q ss_pred             CccccceeCCEeeeCCCCCeeeeecCC-CCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHH
Q 011130           63 VDYTQLLINGQFVDSASGKTFPTLDPR-TGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLE  141 (493)
Q Consensus        63 ~~~~~~~I~G~~~~~~~~~~~~v~~P~-tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~  141 (493)
                      +..+++||||+|+.  ++.+++++||. ||+++++++.++.+|++++|++|++||+  .|+++|.++|.++|++++++|+
T Consensus        16 ~~~~~~~i~g~~~~--~~~~~~~~~P~~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~   91 (500)
T cd07083          16 GRAYPLVIGGEWVD--TKERMVSVSPFAPSEVVGTTAKADKAEAEAALEAAWAAFK--TWKDWPQEDRARLLLKAADLLR   91 (500)
T ss_pred             cccccceECCEEec--CCCceEeeCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHH
Confidence            44568899999996  35678999998 6999999999999999999999999999  9999999999999999999999


Q ss_pred             HhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccC--CCCCCceeEEEeeeeeeE------------
Q 011130          142 RHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTA--PADGPYHVQTLHEPIGVA------------  207 (493)
Q Consensus       142 ~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~--~~~~~~~~~~~~~PlGVv------------  207 (493)
                      ++.++|++++++|+|||+.++.. |+..+++.++++++++.+..+...  +...+...++.++|+|||            
T Consensus        92 ~~~~ela~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~P~N~P~~~  170 (500)
T cd07083          92 RRRRELIATLTYEVGKNWVEAID-DVAEAIDFIRYYARAALRLRYPAVEVVPYPGEDNESFYVGLGAGVVISPWNFPVAI  170 (500)
T ss_pred             hCHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCCCCCceEEEEEeccceEEEEcCCccHHHH
Confidence            99999999999999999999875 999999999999998887765432  222344567889999998            


Q ss_pred             -----------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHH
Q 011130          208 -----------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVL  246 (493)
Q Consensus       208 -----------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~  246 (493)
                                                               |++|+|++.+.++++.|+.||+||.|+||||+.+|+.|+
T Consensus       171 ~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~eaGlP~gvv~~v~g~~~~~~~~L~~~~~v~~v~ftGs~~~g~~v~  250 (500)
T cd07083         171 FTGMIVAPVAVGNTVIAKPAEDAVVVGYKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLTEHERIRGINFTGSLETGKKIY  250 (500)
T ss_pred             HHHHHHHHHHcCCeEEEeCCCcchHHHHHHHHHHHHcCCCCCceEEEeCCCchhHHHHhcCCCcCEEEEECcHHHHHHHH
Confidence                                                     899999997788899999999999999999999999999


Q ss_pred             HHHhhcCC------CceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhh
Q 011130          247 QLAAKSNL------KPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMK  320 (493)
Q Consensus       247 ~~a~~~~~------~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~  320 (493)
                      +.+++ ++      +|+++|+|||||+||++|||++.|++.+++++|.++||.|+++++||||++++|+|+++|++++.+
T Consensus       251 ~~aa~-~~~~~~~~~~v~lElgG~~~~iV~~dadl~~aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~  329 (500)
T cd07083         251 EAAAR-LAPGQTWFKRLYVETGGKNAIIVDETADFELVVEGVVVSAFGFQGQKCSAASRLILTQGAYEPVLERLLKRAER  329 (500)
T ss_pred             HHHhh-ccccccccCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhhcCCCCCCCeeEEEcHHHHHHHHHHHHHHHHc
Confidence            99887 65      999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEE
Q 011130          321 RVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSIL  400 (493)
Q Consensus       321 ~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~  400 (493)
                      +++|||.++++++||++++.+++++.++|+++++.| ++++||......|+|+.|||+.+++++|++++||+||||++|+
T Consensus       330 ~~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~g-~vl~gg~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~  408 (500)
T cd07083         330 LSVGPPEENGTDLGPVIDAEQEAKVLSYIEHGKNEG-QLVLGGKRLEGEGYFVAPTVVEEVPPKARIAQEEIFGPVLSVI  408 (500)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCC-EEEeCCCcCCCCCeEEccEEEeCCCCCChHhhCCCCCceEEEE
Confidence            999999999999999999999999999999998887 9999997655568999999999999999999999999999999


Q ss_pred             EeC--CHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCC--CCCCccCCCCCCCC-CcchHHHHH
Q 011130          401 KYK--DLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFD--AAIPFGGYKQSGQG-REKGSYSLS  475 (493)
Q Consensus       401 ~~~--~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~--~~~pfGG~~~SG~G-~~~g~~~l~  475 (493)
                      +|+  |++|||+++|+++|||+++|||+|.+.++++++++++|+|+||+.+...  +.+||||+|.||+| +++|.++++
T Consensus       409 ~~~d~~~~eai~~~n~~~~gL~~~v~t~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~~~PfGG~k~SG~G~~~~g~~~l~  488 (500)
T cd07083         409 RYKDDDFAEALEVANSTPYGLTGGVYSRKREHLEEARREFHVGNLYINRKITGALVGVQPFGGFKLSGTNAKTGGPHYLR  488 (500)
T ss_pred             EeCCCCHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCCccccccCCCcccCHHHHH
Confidence            999  9999999999999999999999999999999999999999999875543  56899999999999 689999999


Q ss_pred             hhhhceEEEEe
Q 011130          476 NYLQVKAVVTA  486 (493)
Q Consensus       476 ~~~~~k~v~~~  486 (493)
                      +|++.|+++..
T Consensus       489 ~~~~~k~~~~~  499 (500)
T cd07083         489 RFLEMKAVAER  499 (500)
T ss_pred             HhhheeEEEEc
Confidence            99999998765


No 54 
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=100.00  E-value=2.9e-80  Score=648.33  Aligned_cols=393  Identities=41%  Similarity=0.656  Sum_probs=370.8

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||+||+++++++.++.+|+++++++|++||+  .|+++|..+|.++|++++++|+++.++|++++++|+|||..++..
T Consensus         1 ~~~P~tg~~~~~~~~~~~~~v~~av~~a~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~   78 (446)
T cd07106           1 VINPATGEVFASAPVASEAQLDQAVAAAKAAFP--GWSATPLEERRAALLAIADAIEANAEELARLLTLEQGKPLAEAQF   78 (446)
T ss_pred             CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH
Confidence            479999999999999999999999999999999  999999999999999999999999999999999999999999875


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------------------------  207 (493)
                       |+..+++.++++++...  .+...+...+...+..++|+|||                                     
T Consensus        79 -ev~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~  155 (446)
T cd07106          79 -EVGGAVAWLRYTASLDL--PDEVIEDDDTRRVELRRKPLGVVAAIVPWNFPLLLAAWKIAPALLAGNTVVLKPSPFTPL  155 (446)
T ss_pred             -HHHHHHHHHHHHHhhhh--cCccccCCCCceEEEEEEcceEEEEEcCCChHHHHHHHHHHHHHHcCCEEEEECCccchH
Confidence             99999999999988753  22222222345678999999998                                     


Q ss_pred             ---------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccC
Q 011130          208 ---------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCED  272 (493)
Q Consensus       208 ---------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~d  272 (493)
                                     |++|+|++ +.+++..|+.|+++|.|+||||+.+|+.|++.+++ ++||+++|+|||||+||++|
T Consensus       156 ~~~~l~~~~~~~lP~g~~~~v~g-~~~~~~~l~~~~~vd~V~fTGs~~~g~~v~~~aa~-~~~~~~lElGG~~p~iV~~d  233 (446)
T cd07106         156 CTLKLGELAQEVLPPGVLNVVSG-GDELGPALTSHPDIRKISFTGSTATGKKVMASAAK-TLKRVTLELGGNDAAIVLPD  233 (446)
T ss_pred             HHHHHHHHHHHhCCcCeEEEeeC-ChhHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHh-cCCeeEEecCCCCeeEECCC
Confidence                           89999998 45688999999999999999999999999999988 89999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHH
Q 011130          273 ADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSG  352 (493)
Q Consensus       273 aDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a  352 (493)
                      ||++.|++.+++++|+|+||.|+++++||||++++|+|+++|+++++++++|+|.++++++||++++.+++++.++|+++
T Consensus       234 ADl~~aa~~iv~~~~~~~GQ~C~a~~rv~V~~~v~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~i~~~i~~a  313 (446)
T cd07106         234 VDIDAVAPKLFWGAFINSGQVCAAIKRLYVHESIYDEFCEALVALAKAAVVGDGLDPGTTLGPVQNKMQYDKVKELVEDA  313 (446)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEccccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHH
Q 011130          353 VDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTAN  432 (493)
Q Consensus       353 ~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~  432 (493)
                      +.+|+++++||......|+|++|||+.+++++|+++++|+||||++|++|+|+||||+++|+++|||+++|||+|.+.++
T Consensus       314 ~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~~E~FgPvl~v~~~~~~~eai~~~n~~~~gL~~~i~t~d~~~~~  393 (446)
T cd07106         314 KAKGAKVLAGGEPLDGPGYFIPPTIVDDPPEGSRIVDEEQFGPVLPVLKYSDEDEVIARANDSEYGLGASVWSSDLERAE  393 (446)
T ss_pred             HHCCCEEEeCCCcCCCCCeeEcCEEEeCCCCCCHHHhcCccCCeEEEEeeCCHHHHHHHHhCCCCCceEEEECCCHHHHH
Confidence            99999999999765556899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          433 TLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       433 ~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      ++++++++|+|+||++....+.+||||+|+||+|+++|.+++++||+.|+|+
T Consensus       394 ~~~~~~~~G~v~iN~~~~~~~~~pfGG~~~SG~G~~~g~~~~~~~t~~k~v~  445 (446)
T cd07106         394 AVARRLEAGTVWINTHGALDPDAPFGGHKQSGIGVEFGIEGLKEYTQTQVIN  445 (446)
T ss_pred             HHHHhCCccEEEECCCCCCCCCCCCCCccccccCccchHHHHHHhhceeEEe
Confidence            9999999999999998877889999999999999999999999999999985


No 55 
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of  Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=100.00  E-value=5.5e-80  Score=647.81  Aligned_cols=404  Identities=48%  Similarity=0.810  Sum_probs=379.5

Q ss_pred             CeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChh
Q 011130           81 KTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFE  160 (493)
Q Consensus        81 ~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~  160 (493)
                      .+++++||+||++|++++.++.+|+++++++|++||+.+.|+++|.++|.++|++++++|+++.++|++++++|+|||..
T Consensus         2 ~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~a~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~   81 (462)
T cd07112           2 ETFATINPATGRVLAEVAACDAADVDRAVAAARRAFESGVWSRLSPAERKAVLLRLADLIEAHRDELALLETLDMGKPIS   81 (462)
T ss_pred             CeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHH
Confidence            46889999999999999999999999999999999974469999999999999999999999999999999999999999


Q ss_pred             hhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE---------------------------------
Q 011130          161 QSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA---------------------------------  207 (493)
Q Consensus       161 ~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv---------------------------------  207 (493)
                      ++...|+..+++.++|++.+++++.+...+...+...++.++|+|||                                 
T Consensus        82 ~a~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~i~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~  161 (462)
T cd07112          82 DALAVDVPSAANTFRWYAEAIDKVYGEVAPTGPDALALITREPLGVVGAVVPWNFPLLMAAWKIAPALAAGNSVVLKPAE  161 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCCeEEEEEEeeeeeEEEECCCchHHHHHHHHHHHHHHcCCeeeeeCCC
Confidence            88655999999999999999887766544433445677899999999                                 


Q ss_pred             --------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCce
Q 011130          208 --------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPF  267 (493)
Q Consensus       208 --------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~  267 (493)
                                          |++|+|++.+.++++.|+.|+++++|.||||+.+|+.|++.++..++||+++|+|||||+
T Consensus       162 ~~p~~~~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~l~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~~~~~lelgG~n~~  241 (462)
T cd07112         162 QSPLTALRLAELALEAGLPAGVLNVVPGFGHTAGEALGLHMDVDALAFTGSTEVGRRFLEYSGQSNLKRVWLECGGKSPN  241 (462)
T ss_pred             CCCHHHHHHHHHHHhcCCCCCcEEEEeCCCchHHHHHhcCCCcCEEEEECCHHHHHHHHHHHHHhcCCEEEecCCCCCeE
Confidence                                899999997778899999999999999999999999999988843889999999999999


Q ss_pred             EEccCC-CHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHH
Q 011130          268 IVCEDA-DVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKIL  346 (493)
Q Consensus       268 iV~~da-Dl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~  346 (493)
                      ||++|+ |++.|++.+++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||++++.+++++.
T Consensus       242 iV~~da~dl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~v~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~  321 (462)
T cd07112         242 IVFADAPDLDAAAEAAAAGIFWNQGEVCSAGSRLLVHESIKDEFLEKVVAAAREWKPGDPLDPATRMGALVSEAHFDKVL  321 (462)
T ss_pred             EECCCCcCHHHHHHHHHHHHHhccCCCCCCCeeEEEcHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCcCHHHHHHHH
Confidence            999999 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEeCCcccC--CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEe
Q 011130          347 KYIRSGVDGGAKLETGGERLG--AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVF  424 (493)
Q Consensus       347 ~~i~~a~~~ga~v~~gg~~~~--~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~  424 (493)
                      ++|++++++|+++++||....  ..|+|++|||+.+++++|+++++|+||||++|++|+|.+|||+++|+++|||+++||
T Consensus       322 ~~v~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~fgPvl~v~~~~~~~eai~~~n~~~~gL~~~i~  401 (462)
T cd07112         322 GYIESGKAEGARLVAGGKRVLTETGGFFVEPTVFDGVTPDMRIAREEIFGPVLSVITFDSEEEAVALANDSVYGLAASVW  401 (462)
T ss_pred             HHHHHHHHCCCEEEeCCccCCCCCCCeEEeeEEecCCCCCChHHhCCCCCceEEEEEeCCHHHHHHHHhCCCccceEEEE
Confidence            999999999999999987532  258999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          425 THNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       425 t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      |+|.+.+.++++++++|+|+||+++...+.+||||+|+||+|+++|.+++++|++.|+++
T Consensus       402 t~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~PfgG~k~SG~G~~~g~~~~~~f~~~k~i~  461 (462)
T cd07112         402 TSDLSRAHRVARRLRAGTVWVNCFDEGDITTPFGGFKQSGNGRDKSLHALDKYTELKTTW  461 (462)
T ss_pred             cCCHHHHHHHHHhcCcceEEECCCCCCCCCCCCCCcccccCCccchHHHHHHHhceeEEE
Confidence            999999999999999999999998777788999999999999999999999999999885


No 56 
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=100.00  E-value=3.3e-80  Score=649.19  Aligned_cols=400  Identities=50%  Similarity=0.876  Sum_probs=379.3

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||+||++|++++.++.+++++++++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||..++..
T Consensus         1 ~~~P~t~~~i~~~~~~~~~~v~~av~~a~~A~~--~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~   78 (453)
T cd07115           1 TLNPATGELIARVAQASAEDVDAAVAAARAAFE--AWSAMDPAERGRILWRLAELILANADELARLESLDTGKPIRAARR   78 (453)
T ss_pred             CCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH
Confidence            369999999999999999999999999999999  999999999999999999999999999999999999999999875


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------------------------  207 (493)
                      .|+..+++.+++++.++++..+...+...+...++.++|+|||                                     
T Consensus        79 ~ev~~~i~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~  158 (453)
T cd07115          79 LDVPRAADTFRYYAGWADKIEGEVIPVRGPFLNYTVREPVGVVGAIVPWNFPLMFAAWKVAPALAAGNTVVLKPAELTPL  158 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceecCCCCceEEEEecceeEEEEEcCCCCHHHHHHHHHHHHHhcCCEEEEECCCCCcH
Confidence            6999999999999999888766554444455678899999999                                     


Q ss_pred             ----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEcc
Q 011130          208 ----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCE  271 (493)
Q Consensus       208 ----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~  271 (493)
                                      |++++|++++.++++.|+.||++|.|+||||+.+|+.|++.++. ++||+++|+|||||+||++
T Consensus       159 ~~~~l~~~~~~aGlP~~~~~~v~g~~~~~~~~l~~~~~id~v~fTGs~~~g~~v~~~aa~-~~~~~~lElgG~~p~iV~~  237 (453)
T cd07115         159 SALRIAELMAEAGFPAGVLNVVTGFGEVAGAALVEHPDVDKITFTGSTAVGRKIMQGAAG-NLKRVSLELGGKSANIVFA  237 (453)
T ss_pred             HHHHHHHHHHhcCcCchheEEEecCchhHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhh-cCCeEEEecCCCCceEECC
Confidence                            88999999777788999999999999999999999999999988 8999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHH
Q 011130          272 DADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRS  351 (493)
Q Consensus       272 daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~  351 (493)
                      |||++.|++.|++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||++++.+++++.++|++
T Consensus       238 dAdl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~  317 (453)
T cd07115         238 DADLDAAVRAAATGIFYNQGQMCTAGSRLLVHESIYDEFLERFTSLARSLRPGDPLDPKTQMGPLVSQAQFDRVLDYVDV  317 (453)
T ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCeEEEEcHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHH
Q 011130          352 GVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTA  431 (493)
Q Consensus       352 a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~  431 (493)
                      ++++|+++++||......|+|++|||+.+++++|+++++|+||||++|++|+|.||||+++|+++|||+++|||+|.+.+
T Consensus       318 a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gL~~~ifs~d~~~~  397 (453)
T cd07115         318 GREEGARLLTGGKRPGARGFFVEPTIFAAVPPEMRIAQEEIFGPVVSVMRFRDEEEALRIANGTEYGLAAGVWTRDLGRA  397 (453)
T ss_pred             HHHCCCEEEeCCCCCCCCCceECCEEEecCCCCChHhhCCCcCceEEEEeeCCHHHHHHHHhCCCCCCeEEEECCCHHHH
Confidence            99999999999976544689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          432 NTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       432 ~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      +++++++++|+|+||+++.+.+.+||||+|+||+|+++|.+++++|++.|++++.+
T Consensus       398 ~~~~~~l~~G~v~iN~~~~~~~~~pfGG~~~SG~G~~~g~~~~~~f~~~k~~~~~~  453 (453)
T cd07115         398 HRVAAALKAGTVWINTYNRFDPGSPFGGYKQSGFGREMGREALDEYTEVKSVWVNL  453 (453)
T ss_pred             HHHHHhcCccEEEECCCCCCCCCCCCCCcccccCCcCchHHHHHHhhceEEEEEeC
Confidence            99999999999999998778889999999999999999999999999999998753


No 57 
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans,  D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent,  L-sorbosone dehydrogenase.
Probab=100.00  E-value=4.9e-80  Score=646.85  Aligned_cols=397  Identities=46%  Similarity=0.789  Sum_probs=375.0

Q ss_pred             ecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhc
Q 011130           86 LDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQT  165 (493)
Q Consensus        86 ~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~  165 (493)
                      +||+||++|++++.++.+|++++|+.|++||+.+.|+++|.++|.++|++++++|++|+++|++++++|+|||+.+++. 
T Consensus         2 ~~P~t~~~i~~~~~~~~~~v~~av~~A~~a~~~~~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~-   80 (454)
T cd07118           2 RSPAHGVVVARYAEGTVEDVDAAVAAARKAFDKGPWPRMSGAERAAVLLKVADLIRARRERLALIETLESGKPISQARG-   80 (454)
T ss_pred             CCCCCCCEEEEEeCCCHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH-
Confidence            5999999999999999999999999999999855699999999999999999999999999999999999999999975 


Q ss_pred             cHHHHHHHHHHHHHhhHHhcCccCCC-CCCceeEEEeeeeeeE-------------------------------------
Q 011130          166 EVPMTTRLFRYYAGWADKIQGLTAPA-DGPYHVQTLHEPIGVA-------------------------------------  207 (493)
Q Consensus       166 Ev~~~~~~l~~~a~~~~~~~~~~~~~-~~~~~~~~~~~PlGVv-------------------------------------  207 (493)
                      |+..+++.++|++.+.+++.+...+. ..+...++.++|+|||                                     
T Consensus        81 ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~i~~ALaaGN~Vi~Kps~~~p~  160 (454)
T cd07118          81 EIEGAADLWRYAASLARTLHGDSYNNLGDDMLGLVLREPIGVVGIITPWNFPFLILSQKLPFALAAGCTVVVKPSEFTSG  160 (454)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcccccCCCCceeeEEeecceEEEEECCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCcH
Confidence            99999999999999877776544332 2334567899999999                                     


Q ss_pred             ----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEcc
Q 011130          208 ----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCE  271 (493)
Q Consensus       208 ----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~  271 (493)
                                      |++|+|++++.++++.|+.|+++|+|.||||+++|+.|++.+++ +++++++|+|||||+||++
T Consensus       161 ~~~~l~~~~~~aG~P~g~~~~v~g~~~~~~~~L~~~~~v~~v~ftGs~~~g~~i~~~aa~-~~~~~~lelgG~n~~iV~~  239 (454)
T cd07118         161 TTLMLAELLIEAGLPAGVVNIVTGYGATVGQAMTEHPDVDMVSFTGSTRVGKAIAAAAAR-NLKKVSLELGGKNPQIVFA  239 (454)
T ss_pred             HHHHHHHHHHhcCCCccceEEEecCCchHHHHHhcCCCCCEEEEECcHHHHHHHHHHHHh-cCCcEEeccCCCCceEECC
Confidence                            89999998777789999999999999999999999999999988 8999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHH
Q 011130          272 DADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRS  351 (493)
Q Consensus       272 daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~  351 (493)
                      |||++.|++.|++++|+++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||++++.+++++.++|++
T Consensus       240 dAdl~~aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~L~~~~~~l~~g~p~~~~~~~gpli~~~~~~~~~~~i~~  319 (454)
T cd07118         240 DADLDAAADAVVFGVYFNAGECCNSGSRLLVHESIADAFVAAVVARSRKVRVGDPLDPETKVGAIINEAQLAKITDYVDA  319 (454)
T ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCceEEEcHHHHHHHHHHHHHHHHhcCcCCCCCCCCcCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEeCCcccC-CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHH
Q 011130          352 GVDGGAKLETGGERLG-AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDT  430 (493)
Q Consensus       352 a~~~ga~v~~gg~~~~-~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~  430 (493)
                      ++++|+++++||.... ..|+|++|||+.+++++|+++++|+||||++|++|+|++|||+++|+++|||+++|||+|.+.
T Consensus       320 a~~~ga~v~~gg~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gL~~~vft~d~~~  399 (454)
T cd07118         320 GRAEGATLLLGGERLASAAGLFYQPTIFTDVTPDMAIAREEIFGPVLSVLTFDTVDEAIALANDTVYGLSAGVWSKDIDT  399 (454)
T ss_pred             HHhCCCEEEeCCCCCCCCCCeEEeCEEEeCCCCCCHHHhCCCCCceEEEEEECCHHHHHHHHhCCCccceEEEECCCHHH
Confidence            9999999999997654 468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          431 ANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       431 ~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      ++++++++++|.|+||++....+.+||||+|+||+|+++|++++++||+.|+++
T Consensus       400 ~~~~~~~l~~g~v~iN~~~~~~~~~PfgG~~~SG~G~~~g~~~l~~~t~~k~~~  453 (454)
T cd07118         400 ALTVARRIRAGTVWVNTFLDGSPELPFGGFKQSGIGRELGRYGVEEYTELKTVH  453 (454)
T ss_pred             HHHHHHhcCcCEEEECCCCCCCCCCCcCCcccccCCcCchHHHHHHHhceeEEe
Confidence            999999999999999998777788999999999999999999999999999875


No 58 
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=100.00  E-value=3.8e-80  Score=649.18  Aligned_cols=396  Identities=39%  Similarity=0.631  Sum_probs=373.4

Q ss_pred             eeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhh
Q 011130           83 FPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS  162 (493)
Q Consensus        83 ~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a  162 (493)
                      ++++||+||+++++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||..++
T Consensus         1 ~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a   78 (456)
T cd07145           1 IEVRNPANGEVIDTVPSLSREEVREAIEVAEKAKD--VMSNLPAYKRYKILMKVAELIERRKEELAKLLTIEVGKPIKQS   78 (456)
T ss_pred             CCccCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHH
Confidence            36889999999999999999999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             hhccHHHHHHHHHHHHHhhHHhcCccCCCCC-----CceeEEEeeeeeeE------------------------------
Q 011130          163 AQTEVPMTTRLFRYYAGWADKIQGLTAPADG-----PYHVQTLHEPIGVA------------------------------  207 (493)
Q Consensus       163 ~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~PlGVv------------------------------  207 (493)
                      +. |+..+++.+++++++++.+.+...+.+.     +...++.++|+|||                              
T Consensus        79 ~~-ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VV~K  157 (456)
T cd07145          79 RV-EVERTIRLFKLAAEEAKVLRGETIPVDAYEYNERRIAFTVREPIGVVGAITPFNFPANLFAHKIAPAIAVGNSVVVK  157 (456)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHhcCccccCccccccCCceeEEEEecceeEEEECCCChHHHHHHHHHHHHHHcCCEEEEE
Confidence            86 9999999999999887766655433221     34567889999999                              


Q ss_pred             -----------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCC
Q 011130          208 -----------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGK  264 (493)
Q Consensus       208 -----------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~  264 (493)
                                             |++|+|++++.++++.|+.||++++|.||||+.+|+.|++.+++ +++|+++|+|||
T Consensus       158 ps~~~p~~~~~l~~~~~~ag~p~g~~~~v~g~~~~~~~~l~~~~~v~~V~fTGs~~~g~~i~~~aa~-~~~~v~lElgG~  236 (456)
T cd07145         158 PSSNTPLTAIELAKILEEAGLPPGVINVVTGYGSEVGDEIVTNPKVNMISFTGSTAVGLLIASKAGG-TGKKVALELGGS  236 (456)
T ss_pred             CCccchHHHHHHHHHHHHcCCCcccEEEEeCCCchHHHHHhcCCCCCEEEEECCHHHHHHHHHHHhh-cCCceEEecCCC
Confidence                                   89999999777889999999999999999999999999999998 899999999999


Q ss_pred             CceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHH
Q 011130          265 SPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEK  344 (493)
Q Consensus       265 ~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~  344 (493)
                      ||+||++|||++.|++.|++++|.|+||.|+++++||||++++|+|+++|++++.++++|+|.++++++||++++.++++
T Consensus       237 n~~iV~~dAdl~~aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~  316 (456)
T cd07145         237 DPMIVLKDADLERAVSIAVRGRFENAGQVCNAVKRILVEEEVYDKFLKLLVEKVKKLKVGDPLDESTDLGPLISPEAVER  316 (456)
T ss_pred             CeeEECCCCCHHHHHHHHHHHHHhccCCCCccCeeEEEcHHHHHHHHHHHHHHHhcCCcCCCCCCCCCcCCCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEe
Q 011130          345 ILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVF  424 (493)
Q Consensus       345 ~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~  424 (493)
                      +.++|++++++|+++++||...  .|+|++|||+.+++++|+++++|+||||++|++|+|+||+|+++|+++|||+++||
T Consensus       317 ~~~~i~~a~~~ga~vl~gg~~~--~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gL~~~v~  394 (456)
T cd07145         317 MENLVNDAVEKGGKILYGGKRD--EGSFFPPTVLENDTPDMIVMKEEVFGPVLPIAKVKDDEEAVEIANSTEYGLQASVF  394 (456)
T ss_pred             HHHHHHHHHHCCCEEEeCCCCC--CCeEECCEeecCCCCCChHhhCCCCCceEEEEEECCHHHHHHHHhCCCCCceEEEE
Confidence            9999999999999999999753  38999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhcceeEEEECCcCCCC-CCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          425 THNLDTANTLMRALRVGSVWINCFDVFD-AAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       425 t~d~~~~~~~~~~l~~g~V~VN~~~~~~-~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      |+|.+.+.++++++++|+||||+.+... +.+||||+|+||+|+++|++++++|++.|+|+
T Consensus       395 t~d~~~~~~~~~~~~~g~v~vN~~~~~~~~~~pfgG~~~SG~G~~~g~~~l~~f~~~k~v~  455 (456)
T cd07145         395 TNDINRALKVARELEAGGVVINDSTRFRWDNLPFGGFKKSGIGREGVRYTMLEMTEEKTIV  455 (456)
T ss_pred             CCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCcccccCCcCchHHHHHHhhceeEEe
Confidence            9999999999999999999999876543 57999999999999999999999999999985


No 59 
>PF00171 Aldedh:  Aldehyde dehydrogenase family;  InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation.  The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=100.00  E-value=2.2e-81  Score=659.56  Aligned_cols=405  Identities=48%  Similarity=0.757  Sum_probs=382.9

Q ss_pred             eeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011130           74 FVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETW  153 (493)
Q Consensus        74 ~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~  153 (493)
                      |+.+.+ ++++++||.||++|++++.++.+|+++++++|++||+  .|+.++..+|.++|++++++|+++.++|++++++
T Consensus         1 w~~~~~-~~~~v~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~   77 (462)
T PF00171_consen    1 WVSSES-ETFDVINPATGEVIGEVPSATAEDVDRAVEAARAAFK--EWSKLPAAERARILERFADLLEERRDELAELIAL   77 (462)
T ss_dssp             EEE-TS-SEEEEEETTTECEEEEEEEBSHHHHHHHHHHHHHHHH--HHTTSSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CcCCCC-CEEcCCCCCCcCEEEEEcCCCHHHHHHHHHHHHHHHH--hhhhhhhhhHHHHHHHHHHHHhhccccccccccc
Confidence            787655 7799999999999999999999999999999999999  9999999999999999999999999999999999


Q ss_pred             HcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE--------------------------
Q 011130          154 DNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA--------------------------  207 (493)
Q Consensus       154 e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv--------------------------  207 (493)
                      |+|||+.+++. |+..+++.++|++++++++.+...+.+.+...++.++|+|||                          
T Consensus        78 e~Gk~~~~a~~-ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~ALaaGN~  156 (462)
T PF00171_consen   78 ETGKPIAEARG-EVDRAIDFLRYYADAARKLAGEVLPSDPGSRNYTRREPLGVVLIITPWNFPLYLAVWKIAPALAAGNT  156 (462)
T ss_dssp             HHTSSHHHHHH-HHHHHHHHHHHHHHHHHHHTEEEEEESTTEEEEEEEEE-SEEEEEE-SSSCTHHHHHHHHHHHHTT-E
T ss_pred             ccccccccccc-hhhhhhhhhhhhhhcccceehhhcccccccccccccccccceeecccccccccccccchhhhhccccc
Confidence            99999999997 999999999999999999877665555677889999999999                          


Q ss_pred             ---------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEe
Q 011130          208 ---------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLE  260 (493)
Q Consensus       208 ---------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~le  260 (493)
                                                 |++|+|++.+.+++..|+.||++++|.||||+++|+.|.+.+++ +++|+++|
T Consensus       157 VVlkps~~~~~~~~~l~~~~~~AglP~gvv~vv~g~~~~~~~~l~~~~~v~~v~ftGs~~~g~~i~~~a~~-~~~~v~le  235 (462)
T PF00171_consen  157 VVLKPSEQAPLTALLLAELLEEAGLPPGVVNVVPGDGSEVGEALVSHPDVDLVSFTGSTATGRAIAKAAAK-NLKPVVLE  235 (462)
T ss_dssp             EEEEEBTTSHHHHHHHHHHHHHHTSTTTSEEEECSSTHHHHHHHHHTTTEEEEEEESEHHHHHHHHHHHHT-TTSEEEEE
T ss_pred             ceeeeccccccccccchhhccccccccccccccccccccccceeeeccccceeeecchhhhhhhhhhhccc-cccccccc
Confidence                                       89999999888999999999999999999999999999999887 89999999


Q ss_pred             cCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHH
Q 011130          261 LGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSE  340 (493)
Q Consensus       261 lgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~  340 (493)
                      +|||||+||++|||+|.|++.+++++|+++||.|+++++||||++++|+|+++|+++++++++|+|.++++++||+++..
T Consensus       236 lgG~~p~iV~~daDld~aa~~iv~~~~~~~GQ~C~a~~~v~V~~~i~~~f~~~l~~~~~~l~~g~~~~~~~~~gpl~~~~  315 (462)
T PF00171_consen  236 LGGKNPVIVDPDADLDKAAEAIVRGAFFNSGQSCTAPSRVLVHESIYDEFVEALKERVAKLRVGDPLDESTDVGPLISKA  315 (462)
T ss_dssp             ECEEEEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHTSEBSSTTSTTCSBCHCSSHH
T ss_pred             ccccceeeEecccccccccccccchhcccccccccccccccccccccchhhhhhhhccccccccCCccccccccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCC---cccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCC
Q 011130          341 QFEKILKYIRSGVDGGAKLETGG---ERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQY  417 (493)
Q Consensus       341 ~~~~~~~~i~~a~~~ga~v~~gg---~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~  417 (493)
                      +++++.++|++++.+|+++++||   ......|+|++|||+.++.++|+++++|+||||++|++|+|++|+|+++|+++|
T Consensus       316 ~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~  395 (462)
T PF00171_consen  316 QRERVKALIEDAVAEGAKVLCGGEPQEADPENGFFIPPTVLEDVPPDMPIMQEEIFGPVLPVVPYDDLDEAIALANDSEY  395 (462)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEETSSSSBCSSSSTEEEEEEEESEHTTSHHHHSC-SSSEEEEEEESSHHHHHHHHHHSSE
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccchhhhhcccccCC
Confidence            99999999999999999999999   334568999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCC-CCccCCCCCCCCCcchHHHHHhhhhceEE
Q 011130          418 GLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAA-IPFGGYKQSGQGREKGSYSLSNYLQVKAV  483 (493)
Q Consensus       418 gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~-~pfGG~~~SG~G~~~g~~~l~~~~~~k~v  483 (493)
                      ||+++|||+|.+.++++++++++|+|+||+++..++. +||||+|+||+|+++|.+++++|++.|+|
T Consensus       396 gl~a~v~s~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~~pfgG~~~SG~G~~~g~~~l~~~~~~k~V  462 (462)
T PF00171_consen  396 GLTASVFSRDESRAERLARRLEAGRVWINDPPTGDPDGLPFGGFKQSGIGREGGPEGLDEFTQIKTV  462 (462)
T ss_dssp             ESEEEEECSBHHHHHHHHHHSTSSEEEESSSSTGGTTSSEBE-SGGGEESEBSHHHHHHGTEEEEEE
T ss_pred             CceeEEecccccccccccccccccceeecCCcccccccCCCCCcccccCCcchHHHHHHHhCCccCC
Confidence            9999999999999999999999999999998776655 59999999999999999999999999986


No 60 
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis  and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=100.00  E-value=6.1e-80  Score=647.80  Aligned_cols=397  Identities=45%  Similarity=0.760  Sum_probs=375.7

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||+||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||..+++.
T Consensus         1 ~~~P~t~~~i~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~   78 (457)
T cd07090           1 VIEPATGEVLATVHCAGAEDVDLAVKSAKAAQK--EWSATSGMERGRILRKAADLLRERNDEIARLETIDNGKPIEEARV   78 (457)
T ss_pred             CcCCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH
Confidence            579999999999999999999999999999999  999999999999999999999999999999999999999999875


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------------------------  207 (493)
                       |+..+++.++|++++.+++.+...+...+...++.++|+|||                                     
T Consensus        79 -ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~~~  157 (457)
T cd07090          79 -DIDSSADCLEYYAGLAPTLSGEHVPLPGGSFAYTRREPLGVCAGIGAWNYPIQIASWKSAPALACGNAMVYKPSPFTPL  157 (457)
T ss_pred             -HHHHHHHHHHHHHHHHHHhCCeeeccCCCceEEEEEeecceEEEECCCccHHHHHHHHHHHHHhcCCeeeecCCCcCcH
Confidence             999999999999998888766544433455678899999998                                     


Q ss_pred             ----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEcc
Q 011130          208 ----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCE  271 (493)
Q Consensus       208 ----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~  271 (493)
                                      |++|+|++.+ ++++.|+.|+++++|.||||+.+|+.|++.+++ ++||+++|+|||||+||++
T Consensus       158 ~~~~l~~~~~~aGlP~g~~~~v~g~~-~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~-~~~~~~lelgG~~p~iV~~  235 (457)
T cd07090         158 TALLLAEILTEAGLPDGVFNVVQGGG-ETGQLLCEHPDVAKVSFTGSVPTGKKVMSAAAK-GIKHVTLELGGKSPLIIFD  235 (457)
T ss_pred             HHHHHHHHHHHcCCCcccEEEEeCCh-hhHHHHhcCCCCCEEEEECcHHHHHHHHHHHhc-cCCceEEecCCCCceEECC
Confidence                            8999999854 588999999999999999999999999999988 8999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHH
Q 011130          272 DADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRS  351 (493)
Q Consensus       272 daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~  351 (493)
                      |||++.|++.+++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||+++..+++++.++|++
T Consensus       236 dAdl~~Aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~  315 (457)
T cd07090         236 DADLENAVNGAMMANFLSQGQVCSNGTRVFVQRSIKDEFTERLVERTKKIRIGDPLDEDTQMGALISEEHLEKVLGYIES  315 (457)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEcHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEeCCcccC-----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecC
Q 011130          352 GVDGGAKLETGGERLG-----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTH  426 (493)
Q Consensus       352 a~~~ga~v~~gg~~~~-----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~  426 (493)
                      ++++|+++++||....     ..|+|++|||+.+++++|+++++|+||||++|++|+|+||||+++|+++|||+++|||+
T Consensus       316 a~~~Ga~v~~gg~~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~FgPvl~v~~~~~~deai~~~n~~~~gLsa~i~t~  395 (457)
T cd07090         316 AKQEGAKVLCGGERVVPEDGLENGFYVSPCVLTDCTDDMTIVREEIFGPVMSILPFDTEEEVIRRANDTTYGLAAGVFTR  395 (457)
T ss_pred             HHHCCCEEEECCCcCcccccCCCCeeECCEEEecCCCCChHHhCCCCCCeEEEEEECCHHHHHHHHhCCCcCceEEEEcC
Confidence            9999999999997532     35899999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          427 NLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       427 d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      |.+.++++++++++|+||||+.+...+.+||||+|+||+|+++|.+++++||+.|++++.
T Consensus       396 d~~~~~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~G~~~g~~~~~~f~~~k~~~~~  455 (457)
T cd07090         396 DLQRAHRVIAQLQAGTCWINTYNISPVEVPFGGYKQSGFGRENGTAALEHYTQLKTVYVE  455 (457)
T ss_pred             CHHHHHHHHHhCCcCeEEECCCCCCCCCCCcCCCccCcCCccchHHHHHHHhCeEEEEEe
Confidence            999999999999999999999877778899999999999999999999999999999764


No 61 
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=100.00  E-value=1.4e-79  Score=647.85  Aligned_cols=413  Identities=29%  Similarity=0.445  Sum_probs=378.8

Q ss_pred             ceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 011130           68 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEI  147 (493)
Q Consensus        68 ~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~el  147 (493)
                      +||||+|+.+ ++++++++||.||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++.++|
T Consensus         1 ~~i~g~~~~~-~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el   77 (484)
T TIGR03240         1 LFIDGKWRAG-QGESFSSTNPATQEVLWQGAAASAAQVEAAVAAARAAFP--AWARLSLEERIAVVQRFAALLEERKEAL   77 (484)
T ss_pred             CeECCEEecC-CCCEEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHccCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            5899999865 468899999999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             HHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE--------------------
Q 011130          148 AALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA--------------------  207 (493)
Q Consensus       148 a~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv--------------------  207 (493)
                      ++++++|+|||..++.. |+..+++.+++++....+..+...+...+...++.++|+|||                    
T Consensus        78 a~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~i~~A  156 (484)
T TIGR03240        78 ARVIARETGKPLWETRT-EVASMIGKVAISIKAYHERTGESENPMPDGRAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPA  156 (484)
T ss_pred             HHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCccccCCCCceeEEEEecccEEEEECCCchHHHHHHHHHHHH
Confidence            99999999999999885 999999999998877766655433222234567889999999                    


Q ss_pred             ---------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCC
Q 011130          208 ---------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNL  254 (493)
Q Consensus       208 ---------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~  254 (493)
                                                       |++|+|++ +.+.++.|+.||++|+|+||||+++|+.|++.++....
T Consensus       157 LaaGN~VVlKPs~~tp~t~~~l~~~~~~aGlP~gvv~~v~g-~~~~~~~L~~~~~vd~V~fTGS~~~G~~i~~~aa~~~~  235 (484)
T TIGR03240       157 LLAGNTVVFKPSELTPWVAEETVKLWEKAGLPAGVLNLVQG-ARETGVALAAHPDIDGLLFTGSSNTGHLLHRQFAGRPE  235 (484)
T ss_pred             HHcCCEEEEECCccccHHHHHHHHHHHHhCcCcccEEEEeC-CHHHHHHHhcCCCCCEEEEECCHHHHHHHHHHhhhcCC
Confidence                                             89999998 56788999999999999999999999999998776346


Q ss_pred             CceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhH-HHHHHHHHHHHhhcccCCC-CCCCCc
Q 011130          255 KPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVY-DQFVEKANALAMKRVVGDP-FKGGIQ  332 (493)
Q Consensus       255 ~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~-d~f~~~l~~~~~~~~vg~p-~~~~~~  332 (493)
                      +++++|+|||||+||++|||++.|++.+++++|.|+||.|+++++||||++++ |+|+++|+++++++++|+| .+++++
T Consensus       236 ~~~~lElGGk~p~iV~~dADl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~~~~d~f~~~l~~~~~~~~~g~~~~~~~~~  315 (484)
T TIGR03240       236 KILALEMGGNNPLIVDEVADIDAAVHLIIQSAFISAGQRCTCARRLLVPDGAQGDAFLARLVEVAERLTVGAWDAEPQPF  315 (484)
T ss_pred             CcEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEeccccHHHHHHHHHHHHHhcccCCCCcCCCCc
Confidence            88999999999999999999999999999999999999999999999999985 9999999999999999997 578889


Q ss_pred             cccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHH
Q 011130          333 QGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRS  412 (493)
Q Consensus       333 ~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~  412 (493)
                      +||+++..+++++.++|++++++|+++++||...+..|+|++|||+ +++++|.++++|+||||++|++|+|++|||+++
T Consensus       316 ~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~i~PTvl-~v~~~~~i~~eE~FGPVl~v~~~~~~~eai~~~  394 (484)
T TIGR03240       316 MGAVISLQAAQRLLAAQAKLLALGGKSLLAMRQLDPGAALLTPGII-DVTGVAELPDEEHFGPLLQVIRYDDFDEAIAIA  394 (484)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCEEEcCEEE-ccCCCCHHHhCCCcCCeEEEEEeCCHHHHHHHH
Confidence            9999999999999999999999999999988654456899999999 688999999999999999999999999999999


Q ss_pred             HcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC-CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          413 NASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV-FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       413 n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~-~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      |+++|||+++|||+|.+.++++++++++|+||||+... ..+.+||||+|+||+|+++|..+++ |++.|++++.+
T Consensus       395 n~~~~gL~~~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~~pfGG~~~SG~g~~~g~~~~~-~~~~~~~~~~~  469 (484)
T TIGR03240       395 NNTRFGLSAGLLSDDRELYDRFLLEIRAGIVNWNKPLTGASSAAPFGGIGASGNHRPSAYYAAD-YCAYPVASLEA  469 (484)
T ss_pred             hCCCCCceEEEEcCCHHHHHHHHHhCCcceEEEECCCCCCCCCCCcCCcccccCCCCCchHHHh-heeeeEEEEec
Confidence            99999999999999999999999999999999998654 3467899999999999999966655 99999999985


No 62 
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=100.00  E-value=8e-80  Score=648.60  Aligned_cols=407  Identities=26%  Similarity=0.312  Sum_probs=365.7

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHH-ccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKA-FDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A-~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      ++||||+|+.+ ++.+++++||+||+++++++.++ +|+++||++|++| |+  .|+++|..+|.++|++++++|+++++
T Consensus         2 ~~~I~g~~~~~-~~~~~~~~nP~tg~~~~~~~~~~-~dv~~Av~~A~~A~~~--~W~~~~~~~Ra~~L~~~a~~l~~~~~   77 (513)
T cd07128           2 QSYVAGQWHAG-TGDGRTLHDAVTGEVVARVSSEG-LDFAAAVAYAREKGGP--ALRALTFHERAAMLKALAKYLMERKE   77 (513)
T ss_pred             ceeECCEEEcC-CCCEEEeECCCCCCEEEEEcCCH-HHHHHHHHHHHHhhhc--hhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            67999999975 36789999999999999999876 8999999999997 68  89999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcC--------ccCCCCC-C-ceeEEEeee-eeeE-------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG--------LTAPADG-P-YHVQTLHEP-IGVA-------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~--------~~~~~~~-~-~~~~~~~~P-lGVv-------  207 (493)
                      +|+++ ++|+|||+.+++. |+..+++.++||++++++...        ...+... . ...++.++| +|||       
T Consensus        78 ~la~l-~~e~Gkp~~ea~~-Ev~~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~pwN  155 (513)
T cd07128          78 DLYAL-SAATGATRRDSWI-DIDGGIGTLFAYASLGRRELPNAHFLVEGDVEPLSKDGTFVGQHILTPRRGVAVHINAFN  155 (513)
T ss_pred             HHHHH-HHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCccccceEEEEecccEEEEECCcc
Confidence            99996 8999999999985 999999999999998877542        2222211 1 235677999 5998       


Q ss_pred             -----------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcH
Q 011130          208 -----------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTT  240 (493)
Q Consensus       208 -----------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~  240 (493)
                                                                     |++|+|++.+.++++.|   +.+|+|+||||++
T Consensus       156 ~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~eaG~lP~gv~~~v~g~~~~~~~~l---~~~d~v~fTGS~~  232 (513)
T cd07128         156 FPVWGMLEKFAPALLAGVPVIVKPATATAYLTEAVVKDIVESGLLPEGALQLICGSVGDLLDHL---GEQDVVAFTGSAA  232 (513)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHhCCCCCCcEEEecCChHHHhccc---CCCCEEEEECCHH
Confidence                                                           68999998644444433   5789999999999


Q ss_pred             HHHHHHHHH--hhcCCCceeEecCCCCceEEccCCC-----HHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHH
Q 011130          241 TGKIVLQLA--AKSNLKPVTLELGGKSPFIVCEDAD-----VDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEK  313 (493)
Q Consensus       241 ~g~~v~~~a--~~~~~~pv~lelgG~~p~iV~~daD-----l~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~  313 (493)
                      +|+.|++.+  ++ +++|+++|||||||+||++|||     +|.+++.+++++|.|+||.|++++|+|||+++||+|+++
T Consensus       233 ~G~~i~~~a~~a~-~~~~~~lElGGknp~IV~~DAd~~~~dld~aa~~iv~~~f~~aGQ~C~a~~rv~V~~~i~d~f~~~  311 (513)
T cd07128         233 TAAKLRAHPNIVA-RSIRFNAEADSLNAAILGPDATPGTPEFDLFVKEVAREMTVKAGQKCTAIRRAFVPEARVDAVIEA  311 (513)
T ss_pred             HHHHHHHHhhhhc-cCceEEEeccCcCcEEECCCCCcchhhHHHHHHHHHHHHHHhcCCcccCCceEEEehHHHHHHHHH
Confidence            999999985  35 7899999999999999999999     999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCccc-------CCCCceeeceEEecCCC--C
Q 011130          314 ANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERL-------GAKGYYIKPTVFTGVKD--D  384 (493)
Q Consensus       314 l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~-------~~~g~~~~Ptvl~~~~~--~  384 (493)
                      |+++++++++|||.++++++||++++.+++++.++|+++++. +++++||...       ...|+|++|||+.++++  +
T Consensus       312 l~~~~~~l~~G~p~~~~~~lGpli~~~~~~~i~~~i~~a~~~-A~vl~GG~~~~~~~~~~~~~g~~~~PTvl~~v~~~~~  390 (513)
T cd07128         312 LKARLAKVVVGDPRLEGVRMGPLVSREQREDVRAAVATLLAE-AEVVFGGPDRFEVVGADAEKGAFFPPTLLLCDDPDAA  390 (513)
T ss_pred             HHHHHHhcccCCCccCCCCcCCCCCHHHHHHHHHHHHHHHhC-CEEEECCCccccccCCCCCCCEEECCEEEeccCCccc
Confidence            999999999999999999999999999999999999999988 9999999652       13589999999998887  4


Q ss_pred             ccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcc--eeEEEECCcCC---------CCC
Q 011130          385 MLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALR--VGSVWINCFDV---------FDA  453 (493)
Q Consensus       385 ~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~--~g~V~VN~~~~---------~~~  453 (493)
                      |.+++||+||||++|++|+|+||+|+++|+++|||+++|||+|.+.+++++++++  +|+||||+.++         ..+
T Consensus       391 ~~i~~eE~FGPVl~V~~~~~~deai~~aN~~~~gL~asvft~d~~~~~~~~~~l~~~~G~v~IN~~~~~~~~~~~~~~~~  470 (513)
T cd07128         391 TAVHDVEAFGPVATLMPYDSLAEAIELAARGRGSLVASVVTNDPAFARELVLGAAPYHGRLLVLNRDSAKESTGHGSPLP  470 (513)
T ss_pred             chHHhCCCcCCeEEEEeeCCHHHHHHHHhcCCCCeeEEEEeCCHHHHHHHHHHHHhhCCEEEEcCCccccccccccCCCC
Confidence            8999999999999999999999999999999999999999999999999999997  99999998642         246


Q ss_pred             CCCccCCCCCCCCCc-chHHHHHhhhhceEEE
Q 011130          454 AIPFGGYKQSGQGRE-KGSYSLSNYLQVKAVV  484 (493)
Q Consensus       454 ~~pfGG~~~SG~G~~-~g~~~l~~~~~~k~v~  484 (493)
                      .+||||+|.||+|++ +|.+++++|++.|+|.
T Consensus       471 ~~pfGG~k~SG~G~~~gg~~~l~~~~~~k~v~  502 (513)
T cd07128         471 QLVHGGPGRAGGGEELGGLRGVKHYMQRTAVQ  502 (513)
T ss_pred             CCCCCCcccCCCCcccccHHHHHHhheeeeee
Confidence            789999999999999 4799999999999874


No 63 
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=100.00  E-value=9.1e-80  Score=646.34  Aligned_cols=396  Identities=44%  Similarity=0.762  Sum_probs=373.9

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||+||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||..++..
T Consensus         1 ~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~   78 (456)
T cd07110           1 VINPATEATIGEIPAATAEDVDAAVRAARRAFP--RWKKTTGAERAKYLRAIAEGVRERREELAELEARDNGKPLDEAAW   78 (456)
T ss_pred             CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH
Confidence            479999999999999999999999999999999  999999999999999999999999999999999999999999875


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcC---ccCCCC-CCceeEEEeeeeeeE---------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQG---LTAPAD-GPYHVQTLHEPIGVA---------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~---~~~~~~-~~~~~~~~~~PlGVv---------------------------------  207 (493)
                       |+..+++.++|++++++++..   ...+.. .+...++.++|+|||                                 
T Consensus        79 -ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~  157 (456)
T cd07110          79 -DVDDVAGCFEYYADLAEQLDAKAERAVPLPSEDFKARVRREPVGVVGLITPWNFPLLMAAWKVAPALAAGCTVVLKPSE  157 (456)
T ss_pred             -HHHHHHHHHHHHHHHHHHhhccCCccccCCCCCceeEEEEecceeEEEECCCChHHHHHHHHHHHHHHcCCEEEEECcc
Confidence             999999999999998887642   222221 244578899999999                                 


Q ss_pred             --------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCce
Q 011130          208 --------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPF  267 (493)
Q Consensus       208 --------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~  267 (493)
                                          |++|+|++++.+.++.|+.||++++|+||||+.+|+.|++.+++ +++|+++|+|||||+
T Consensus       158 ~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~~~v~~V~fTGs~~~g~~v~~~aa~-~~~~~~lElgG~~~~  236 (456)
T cd07110         158 LTSLTELELAEIAAEAGLPPGVLNVVTGTGDEAGAPLAAHPGIDKISFTGSTATGSQVMQAAAQ-DIKPVSLELGGKSPI  236 (456)
T ss_pred             cchHHHHHHHHHHHHcCCCCCcEEEEecCchHHHHHHhcCCCCCEEEEECCHHHHHHHHHHHhh-cCCeEEEEcCCCCee
Confidence                                89999999777789999999999999999999999999999988 899999999999999


Q ss_pred             EEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHH
Q 011130          268 IVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILK  347 (493)
Q Consensus       268 iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~  347 (493)
                      ||++|+|++.|++.|++++|+++||.|+++++||||++++|+|+++|+++++++++|+|.++++++||++++.+++++.+
T Consensus       237 iV~~dadl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~~~~~  316 (456)
T cd07110         237 IVFDDADLEKAVEWAMFGCFWNNGQICSATSRLLVHESIADAFLERLATAAEAIRVGDPLEEGVRLGPLVSQAQYEKVLS  316 (456)
T ss_pred             EECCCCCHHHHHHHHHHHHHhcCCCCCCCCceEEEcHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEeCCcccC--CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEec
Q 011130          348 YIRSGVDGGAKLETGGERLG--AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFT  425 (493)
Q Consensus       348 ~i~~a~~~ga~v~~gg~~~~--~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t  425 (493)
                      +|++++.+|+++++||....  +.|+|+.|||+.+++++|.++++|+||||++|++|+|.||||+++|+++|||+++|||
T Consensus       317 ~v~~a~~~Ga~~~~gg~~~~~~~~~~~~~Ptvl~~v~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gL~~~v~t  396 (456)
T cd07110         317 FIARGKEEGARLLCGGRRPAHLEKGYFIAPTVFADVPTDSRIWREEIFGPVLCVRSFATEDEAIALANDSEYGLAAAVIS  396 (456)
T ss_pred             HHHHHHhCCCEEEeCCCcccccCCCCcCCCEEEecCCCCChHhhCCCcCCeEEEEecCCHHHHHHHHhCCCCCceEEEEC
Confidence            99999999999999997643  4689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          426 HNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       426 ~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +|.++++++++++++|+|+||+++...+.+||||+|+||+|+++|++++++|++.|+++
T Consensus       397 ~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~~~~~k~i~  455 (456)
T cd07110         397 RDAERCDRVAEALEAGIVWINCSQPCFPQAPWGGYKRSGIGRELGEWGLDNYLEVKQIT  455 (456)
T ss_pred             CCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCcccccCCccchHHHHHHhcceeEEe
Confidence            99999999999999999999997767788999999999999999999999999999985


No 64 
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=100.00  E-value=1.4e-79  Score=652.23  Aligned_cols=415  Identities=34%  Similarity=0.505  Sum_probs=384.7

Q ss_pred             cccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhH
Q 011130           65 YTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHN  144 (493)
Q Consensus        65 ~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~  144 (493)
                      ...++|.|.|.  .++++++++||+||++|++++.++.+|++++|++|++|++  .|+++|..+|.++|++++++|+++.
T Consensus        18 ~~~~~~~~~~~--~~~~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~iL~~~a~~l~~~~   93 (524)
T PRK09407         18 RLRRLTARVDG--AAGPTREVTAPFTGEPLATVPVSTAADVEAAFARARAAQR--AWAATPVRERAAVLLRFHDLVLENR   93 (524)
T ss_pred             HHHHHHhhcCC--CCCCEEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHccCCHHHHHHHHHHHHHHHHHhH
Confidence            45678888885  4788999999999999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCC-C--CCCceeEEEeeeeeeE--------------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP-A--DGPYHVQTLHEPIGVA--------------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~-~--~~~~~~~~~~~PlGVv--------------  207 (493)
                      ++|++++++|+|||..++.. |+..++..++|++..+++....... .  ......+..++|+|||              
T Consensus        94 ~ela~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~Pl~~~~  172 (524)
T PRK09407         94 EELLDLVQLETGKARRHAFE-EVLDVALTARYYARRAPKLLAPRRRAGALPVLTKTTELRQPKGVVGVISPWNYPLTLAV  172 (524)
T ss_pred             HHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhhCCccccccCCCCceEEEEEecceEEEEEeCCCChHHHHH
Confidence            99999999999999999875 9999999999999888776543221 1  1124678899999999              


Q ss_pred             ---------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHH
Q 011130          208 ---------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQL  248 (493)
Q Consensus       208 ---------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~  248 (493)
                                                             |++|+|++++.++++.|+.|  +|.|+||||+.+|+.|++.
T Consensus       173 ~~~~~ALaaGN~VIlKPs~~tp~~~~~l~~ll~eaGlP~gvv~~v~g~~~~~~~~L~~~--~d~V~fTGs~~~g~~v~~~  250 (524)
T PRK09407        173 SDAIPALLAGNAVVLKPDSQTPLTALAAVELLYEAGLPRDLWQVVTGPGPVVGTALVDN--ADYLMFTGSTATGRVLAEQ  250 (524)
T ss_pred             HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCcccEEEEecCCchHHHHHHhc--CCEEEEECCHHHHHHHHHH
Confidence                                                   99999999877888999986  7899999999999999999


Q ss_pred             HhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCC
Q 011130          249 AAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFK  328 (493)
Q Consensus       249 a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~  328 (493)
                      +++ +++|+++|+|||||+||++|||++.|++.|++++|.|+||.|+++++||||++++|+|+++|++++.++++|+|.+
T Consensus       251 aa~-~~~~v~lElGGknp~iV~~dADl~~Aa~~i~~~~f~~sGQ~C~a~~rv~V~~~v~d~f~~~L~~~~~~l~~G~~~~  329 (524)
T PRK09407        251 AGR-RLIGFSLELGGKNPMIVLDDADLDKAAAGAVRACFSNAGQLCISIERIYVHESIYDEFVRAFVAAVRAMRLGAGYD  329 (524)
T ss_pred             HHh-cCCcEEEECCCCceeEECCCCCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            988 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC-CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHH
Q 011130          329 GGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG-AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDE  407 (493)
Q Consensus       329 ~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~-~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~e  407 (493)
                      +++++||++++.+++++.++|++++++|+++++||.... ..|+|++|||+.+++++|.++++|+||||++|++|+|+||
T Consensus       330 ~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gG~~~~~~~g~~~~Ptvl~~v~~~~~i~~eE~FGPvl~v~~~~~~de  409 (524)
T PRK09407        330 YSADMGSLISEAQLETVSAHVDDAVAKGATVLAGGKARPDLGPLFYEPTVLTGVTPDMELAREETFGPVVSVYPVADVDE  409 (524)
T ss_pred             cCCccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCceEeCEEEeCCCCCChHHhCCCCCCeEEEEeeCCHHH
Confidence            999999999999999999999999999999999997433 2579999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC---CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          408 VIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV---FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       408 ai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~---~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      ||+++|+++|||+++|||+|.+++.++++++++|.||||+...   .++.+||||+|+||+|+++|.+++++|++.|+|+
T Consensus       410 ai~~~N~~~~gLsa~V~t~d~~~a~~~~~~l~~G~v~IN~~~~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~ft~~k~v~  489 (524)
T PRK09407        410 AVERANDTPYGLNASVWTGDTARGRAIAARIRAGTVNVNEGYAAAWGSVDAPMGGMKDSGLGRRHGAEGLLKYTESQTIA  489 (524)
T ss_pred             HHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCcCcCCCCCCCCCccccccCccchHHHHHHhCCeEEEE
Confidence            9999999999999999999999999999999999999998643   3567899999999999999999999999999998


Q ss_pred             EeC
Q 011130          485 TAL  487 (493)
Q Consensus       485 ~~~  487 (493)
                      +..
T Consensus       490 ~~~  492 (524)
T PRK09407        490 TQR  492 (524)
T ss_pred             Ecc
Confidence            764


No 65 
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=100.00  E-value=9.8e-80  Score=645.41  Aligned_cols=397  Identities=40%  Similarity=0.619  Sum_probs=374.6

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWP-RMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSA  163 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~-~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~  163 (493)
                      ++||+||++|++++.++.+|+++++++|++||+  .|+ ++|..+|.++|++++++|+++.++|++++++|+|||+.++.
T Consensus         1 ~~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~--~w~w~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~   78 (459)
T cd07089           1 VINPATEEVIGTAPDAGAADVDAAIAAARRAFD--TGDWSTDAEERARCLRQLHEALEARKEELRALLVAEVGAPVMTAR   78 (459)
T ss_pred             CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--hhhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHH
Confidence            479999999999999999999999999999999  899 99999999999999999999999999999999999997765


Q ss_pred             hccHHHHHHHHHHHHHhhHHhcCccC-CCC----CCceeEEEeeeeeeE-------------------------------
Q 011130          164 QTEVPMTTRLFRYYAGWADKIQGLTA-PAD----GPYHVQTLHEPIGVA-------------------------------  207 (493)
Q Consensus       164 ~~Ev~~~~~~l~~~a~~~~~~~~~~~-~~~----~~~~~~~~~~PlGVv-------------------------------  207 (493)
                      ..|+..+++.++|+++.+++..+... +..    .+...++.++|+|||                               
T Consensus        79 ~~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~P~~~~~~~~~~AL~aGN~vvlKp  158 (459)
T cd07089          79 AMQVDGPIGHLRYFADLADSFPWEFDLPVPALRGGPGRRVVRREPVGVVAAITPWNFPFFLNLAKLAPALAAGNTVVLKP  158 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCceecCcccccCCCceeEEEEeeccEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEEC
Confidence            56999999999999998887655432 221    245678999999999                               


Q ss_pred             ----------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCC
Q 011130          208 ----------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKS  265 (493)
Q Consensus       208 ----------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~  265 (493)
                                            |++|+|++.+.+++..|+.||+++.|.||||+.+|+.|++.+++ ++||+++|+||||
T Consensus       159 s~~~p~~~~~l~~~~~~aglP~g~~~~v~g~~~~~~~~l~~~~~~~~v~ftGs~~~g~~v~~~aa~-~~~~~~lelgG~n  237 (459)
T cd07089         159 APDTPLSALLLGEIIAETDLPAGVVNVVTGSDNAVGEALTTDPRVDMVSFTGSTAVGRRIMAQAAA-TLKRVLLELGGKS  237 (459)
T ss_pred             CCCChHHHHHHHHHHHHcCCCccceEEEecCcHHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHHh-cCCcEEEECCCCC
Confidence                                  89999999777788999999999999999999999999999988 8999999999999


Q ss_pred             ceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHH
Q 011130          266 PFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKI  345 (493)
Q Consensus       266 p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~  345 (493)
                      |+||++|||++.|++.|++++|.|+||.|+++++||||++++|+|+++|+++++++++|+|.++++++||++++.+++++
T Consensus       238 ~~iV~~dadl~~aa~~i~~~~~~~sGQ~C~a~~~v~V~~~v~~~f~~~l~~~~~~~~~g~p~~~~~~~gp~i~~~~~~~v  317 (459)
T cd07089         238 ANIVLDDADLAAAAPAAVGVCMHNAGQGCALTTRLLVPRSRYDEVVEALAAAFEALPVGDPADPGTVMGPLISAAQRDRV  317 (459)
T ss_pred             eeEECCCCCHHHHHHHHHHHHHHhcCCcccCCeEEEEcHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCEEEeCCcccC--CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEE
Q 011130          346 LKYIRSGVDGGAKLETGGERLG--AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGV  423 (493)
Q Consensus       346 ~~~i~~a~~~ga~v~~gg~~~~--~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v  423 (493)
                      .++|++++++|+++++||....  ..|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||+++|
T Consensus       318 ~~~i~~a~~~Ga~~l~gg~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~deai~~~n~~~~gL~~~v  397 (459)
T cd07089         318 EGYIARGRDEGARLVTGGGRPAGLDKGFYVEPTLFADVDNDMRIAQEEIFGPVLVVIPYDDDDEAVRIANDSDYGLSGGV  397 (459)
T ss_pred             HHHHHHHHHCCCEEEeCCCcCCCCCCCeEECCEEEEcCCCCCHHHhCCCcCceEEEeccCCHHHHHHHHhCCCCCCeEEE
Confidence            9999999999999999997543  36899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          424 FTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       424 ~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      ||+|.+.++++++++++|+|+||+....++.+||||+|+||+|+++|.+++++|++.|+|+
T Consensus       398 ~t~d~~~~~~~~~~~~~G~v~iN~~~~~~~~~PfgG~k~SG~G~~~g~~~l~~ft~~k~v~  458 (459)
T cd07089         398 WSADVDRAYRVARRIRTGSVGINGGGGYGPDAPFGGYKQSGLGRENGIEGLEEFLETKSIA  458 (459)
T ss_pred             EcCCHHHHHHHHHhcCcCeEEECCCCCCCCCCCcCCcccccCCCCchHHHHHHhhceeEEe
Confidence            9999999999999999999999998777788999999999999999999999999999986


No 66 
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=100.00  E-value=2.4e-79  Score=642.83  Aligned_cols=395  Identities=44%  Similarity=0.717  Sum_probs=372.6

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWP-RMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSA  163 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~-~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~  163 (493)
                      ++||+||++|++++.++.+|+++++++|++||+  .|. ++|.++|.++|++++++|+++.++|++++++|+|||..+++
T Consensus         1 ~~~P~tg~~i~~~~~~~~~dv~~av~~a~~A~~--~~~~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~   78 (454)
T cd07109           1 VFDPSTGEVFARIARGGAADVDRAVQAARRAFE--SGWLRLSPAERGRLLLRIARLIREHADELARLESLDTGKPLTQAR   78 (454)
T ss_pred             CcCCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHH
Confidence            479999999999999999999999999999998  776 99999999999999999999999999999999999999988


Q ss_pred             hccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE------------------------------------
Q 011130          164 QTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA------------------------------------  207 (493)
Q Consensus       164 ~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv------------------------------------  207 (493)
                      . |+..+++.++|++++.+++.+...+...+...+..++|+|||                                    
T Consensus        79 ~-ev~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p  157 (454)
T cd07109          79 A-DVEAAARYFEYYGGAADKLHGETIPLGPGYFVYTVREPHGVTGHIIPWNYPLQITGRSVAPALAAGNAVVVKPAEDAP  157 (454)
T ss_pred             H-HHHHHHHHHHHHHHHHHHhcCcccccCCCceEEEEEeeeeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCCh
Confidence            5 999999999999998888776555443455678999999999                                    


Q ss_pred             -----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEc
Q 011130          208 -----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVC  270 (493)
Q Consensus       208 -----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~  270 (493)
                                       |++|+|++.+.+.++.|+.||++|.|+||||+.+|+.|++.+++ ++||+++|+|||||+||+
T Consensus       158 ~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~L~~~~~v~~v~ftGs~~~g~~i~~~aa~-~~~p~~lElgG~~~~iV~  236 (454)
T cd07109         158 LTALRLAELAEEAGLPAGALNVVTGLGAEAGAALVAHPGVDHISFTGSVETGIAVMRAAAE-NVVPVTLELGGKSPQIVF  236 (454)
T ss_pred             HHHHHHHHHHHHcCcCccceEEEecCchHHHHHHhcCCCCCEEEEECCHHHHHHHHHHHhh-cCCcEEEECCCCCceEEC
Confidence                             99999998777888999999999999999999999999999888 899999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHH
Q 011130          271 EDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIR  350 (493)
Q Consensus       271 ~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~  350 (493)
                      +|||++.|++.|++++|.++||.|+++++||||++++|+|+++|+++++++++|+|.+ .+++||++++.+++++.++|+
T Consensus       237 ~daDl~~Aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~~~~G~p~~-~~~~gpli~~~~~~~~~~~i~  315 (454)
T cd07109         237 ADADLEAALPVVVNAIIQNAGQTCSAGSRLLVHRSIYDEVLERLVERFRALRVGPGLE-DPDLGPLISAKQLDRVEGFVA  315 (454)
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCccCcEEEEcHHHHHHHHHHHHHHHHhCCCCCCcc-cCcCCCccCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999986 689999999999999999999


Q ss_pred             HHHhCCCEEEeCCcccC---CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCC
Q 011130          351 SGVDGGAKLETGGERLG---AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHN  427 (493)
Q Consensus       351 ~a~~~ga~v~~gg~~~~---~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d  427 (493)
                      +++++|+++++||....   ..|+|++|||+.+++++|.+++||+||||++|++|+|+||||+++|+++|||+++|||+|
T Consensus       316 ~a~~~ga~~l~gg~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~fgPvl~v~~~~~~deAi~~~n~~~~gL~~~i~t~d  395 (454)
T cd07109         316 RARARGARIVAGGRIAEGAPAGGYFVAPTLLDDVPPDSRLAQEEIFGPVLAVMPFDDEAEAIALANGTDYGLVAGVWTRD  395 (454)
T ss_pred             HHHhCCCEEEeCCCcCcccCCCCcEECcEEEecCCCCChhhhCCCCCceEEEEecCCHHHHHHHhhCCCCCceEEEECCC
Confidence            99999999999987533   368999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcceeEEEECCcC-CCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          428 LDTANTLMRALRVGSVWINCFD-VFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       428 ~~~~~~~~~~l~~g~V~VN~~~-~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      .+.+.++++++++|+|+||++. ..++.+||||+|+||+|+++|.+++++|++.|+++
T Consensus       396 ~~~~~~~~~~l~~g~v~iN~~~~~~~~~~pfgG~k~SG~G~~~g~~~~~~f~~~k~i~  453 (454)
T cd07109         396 GDRALRVARRLRAGQVFVNNYGAGGGIELPFGGVKKSGHGREKGLEALYNYTQTKTVA  453 (454)
T ss_pred             HHHHHHHHHhcCcCeEEECCCCCCCCCCCCcCCcccCcCCccchHHHHHHHhceeEEe
Confidence            9999999999999999999976 45678999999999999999999999999999885


No 67 
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related  sequences are included in this CD.  The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+  and exhibited a broad substrate preference, including vanillin,  benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=100.00  E-value=1.8e-79  Score=643.88  Aligned_cols=396  Identities=40%  Similarity=0.648  Sum_probs=374.8

Q ss_pred             eeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhh
Q 011130           83 FPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS  162 (493)
Q Consensus        83 ~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a  162 (493)
                      ++++||+||++|++++.++.+|++++|++|++||+  .|+++|..+|.++|++++++|+++.++|++++++|+|||+.++
T Consensus         1 ~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a   78 (451)
T cd07150           1 FDDLNPADGSVYARVAVGSRQDAERAIAAAYDAFP--AWAATTPSERERILLKAAEIMERRADDLIDLLIDEGGSTYGKA   78 (451)
T ss_pred             CCccCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHH
Confidence            46789999999999999999999999999999999  9999999999999999999999999999999999999999998


Q ss_pred             hhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE----------------------------------
Q 011130          163 AQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA----------------------------------  207 (493)
Q Consensus       163 ~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv----------------------------------  207 (493)
                      .. |+..+++.+++++.++++..+...+.. .+...+..++|+|||                                  
T Consensus        79 ~~-ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VilKps~~  157 (451)
T cd07150          79 WF-ETTFTPELLRAAAGECRRVRGETLPSDSPGTVSMSVRRPLGVVAGITPFNYPLILATKKVAFALAAGNTVVLKPSEE  157 (451)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEecccEEEEECCCccHHHHHHHHHHHHHhcCCeEEEECCcc
Confidence            75 999999999999999888766554433 344567899999998                                  


Q ss_pred             -------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceE
Q 011130          208 -------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFI  268 (493)
Q Consensus       208 -------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~i  268 (493)
                                         |++|+|++.+.++++.|+.|++||+|.||||+.+|+.|++.+++ +++|+++|+|||||+|
T Consensus       158 ~p~t~~~l~~~~~~ag~P~g~v~~v~g~~~~~~~~l~~~~~v~~V~ftGs~~~g~~i~~~aa~-~~~~~~lelGG~~~~i  236 (451)
T cd07150         158 TPVIGLKIAEIMEEAGLPKGVFNVVTGGGAEVGDELVDDPRVRMVTFTGSTAVGREIAEKAGR-HLKKITLELGGKNPLI  236 (451)
T ss_pred             CcHHHHHHHHHHHHhCCCcCcEEEeeCCCcHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhh-cCCceEeecCCCCeeE
Confidence                               89999998777889999999999999999999999999999988 8999999999999999


Q ss_pred             EccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHH
Q 011130          269 VCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKY  348 (493)
Q Consensus       269 V~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~  348 (493)
                      |++|||+|.|++.|++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||++++.+++++.++
T Consensus       237 V~~dadl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~  316 (451)
T cd07150         237 VLADADLDYAVRAAAFGAFMHQGQICMSASRIIVEEPVYDEFVKKFVARASKLKVGDPRDPDTVIGPLISPRQVERIKRQ  316 (451)
T ss_pred             ECCCCChHHHHHHHHHHHHhhcCCCCCCCeeEEEcHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCH
Q 011130          349 IRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNL  428 (493)
Q Consensus       349 i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~  428 (493)
                      |++++.+|+++++||..   .|+|++|||+.+++++|.++++|+||||++|++|+|+||||+++|+++|||+++|||+|.
T Consensus       317 i~~a~~~Ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gL~a~v~t~d~  393 (451)
T cd07150         317 VEDAVAKGAKLLTGGKY---DGNFYQPTVLTDVTPDMRIFREETFGPVTSVIPAKDAEEALELANDTEYGLSAAILTNDL  393 (451)
T ss_pred             HHHHHhCCCEEEeCCcc---CCcEEcCEEEeCCCCCCHHHhCCCcCceEEEEEeCCHHHHHHHHhCCCCCCeEEEEeCCH
Confidence            99999999999999864   489999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcceeEEEECCcCCCC-CCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          429 DTANTLMRALRVGSVWINCFDVFD-AAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       429 ~~~~~~~~~l~~g~V~VN~~~~~~-~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      +.++++++++++|+|+||++.... +.+||||+|+||+|+++|.+++++||+.|+|++
T Consensus       394 ~~~~~~~~~l~~G~v~iN~~~~~~~~~~pfgG~~~SG~G~~~g~~~l~~~~~~k~v~~  451 (451)
T cd07150         394 QRAFKLAERLESGMVHINDPTILDEAHVPFGGVKASGFGREGGEWSMEEFTELKWITV  451 (451)
T ss_pred             HHHHHHHHhcCcCEEEECCCCCCCCCCCCcCCccccccCcCCcHHHHHHhheeeEEeC
Confidence            999999999999999999976544 679999999999999999999999999999863


No 68 
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=100.00  E-value=7.5e-79  Score=646.40  Aligned_cols=413  Identities=29%  Similarity=0.425  Sum_probs=381.4

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCC-CCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRT-GDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~t-g~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      -.||+|+|..  ++++++++||+| |++|++++.++.+|+++++++|++||+  .|+.++.++|.++|++++++|+++.+
T Consensus        34 ~p~i~g~~~~--~~~~~~v~~P~t~g~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~  109 (518)
T cd07125          34 IPIINGEETE--TGEGAPVIDPADHERTIGEVSLADAEDVDAALAIAAAAFA--GWSATPVEERAEILEKAADLLEANRG  109 (518)
T ss_pred             CceECCEEee--CCCeEEEECCCCCCceEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHH
Confidence            4589999983  678999999999 999999999999999999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCcc-CCCCCCceeEEEeeeeeeE-----------------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLT-APADGPYHVQTLHEPIGVA-----------------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~-~~~~~~~~~~~~~~PlGVv-----------------  207 (493)
                      +|++++++|+|||+.++.. |+..+++.++++++++++..+.. .+...+...++.++|+|||                 
T Consensus       110 ~la~~~~~e~Gk~~~~a~~-ev~~~i~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~GVV~~I~p~N~P~~~~~~~i  188 (518)
T cd07125         110 ELIALAAAEAGKTLADADA-EVREAIDFCRYYAAQARELFSDPELPGPTGELNGLELHGRGVFVCISPWNFPLAIFTGQI  188 (518)
T ss_pred             HHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCCccccCCCCceeEEEEecccEEEEECCcchHHHHHHHHH
Confidence            9999999999999999985 99999999999999888765432 2322345568899999998                 


Q ss_pred             ------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhh
Q 011130          208 ------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAK  251 (493)
Q Consensus       208 ------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~  251 (493)
                                                          |++|+|++.+.+++..|+.|+++|+|+||||+.+|+.|++.+++
T Consensus       189 ~~ALaaGN~VVlKps~~tp~~~~~l~~ll~eaGlP~gvv~vv~g~~~~~~~~L~~~~~vd~V~ftGs~~~g~~i~~~aa~  268 (518)
T cd07125         189 AAALAAGNTVIAKPAEQTPLIAARAVELLHEAGVPRDVLQLVPGDGEEIGEALVAHPRIDGVIFTGSTETAKLINRALAE  268 (518)
T ss_pred             HHHHHcCCEEEEeCCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCchhhHHHHhcCCCcCEEEEECCHHHHHHHHHHhhh
Confidence                                                99999998766688999999999999999999999999998875


Q ss_pred             c--CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCC
Q 011130          252 S--NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKG  329 (493)
Q Consensus       252 ~--~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~  329 (493)
                      .  .++|+++|+|||||+||++|||++.|++.|++++|.|+||.|+++++||||++++|+|+++|++++.++++|+|.++
T Consensus       269 ~~~~~~~v~lElgGk~p~iV~~dADl~~Aa~~iv~g~f~nsGQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~  348 (518)
T cd07125         269 RDGPILPLIAETGGKNAMIVDSTALPEQAVKDVVQSAFGSAGQRCSALRLLYLQEEIAERFIEMLKGAMASLKVGDPWDL  348 (518)
T ss_pred             ccCCCceEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEcchhHHHHHHHHHHHHhcCCccCCCCC
Confidence            2  37899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeC--CHHH
Q 011130          330 GIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK--DLDE  407 (493)
Q Consensus       330 ~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~--~~~e  407 (493)
                      ++++||++++.+++++.++|++++. ++++++||......|+|++|||+.++  +|.++++|+||||++|++|+  |+||
T Consensus       349 ~~~~gpli~~~~~~~v~~~i~~a~~-~~~vl~gg~~~~~~g~~~~Ptvl~~v--~~~i~~eE~FgPVl~v~~~~~~~~de  425 (518)
T cd07125         349 STDVGPLIDKPAGKLLRAHTELMRG-EAWLIAPAPLDDGNGYFVAPGIIEIV--GIFDLTTEVFGPILHVIRFKAEDLDE  425 (518)
T ss_pred             CCCcCCCcCHHHHHHHHHHHHHHHh-CCEEEeCCCcCCCCCeEEccEEEeec--CChHhhCcccCCeEEEEEeCCCCHHH
Confidence            9999999999999999999999987 47899998753336899999999888  89999999999999999999  9999


Q ss_pred             HHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC--CCCCCccCCCCCCCC-CcchHHHHHhhhhceEEE
Q 011130          408 VIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF--DAAIPFGGYKQSGQG-REKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       408 ai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~--~~~~pfGG~~~SG~G-~~~g~~~l~~~~~~k~v~  484 (493)
                      ||+++|+++|||+++|||+|.+.++++++++++|+||||+++..  .+.+||||+|+||+| +++|.+++++|++.|+++
T Consensus       426 Ai~~~n~~~~gLta~Vft~d~~~~~~~~~~l~~G~V~IN~~~~~~~~~~~PfGG~~~SG~G~~~gg~~~~~~ft~~k~i~  505 (518)
T cd07125         426 AIEDINATGYGLTLGIHSRDEREIEYWRERVEAGNLYINRNITGAIVGRQPFGGWGLSGTGPKAGGPNYLLRFGNEKTVS  505 (518)
T ss_pred             HHHHHhCCCCCceEEEEeCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCCCCCcccccCCcccccHHHHHHhcceEEEE
Confidence            99999999999999999999999999999999999999987653  367899999999999 578899999999999998


Q ss_pred             EeC
Q 011130          485 TAL  487 (493)
Q Consensus       485 ~~~  487 (493)
                      +.+
T Consensus       506 ~~~  508 (518)
T cd07125         506 LNT  508 (518)
T ss_pred             EEc
Confidence            875


No 69 
>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions.  This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3  and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.
Probab=100.00  E-value=9.5e-79  Score=641.45  Aligned_cols=411  Identities=36%  Similarity=0.514  Sum_probs=385.1

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHHHHHHHhH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRM-TAYERSKIILRFADLLERHN  144 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~-~~~~R~~iL~~la~~l~~~~  144 (493)
                      +++||||+|+.+. +++++++||+||+++++++.++.+|+++++++|++||+  .|+++ +..+|.++|++++++|++++
T Consensus         2 ~~~~i~g~~~~~~-~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~~R~~~L~~~a~~l~~~~   78 (473)
T cd07082           2 FKYLINGEWKESS-GKTIEVYSPIDGEVIGSVPALSALEILEAAETAYDAGR--GWWPTMPLEERIDCLHKFADLLKENK   78 (473)
T ss_pred             CCceECCEEecCC-CCeEeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            4689999999764 68899999999999999999999999999999999999  99988 99999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-----CCceeEEEeeeeeeE------------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-----GPYHVQTLHEPIGVA------------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~PlGVv------------  207 (493)
                      ++|++++++|+|||..++.. |+..+++.++++++..+++.+...+..     .+...+..++|+|||            
T Consensus        79 ~el~~~~~~e~Gk~~~~a~~-ev~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~  157 (473)
T cd07082          79 EEVANLLMWEIGKTLKDALK-EVDRTIDYIRDTIEELKRLDGDSLPGDWFPGTKGKIAQVRREPLGVVLAIGPFNYPLNL  157 (473)
T ss_pred             HHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcccccccccCCCceeEEEEecceEEEEECCcCcHHHH
Confidence            99999999999999999875 999999999999998887765543322     234567899999998            


Q ss_pred             -----------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHH
Q 011130          208 -----------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVL  246 (493)
Q Consensus       208 -----------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~  246 (493)
                                                               |+++++++.+.++++.|..|+++|.|+||||+++|+.|.
T Consensus       158 ~~~~i~~AL~aGN~vilKps~~~~~~~~~l~~~l~~aglp~~~~~vv~g~~~~~~~~l~~~~~v~~V~ftGs~~~g~~i~  237 (473)
T cd07082         158 TVSKLIPALIMGNTVVFKPATQGVLLGIPLAEAFHDAGFPKGVVNVVTGRGREIGDPLVTHGRIDVISFTGSTEVGNRLK  237 (473)
T ss_pred             HHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHcCCCccceEEEecCcHHHHHHHhcCCCCCEEEEECcHHHHHHHH
Confidence                                                     899999997777889999999999999999999999999


Q ss_pred             HHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCC
Q 011130          247 QLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDP  326 (493)
Q Consensus       247 ~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p  326 (493)
                      +.++   ++|+++|+|||||+||++|||++.|++.+++++|.++||.|+++++||||++++|+|+++|.++++++++|+|
T Consensus       238 ~~a~---~~~~~lelgg~n~~iV~~dadl~~aa~~i~~~~~~~~GQ~C~a~~~v~v~~~i~d~f~~~l~~~~~~~~~g~~  314 (473)
T cd07082         238 KQHP---MKRLVLELGGKDPAIVLPDADLELAAKEIVKGALSYSGQRCTAIKRVLVHESVADELVELLKEEVAKLKVGMP  314 (473)
T ss_pred             HHhC---CCcEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHHhCCCcCCCCeEEEEcHHHHHHHHHHHHHHHhcCCCCCC
Confidence            8875   5899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHH
Q 011130          327 FKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLD  406 (493)
Q Consensus       327 ~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~  406 (493)
                      .++++++||+++..+++++.+++++++.+|+++++||...  .|+|+.|||+.+++++|+++++|+||||++|++|+|++
T Consensus       315 ~~~~~~~gp~i~~~~~~~~~~~~~~a~~~ga~~~~gg~~~--~g~~~~Ptvl~~~~~~~~~~~eE~fgPvl~v~~~~~~~  392 (473)
T cd07082         315 WDNGVDITPLIDPKSADFVEGLIDDAVAKGATVLNGGGRE--GGNLIYPTLLDPVTPDMRLAWEEPFGPVLPIIRVNDIE  392 (473)
T ss_pred             CCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccC--CCeEEeeEEEecCCCCCHHHhCcCcCceEEEEEeCCHH
Confidence            9999999999999999999999999999999999999753  38999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCC-CCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          407 EVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFD-AAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       407 eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~-~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      |+|+++|+++|||+++|||+|.+.+.++++++++|+||||+++... +.+||||+|+||+|+++|.+++++|++.|++++
T Consensus       393 eai~~~n~~~~gL~~~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~~pfGG~k~SG~g~~~g~~~l~~~~~~k~i~~  472 (473)
T cd07082         393 EAIELANKSNYGLQASIFTKDINKARKLADALEVGTVNINSKCQRGPDHFPFLGRKDSGIGTQGIGDALRSMTRRKGIVI  472 (473)
T ss_pred             HHHHHHhCCCCCceEEEEeCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCcccccccCCCChHHHHHHhhceeEEEE
Confidence            9999999999999999999999999999999999999999976544 568999999999999999999999999999875


No 70 
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=100.00  E-value=7.3e-79  Score=639.64  Aligned_cols=398  Identities=46%  Similarity=0.793  Sum_probs=375.5

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||+||++|++++.++.+++++++++|++|++++.|+++|.++|.++|++++++|.+++++|++++++|+|||..++..
T Consensus         1 ~~~P~tg~~i~~~~~~~~~~v~~av~~a~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~   80 (457)
T cd07114           1 SINPATGEPWARVPEASAADVDRAVAAARAAFEGGAWRKLTPTERGKLLRRLADLIEANAEELAELETRDNGKLIRETRA   80 (457)
T ss_pred             CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            47999999999999999999999999999999744699999999999999999999999999999999999999999885


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE------------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA------------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv------------------------------------  207 (493)
                       |+..+++.+++++.+.+++.+...+.. .+...++.++|+|||                                    
T Consensus        81 -ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~Vilkps~~~p  159 (457)
T cd07114          81 -QVRYLAEWYRYYAGLADKIEGAVIPVDKGDYLNFTRREPLGVVAAITPWNSPLLLLAKKLAPALAAGNTVVLKPSEHTP  159 (457)
T ss_pred             -HHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEEecceEEEEECCCccHHHHHHHHHHHHHhcCCeEEeECCccch
Confidence             999999999999988877765544433 345678899999999                                    


Q ss_pred             -----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEc
Q 011130          208 -----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVC  270 (493)
Q Consensus       208 -----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~  270 (493)
                                       |++|+|++.+.+.++.|+.|+++++|+||||+.+|+.|++.+++ ++||+++|+|||||+||+
T Consensus       160 ~~~~~l~~~l~~aglP~~vv~~v~g~~~~~~~~l~~~~~i~~V~ftGs~~~g~~v~~~aa~-~~~~~~lelgG~~~~iV~  238 (457)
T cd07114         160 ASTLELAKLAEEAGFPPGVVNVVTGFGPETGEALVEHPLVAKIAFTGGTETGRHIARAAAE-NLAPVTLELGGKSPNIVF  238 (457)
T ss_pred             HHHHHHHHHHHHcCcCCCcEEEEeCCCchHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHh-cCCeEEEecCCCCeeEEC
Confidence                             89999999777788999999999999999999999999999988 899999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHH
Q 011130          271 EDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIR  350 (493)
Q Consensus       271 ~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~  350 (493)
                      +|||++.|++.|++++|+++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||++++.+++++.++|+
T Consensus       239 ~dAdl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~v~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~  318 (457)
T cd07114         239 DDADLDAAVNGVVAGIFAAAGQTCVAGSRLLVQRSIYDEFVERLVARARAIRVGDPLDPETQMGPLATERQLEKVERYVA  318 (457)
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCceEEEcHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecC
Q 011130          351 SGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTH  426 (493)
Q Consensus       351 ~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~  426 (493)
                      +++++|+++++||....    ..|+|++|||+.++.+++.++++|+||||++|++|+|.||||+++|+++|||+++|||+
T Consensus       319 ~a~~~ga~~l~gg~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~deai~~~n~~~~gL~~~ift~  398 (457)
T cd07114         319 RAREEGARVLTGGERPSGADLGAGYFFEPTILADVTNDMRIAQEEVFGPVLSVIPFDDEEEAIALANDSEYGLAAGIWTR  398 (457)
T ss_pred             HHHHCCCEEEeCCCccccccCCCCCEECCEEEeCCCCCChhhhcCCcCceEEEeccCCHHHHHHHhhCCCcCceeEEECC
Confidence            99999999999997543    35899999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          427 NLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       427 d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      |.+.++++++++++|+|+||+.+...+.+||||+|+||+|+++|.+++++|++.|+++
T Consensus       399 d~~~~~~~~~~l~~g~v~iN~~~~~~~~~pfgG~k~SG~G~~~g~~~~~~f~~~k~~~  456 (457)
T cd07114         399 DLARAHRVARAIEAGTVWVNTYRALSPSSPFGGFKDSGIGRENGIEAIREYTQTKSVW  456 (457)
T ss_pred             CHHHHHHHHHhcCcceEEECCCCCCCCCCCCCCCccCcCCccchHHHHHHHhceeEEe
Confidence            9999999999999999999998777888999999999999999999999999999985


No 71 
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=100.00  E-value=4.4e-79  Score=636.45  Aligned_cols=379  Identities=27%  Similarity=0.385  Sum_probs=350.1

Q ss_pred             CCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHH
Q 011130          100 GEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAG  179 (493)
Q Consensus       100 ~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~  179 (493)
                      ....|+++++++|++||+  .|+++|..+|.++|++++++|++|.++|++++++|+|||..++...|+..+++.++|+++
T Consensus         7 ~~~~~v~~av~~a~~af~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~l~~e~GKp~~~a~~~Ev~~~~~~~~~~~~   84 (484)
T PLN02174          7 FGAADASILVTELRRSFD--DGVTRGYEWRVTQLKKLMIICDNHEPEIVAALRDDLGKPELESSVYEVSLLRNSIKLALK   84 (484)
T ss_pred             cCHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999  999999999999999999999999999999999999999988876699999999999999


Q ss_pred             hhHHhcC----ccCCCCCCceeEEEeeeeeeE------------------------------------------------
Q 011130          180 WADKIQG----LTAPADGPYHVQTLHEPIGVA------------------------------------------------  207 (493)
Q Consensus       180 ~~~~~~~----~~~~~~~~~~~~~~~~PlGVv------------------------------------------------  207 (493)
                      .+++..+    ...+...+...++.++|+|||                                                
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKPse~tp~~~~~l~~l~~~  164 (484)
T PLN02174         85 QLKNWMAPEKAKTSLTTFPASAEIVSEPLGVVLVISAWNYPFLLSIDPVIGAISAGNAVVLKPSELAPASSALLAKLLEQ  164 (484)
T ss_pred             HHHHHhcccccccccccCCcceEEEEecceEEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH
Confidence            8876655    222222234568899999999                                                


Q ss_pred             ----eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHH
Q 011130          208 ----GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAH  283 (493)
Q Consensus       208 ----gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~  283 (493)
                          |++|+|+|. .+.+..|+. +++|+|+||||+.+|+.|++.+++ ++||+++|||||||+||++|||++.|++.++
T Consensus       165 ~lp~gvv~vv~G~-~~~~~~l~~-~~vd~V~FTGS~~~G~~I~~~aa~-~l~~v~LELGGk~p~iV~~dADl~~Aa~~i~  241 (484)
T PLN02174        165 YLDSSAVRVVEGA-VTETTALLE-QKWDKIFYTGSSKIGRVIMAAAAK-HLTPVVLELGGKSPVVVDSDTDLKVTVRRII  241 (484)
T ss_pred             hCCCCEEEEEECC-hHHHHHHhc-ccCCEEEEECChHHHHHHHHHHHh-cCCcEEEecCCCCeEEEcCCCCHHHHHHHHH
Confidence                999999984 445666775 899999999999999999999998 9999999999999999999999999999999


Q ss_pred             HHHH-hhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeC
Q 011130          284 YALF-FNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETG  362 (493)
Q Consensus       284 ~~~~-~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~g  362 (493)
                      +++| .|+||.|++++|||||++++|+|+++|+++++++++|+|.+ ++++||++++.+++++.++|+++ .+|+++++|
T Consensus       242 ~g~f~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~G~p~~-~~~~Gpli~~~~~~~v~~~i~~a-~~ga~~~~G  319 (484)
T PLN02174        242 AGKWGCNNGQACISPDYILTTKEYAPKVIDAMKKELETFYGKNPME-SKDMSRIVNSTHFDRLSKLLDEK-EVSDKIVYG  319 (484)
T ss_pred             HHHhhCCCCCCCCcCcEEEEeHHHHHHHHHHHHHHHHhhcCCCCcc-cCCcCCCCCHHHHHHHHHHHHHH-HcCCEEEEC
Confidence            9999 69999999999999999999999999999999999999987 78999999999999999999998 789999999


Q ss_pred             CcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeE
Q 011130          363 GERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGS  442 (493)
Q Consensus       363 g~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~  442 (493)
                      |... ..|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.+.++++++++++|.
T Consensus       320 G~~~-~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~eai~~aN~~~~gLaa~vft~d~~~a~~~~~~l~aG~  398 (484)
T PLN02174        320 GEKD-RENLKIAPTILLDVPLDSLIMSEEIFGPLLPILTLNNLEESFDVIRSRPKPLAAYLFTHNKKLKERFAATVSAGG  398 (484)
T ss_pred             CCcC-CCCCEEEEEEEecCCCCChhhcCCcCCCeEEEecCCCHHHHHHHHhCCCCCeEEEEEcCCHHHHHHHHHcCCcce
Confidence            9753 368999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCcCCCC--CCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          443 VWINCFDVFD--AAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       443 V~VN~~~~~~--~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      |+||++....  +.+||||+|+||+|+++|.+++++||+.|+|++.
T Consensus       399 v~IN~~~~~~~~~~~PfGG~k~SG~Gr~~G~~gl~~ft~~K~v~~~  444 (484)
T PLN02174        399 IVVNDIAVHLALHTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYR  444 (484)
T ss_pred             EEECCCcCCCCCCCCCCCCcCccccCccchHHHHHHhcceEEEEEC
Confidence            9999875443  6789999999999999999999999999999876


No 72 
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=100.00  E-value=7.1e-79  Score=638.23  Aligned_cols=393  Identities=31%  Similarity=0.441  Sum_probs=367.2

Q ss_pred             eeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhh
Q 011130           84 PTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS  162 (493)
Q Consensus        84 ~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~-w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a  162 (493)
                      +++||+||+++++++.++.+|++++|++|++||+  . |+.+|.++|.++|++++++|+++.++|++++++|+|||..++
T Consensus         2 ~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~a~~--~~~~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a   79 (455)
T cd07148           2 EVVNPFDLKPIGEVPTVDWAAIDKALDTAHALFL--DRNNWLPAHERIAILERLADLMEERADELALLIAREGGKPLVDA   79 (455)
T ss_pred             CccCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHh--hcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            5789999999999999999999999999999998  6 567999999999999999999999999999999999999998


Q ss_pred             hhccHHHHHHHHHHHHHhhHHhcCccCCCC-----CCceeEEEeeeeeeE------------------------------
Q 011130          163 AQTEVPMTTRLFRYYAGWADKIQGLTAPAD-----GPYHVQTLHEPIGVA------------------------------  207 (493)
Q Consensus       163 ~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~PlGVv------------------------------  207 (493)
                      .. |+..+++.+++++..++++.+...+..     .+...++.++|+|||                              
T Consensus        80 ~~-ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlK  158 (455)
T cd07148          80 KV-EVTRAIDGVELAADELGQLGGREIPMGLTPASAGRIAFTTREPIGVVVAISAFNHPLNLIVHQVAPAIAAGCPVIVK  158 (455)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEEEEecceEEEEECCCCcHHHHHHHHHHHHHHcCCEEEee
Confidence            85 999999999999998887765433321     234568899999998                              


Q ss_pred             -----------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCC
Q 011130          208 -----------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGK  264 (493)
Q Consensus       208 -----------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~  264 (493)
                                             |++|+|++. .+.++.|+.||+||+|+||||+++|+.|++.++. + +|+++|+|||
T Consensus       159 ps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~-~~~~~~L~~~~~v~~v~fTGs~~~G~~i~~~aa~-~-~~~~lElGG~  235 (455)
T cd07148         159 PALATPLSCLAFVDLLHEAGLPEGWCQAVPCE-NAVAEKLVTDPRVAFFSFIGSARVGWMLRSKLAP-G-TRCALEHGGA  235 (455)
T ss_pred             CCCcccHHHHHHHHHHHHcCCCcCcEEEEeCC-hHHHHHHhcCCCCCEEEEECCHHHHHHHHHHhhc-C-CcEEEecCCC
Confidence                                   999999984 4678999999999999999999999999998875 4 8999999999


Q ss_pred             CceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHH
Q 011130          265 SPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEK  344 (493)
Q Consensus       265 ~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~  344 (493)
                      ||+||++|||+|.|++.|++++|+++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||++++.++++
T Consensus       236 ~p~iV~~dADl~~aa~~i~~~~f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~  315 (455)
T cd07148         236 APVIVDRSADLDAMIPPLVKGGFYHAGQVCVSVQRVFVPAEIADDFAQRLAAAAEKLVVGDPTDPDTEVGPLIRPREVDR  315 (455)
T ss_pred             CceEECCCCCHHHHHHHHHHHHHhcCCCCccCCeEEEEcHhHHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEe
Q 011130          345 ILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVF  424 (493)
Q Consensus       345 ~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~  424 (493)
                      +.++|++++++|+++++||...  .|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||+++||
T Consensus       316 ~~~~i~~a~~~Ga~vl~gg~~~--~~~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~deai~~~n~~~~gL~a~i~  393 (455)
T cd07148         316 VEEWVNEAVAAGARLLCGGKRL--SDTTYAPTVLLDPPRDAKVSTQEIFGPVVCVYSYDDLDEAIAQANSLPVAFQAAVF  393 (455)
T ss_pred             HHHHHHHHHhCCCEEEeCCccC--CCCeEcCEEEeCCCCCCHHHhCCCcCCeEEEEecCCHHHHHHHHhCCCCCceEEEE
Confidence            9999999999999999999754  47899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhcceeEEEECCcCCCC-CCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          425 THNLDTANTLMRALRVGSVWINCFDVFD-AAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       425 t~d~~~~~~~~~~l~~g~V~VN~~~~~~-~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      |+|.+.+.++++++++|+||||+++.+. +.+||||+|+||+|+++|.+++++|++.|+++
T Consensus       394 t~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~PfgG~k~SG~G~~~g~~~~~~~~~~k~~~  454 (455)
T cd07148         394 TKDLDVALKAVRRLDATAVMVNDHTAFRVDWMPFAGRRQSGYGTGGIPYTMHDMTQEKMAV  454 (455)
T ss_pred             cCCHHHHHHHHHHcCcCeEEECCCCCCCCCCCCCCcchhcccCCCchHHHHHHhhceeEEe
Confidence            9999999999999999999999876544 46899999999999999999999999999985


No 73 
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=100.00  E-value=6.3e-79  Score=639.76  Aligned_cols=392  Identities=37%  Similarity=0.605  Sum_probs=371.2

Q ss_pred             eeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhh
Q 011130           84 PTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSA  163 (493)
Q Consensus        84 ~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~  163 (493)
                      +++||+||+++++++.++.+|+++++++|++||+  .|+++|..+|.++|.+++++|+++.++|++++++|+|||..+++
T Consensus         2 ~~~~P~t~~~~~~~~~~~~~~v~~av~~a~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~   79 (453)
T cd07094           2 DVHNPYDGEVIGKVPADDRADAEEALATARAGAE--NRRALPPHERMAILERAADLLKKRAEEFAKIIACEGGKPIKDAR   79 (453)
T ss_pred             CccCCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH
Confidence            5789999999999999999999999999999999  99999999999999999999999999999999999999999998


Q ss_pred             hccHHHHHHHHHHHHHhhHHhcCccCCCC-----CCceeEEEeeeeeeE-------------------------------
Q 011130          164 QTEVPMTTRLFRYYAGWADKIQGLTAPAD-----GPYHVQTLHEPIGVA-------------------------------  207 (493)
Q Consensus       164 ~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~PlGVv-------------------------------  207 (493)
                      . |+..+++.+++++..++++.+...+..     .+...+..++|+|||                               
T Consensus        80 ~-ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~VI~Kp  158 (453)
T cd07094          80 V-EVDRAIDTLRLAAEEAERIRGEEIPLDATQGSDNRLAWTIREPVGVVLAITPFNFPLNLVAHKLAPAIATGCPVVLKP  158 (453)
T ss_pred             H-HHHHHHHHHHHHHHHHHHhcCccccccccccCCCceEEEEEeccceEEEECCCccHHHHHHHHHHHHHHcCCEEEEEC
Confidence            5 999999999999998888766544433     245667889999998                               


Q ss_pred             ----------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCC
Q 011130          208 ----------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKS  265 (493)
Q Consensus       208 ----------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~  265 (493)
                                            |++++|++.+.++++.|+.||++|.|+||||+++|+.|++.+   +++|+++|+||||
T Consensus       159 s~~~p~~~~~l~~~l~~ag~P~g~~~~v~g~~~~~~~~l~~~~~v~~V~fTGs~~~g~~v~~~a---~~~~~~lelGGk~  235 (453)
T cd07094         159 ASKTPLSALELAKILVEAGVPEGVLQVVTGEREVLGDAFAADERVAMLSFTGSAAVGEALRANA---GGKRIALELGGNA  235 (453)
T ss_pred             CCcchHHHHHHHHHHHHcCCCcCcEEEEeCCCchHHHHHhcCCCCCEEEEECcHHHHHHHHHHc---CCCceEEecCCCC
Confidence                                  899999997778899999999999999999999999999977   4689999999999


Q ss_pred             ceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHH
Q 011130          266 PFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKI  345 (493)
Q Consensus       266 p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~  345 (493)
                      |+||++|||++.|++.+++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++++.+||++++.+++++
T Consensus       236 ~~iV~~dadl~~aa~~i~~~~~~~~GQ~C~a~~~i~V~~~i~d~f~~~L~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~  315 (453)
T cd07094         236 PVIVDRDADLDAAIEALAKGGFYHAGQVCISVQRIYVHEELYDEFIEAFVAAVKKLKVGDPLDEDTDVGPLISEEAAERV  315 (453)
T ss_pred             ceEECCCCCHHHHHHHHHHHHHHhcCCCCcCCeEEEEeHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEec
Q 011130          346 LKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFT  425 (493)
Q Consensus       346 ~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t  425 (493)
                      .++|++++++|+++++||..   .|+|++|||+.+++++|+++++|+||||++|++|+|++|||+++|+++|||+++|||
T Consensus       316 ~~~i~~a~~~Ga~v~~gg~~---~g~~~~Ptvl~~~~~~~~i~~~E~FgPvl~v~~~~~~~eai~~~n~~~~gL~~~i~t  392 (453)
T cd07094         316 ERWVEEAVEAGARLLCGGER---DGALFKPTVLEDVPRDTKLSTEETFGPVVPIIRYDDFEEAIRIANSTDYGLQAGIFT  392 (453)
T ss_pred             HHHHHHHHHCCCEEEeCccC---CCeEEeCEEEeCCCCCChhhhCCCcCceEEEEEeCCHHHHHHHHhCCCCCCeeEEEC
Confidence            99999999999999999864   588999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcceeEEEECCcCCC-CCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          426 HNLDTANTLMRALRVGSVWINCFDVF-DAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       426 ~d~~~~~~~~~~l~~g~V~VN~~~~~-~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +|.+++.++++++++|+||||++... .+.+||||+|+||+|+++|.+++++|++.|+|+
T Consensus       393 ~d~~~a~~~~~~l~~g~v~iN~~~~~~~~~~pfgG~~~SG~G~~~g~~~~~~~~~~k~i~  452 (453)
T cd07094         393 RDLNVAFKAAEKLEVGGVMVNDSSAFRTDWMPFGGVKESGVGREGVPYAMEEMTEEKTVV  452 (453)
T ss_pred             CCHHHHHHHHHhcCcCeEEEcCCCCCCCCCCCCCCccccccCcCChHHHHHHHhceeEEe
Confidence            99999999999999999999997654 478999999999999999999999999999985


No 74 
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate.  SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=100.00  E-value=7.8e-79  Score=638.55  Aligned_cols=394  Identities=35%  Similarity=0.524  Sum_probs=367.2

Q ss_pred             ecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhc
Q 011130           86 LDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQT  165 (493)
Q Consensus        86 ~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~  165 (493)
                      .||+||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||..++.. 
T Consensus         1 ~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~-   77 (454)
T cd07101           1 EAPFTGEPLGELPQSTPADVEAAFARARAAQR--AWAARPFAERAAVFLRFHDLVLERRDELLDLIQLETGKARRHAFE-   77 (454)
T ss_pred             CcCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHH-
Confidence            38999999999999999999999999999999  999999999999999999999999999999999999999999874 


Q ss_pred             cHHHHHHHHHHHHHhhHHhcCccC-CC--CCCceeEEEeeeeeeE-----------------------------------
Q 011130          166 EVPMTTRLFRYYAGWADKIQGLTA-PA--DGPYHVQTLHEPIGVA-----------------------------------  207 (493)
Q Consensus       166 Ev~~~~~~l~~~a~~~~~~~~~~~-~~--~~~~~~~~~~~PlGVv-----------------------------------  207 (493)
                      |+..++..++|++..+++...... +.  ......+..++|+|||                                   
T Consensus        78 ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~ALaaGN~vvlKps~~~  157 (454)
T cd07101          78 EVLDVAIVARYYARRAERLLKPRRRRGAIPVLTRTTVNRRPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVLKPDSQT  157 (454)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccccCCCCceEEEEEEeccEEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCccc
Confidence            999999999999988876654322 11  1234668899999999                                   


Q ss_pred             ------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEE
Q 011130          208 ------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIV  269 (493)
Q Consensus       208 ------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV  269 (493)
                                        |++|+|++.+.+.++.|+.|  ++.|+||||+.+|+.|++.+++ +++|+++|||||||+||
T Consensus       158 p~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~l~~~--~~~V~fTGs~~~g~~i~~~aa~-~~~~~~lElgG~~p~iV  234 (454)
T cd07101         158 ALTALWAVELLIEAGLPRDLWQVVTGPGSEVGGAIVDN--ADYVMFTGSTATGRVVAERAGR-RLIGCSLELGGKNPMIV  234 (454)
T ss_pred             hHHHHHHHHHHHHcCcCCCcEEEEeCCcHHHHHHHHhC--CCEEEEECCHHHHHHHHHHHHh-cCCcEEEECCCCceEEE
Confidence                              89999999888888999987  5789999999999999999988 89999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHH
Q 011130          270 CEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYI  349 (493)
Q Consensus       270 ~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i  349 (493)
                      ++|||++.|++.+++++|.|+||.|+++++||||++++|+|+++|+++++++++|+|.++++++||++++.+++++.++|
T Consensus       235 ~~dAdl~~a~~~i~~~~~~~sGQ~C~a~~rv~V~~~i~d~f~~~L~~~~~~~~~G~~~~~~~~~gpli~~~~~~~v~~~v  314 (454)
T cd07101         235 LEDADLDKAAAGAVRACFSNAGQLCVSIERIYVHESVYDEFVRRFVARTRALRLGAALDYGPDMGSLISQAQLDRVTAHV  314 (454)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCcccCeEEEEcHHHHHHHHHHHHHHHhhCCCCCCCCCCCCcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEeCCcccC-CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCH
Q 011130          350 RSGVDGGAKLETGGERLG-AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNL  428 (493)
Q Consensus       350 ~~a~~~ga~v~~gg~~~~-~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~  428 (493)
                      ++++++|+++++||.... ..|+|++|||+.+++++|.+++||+||||++|++|+|+||||+++|+++|||+++|||+|.
T Consensus       315 ~~a~~~Ga~vl~gg~~~~~~~~~~~~Ptvl~~v~~~~~~~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gL~~~i~t~d~  394 (454)
T cd07101         315 DDAVAKGATVLAGGRARPDLGPYFYEPTVLTGVTEDMELFAEETFGPVVSIYRVADDDEAIELANDTDYGLNASVWTRDG  394 (454)
T ss_pred             HHHHHCCCEEEeCCCCCCCCCCeEEcCEEEeCCCCCCHHHhCCCCCceEEEEeeCCHHHHHHHHhCCCCCceEEEEcCCH
Confidence            999999999999986432 3579999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcceeEEEECCcCC---CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          429 DTANTLMRALRVGSVWINCFDV---FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       429 ~~~~~~~~~l~~g~V~VN~~~~---~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      +.++++++++++|+||||++..   .++.+||||+|.||+|+++|.+++++|++.|++++
T Consensus       395 ~~a~~~~~~l~~G~v~iN~~~~~~~~~~~~PfgG~k~SG~G~~~g~~~~~~~~~~k~v~~  454 (454)
T cd07101         395 ARGRRIAARLRAGTVNVNEGYAAAWASIDAPMGGMKDSGLGRRHGAEGLLKYTETQTVAV  454 (454)
T ss_pred             HHHHHHHHhcCcceEEECCCCCcCcCCCCCCCCcccccccCccchHHHHHHhcceEEEeC
Confidence            9999999999999999998643   45678999999999999999999999999999863


No 75 
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=100.00  E-value=1.1e-78  Score=638.30  Aligned_cols=396  Identities=44%  Similarity=0.709  Sum_probs=372.2

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh-hhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPF-EQSA  163 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~-~~a~  163 (493)
                      ++||.||+++++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||. .+++
T Consensus         1 ~~~P~t~~~~~~~~~~~~~~v~~av~~a~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~a~   78 (457)
T cd07108           1 VINPATGQVIGEVPRSRAADVDRAVAAAKAAFP--EWAATPARERGKLLARIADALEARSEELARLLALETGNALRTQAR   78 (457)
T ss_pred             CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHH
Confidence            479999999999999999999999999999999  9999999999999999999999999999999999999997 6777


Q ss_pred             hccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE------------------------------------
Q 011130          164 QTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA------------------------------------  207 (493)
Q Consensus       164 ~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv------------------------------------  207 (493)
                       .|+..+++.+++++.+...+.+...+...+...+..++|+|||                                    
T Consensus        79 -~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VVlKps~~~p  157 (457)
T cd07108          79 -PEAAVLADLFRYFGGLAGELKGETLPFGPDVLTYTVREPLGVVGAILPWNAPLMLAALKIAPALVAGNTVVLKAAEDAP  157 (457)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhCCceeccCCCeeEEEEeecceEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCCc
Confidence             4999999999999988877766555443445567889999999                                    


Q ss_pred             ----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEcc
Q 011130          208 ----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCE  271 (493)
Q Consensus       208 ----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~  271 (493)
                                      |++|+|++.+.++++.|+.||++|+|+||||+.+|+.|++.+++ +++|+++|+|||||+||++
T Consensus       158 ~~~~~l~~~~~~~lP~~~~~~v~g~~~~~~~~L~~~~~vd~v~ftGs~~~g~~v~~~aa~-~l~~~~lelgG~~~~iV~~  236 (457)
T cd07108         158 LAVLLLAEILAQVLPAGVLNVITGYGEECGAALVDHPDVDKVTFTGSTEVGKIIYRAAAD-RLIPVSLELGGKSPMIVFP  236 (457)
T ss_pred             HHHHHHHHHHHHhCCcCcEEEEeCCchHHHHHHhcCCCcCEEEEECcHHHHHHHHHHHhc-cCCeEEEECCCCCeeEECC
Confidence                            99999998777788999999999999999999999999999988 8999999999999999999


Q ss_pred             CCCHHHHHHHHHHH-HHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHH
Q 011130          272 DADVDKAAELAHYA-LFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIR  350 (493)
Q Consensus       272 daDl~~aa~~i~~~-~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~  350 (493)
                      |||++.|++.++++ .|.|+||.|+++++||||++++|+|+++|++++.++++|+|.++++++||++++.+++++.++|+
T Consensus       237 dAdl~~Aa~~iv~~~~f~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~  316 (457)
T cd07108         237 DADLDDAVDGAIAGMRFTRQGQSCTAGSRLFVHEDIYDAFLEKLVAKLSKLKIGDPLDEATDIGAIISEKQFAKVCGYID  316 (457)
T ss_pred             CCCHHHHHHHHHHhhHhhcCCCCCCCCeEEEEehHHHHHHHHHHHHHHhhCCCCCCCCCCCCcCCCCCHHHHHHHHHHHH
Confidence            99999999999999 59999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-CCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEec
Q 011130          351 SGVD-GGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFT  425 (493)
Q Consensus       351 ~a~~-~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t  425 (493)
                      ++++ +|+++++||....    ..|+|++|||+.+++++|.+++||+||||++|++|+|+||||+++|+++|||+++|||
T Consensus       317 ~a~~~~ga~vl~gG~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gLs~~vft  396 (457)
T cd07108         317 LGLSTSGATVLRGGPLPGEGPLADGFFVQPTIFSGVDNEWRLAREEIFGPVLCAIPWKDEDEVIAMANDSHYGLAAYVWT  396 (457)
T ss_pred             HHHhCCCCEEEeCCCcCccCCCCCceEECCEEEecCCCCChhhhcCCCCceEEeecCCCHHHHHHHHhCCCcCceeEEEc
Confidence            9998 9999999997542    3689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHH-HHhhhhceEEE
Q 011130          426 HNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYS-LSNYLQVKAVV  484 (493)
Q Consensus       426 ~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~-l~~~~~~k~v~  484 (493)
                      +|.+.++++++++++|.|+||++....+.+||||+|+||+|+++|.++ +++||+.|+++
T Consensus       397 ~d~~~a~~~~~~l~~g~v~iN~~~~~~~~~pfGG~k~SG~G~~~g~~~~~~~f~~~k~i~  456 (457)
T cd07108         397 RDLGRALRAAHALEAGWVQVNQGGGQQPGQSYGGFKQSGLGREASLEGMLEHFTQKKTVN  456 (457)
T ss_pred             CCHHHHHHHHHhcCcceEEECCCCCCCCCCCcCCcccCcCCCCccchhHHHHhhceEEEe
Confidence            999999999999999999999987667889999999999999999866 79999999885


No 76 
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=100.00  E-value=1.6e-78  Score=655.82  Aligned_cols=409  Identities=24%  Similarity=0.317  Sum_probs=367.4

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHH-ccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKA-FDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A-~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      ++||||+|+.+. +++++++||+||+++++++.++ .|+++||++|++| |+  .|+++|..+|.++|++++++|+++.+
T Consensus         2 ~~~i~g~~~~~~-~~~~~v~nP~tg~~i~~~~~~~-~dv~~Av~~A~~aa~~--~W~~~~~~eR~~~L~~~a~~l~~~~~   77 (663)
T TIGR02278         2 QSYLSGEWRTGQ-GEGVPVRDASTGEVLARVTSEG-LDVAAAVAWAREVGGP--ALRALTFHERARMLKALAQYLSERKE   77 (663)
T ss_pred             ceeECCEEEcCC-CCeEeccCCCCCCEEEEEcCCc-HHHHHHHHHHHHhcch--hhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            579999999753 5789999999999999999999 5999999999996 88  99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhc--------CccCCCCC--CceeEEEeeee-eeE-------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQ--------GLTAPADG--PYHVQTLHEPI-GVA-------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~--------~~~~~~~~--~~~~~~~~~Pl-GVv-------  207 (493)
                      +|++ +++|+|||+.+++. |+..+++.++||+.++++..        +...+...  ....++.++|+ |||       
T Consensus        78 ela~-~~~e~GK~~~~a~~-ev~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~P~~Gvv~~I~pwN  155 (663)
T TIGR02278        78 ALYA-LAATTGATRRDNWV-DIDGGIGTLFTYSSLGRRELPDANLIPEDEFEPLSKDGSFQGRHILTPKGGVAVQINAFN  155 (663)
T ss_pred             HHHH-HHHHcCCCHHHHHH-HHHHHHHHHHHHHHhhhhhccccccccCCceeccCCCCccceEEEEEeCCceEEEEcCCc
Confidence            9999 59999999999885 99999999999999887632        33333221  23467899997 999       


Q ss_pred             -----------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcH
Q 011130          208 -----------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTT  240 (493)
Q Consensus       208 -----------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~  240 (493)
                                                                     |++|+|++..   +..+..++.+++|+||||++
T Consensus       156 ~P~~~~~~~~~~ALaaGN~Vv~KPs~~tp~~~~~l~~~~~~aG~lP~gv~~~v~g~~---~~~~~~~~~~~~V~FTGS~~  232 (663)
T TIGR02278       156 FPVWGLLEKFAPAFLAGVPTLAKPATPTAYVAEALVRTMVESGLLPEGSLQLICGSA---GDLLDHLDHRDVVAFTGSAA  232 (663)
T ss_pred             hHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCCCCcEEEEeCCh---HHHHhcCCCCCEEEEECCHH
Confidence                                                           6899999842   33333347789999999999


Q ss_pred             HHHHHHHHH--hhcCCCceeEecCCCCceEEccCCC-----HHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHH
Q 011130          241 TGKIVLQLA--AKSNLKPVTLELGGKSPFIVCEDAD-----VDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEK  313 (493)
Q Consensus       241 ~g~~v~~~a--~~~~~~pv~lelgG~~p~iV~~daD-----l~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~  313 (493)
                      +|+.|++.+  ++ +++|+++|||||||+||++|||     +|.|++.+++++|.|+||.|++++|||||++++|+|+++
T Consensus       233 ~G~~i~~~aaaa~-~~~~~~lELGGk~p~IV~~dAd~~~~dl~~aa~~i~~~~f~~sGQ~C~a~~rv~V~~~i~d~f~~~  311 (663)
T TIGR02278       233 TADRLRAHPNVLE-RGIRFNAEADSLNAAILGEDATPDEPEFDLFAQEIVRELTIKAGQKCTAIRRVIVPKALLEAVLKA  311 (663)
T ss_pred             HHHHHHHhHhHHh-cCceEEEEcCCCCeEEEcCCCCccchhHHHHHHHHHHHHHhcCCCCccCCceEEEeHHHHHHHHHH
Confidence            999999874  35 8899999999999999999999     999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCc-ccccccc
Q 011130          314 ANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDM-LIAKDEI  392 (493)
Q Consensus       314 l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~-~i~~~E~  392 (493)
                      |++++.++++|+|.++++++||++++.+++++.++|++++++|+++++||... ..|+|++|||+.++.++| .+++||+
T Consensus       312 l~~~~~~l~vG~p~~~~t~~Gpli~~~~~~~i~~~i~~a~~~Ga~vl~GG~~~-~~g~~~~PTvl~~~~~~~~~i~~eE~  390 (663)
T TIGR02278       312 LQARLAKVVLGDPREEGVDMGPLVSLEQRADVEAAVAALLAAGAEVRLGGPGR-LDGAFFPPTLLLAEDPWAGAVHATEA  390 (663)
T ss_pred             HHHHHHhccCCCccccCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCcC-CCCeeEccEEEeeCCcchhhHHhccc
Confidence            99999999999999999999999999999999999999999999999999753 358999999999988876 7999999


Q ss_pred             ccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc--ceeEEEE-CCc-------CC-CCCCCCccCCC
Q 011130          393 FGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL--RVGSVWI-NCF-------DV-FDAAIPFGGYK  461 (493)
Q Consensus       393 fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l--~~g~V~V-N~~-------~~-~~~~~pfGG~~  461 (493)
                      ||||++|++|+|.+|||+++|+++|||+++|||+|.+.+++++++|  ++|+||| |..       .. ..+.+||||+|
T Consensus       391 FGPVl~V~~~~~~~eai~~aN~~~~gL~a~vft~d~~~~~~~~~~l~~~~G~v~InN~~~~~~~~~~~~~~~~~pfGG~k  470 (663)
T TIGR02278       391 FGPVATFFPYGDRAEAARLAARGGGSLVATLATSDPEEARQFILGLAPYHGRLHILNRDDAAESTGHGSPLPRLLHGGPG  470 (663)
T ss_pred             cCCeEEEEeeCCHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHHHHhhCCEEEECCCcccccccCCCCCCCCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999  8999999 642       11 23678999999


Q ss_pred             CCCCCCc-chHHHHHhhhhceEEEEe
Q 011130          462 QSGQGRE-KGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       462 ~SG~G~~-~g~~~l~~~~~~k~v~~~  486 (493)
                      +||+|++ +|.+++++|++.|+|..-
T Consensus       471 ~SG~G~~~g~~~~l~~f~~~k~v~~~  496 (663)
T TIGR02278       471 RAGGGEELGGLRSVKHYMQRTAIQGS  496 (663)
T ss_pred             cCcCCCccchHHHHHHhceeEEEEcC
Confidence            9999999 568999999999998654


No 77 
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=100.00  E-value=1.6e-78  Score=636.46  Aligned_cols=396  Identities=41%  Similarity=0.661  Sum_probs=372.7

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||+||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|.++.++|++++++|+|||..++..
T Consensus         1 ~~~P~t~~~i~~~~~~~~~~v~~av~~a~~a~~--~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~~~~   78 (450)
T cd07092           1 VVDPATGEEIATVPDASAADVDAAVAAAHAAFP--SWRRTTPAERSKALLKLADAIEENAEELAALESRNTGKPLHLVRD   78 (450)
T ss_pred             CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHH
Confidence            479999999999999999999999999999999  999999999999999999999999999999999999999977655


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcCccCCC-CCCceeEEEeeeeeeE------------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQGLTAPA-DGPYHVQTLHEPIGVA------------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~~~~~~-~~~~~~~~~~~PlGVv------------------------------------  207 (493)
                      .|+..+++.+++++...+.+.+...+. ..+...++.++|+|||                                    
T Consensus        79 ~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~VIlKps~~~~  158 (450)
T cd07092          79 DELPGAVDNFRFFAGAARTLEGPAAGEYLPGHTSMIRREPIGVVAQIAPWNYPLMMAAWKIAPALAAGNTVVLKPSETTP  158 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccCccCCCceeEEEEeccceEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCccch
Confidence            699999999999998877765543221 1233567899999999                                    


Q ss_pred             ----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEcc
Q 011130          208 ----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCE  271 (493)
Q Consensus       208 ----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~  271 (493)
                                      |++|+|++.+.+.++.|+.|++++.|+||||+.+|+.|++.+++ +++|+++|+|||||+||++
T Consensus       159 ~~~~~l~~~~~~glP~g~~~~v~g~~~~~~~~l~~~~~v~~V~fTGs~~~g~~v~~~a~~-~~~~~~lelgG~~p~iV~~  237 (450)
T cd07092         159 LTTLLLAELAAEVLPPGVVNVVCGGGASAGDALVAHPRVRMVSLTGSVRTGKKVARAAAD-TLKRVHLELGGKAPVIVFD  237 (450)
T ss_pred             HHHHHHHHHHHhcCCcccEEEeecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhh-cCCcEEEECCCCCeeEECC
Confidence                            99999998777788999999999999999999999999999998 8999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHH
Q 011130          272 DADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRS  351 (493)
Q Consensus       272 daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~  351 (493)
                      |||+|.|++.|++++|+|+||.|+++++||||++++|+|+++|+++++++++|+|.++++++||++++.+++++.++|++
T Consensus       238 dAdl~~aa~~iv~~~~~~~GQ~C~a~~~v~V~~~i~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~i~~~i~~  317 (450)
T cd07092         238 DADLDAAVAGIATAGYYNAGQDCTAACRVYVHESVYDEFVAALVEAVSAIRVGDPDDEDTEMGPLNSAAQRERVAGFVER  317 (450)
T ss_pred             CCCHHHHHHHHHHHHHhhCCCCCCCCcEEEEeHHHHHHHHHHHHHHHhhCCcCCCCCCCCccCcccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHH
Q 011130          352 GVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTA  431 (493)
Q Consensus       352 a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~  431 (493)
                      +. +|+++++||......|+|++|||+.+++++|+++++|+||||++|++|+|+||||+++|+++|||+++|||+|.+.+
T Consensus       318 a~-~ga~~~~gg~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~deai~~~n~~~~gL~~~vft~d~~~~  396 (450)
T cd07092         318 AP-AHARVLTGGRRAEGPGYFYEPTVVAGVAQDDEIVQEEIFGPVVTVQPFDDEDEAIELANDVEYGLASSVWTRDVGRA  396 (450)
T ss_pred             HH-cCCEEEeCCCCCCCCccEEeeEEEEcCCCCChHHhCCCcCceEEEEEECCHHHHHHHHhCCCCCceEEEECCCHHHH
Confidence            98 99999999986555789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          432 NTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       432 ~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +++++++++|+|+||++....+.+||||+|+||+|+++|.+++++|++.|+++
T Consensus       397 ~~~~~~l~~g~v~iN~~~~~~~~~PfgG~~~SG~G~~~g~~~~~~~~~~k~~~  449 (450)
T cd07092         397 MRLSARLDFGTVWVNTHIPLAAEMPHGGFKQSGYGKDLSIYALEDYTRIKHVM  449 (450)
T ss_pred             HHHHHhcCccEEEECCCCCCCCCCCcCCcccCcCCCCChHHHHHHHheeeEEe
Confidence            99999999999999998777788999999999999999999999999999985


No 78 
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=100.00  E-value=3.2e-78  Score=634.56  Aligned_cols=394  Identities=34%  Similarity=0.523  Sum_probs=371.7

Q ss_pred             ecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhc
Q 011130           86 LDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQT  165 (493)
Q Consensus        86 ~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~  165 (493)
                      +||+||+++++++.++.+|++++|++|++||+  .|+++|..+|.++|++++++|+++.++|++++++|+|||..++.. 
T Consensus         1 ~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~-   77 (452)
T cd07102           1 ISPIDGSVIAERPLASLEAVRAALERARAAQK--GWRAVPLEERKAIVTRAVELLAANTDEIAEELTWQMGRPIAQAGG-   77 (452)
T ss_pred             CCCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCCCHHHHHH-
Confidence            58999999999999999999999999999999  999999999999999999999999999999999999999999874 


Q ss_pred             cHHHHHHHHHHHHHhhHHhcCcc-CCCCCCceeEEEeeeeeeE-------------------------------------
Q 011130          166 EVPMTTRLFRYYAGWADKIQGLT-APADGPYHVQTLHEPIGVA-------------------------------------  207 (493)
Q Consensus       166 Ev~~~~~~l~~~a~~~~~~~~~~-~~~~~~~~~~~~~~PlGVv-------------------------------------  207 (493)
                      |+..+++.+++++..+++..+.. .+...+...++.++|+|||                                     
T Consensus        78 ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~N~P~~~~~~~l~~ALaaGN~VVlKps~~~~~  157 (452)
T cd07102          78 EIRGMLERARYMISIAEEALADIRVPEKDGFERYIRREPLGVVLIIAPWNYPYLTAVNAVIPALLAGNAVILKHSPQTPL  157 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccCCCCCeeEEEEEEeccEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCCCcH
Confidence            99999999999998887664442 2333445567899999999                                     


Q ss_pred             ----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEcc
Q 011130          208 ----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCE  271 (493)
Q Consensus       208 ----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~  271 (493)
                                      |++|+|++++ +.+..|+.||+|+.|.||||+++|+.|++.+++ +++|+.+|+|||||+||++
T Consensus       158 ~~~~l~~~l~~aGlP~g~~~~v~g~~-~~~~~L~~~~~v~~V~fTGs~~~g~~v~~~a~~-~~~~v~lelgG~~~~iV~~  235 (452)
T cd07102         158 CGERFAAAFAEAGLPEGVFQVLHLSH-ETSAALIADPRIDHVSFTGSVAGGRAIQRAAAG-RFIKVGLELGGKDPAYVRP  235 (452)
T ss_pred             HHHHHHHHHHhcCCCcCcEEEEeCCc-hhHHHHhcCCCCCEEEEECcHHHHHHHHHHHHh-cCCcEEEECCCCCceEEcC
Confidence                            8999999966 788999999999999999999999999999887 8999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHH
Q 011130          272 DADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRS  351 (493)
Q Consensus       272 daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~  351 (493)
                      |||+|.|++.+++++|+++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||+++..+++++.++|++
T Consensus       236 dADl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~v~~~f~~~L~~~~~~l~vg~p~~~~~~~gpli~~~~~~~i~~~i~~  315 (452)
T cd07102         236 DADLDAAAESLVDGAFFNSGQSCCSIERIYVHESIYDAFVEAFVAVVKGYKLGDPLDPSTTLGPVVSARAADFVRAQIAD  315 (452)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCcCCcEEEEeHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEeCCccc---CCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCH
Q 011130          352 GVDGGAKLETGGERL---GAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNL  428 (493)
Q Consensus       352 a~~~ga~v~~gg~~~---~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~  428 (493)
                      ++++|+++++||...   +..|+|++|||+.+++++|+++++|+||||++|++|+|+||||+++|+++|||+++|||+|.
T Consensus       316 a~~~ga~vl~gg~~~~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gL~~~i~t~d~  395 (452)
T cd07102         316 AIAKGARALIDGALFPEDKAGGAYLAPTVLTNVDHSMRVMREETFGPVVGIMKVKSDAEAIALMNDSEYGLTASVWTKDI  395 (452)
T ss_pred             HHhCCCEEEeCCCCCCCCCCCCceEcCEEEecCCCCChhhhcCCcCCeEEEEEeCCHHHHHHHHhCCCCCceEEEEcCCH
Confidence            999999999999753   24689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          429 DTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       429 ~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +.+.++++++++|+||||++...++..||||+|+||+|+++|.+++++|++.|+++
T Consensus       396 ~~~~~~~~~l~~G~v~iN~~~~~~~~~pfgG~k~SG~G~~~g~~~~~~~~~~k~~~  451 (452)
T cd07102         396 ARAEALGEQLETGTVFMNRCDYLDPALAWTGVKDSGRGVTLSRLGYDQLTRPKSYH  451 (452)
T ss_pred             HHHHHHHHHcCcceEEECCCCCCCCCCCCCCccccccCccchHHHHHHHhceeEEe
Confidence            99999999999999999998767778999999999999999999999999999985


No 79 
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=100.00  E-value=2.6e-78  Score=639.02  Aligned_cols=412  Identities=24%  Similarity=0.330  Sum_probs=366.5

Q ss_pred             cccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHc-cCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 011130           65 YTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAF-DEGPWPRMTAYERSKIILRFADLLERH  143 (493)
Q Consensus        65 ~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~-~~~~w~~~~~~~R~~iL~~la~~l~~~  143 (493)
                      ..++||||+|+.+ ++.+++++||+||+++++++. +.+|+++||++|++|+ +  .|+++|..+|.++|++++++|+++
T Consensus         4 ~~~~~i~G~~~~~-~~~~~~~~nP~tge~l~~v~~-~~~dv~~Av~aA~~A~~~--~W~~~~~~eR~~~L~~~a~~l~~~   79 (521)
T PRK11903          4 LLANYVAGRWQAG-SGAGTPLFDPVTGEELVRVSA-TGLDLAAAFAFAREQGGA--ALRALTYAQRAALLAAIVKVLQAN   79 (521)
T ss_pred             hhhhhCCCEEEcC-CCCeeeeECCCCCCEEEEecC-ChHHHHHHHHHHHHhhhh--hhhhCCHHHHHHHHHHHHHHHHHH
Confidence            3468999999964 357899999999999999997 8899999999999995 7  899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC---------CCceeEEEeee-eeeE------
Q 011130          144 NDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD---------GPYHVQTLHEP-IGVA------  207 (493)
Q Consensus       144 ~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~---------~~~~~~~~~~P-lGVv------  207 (493)
                      .++|++++++|+|||+.+++. |+..+++.++||+.+++.+.+......         .....++.++| +|||      
T Consensus        80 ~~ela~~~~~e~Gkp~~~a~~-ev~~~i~~l~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~pw  158 (521)
T PRK11903         80 RDAYYDIATANSGTTRNDSAV-DIDGGIFTLGYYAKLGAALGDARLLRDGEAVQLGKDPAFQGQHVLVPTRGVALFINAF  158 (521)
T ss_pred             HHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcccCCCccccccccccccceEEEecCcceEEEECCc
Confidence            999999999999999999985 999999999999998877654322111         12234667899 5998      


Q ss_pred             ------------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCc
Q 011130          208 ------------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGST  239 (493)
Q Consensus       208 ------------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~  239 (493)
                                                                      |++|+|+|.+.++++.|   +++|+|+||||+
T Consensus       159 N~P~~~~~~~~~~ALaaGN~VV~KPs~~tp~~~~~l~~~~~~ag~lP~gv~~~v~g~~~~~~~~l---~~v~~v~fTGS~  235 (521)
T PRK11903        159 NFPAWGLWEKAAPALLAGVPVIVKPATATAWLTQRMVKDVVAAGILPAGALSVVCGSSAGLLDHL---QPFDVVSFTGSA  235 (521)
T ss_pred             chHHHHHHHHHHHHHHcCCeEEEEcCCcChHHHHHHHHHHHHhCCCCcCceEEeeCCchHHHhcc---cCCCEEEEECCH
Confidence                                                            78999998665555444   789999999999


Q ss_pred             HHHHHHHHHH--hhcCCCceeEecCCCCceEEccCCC-----HHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHH
Q 011130          240 TTGKIVLQLA--AKSNLKPVTLELGGKSPFIVCEDAD-----VDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVE  312 (493)
Q Consensus       240 ~~g~~v~~~a--~~~~~~pv~lelgG~~p~iV~~daD-----l~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~  312 (493)
                      ++|+.|++.+  +. +++|+++|||||||+||++|||     ++.+++.+++++|.|+||.|++++|||||+++||+|++
T Consensus       236 ~~G~~v~~~aa~~~-~~~~~~lElGGknp~IV~~dAd~~~~~~~~aa~~i~~~~f~~sGQ~C~a~~rv~V~~~i~d~f~~  314 (521)
T PRK11903        236 ETAAVLRSHPAVVQ-RSVRVNVEADSLNSALLGPDAAPGSEAFDLFVKEVVREMTVKSGQKCTAIRRIFVPEALYDAVAE  314 (521)
T ss_pred             HHHHHHHhhhhhhc-cCceeEeeccccCceEEccCCcccchhHHHHHHHHHHHHHhccCCCccCCeEEEEehhHHHHHHH
Confidence            9999999864  35 7899999999999999999999     59999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCccc------CCCCceeeceEEecCCC--C
Q 011130          313 KANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERL------GAKGYYIKPTVFTGVKD--D  384 (493)
Q Consensus       313 ~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~------~~~g~~~~Ptvl~~~~~--~  384 (493)
                      +|+++++++++|+|.++++++||++++.+++++.++|+.. .+|+++++||...      ...|+|++|||+.++.+  +
T Consensus       315 ~L~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~~-~~ga~vl~gg~~~~~~~~~~~~g~~~~PTvl~~~~~~~~  393 (521)
T PRK11903        315 ALAARLAKTTVGNPRNDGVRMGPLVSRAQLAAVRAGLAAL-RAQAEVLFDGGGFALVDADPAVAACVGPTLLGASDPDAA  393 (521)
T ss_pred             HHHHHHHhccCCCCCCCcCccCCCCCHHHHHHHHHHHHHH-hcCCEEEECCccCCCCCCCCCCCeEEcCEEEeccCCCcc
Confidence            9999999999999999999999999999999999999964 5799999999652      13589999999987654  4


Q ss_pred             ccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc--ceeEEEECCcCC---------CCC
Q 011130          385 MLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL--RVGSVWINCFDV---------FDA  453 (493)
Q Consensus       385 ~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l--~~g~V~VN~~~~---------~~~  453 (493)
                      +.++++|+||||++|++|+|++|+|+++|+++|||+++|||+|.+.+.++++++  ++|+||||+.+.         ..+
T Consensus       394 ~~i~~eE~FGPvl~V~~~~~~~eai~~~N~~~~gL~asvft~d~~~~~~~~~~l~~~~G~V~iN~~~~~~~~~~~~~~~~  473 (521)
T PRK11903        394 TAVHDVEVFGPVATLLPYRDAAHALALARRGQGSLVASVYSDDAAFLAAAALELADSHGRVHVISPDVAALHTGHGNVMP  473 (521)
T ss_pred             chHHhCcccCCeEEEEeeCCHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHhCCEEEEcCcccccccccCCCCCC
Confidence            789999999999999999999999999999999999999999999999999999  999999997532         346


Q ss_pred             CCCccCCCCCCCCCcc-hHHHHHhhhhceEEEEe
Q 011130          454 AIPFGGYKQSGQGREK-GSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       454 ~~pfGG~~~SG~G~~~-g~~~l~~~~~~k~v~~~  486 (493)
                      .+||||+|+||+|+++ |.+++++|++.|++..+
T Consensus       474 ~~PfGG~k~SG~Gr~~g~~~~l~~~t~~~~~~~~  507 (521)
T PRK11903        474 QSLHGGPGRAGGGEELGGLRALAFYHRRSAVQAS  507 (521)
T ss_pred             CCCCCCCCcCcCCcccccHHHHHHHhccceeeCC
Confidence            7899999999999985 58999999998877543


No 80 
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=100.00  E-value=2.3e-78  Score=637.76  Aligned_cols=398  Identities=30%  Similarity=0.440  Sum_probs=368.6

Q ss_pred             cccceeCCEeeeCCCCCeeeeecCCCC-CeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 011130           65 YTQLLINGQFVDSASGKTFPTLDPRTG-DVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERH  143 (493)
Q Consensus        65 ~~~~~I~G~~~~~~~~~~~~v~~P~tg-~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~  143 (493)
                      ..|+||||+|+.  ++.+++++||.|+ ++|++++.++.+|+++|+++|++||+  .|+++|..+|.++|++++++|+++
T Consensus        37 ~~~~~i~g~~~~--~~~~~~~~nP~t~~e~i~~~~~~~~~dv~~av~~A~~a~~--~W~~~~~~~R~~~L~~~a~~l~~~  112 (500)
T TIGR01238        37 QAAPIIGHSYKA--DGEAQPVTNPADRRDIVGQVFHANLAHVQAAIDSAQQAFP--TWNATPAKERAAKLDRLADLLELH  112 (500)
T ss_pred             ecCceECCEEec--CCCeEEeeCCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhH
Confidence            468999999986  5788999999995 89999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE----------------
Q 011130          144 NDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA----------------  207 (493)
Q Consensus       144 ~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv----------------  207 (493)
                      .++|++++++|+|||..++.. |+..+++.++++++..++..+.           ..++|+|||                
T Consensus       113 ~~ela~~~~~e~Gk~~~~a~~-ev~~~i~~l~~~a~~~~~~~~~-----------~~~~P~GVV~~I~pwN~P~~~~~~~  180 (500)
T TIGR01238       113 MPELMALCVREAGKTIHNAIA-EVREAVDFCRYYAKQVRDVLGE-----------FSVESRGVFVCISPWNFPLAIFTGQ  180 (500)
T ss_pred             HHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCc-----------eeccCcceEEEECCCchHHHHHHHH
Confidence            999999999999999999975 9999999999999887654321           358899998                


Q ss_pred             -------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHh
Q 011130          208 -------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAA  250 (493)
Q Consensus       208 -------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~  250 (493)
                                                           |++|+|++.+.++++.|+.||++|+|+||||+.+|+.|++.++
T Consensus       181 i~~ALaaGN~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~l~~~~~v~~V~ftGs~~~g~~v~~~aa  260 (500)
T TIGR01238       181 ISAALAAGNTVIAKPAEQTSLIAYRAVELMQEAGFPAGTIQLLPGRGADVGAALTSDPRIAGVAFTGSTEVAQLINQTLA  260 (500)
T ss_pred             HHHHHHcCCEEEEeCCCCccHHHHHHHHHHHHcCCCCCceEEEecCcchHHHHHhcCCCcCeEEEECCHHHHHHHHHHHh
Confidence                                                 9999999877678999999999999999999999999999998


Q ss_pred             hcCC---CceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCC
Q 011130          251 KSNL---KPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPF  327 (493)
Q Consensus       251 ~~~~---~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~  327 (493)
                      + ++   +|+++|+|||||+||++|||+|.|++.+++++|.|+||.|+++++||||++++|+|+++|++++.++++|+|.
T Consensus       261 ~-~~~~~~~v~lElGGknp~IV~~dAdld~Aa~~i~~~~f~nsGQ~C~a~~rv~V~~~i~d~f~~~L~~~~~~~~vG~p~  339 (500)
T TIGR01238       261 Q-REDAPVPLIAETGGQNAMIVDSTALPEQVVRDVLRSAFDSAGQRCSALRVLCVQEDVADRVLTMIQGAMQELKVGVPH  339 (500)
T ss_pred             h-cccCCceEEEecCCcCcEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCceeEEcHhhHHHHHHHHHHHHHhCCCCCCC
Confidence            7 54   7999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCc---ccCCCCceeeceEEecCCCCccccccccccceEEEEEeC-
Q 011130          328 KGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGE---RLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK-  403 (493)
Q Consensus       328 ~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~---~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~-  403 (493)
                      ++++++||++++.+++++.++|+++++.|++++.++.   .....|+|++|||+.+  ++|.++++|+||||++|++|+ 
T Consensus       340 ~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~l~~~~~~~~~~~~~g~f~~PTvl~~--~~~~~~~eE~FgPvl~v~~~~~  417 (500)
T TIGR01238       340 LLTTDVGPVIDAEAKQNLLAHIEHMSQTQKKIAQLTLDDSRACQHGTFVAPTLFEL--DDIAELSEEVFGPVLHVVRYKA  417 (500)
T ss_pred             CCCCCcCCCCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCeeEcCEEEcc--CCchHhhCCCcCCEEEEEEeCC
Confidence            9999999999999999999999999999999875432   1223689999999984  688899999999999999998 


Q ss_pred             -CHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC--CCCCCccCCCCCCCC-CcchHHHHHhhhh
Q 011130          404 -DLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF--DAAIPFGGYKQSGQG-REKGSYSLSNYLQ  479 (493)
Q Consensus       404 -~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~--~~~~pfGG~~~SG~G-~~~g~~~l~~~~~  479 (493)
                       ++||||+++|+++|||+++|||+|.+.++++++++++|+|+||+....  .+.+||||+|+||+| +++|.+++++|++
T Consensus       418 ~~~deai~~~N~~~~gLs~~vfT~d~~~~~~~~~~l~~G~v~IN~~~~~~~~~~~PfGG~k~SG~G~~~gg~~~~~~~~~  497 (500)
T TIGR01238       418 RELDQIVDQINQTGYGLTMGVHSRIETTYRWIEKHARVGNCYVNRNQVGAVVGVQPFGGQGLSGTGPKAGGPHYLYRLTQ  497 (500)
T ss_pred             CCHHHHHHHHhCCCCCCeEEEEeCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCccccccCCCccCCHHHHHHHHh
Confidence             799999999999999999999999999999999999999999986543  255799999999999 8999999999999


Q ss_pred             ce
Q 011130          480 VK  481 (493)
Q Consensus       480 ~k  481 (493)
                      .|
T Consensus       498 ~k  499 (500)
T TIGR01238       498 VQ  499 (500)
T ss_pred             hc
Confidence            87


No 81 
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=100.00  E-value=3.5e-78  Score=633.97  Aligned_cols=393  Identities=35%  Similarity=0.545  Sum_probs=367.5

Q ss_pred             eeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhh
Q 011130           83 FPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS  162 (493)
Q Consensus        83 ~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a  162 (493)
                      ++++||+||+++++++.++.+|+++++++|++||+  .|+++|..+|.++|++++++|+++.++|++++++|+|||+.++
T Consensus         1 ~~~~~P~t~~~~~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a   78 (452)
T cd07147           1 LEVTNPYTGEVVARVALAGPDDIEEAIAAAVKAFR--PMRALPAHRRAAILLHCVARLEERFEELAETIVLEAGKPIKDA   78 (452)
T ss_pred             CCccCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH
Confidence            36899999999999999999999999999999999  9999999999999999999999999999999999999999998


Q ss_pred             hhccHHHHHHHHHHHHHhhHHhcCccCCCC-----CCceeEEEeeeeeeE------------------------------
Q 011130          163 AQTEVPMTTRLFRYYAGWADKIQGLTAPAD-----GPYHVQTLHEPIGVA------------------------------  207 (493)
Q Consensus       163 ~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~PlGVv------------------------------  207 (493)
                      +. |+..++..+++++..+.+..+...+..     .+...++.++|+|||                              
T Consensus        79 ~~-ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VIlK  157 (452)
T cd07147          79 RG-EVARAIDTFRIAAEEATRIYGEVLPLDISARGEGRQGLVRRFPIGPVSAITPFNFPLNLVAHKVAPAIAAGCPFVLK  157 (452)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHhCCcccccccccCCCCceeEEEEeceeEEEEEcCCCcHHHHHHHHHHHHHHcCCEEEEE
Confidence            85 999999999999988776654432211     234567889999999                              


Q ss_pred             -----------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCC
Q 011130          208 -----------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGK  264 (493)
Q Consensus       208 -----------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~  264 (493)
                                             |++|+|++. .+.+..|+.||++|+|+||||+.+|+.|++.++.   +|+++|+|||
T Consensus       158 ps~~~p~~~~~l~~~l~~ag~P~g~v~~v~g~-~~~~~~l~~~~~v~~v~fTGs~~~g~~v~~~a~~---~~v~lelgG~  233 (452)
T cd07147         158 PASRTPLSALILGEVLAETGLPKGAFSVLPCS-RDDADLLVTDERIKLLSFTGSPAVGWDLKARAGK---KKVVLELGGN  233 (452)
T ss_pred             CCCCCcHHHHHHHHHHHHcCCCcCcEEEEeCC-ccchhHHhcCCCCCEEEEECCHHHHHHHHHHhCc---CceEeecCCC
Confidence                                   999999984 5678899999999999999999999999998764   6999999999


Q ss_pred             CceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHH
Q 011130          265 SPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEK  344 (493)
Q Consensus       265 ~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~  344 (493)
                      ||+||++|||+|.|++.+++++|+|+||.|+++++||||++++|+|+++|++++.++++|||.++++++||++++.++++
T Consensus       234 ~p~iV~~dadl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~L~~~~~~~~~g~p~~~~~~~gpli~~~~~~~  313 (452)
T cd07147         234 AAVIVDSDADLDFAAQRIIFGAFYQAGQSCISVQRVLVHRSVYDEFKSRLVARVKALKTGDPKDDATDVGPMISESEAER  313 (452)
T ss_pred             CcEEECCCCCHHHHHHHHHHHHHhccCCCCcCCcEEEEchhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEe
Q 011130          345 ILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVF  424 (493)
Q Consensus       345 ~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~  424 (493)
                      +.++|++++++|+++++||..   .|+|++|||+.+++++|+++++|+||||++|++|+|+||||+++|+++|||+++||
T Consensus       314 ~~~~i~~a~~~Ga~~l~gg~~---~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~deai~~~n~~~~gL~~~v~  390 (452)
T cd07147         314 VEGWVNEAVDAGAKLLTGGKR---DGALLEPTILEDVPPDMEVNCEEVFGPVVTVEPYDDFDEALAAVNDSKFGLQAGVF  390 (452)
T ss_pred             HHHHHHHHHHCCCEEEecCCc---CCEEEcCEEEeCCCCCChHHhCcCcCCeEEEEEeCCHHHHHHHHhCCCCCceEEEE
Confidence            999999999999999999875   48999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhcceeEEEECCcCCC-CCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          425 THNLDTANTLMRALRVGSVWINCFDVF-DAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       425 t~d~~~~~~~~~~l~~g~V~VN~~~~~-~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      |+|.++++++++++++|+||||+.+.. .+.+||||+|+||+|+++|.+++++|++.|+|++
T Consensus       391 t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~~pfGG~~~SG~G~~~g~~~~~~~~~~k~i~~  452 (452)
T cd07147         391 TRDLEKALRAWDELEVGGVVINDVPTFRVDHMPYGGVKDSGIGREGVRYAIEEMTEPRLLVI  452 (452)
T ss_pred             CCCHHHHHHHHHHcCcceEEECCCCCCCCCCCCcCCccccccCCCChHHHHHHhcceeEEeC
Confidence            999999999999999999999987654 4679999999999999999999999999999864


No 82 
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=100.00  E-value=9.4e-78  Score=631.19  Aligned_cols=393  Identities=38%  Similarity=0.577  Sum_probs=368.2

Q ss_pred             ecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhc
Q 011130           86 LDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQT  165 (493)
Q Consensus        86 ~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~  165 (493)
                      +||+||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|++++++|++++++|+|||..++.. 
T Consensus         1 ~~P~t~~~~~~~~~~~~~~v~~av~~a~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~-   77 (453)
T cd07099           1 RNPATGEVLGEVPVTDPAEVAAAVARARAAQR--AWAALGVEGRAQRLLRWKRALADHADELAELLHAETGKPRADAGL-   77 (453)
T ss_pred             CCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-
Confidence            58999999999999999999999999999999  999999999999999999999999999999999999999998775 


Q ss_pred             cHHHHHHHHHHHHHhhHHhcCcc-CCC---CCCceeEEEeeeeeeE----------------------------------
Q 011130          166 EVPMTTRLFRYYAGWADKIQGLT-APA---DGPYHVQTLHEPIGVA----------------------------------  207 (493)
Q Consensus       166 Ev~~~~~~l~~~a~~~~~~~~~~-~~~---~~~~~~~~~~~PlGVv----------------------------------  207 (493)
                      |+..+++.++|+++.++++.+.. .+.   ..+...+++++|+|||                                  
T Consensus        78 ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~l~~ALaaGN~vilKps~~  157 (453)
T cd07099          78 EVLLALEAIDWAARNAPRVLAPRKVPTGLLMPNKKATVEYRPYGVVGVISPWNYPLLTPMGDIIPALAAGNAVVLKPSEV  157 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccCcccCCCceeEEEEecceEEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCcc
Confidence            99999999999999887765432 221   1344678899999998                                  


Q ss_pred             -------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceE
Q 011130          208 -------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFI  268 (493)
Q Consensus       208 -------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~i  268 (493)
                                         |++|+|++.+ +.++.|+.| .+|+|+||||+++|+.|++.+++ +++|+++|+|||||+|
T Consensus       158 ~p~~~~~l~~~l~~ag~P~g~~~vv~g~~-~~~~~l~~~-~vd~V~ftGs~~~g~~i~~~aa~-~~~~~~lelgG~~p~i  234 (453)
T cd07099         158 TPLVGELLAEAWAAAGPPQGVLQVVTGDG-ATGAALIDA-GVDKVAFTGSVATGRKVMAAAAE-RLIPVVLELGGKDPMI  234 (453)
T ss_pred             chHHHHHHHHHHHHcCCCCCeEEEEeCCc-hHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHh-cCCeEEEECCCCCeEE
Confidence                               9999999865 678888887 59999999999999999999988 8999999999999999


Q ss_pred             EccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHH
Q 011130          269 VCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKY  348 (493)
Q Consensus       269 V~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~  348 (493)
                      |++|||++.|++.+++++|.++||.|+++++||||++++|+|+++|+++++++++|+|.|+++++||++++.+++++.++
T Consensus       235 V~~dadl~~a~~~i~~~~~~~~GQ~C~a~~ri~V~~~i~d~f~~~l~~~~~~l~~G~~~~~~~~~gp~i~~~~~~~~~~~  314 (453)
T cd07099         235 VLADADLERAAAAAVWGAMVNAGQTCISVERVYVHESVYDEFVARLVAKARALRPGADDIGDADIGPMTTARQLDIVRRH  314 (453)
T ss_pred             ECCCCCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCcccCCcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCH
Q 011130          349 IRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNL  428 (493)
Q Consensus       349 i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~  428 (493)
                      |++++++|+++++||......|+|++|||+.++.++|+++++|+||||++|++|+|.||||+++|+++|||+++|||+|.
T Consensus       315 i~~a~~~ga~~~~gg~~~~~~g~~~~Ptil~~~~~~~~~~~~E~FgPvl~v~~~~~~~eai~~~n~~~~gL~~~i~t~d~  394 (453)
T cd07099         315 VDDAVAKGAKALTGGARSNGGGPFYEPTVLTDVPHDMDVMREETFGPVLPVMPVADEDEAIALANDSRYGLSASVFSRDL  394 (453)
T ss_pred             HHHHHhCCCEEEeCCCcCCCCCeEEecEEEecCCCCCHHHhCCCcCCeeEEEeeCCHHHHHHHHhCCCCCCeEEEEcCCH
Confidence            99999999999999976534689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcceeEEEECCcCC--CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          429 DTANTLMRALRVGSVWINCFDV--FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       429 ~~~~~~~~~l~~g~V~VN~~~~--~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +.++++++++++|+||||+...  ..+.+||||+|+||+|+++|.+++++||+.|+++
T Consensus       395 ~~~~~~~~~l~~G~v~iN~~~~~~~~~~~PfGG~~~SG~g~~~g~~~~~~~t~~k~v~  452 (453)
T cd07099         395 ARAEAIARRLEAGAVSINDVLLTAGIPALPFGGVKDSGGGRRHGAEGLREFCRPKAIA  452 (453)
T ss_pred             HHHHHHHHhCCeeeEEECCCCCCCCCCCCCCCCcccccCCccChHHHHHHhcceEEEe
Confidence            9999999999999999998754  3578999999999999999999999999999985


No 83 
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=100.00  E-value=1.9e-77  Score=628.89  Aligned_cols=396  Identities=43%  Similarity=0.697  Sum_probs=375.1

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||.||++|++++.++.+|+++++++|++|++  .|+++|.++|.++|+++++.|+++.++|++++++|+|||..+++.
T Consensus         1 ~~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~   78 (451)
T cd07103           1 VINPATGEVIGEVPDAGAADADAAIDAAAAAFK--TWRKTTARERAAILRRWADLIRERAEDLARLLTLEQGKPLAEARG   78 (451)
T ss_pred             CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            479999999999999999999999999999999  999999999999999999999999999999999999999999985


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE------------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA------------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv------------------------------------  207 (493)
                       |+..+++.++|++..+++..+...+.. .+...+..++|+|||                                    
T Consensus        79 -ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~VIlKps~~~~  157 (451)
T cd07103          79 -EVDYAASFLEWFAEEARRIYGRTIPSPAPGKRILVIKQPVGVVAAITPWNFPAAMITRKIAPALAAGCTVVLKPAEETP  157 (451)
T ss_pred             -HHHHHHHHHHHHHHHHHHhcCcccccCCCCcceEEEEeeceEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccCc
Confidence             999999999999988877666544432 344678899999999                                    


Q ss_pred             -----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEc
Q 011130          208 -----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVC  270 (493)
Q Consensus       208 -----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~  270 (493)
                                       |++++|++.+.+.++.|+.|+++|+|+||||+.+|+.|.+.+++ +++|+++|+|||||+||+
T Consensus       158 ~~~~~l~~~l~~aglP~g~v~~v~~~~~~~~~~l~~~~~vd~V~ftGs~~~g~~v~~~aa~-~~~~~~lelgG~~~~iV~  236 (451)
T cd07103         158 LSALALAELAEEAGLPAGVLNVVTGSPAEIGEALCASPRVRKISFTGSTAVGKLLMAQAAD-TVKRVSLELGGNAPFIVF  236 (451)
T ss_pred             HHHHHHHHHHHHcCCCcccEEEEecCchhHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHh-cCCcEEEECCCCCeEEEC
Confidence                             89999998777788899999999999999999999999999998 899999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHH
Q 011130          271 EDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIR  350 (493)
Q Consensus       271 ~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~  350 (493)
                      +|||++.|++.|++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++++.+||++++.+++++.++|+
T Consensus       237 ~dadl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~~~f~~~l~~~~~~~~~g~~~~~~~~~gp~i~~~~~~~~~~~i~  316 (451)
T cd07103         237 DDADLDKAVDGAIASKFRNAGQTCVCANRIYVHESIYDEFVEKLVERVKKLKVGNGLDEGTDMGPLINERAVEKVEALVE  316 (451)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCCCeeEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcCcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHH
Q 011130          351 SGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDT  430 (493)
Q Consensus       351 ~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~  430 (493)
                      +++.+|+++++||......|+|++|||+.++++++.++++|+||||++|++|+|++|||+++|+++|||+++|||+|.+.
T Consensus       317 ~a~~~ga~~l~gg~~~~~~g~~~~Ptil~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~~~i~t~d~~~  396 (451)
T cd07103         317 DAVAKGAKVLTGGKRLGLGGYFYEPTVLTDVTDDMLIMNEETFGPVAPIIPFDTEDEVIARANDTPYGLAAYVFTRDLAR  396 (451)
T ss_pred             HHHHCCCEEEeCCCcCCCCCcEECCEEeeCCCCcCHHHhCCCCCceEEEEEECCHHHHHHHHhCCCCCceEEEECCCHHH
Confidence            99999999999997654468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          431 ANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       431 ~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      ++++++++++|+|+||++....+.+||||+|+||+|+++|++++++|++.|+++
T Consensus       397 ~~~~~~~l~~g~v~vN~~~~~~~~~pfgG~~~SG~G~~~g~~~~~~~~~~k~v~  450 (451)
T cd07103         397 AWRVAEALEAGMVGINTGLISDAEAPFGGVKESGLGREGGKEGLEEYLETKYVS  450 (451)
T ss_pred             HHHHHHhCCcceEEECCCCCCCCCCCcCCCccCcCCccchHHHHHHHhceeEEe
Confidence            999999999999999998777788999999999999999999999999999875


No 84 
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde  derived from cellular lipid peroxidation.
Probab=100.00  E-value=2.7e-77  Score=629.14  Aligned_cols=397  Identities=33%  Similarity=0.553  Sum_probs=369.2

Q ss_pred             ecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhc
Q 011130           86 LDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQT  165 (493)
Q Consensus        86 ~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~  165 (493)
                      +||+||++|++++.++.+|+++++++|++||+  .|+++|.++|.++|++++++|.++.++|++++++|+|||+.++...
T Consensus         1 ~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~   78 (465)
T cd07098           1 YDPATGQHLGSVPADTPEDVDEAIAAARAAQR--EWAKTSFAERRKVLRSLLKYILENQEEICRVACRDTGKTMVDASLG   78 (465)
T ss_pred             CCCCCCCeeEEeeCCCHHHHHHHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence            59999999999999999999999999999999  9999999999999999999999999999999999999999998766


Q ss_pred             cHHHHHHHHHHHHHhhHHhcCc-cCCCC---CCceeEEEeeeeeeE----------------------------------
Q 011130          166 EVPMTTRLFRYYAGWADKIQGL-TAPAD---GPYHVQTLHEPIGVA----------------------------------  207 (493)
Q Consensus       166 Ev~~~~~~l~~~a~~~~~~~~~-~~~~~---~~~~~~~~~~PlGVv----------------------------------  207 (493)
                      |+..+++.++|++..+++.... ..+..   .....++.++|+|||                                  
T Consensus        79 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~n~P~~~~~~~~~~ALaaGN~VIlKps~~  158 (465)
T cd07098          79 EILVTCEKIRWTLKHGEKALRPESRPGGLLMFYKRARVEYEPLGVVGAIVSWNYPFHNLLGPIIAALFAGNAIVVKVSEQ  158 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcccCCccccCCceeEEEEecceeEEEEcccCcHHHHHHHHHHHHHHcCCEEEEECCCc
Confidence            9999999999998876654322 22211   123457789999998                                  


Q ss_pred             -----------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCC
Q 011130          208 -----------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGK  264 (493)
Q Consensus       208 -----------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~  264 (493)
                                             |++|+|++.+ ++++.|+.||+|+.|.||||+.+|+.|.+.+++ ++||+++|+|||
T Consensus       159 ~p~~~~~~~~~~~~~l~~aGlP~gvv~~v~g~~-~~~~~L~~~~~v~~V~ftGs~~~g~~v~~~a~~-~~~~~~lelgG~  236 (465)
T cd07098         159 VAWSSGFFLSIIRECLAACGHDPDLVQLVTCLP-ETAEALTSHPVIDHITFIGSPPVGKKVMAAAAE-SLTPVVLELGGK  236 (465)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCeEEEEECCH-HHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHh-cCCeEEEECCCC
Confidence                                   9999999855 788999999999999999999999999999988 899999999999


Q ss_pred             CceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHH
Q 011130          265 SPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEK  344 (493)
Q Consensus       265 ~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~  344 (493)
                      ||+||++|||++.|++.|++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||++++.++++
T Consensus       237 ~~~iV~~dadl~~a~~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~L~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~  316 (465)
T cd07098         237 DPAIVLDDADLDQIASIIMRGTFQSSGQNCIGIERVIVHEKIYDKLLEILTDRVQALRQGPPLDGDVDVGAMISPARFDR  316 (465)
T ss_pred             CeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEcHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcE
Q 011130          345 ILKYIRSGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLA  420 (493)
Q Consensus       345 ~~~~i~~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~  420 (493)
                      +.++|++++.+|+++++||....    ..|+|++|||+.+++++|.++++|+||||++|++|+|+||||+++|+++|||+
T Consensus       317 ~~~~i~~a~~~Ga~~~~gg~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gLs  396 (465)
T cd07098         317 LEELVADAVEKGARLLAGGKRYPHPEYPQGHYFPPTLLVDVTPDMKIAQEEVFGPVMVVMKASDDEEAVEIANSTEYGLG  396 (465)
T ss_pred             HHHHHHHHHHCCCEEEeCCccCCcCcCCCCcEEcCEEEeCCCCCCHHHhCCCcCCeEEEEEeCCHHHHHHHHhCCCCCce
Confidence            99999999999999999986532    25899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCHHHHHHHHHhcceeEEEECCcCC--CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          421 AGVFTHNLDTANTLMRALRVGSVWINCFDV--FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       421 a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~--~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      ++|||+|.+.+.++++++++|.||||..++  ..+.+||||+|+||+|+++|.+++++|++.|++++.
T Consensus       397 a~i~t~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~~~PfgG~k~SG~G~~~g~~~~~~~~~~k~~~~~  464 (465)
T cd07098         397 ASVFGKDIKRARRIASQLETGMVAINDFGVNYYVQQLPFGGVKGSGFGRFAGEEGLRGLCNPKSVTED  464 (465)
T ss_pred             EEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCcCccccccCCccChHHHHHHhheeEEEEEe
Confidence            999999999999999999999999998653  347899999999999999999999999999999764


No 85 
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00  E-value=3.6e-79  Score=594.52  Aligned_cols=421  Identities=42%  Similarity=0.774  Sum_probs=406.5

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      +.||+|+|+.+..++++.++||.|+.+|++++.++..|+++|+.+|+.||..|.|++++..+|.+.|.++++++++|.+|
T Consensus       423 ~~fi~g~fv~~~~~~t~~tinp~~~~~ic~~~la~v~dvd~av~aak~afe~g~w~~~sar~rg~~~y~la~lme~h~ee  502 (881)
T KOG2452|consen  423 QLFIGGEFVDAEGAKTSETINPTDGSVICQVSLAQVTDVDKAVAAAKGAFENGRWGKISARDRGRLMYRLADLMEQHQEE  502 (881)
T ss_pred             hhccCcEeecccCCccccccCCCCCCeeEEeehhHhhhHHHHHHHHhhhhhcCcccccchhhhhhhhhhccchhhhccch
Confidence            56999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCC----CceeEEEeeeeeeE---------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADG----PYHVQTLHEPIGVA---------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~----~~~~~~~~~PlGVv---------------  207 (493)
                      |+.+.+++.|.-+..+...-+...++.+||+++|.+++.+.++|...    .....++++|+|||               
T Consensus       503 lat~e~ldagavytlalkthvgmsi~~~ryfagwcdkiqg~tipi~~arpn~nl~lt~~epigv~g~i~pwnyplmmlsw  582 (881)
T KOG2452|consen  503 LATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIPINQARPNRNLTLTRKEPVGVCGIIIPWNYPLMMLSW  582 (881)
T ss_pred             hhhhhhccccceeeeeehhhcCceehHHHHhhhhhhhccCceeccccCCCCCcceeeecCcceeEEEeccCCchHHHHHH
Confidence            99999999999888887777899999999999999999999888542    34678999999999               


Q ss_pred             -----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEc
Q 011130          208 -----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVC  270 (493)
Q Consensus       208 -----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~  270 (493)
                                       |++|+++|.|.-+|+.|..||+|++|-||||+++|+.|++.++.++.|+|.|||||++|+||+
T Consensus       583 k~aaclaa~~~k~~e~sgvini~~gsgslvg~rls~hpdvrkigftgsteig~~im~sca~snikkvslelgg~sp~iif  662 (881)
T KOG2452|consen  583 KTAACLAAQVLKFAELTGVVNVLPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCAISNVKKVSLELGGESPFIIF  662 (881)
T ss_pred             HHHHHHHHHHhhhhhhcceEEEecCCcchhccccccCCccceeccccchHHHHHHHHHHhhcchheeeeeccCCCceEEE
Confidence                             999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHH
Q 011130          271 EDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIR  350 (493)
Q Consensus       271 ~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~  350 (493)
                      .|+|+++|+.....+.|++-|..|++..|+||..+|.|+|++++.+.++++++|+|+|.+++.||.-...+..++.+|++
T Consensus       663 ad~dl~kav~~~~~~vff~kgenciaagr~fi~~sihd~fv~~~vee~~~~~ig~pldr~t~hgpqnh~ahl~kl~ey~~  742 (881)
T KOG2452|consen  663 ADCDLNKAVQMGMSSVFFSKGENCIAAGRLFVEDSIHDEFVRRVVEEVRKMKVGNPLDRDTDHGPQNHHAHLVKLMEYCQ  742 (881)
T ss_pred             ecCcHHHHHHhhccceeecCCcchhhhcceeehhhhhHHHHHHHHHHHHhhccCCcccccccCCchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeC--CHHHHHHHHHcCCCCcEEEEecCCH
Q 011130          351 SGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK--DLDEVIQRSNASQYGLAAGVFTHNL  428 (493)
Q Consensus       351 ~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~--~~~eai~~~n~~~~gl~a~v~t~d~  428 (493)
                      .+++.||++.|||++.+..|+|++|||+.++.++|.+..||-||||++|.+|+  |+|++++.+|.+++||+++|||+|.
T Consensus       743 ~~v~~ga~~~~gg~~~~r~g~~f~pti~s~i~d~~f~a~eesfgpim~is~f~d~d~~~vl~ran~tefgla~gvftrd~  822 (881)
T KOG2452|consen  743 HGVKEGATLVCGGNQVPRPGFFFEPTVFTDVEDHMFIAKEESFGPVMIISRFADGDLDAVLSRANATEFGLASGVFTRDI  822 (881)
T ss_pred             HHhccCcEEEECCccCCCCCcccCCeeecccchhhhhhhccccCceEEEEecCCCCHHHHHhhccccccccccceeeccc
Confidence            99999999999999999999999999999999999999999999999999996  5899999999999999999999999


Q ss_pred             HHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          429 DTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       429 ~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      .++.++++.|.+|+|+||.+...+...||||+|+||+|+..|..+|.+|.+.|+|++.+
T Consensus       823 ~k~l~v~~~l~agtvfvnty~ktdvaapfggfkqsgfgkd~ge~alneyl~~ktit~ey  881 (881)
T KOG2452|consen  823 NKALYVSDKLQAGTVFVNTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRVKTVTFEY  881 (881)
T ss_pred             chhhhhhhhhccceEEEeeccccccccCCCCccccccccchhHHHHhhheeeEEEEeeC
Confidence            99999999999999999999888889999999999999999999999999999998753


No 86 
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=100.00  E-value=2.9e-77  Score=625.16  Aligned_cols=386  Identities=37%  Similarity=0.575  Sum_probs=364.0

Q ss_pred             CCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHH
Q 011130           91 GDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMT  170 (493)
Q Consensus        91 g~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~  170 (493)
                      |++|++++.++.+++++++++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||..++.. |+..+
T Consensus         1 ~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~-ev~~~   77 (443)
T cd07152           1 GAVLGEVGVADAADVDRAAARAAAAQR--AWAATPPRERAAVLRRAADLLEEHADEIADWIVRESGSIRPKAGF-EVGAA   77 (443)
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHH-HHHHH
Confidence            688999999999999999999999999  999999999999999999999999999999999999999999875 99999


Q ss_pred             HHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------------------------------
Q 011130          171 TRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------------------------------  207 (493)
Q Consensus       171 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------------------------------  207 (493)
                      ++.+++++.+.++..+...+...+...+..++|+|||                                           
T Consensus        78 i~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~~l  157 (443)
T cd07152          78 IGELHEAAGLPTQPQGEILPSAPGRLSLARRVPLGVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDPRTPVSGGVVI  157 (443)
T ss_pred             HHHHHHHHHhHHHhCCccccccCCceeEEEEecceEEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCcccchhHHHHH
Confidence            9999999987766555444433445567899999999                                           


Q ss_pred             -----------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHH
Q 011130          208 -----------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVD  276 (493)
Q Consensus       208 -----------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~  276 (493)
                                 |++|+|++ +.+.++.|+.||++|+|+||||+.+|+.|++.+++ ++||+++|+|||||+||++|||++
T Consensus       158 ~~~~~~ag~P~gvv~~v~g-~~~~~~~l~~~~~v~~V~fTGs~~~g~~i~~~aa~-~~~~~~lElGGk~~~iV~~dAdl~  235 (443)
T cd07152         158 ARLFEEAGLPAGVLHVLPG-GADAGEALVEDPNVAMISFTGSTAVGRKVGEAAGR-HLKKVSLELGGKNALIVLDDADLD  235 (443)
T ss_pred             HHHHHHhCcCcCcEEEecC-ChHHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHh-cCCcEEEECCCCCeEEECCCCCHH
Confidence                       89999998 56788999999999999999999999999999988 899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCC
Q 011130          277 KAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGG  356 (493)
Q Consensus       277 ~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~g  356 (493)
                      .|++.+++++|.|+||.|+++++||||++++|+|+++|++++.++++|+|.++++.+||++++.+++++.++|++++++|
T Consensus       236 ~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~G  315 (443)
T cd07152         236 LAASNGAWGAFLHQGQICMAAGRHLVHESVADAYTAKLAAKAKHLPVGDPATGQVALGPLINARQLDRVHAIVDDSVAAG  315 (443)
T ss_pred             HHHHHHHHHHHhhcCCCCcCCeeEEEcHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHH
Q 011130          357 AKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMR  436 (493)
Q Consensus       357 a~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~  436 (493)
                      +++++||..   .|+|++|||+.+++++|+++++|+||||++|++|+|.||||+++|+++|||+++|||+|.+.+.++++
T Consensus       316 a~vl~gg~~---~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gL~a~v~t~d~~~a~~~~~  392 (443)
T cd07152         316 ARLEAGGTY---DGLFYRPTVLSGVKPGMPAFDEEIFGPVAPVTVFDSDEEAVALANDTEYGLSAGIISRDVGRAMALAD  392 (443)
T ss_pred             CEEEeccCc---CCEEEcCEEEecCCCCChhhhccccCCeEEEEeeCCHHHHHHHHhCCCccceEEEECCCHHHHHHHHH
Confidence            999999974   48999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcceeEEEECCcCCCC-CCCCccCCCCCCCC-CcchHHHHHhhhhceEEE
Q 011130          437 ALRVGSVWINCFDVFD-AAIPFGGYKQSGQG-REKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       437 ~l~~g~V~VN~~~~~~-~~~pfGG~~~SG~G-~~~g~~~l~~~~~~k~v~  484 (493)
                      ++++|+||||++.... +.+||||+|+||+| +++|+++|++|++.|+++
T Consensus       393 ~l~~G~v~iN~~~~~~~~~~pfGG~~~SG~G~~~~g~~~l~~~~~~k~~~  442 (443)
T cd07152         393 RLRTGMLHINDQTVNDEPHNPFGGMGASGNGSRFGGPANWEEFTQWQWVT  442 (443)
T ss_pred             hCCcCeEEECCCCCCCCCCCCCCCcccccCCCccCcHHHHHHhhceeEEe
Confidence            9999999999876544 67999999999999 889999999999999875


No 87 
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=100.00  E-value=2.5e-77  Score=650.74  Aligned_cols=413  Identities=25%  Similarity=0.326  Sum_probs=367.7

Q ss_pred             CccccceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHH-ccCCCCCCCCHHHHHHHHHHHHHHHH
Q 011130           63 VDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKA-FDEGPWPRMTAYERSKIILRFADLLE  141 (493)
Q Consensus        63 ~~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A-~~~~~w~~~~~~~R~~iL~~la~~l~  141 (493)
                      +...++||||+|+.+ ++.+++++||.||+++++++.++ +|+++||++|++| |+  .|+++|..+|.++|++++++|+
T Consensus         2 ~~~~~~~i~G~~~~~-~~~~~~~~nP~tg~~i~~~~~~~-~dv~~Av~~A~~A~~~--~W~~~~~~eR~~~L~~~a~~l~   77 (675)
T PRK11563          2 MQKLQSYVAGRWQTG-QGEGRPLHDAVTGEPVARVSSEG-LDFAAALAYAREVGGP--ALRALTFHERAAMLKALAKYLL   77 (675)
T ss_pred             CccccceecCEEEcC-CCCceeccCCCCCCEEEEEcCCc-HHHHHHHHHHHHhhhh--hhhcCCHHHHHHHHHHHHHHHH
Confidence            345579999999975 56789999999999999999987 6999999999998 67  8999999999999999999999


Q ss_pred             HhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhc--------CccCCCCC-C-ceeEEEeeee-eeE---
Q 011130          142 RHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQ--------GLTAPADG-P-YHVQTLHEPI-GVA---  207 (493)
Q Consensus       142 ~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~--------~~~~~~~~-~-~~~~~~~~Pl-GVv---  207 (493)
                      ++.++|++ +++|+|||+.+++. |+..+++.++||+.++++..        +...+... + ...+..++|+ |||   
T Consensus        78 ~~~~ela~-l~~e~GK~~~~a~~-ev~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~GVv~~I  155 (675)
T PRK11563         78 ERKEELYA-LSAQTGATRRDSWI-DIEGGIGTLFTYASKGRRELPNDTVLVEGEVEPLSKGGTFAGRHILTPLEGVAVHI  155 (675)
T ss_pred             HhHHHHHH-HHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccCCccccccCCCcccceEEEeecCceEEEE
Confidence            99999999 58999999999985 99999999999999886542        32222211 1 2246788997 998   


Q ss_pred             ---------------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEe
Q 011130          208 ---------------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFT  236 (493)
Q Consensus       208 ---------------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fT  236 (493)
                                                                         |++|+|+|.+   +..+..++.+++|.||
T Consensus       156 ~PwNfP~~~~~~~i~pALaaGN~VV~KPse~tp~~a~~l~~~~~eaG~~P~gv~~vv~g~~---~~~~~~~~~i~~v~FT  232 (675)
T PRK11563        156 NAFNFPVWGMLEKLAPAFLAGVPAIVKPATATAYLTEAVVRLIVESGLLPEGALQLICGSA---GDLLDHLDGQDVVTFT  232 (675)
T ss_pred             CCCchHHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCCcEEEeeCCH---HHHhhcCCCCCEEEEE
Confidence                                                               6899999853   2334444679999999


Q ss_pred             cCcHHHHHHHHH--HhhcCCCceeEecCCCCceEEccCCC-----HHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHH
Q 011130          237 GSTTTGKIVLQL--AAKSNLKPVTLELGGKSPFIVCEDAD-----VDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQ  309 (493)
Q Consensus       237 Gs~~~g~~v~~~--a~~~~~~pv~lelgG~~p~iV~~daD-----l~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~  309 (493)
                      ||+++|+.|++.  ++. +++|+++|||||||+||++|||     +|.|++.+++++|.|+||.|++++|||||+++||+
T Consensus       233 GS~~~G~~i~~~~~a~~-~~~~~~lELGGknp~IV~~DAd~~~~dld~aa~~i~~~~f~~aGQ~C~a~~rv~V~~~i~d~  311 (675)
T PRK11563        233 GSAATAQKLRAHPNVVA-NSVPFTAEADSLNAAILGPDATPGTPEFDLFVKEVVREMTVKAGQKCTAIRRAIVPRALVDA  311 (675)
T ss_pred             CcHHHHHHHHhhhhhhh-CCceEEEecCCcCceEECCCCCcCchhHHHHHHHHHHHHHHhCCCccccceeEEeeHHHHHH
Confidence            999999999985  335 8999999999999999999995     99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCccc-------CCCCceeeceEEecCC
Q 011130          310 FVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERL-------GAKGYYIKPTVFTGVK  382 (493)
Q Consensus       310 f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~-------~~~g~~~~Ptvl~~~~  382 (493)
                      |+++|+++++++++|+|.++++++|||+++.+++++.++|++|+++ +++++||...       ...|+|++|||+.+++
T Consensus       312 f~~~l~~~~~~l~vG~p~d~~t~~GPli~~~~~~~i~~~i~~a~~~-a~vl~Gg~~~~~~~~~~~~~g~f~~PTvl~~v~  390 (675)
T PRK11563        312 VIEALRARLAKVVVGDPRLEGVRMGALASLEQREDVREKVAALLAA-AEIVFGGPDSFEVVGADAEKGAFFPPTLLYCDD  390 (675)
T ss_pred             HHHHHHHHHhcCccCCCCCCCCcccCCcCHHHHHHHHHHHHHHHhC-CEEEECCcccccccCCCCCCCeeECCEEEeccC
Confidence            9999999999999999999999999999999999999999999999 9999999531       1358999999999998


Q ss_pred             C--CccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcc--eeEEEECCcCC--------
Q 011130          383 D--DMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALR--VGSVWINCFDV--------  450 (493)
Q Consensus       383 ~--~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~--~g~V~VN~~~~--------  450 (493)
                      +  ++.++++|+||||++|++|+|.||||+++|+++|||+++|||+|.+.+.+++++++  +|.||||+.+.        
T Consensus       391 ~~~~~~i~~eEiFGPVl~V~~~~~~~eai~~aN~s~~gL~asvft~d~~~a~~~~~~l~~~~G~v~iN~~~~~~~~~~~~  470 (675)
T PRK11563        391 PLEAPAVHDVEAFGPVSTLMPYDDLDEAIELAARGKGSLVASLVTADPEVARELVLGAAPWHGRLLVLNRESAKESTGHG  470 (675)
T ss_pred             chhhhhHhhccccCCceEEEecCCHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHhcCCEEEEcCccccccccCCC
Confidence            8  57999999999999999999999999999999999999999999999999999997  99999997532        


Q ss_pred             C-CCCCCccCCCCCCCCCc-chHHHHHhhhhceEEEEe
Q 011130          451 F-DAAIPFGGYKQSGQGRE-KGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       451 ~-~~~~pfGG~~~SG~G~~-~g~~~l~~~~~~k~v~~~  486 (493)
                      . .+.+||||+|.||+|++ +|.+++++|++.|++...
T Consensus       471 ~~~~~~pfGG~k~SG~G~~~~g~~~~~~f~~~k~~~~~  508 (675)
T PRK11563        471 SPLPQLVHGGPGRAGGGEELGGLRGVKHYMQRTAVQGS  508 (675)
T ss_pred             CCCcCCCcCCCCCCCCCccccchhHHHHhheeeeeecC
Confidence            1 26789999999999999 569999999999998654


No 88 
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the  aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC  of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=100.00  E-value=4.6e-77  Score=626.32  Aligned_cols=397  Identities=45%  Similarity=0.787  Sum_probs=374.1

Q ss_pred             eecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhh
Q 011130           85 TLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQ  164 (493)
Q Consensus        85 v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~  164 (493)
                      ++||+||+++++++.++.+++++++++|++|++  .|+++|.++|.++|++++++|+++.++|++++++|+|||..++..
T Consensus         1 ~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~   78 (455)
T cd07093           1 NFNPATGEVLAKVPEGGAAEVDAAVAAAKEAFP--GWSRMSPAERARILHKVADLIEARADELALLESLDTGKPITLART   78 (455)
T ss_pred             CcCCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            369999999999999999999999999999999  999999999999999999999999999999999999999988766


Q ss_pred             ccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------------------------
Q 011130          165 TEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------------------------  207 (493)
Q Consensus       165 ~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------------------------  207 (493)
                      .|+..+++.++++++...+..+...+...+...++.++|+|||                                     
T Consensus        79 ~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~N~P~~~~~~~~~~AL~aGN~VIlkps~~~p~  158 (455)
T cd07093          79 RDIPRAAANFRFFADYILQLDGESYPQDGGALNYVLRQPVGVAGLITPWNLPLMLLTWKIAPALAFGNTVVLKPSEWTPL  158 (455)
T ss_pred             HHHHHHHHHHHHHHHhHHHhCCccccCCCCceEEEEEEeeeEEEEECCCChHHHHHHHHHHHHHhcCCEEEeECCCcCcH
Confidence            6999999999999988776554444433345667889999999                                     


Q ss_pred             ----------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEcc
Q 011130          208 ----------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCE  271 (493)
Q Consensus       208 ----------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~  271 (493)
                                      |++++|++++.+.++.|+.|+++++|+||||+.+|+.|++.+++ ++||+++|+|||||+||++
T Consensus       159 ~~~~l~~~l~~aglP~g~v~~v~g~~~~~~~~L~~~~~i~~V~ftGs~~~g~~v~~~aa~-~~~~~~lelgG~~~~iV~~  237 (455)
T cd07093         159 TAWLLAELANEAGLPPGVVNVVHGFGPEAGAALVAHPDVDLISFTGETATGRTIMRAAAP-NLKPVSLELGGKNPNIVFA  237 (455)
T ss_pred             HHHHHHHHHHhcCCCccceEEEecCchHHHHHHhcCCCccEEEEECCHHHHHHHHHHHhh-cccceEeecCCCCceEECC
Confidence                            89999998777888999999999999999999999999999998 8999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHH
Q 011130          272 DADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRS  351 (493)
Q Consensus       272 daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~  351 (493)
                      |||++.|++.|++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++++++||+++..+++++.++|++
T Consensus       238 dAdl~~a~~~i~~~~~~~~GQ~C~a~~~v~v~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~  317 (455)
T cd07093         238 DADLDRAVDAAVRSSFSNNGEVCLAGSRILVQRSIYDEFLERFVERAKALKVGDPLDPDTEVGPLISKEHLEKVLGYVEL  317 (455)
T ss_pred             CCCHHHHHHHHHHHHHhccCCCcCCCceEEEcHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCC
Q 011130          352 GVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHN  427 (493)
Q Consensus       352 a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d  427 (493)
                      ++++|+++++||....    ..|+|++|||+.+++++++++++|+||||++|++|+|.+|||+++|+++|||+++|||+|
T Consensus       318 a~~~ga~v~~gg~~~~~~~~~~~~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gls~~i~t~d  397 (455)
T cd07093         318 ARAEGATILTGGGRPELPDLEGGYFVEPTVITGLDNDSRVAQEEIFGPVVTVIPFDDEEEAIELANDTPYGLAAYVWTRD  397 (455)
T ss_pred             HHHCCCEEEeCCCccccccCCCCceECCEEEecCCCCChHHhCCCCCceEEEEeeCCHHHHHHHHhCCCCCceEEEECCC
Confidence            9999999999997543    358999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          428 LDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       428 ~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      .+.++++++++++|+|+||++....+.+||||+|+||+|+++|.+++++|++.|+++
T Consensus       398 ~~~~~~~~~~l~~g~v~iN~~~~~~~~~pfgG~~~SG~G~~~g~~~~~~~~~~k~~~  454 (455)
T cd07093         398 LGRAHRVARRLEAGTVWVNCWLVRDLRTPFGGVKASGIGREGGDYSLEFYTELKNVC  454 (455)
T ss_pred             HHHHHHHHHhCCcceEEECCCCCCCCCCCcCCCccCcCCCCchHHHHHHHhceeEEe
Confidence            999999999999999999998777778999999999999999999999999999985


No 89 
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=100.00  E-value=7.5e-77  Score=621.85  Aligned_cols=389  Identities=36%  Similarity=0.543  Sum_probs=363.0

Q ss_pred             eeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhh
Q 011130           84 PTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSA  163 (493)
Q Consensus        84 ~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~  163 (493)
                      +++||+||+++++++.++.+++++++++|+++     |+++|..+|.++|++++++|++++++|++++++|+|||+.++.
T Consensus         2 ~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~~-----~~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~   76 (451)
T cd07146           2 EVRNPYTGEVVGTVPAGTEEALREALALAASY-----RSTLTRYQRSAILNKAAALLEARREEFARLITLESGLCLKDTR   76 (451)
T ss_pred             CccCCCCCCEEEEEcCCCHHHHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            57899999999999999999999999999764     7789999999999999999999999999999999999999997


Q ss_pred             hccHHHHHHHHHHHHHhhHHhcCccCCCC-----CCceeEEEeeeeeeE-------------------------------
Q 011130          164 QTEVPMTTRLFRYYAGWADKIQGLTAPAD-----GPYHVQTLHEPIGVA-------------------------------  207 (493)
Q Consensus       164 ~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~PlGVv-------------------------------  207 (493)
                      . |+..+++.++|++....+..+...+..     .+...+..++|+|||                               
T Consensus        77 ~-ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~P~N~P~~~~~~~~~~ALaaGN~VilKp  155 (451)
T cd07146          77 Y-EVGRAADVLRFAAAEALRDDGESFSCDLTANGKARKIFTLREPLGVVLAITPFNHPLNQVAHKIAPAIAANNRIVLKP  155 (451)
T ss_pred             H-HHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEEEEeccceEEEEccCChHHHHHHHHHHHHHHcCCEEEEEC
Confidence            5 999999999999988776655433321     344567899999998                               


Q ss_pred             ----------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCC
Q 011130          208 ----------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKS  265 (493)
Q Consensus       208 ----------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~  265 (493)
                                            |++|++++.+.++++.|+.||++|+|+||||+.+|+.|.+.++   ++++++|+||||
T Consensus       156 s~~~p~~~~~l~~~l~~aglP~g~v~~v~g~~~~~~~~l~~~~~i~~V~fTGs~~~g~~i~~~a~---~~~~~lElGG~~  232 (451)
T cd07146         156 SEKTPLSAIYLADLLYEAGLPPDMLSVVTGEPGEIGDELITHPDVDLVTFTGGVAVGKAIAATAG---YKRQLLELGGND  232 (451)
T ss_pred             CCCchHHHHHHHHHHHHcCcCccceEEEecCchHHHHHHhcCCCCCEEEEECCHHHHHHHHHHhc---CCceeeecCCCc
Confidence                                  8999999877788999999999999999999999999998764   479999999999


Q ss_pred             ceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHH
Q 011130          266 PFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKI  345 (493)
Q Consensus       266 p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~  345 (493)
                      |+||++|||++.|++.|++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.|+++.+||++++.+++++
T Consensus       233 p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~~g~p~~~~~~~gpli~~~~~~~v  312 (451)
T cd07146         233 PLIVMDDADLERAATLAVAGSYANSGQRCTAVKRILVHESVADEFVDLLVEKSAALVVGDPMDPATDMGTVIDEEAAIQI  312 (451)
T ss_pred             eEEECCCCCHHHHHHHHHHHHHhhCCCCCCCCceEEEchHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEec
Q 011130          346 LKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFT  425 (493)
Q Consensus       346 ~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t  425 (493)
                      .++|++++++|+++++||..   .|+|++|||+.+++++|+++++|+||||++|++|+|+||||+++|+++|||+++|||
T Consensus       313 ~~~v~~a~~~Ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gL~~~i~t  389 (451)
T cd07146         313 ENRVEEAIAQGARVLLGNQR---QGALYAPTVLDHVPPDAELVTEETFGPVAPVIRVKDLDEAIAISNSTAYGLSSGVCT  389 (451)
T ss_pred             HHHHHHHHhCCCEEEeCCCc---CCEEEcCEEeecCCCCCHHHhCCCCCCeEEEEEeCCHHHHHHHHhCCCCCceEEEEC
Confidence            99999999999999999864   489999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcceeEEEECCcCCC-CCCCCccCCCCCCC-CCcchHHHHHhhhhceEEE
Q 011130          426 HNLDTANTLMRALRVGSVWINCFDVF-DAAIPFGGYKQSGQ-GREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       426 ~d~~~~~~~~~~l~~g~V~VN~~~~~-~~~~pfGG~~~SG~-G~~~g~~~l~~~~~~k~v~  484 (493)
                      +|.+.++++++++++|+||||+.+.. .+.+||||+|+||+ |+++|++++++|++.|+++
T Consensus       390 ~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~~PfGG~k~SG~~g~~~g~~~~~~f~~~k~~~  450 (451)
T cd07146         390 NDLDTIKRLVERLDVGTVNVNEVPGFRSELSPFGGVKDSGLGGKEGVREAMKEMTNVKTYS  450 (451)
T ss_pred             CCHHHHHHHHHHCCcceEEECCCCCCCCCCCCcCcccccCCCcccChHHHHHHHhceeEEe
Confidence            99999999999999999999986554 46799999999995 8999999999999999875


No 90 
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA)  to succinate.  SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731).  The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=100.00  E-value=1.3e-76  Score=617.17  Aligned_cols=374  Identities=36%  Similarity=0.566  Sum_probs=352.2

Q ss_pred             HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHh
Q 011130          105 VNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKI  184 (493)
Q Consensus       105 v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~  184 (493)
                      ++++|++|++||+  .|+.+|.++|.++|.+++++|+++.++|++++++|+|||..++.. |+..+++.++|++..+++.
T Consensus         1 v~~av~~A~~A~~--~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~~~~~~~~   77 (429)
T cd07100           1 IEAALDRAHAAFL--AWRKTSFAERAALLRKLADLLRERKDELARLITLEMGKPIAEARA-EVEKCAWICRYYAENAEAF   77 (429)
T ss_pred             CHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            4789999999999  999999999999999999999999999999999999999999985 9999999999999988876


Q ss_pred             cCc-cCCCCCCceeEEEeeeeeeE-----------------------------------------------------eEE
Q 011130          185 QGL-TAPADGPYHVQTLHEPIGVA-----------------------------------------------------GVL  210 (493)
Q Consensus       185 ~~~-~~~~~~~~~~~~~~~PlGVv-----------------------------------------------------gvv  210 (493)
                      ... ..+.. +...++.++|+|||                                                     |++
T Consensus        78 ~~~~~~~~~-~~~~~~~~~P~GvV~~I~P~N~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~l~~aglP~gvv  156 (429)
T cd07100          78 LADEPIETD-AGKAYVRYEPLGVVLGIMPWNFPFWQVFRFAAPNLMAGNTVLLKHASNVPGCALAIEELFREAGFPEGVF  156 (429)
T ss_pred             cCCeeccCC-CceEEEEEEeeeEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHcCCCcCcE
Confidence            432 23322 44567899999999                                                     999


Q ss_pred             EeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhc
Q 011130          211 NIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQ  290 (493)
Q Consensus       211 ~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~  290 (493)
                      |+|++.+ +.+..|+.|+++++|.||||+++|+.|++.+++ ++||+++|+|||||+||++|||++.|++.|++++|.|+
T Consensus       157 ~~v~g~~-~~~~~l~~~~~i~~v~fTGs~~~g~~i~~~aa~-~~~~~~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~  234 (429)
T cd07100         157 QNLLIDS-DQVEAIIADPRVRGVTLTGSERAGRAVAAEAGK-NLKKSVLELGGSDPFIVLDDADLDKAVKTAVKGRLQNA  234 (429)
T ss_pred             EEEeCCc-hhHHHHhcCCCCCEEEEECcHHHHHHHHHHHhh-cCcceEEecCCCCeeEECCCCCHHHHHHHHHHHHHhcc
Confidence            9999854 567889999999999999999999999999988 89999999999999999999999999999999999999


Q ss_pred             CCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCC
Q 011130          291 GQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKG  370 (493)
Q Consensus       291 GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g  370 (493)
                      ||.|+++++||||++++|+|+++|++++.++++|+|+|+++++||++++.+++++.++|++++++|+++++||...+..|
T Consensus       235 GQ~C~a~~rv~v~~~i~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g  314 (429)
T cd07100         235 GQSCIAAKRFIVHEDVYDEFLEKFVEAMAALKVGDPMDEDTDLGPLARKDLRDELHEQVEEAVAAGATLLLGGKRPDGPG  314 (429)
T ss_pred             CCCCCCCeEEEEcHHHHHHHHHHHHHHHHhccCCCCccCCCCccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997654468


Q ss_pred             ceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC
Q 011130          371 YYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV  450 (493)
Q Consensus       371 ~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~  450 (493)
                      +|++|||+.+++++|++++||+||||++|++|+|.||||+++|+++|||+++|||+|.+.++++++++++|+||||++..
T Consensus       315 ~~~~Ptv~~~~~~~~~~~~eE~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~v~iN~~~~  394 (429)
T cd07100         315 AFYPPTVLTDVTPGMPAYDEELFGPVAAVIKVKDEEEAIALANDSPFGLGGSVFTTDLERAERVARRLEAGMVFINGMVK  394 (429)
T ss_pred             eEEcCEEeecCCCCCHHHhCCCCCCeEEEeeeCCHHHHHHHHhCCCcCceEEEECCCHHHHHHHHHhCCcCeEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          451 FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       451 ~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      ..+.+||||+|+||+|+++|++++++||+.|+++
T Consensus       395 ~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  428 (429)
T cd07100         395 SDPRLPFGGVKRSGYGRELGRFGIREFVNIKTVW  428 (429)
T ss_pred             CCCCCCcCCccccccCCcchHHHHHHhcceeEEe
Confidence            7788999999999999999999999999999985


No 91 
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=100.00  E-value=6.6e-76  Score=617.71  Aligned_cols=393  Identities=40%  Similarity=0.634  Sum_probs=368.1

Q ss_pred             eeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhh
Q 011130           83 FPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS  162 (493)
Q Consensus        83 ~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a  162 (493)
                      |+++||+||+++++++.++.+++++++++|++|++  .|+++|..+|.++|.++++.|+++.++|++++++|+|||..++
T Consensus         1 ~~~~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a   78 (453)
T cd07149           1 IEVISPYDGEVIGRVPVASEEDVEKAIAAAKEGAK--EMKSLPAYERAEILERAAQLLEERREEFARTIALEAGKPIKDA   78 (453)
T ss_pred             CCccCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCHHHH
Confidence            46889999999999999999999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             hhccHHHHHHHHHHHHHhhHHhcCccCCCC-----CCceeEEEeeeeeeE------------------------------
Q 011130          163 AQTEVPMTTRLFRYYAGWADKIQGLTAPAD-----GPYHVQTLHEPIGVA------------------------------  207 (493)
Q Consensus       163 ~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~PlGVv------------------------------  207 (493)
                      .. |+..+++.++++++.+++..+...+.+     .+...+..++|+|||                              
T Consensus        79 ~~-ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~N~P~~~~~~~~~~ALaaGN~VI~K  157 (453)
T cd07149          79 RK-EVDRAIETLRLSAEEAKRLAGETIPFDASPGGEGRIGFTIREPIGVVAAITPFNFPLNLVAHKVGPAIAAGNAVVLK  157 (453)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHhcCccccccccCCCCCeeEEEEeecceEEEEECCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence            85 999999999999988777655433321     233457889999998                              


Q ss_pred             -----------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCC
Q 011130          208 -----------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGK  264 (493)
Q Consensus       208 -----------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~  264 (493)
                                             |++|+|++.+.+++..|+.||++|+|+||||+++|+.|++.++   ++|+++|+|||
T Consensus       158 ps~~~p~~~~~l~~~l~~ag~P~gvv~~v~g~~~~~~~~l~~~~~v~~V~ftGs~~~g~~i~~~a~---~~~~~lelGGk  234 (453)
T cd07149         158 PASQTPLSALKLAELLLEAGLPKGALNVVTGSGETVGDALVTDPRVRMISFTGSPAVGEAIARKAG---LKKVTLELGSN  234 (453)
T ss_pred             CCCcchHHHHHHHHHHHHcCcCccceEEeecCchHHHHHHhcCCCCCEEEEECCHHHHHHHHHHcC---CCceeeecCCC
Confidence                                   8999999876777899999999999999999999999998763   68999999999


Q ss_pred             CceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHH
Q 011130          265 SPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEK  344 (493)
Q Consensus       265 ~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~  344 (493)
                      ||+||++|+|++.|++.|++++|.++||.|+++++||||++++|+|+++|++++.++++|+|.++++.+||++++.++++
T Consensus       235 ~p~iV~~dadl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~L~~~~~~~~~g~p~~~~~~~gpl~~~~~~~~  314 (453)
T cd07149         235 AAVIVDADADLEKAVERCVSGAFANAGQVCISVQRIFVHEDIYDEFLERFVAATKKLVVGDPLDEDTDVGPMISEAEAER  314 (453)
T ss_pred             ceEEECCCCCHHHHHHHHHHHHHHhcCCCCCCCceEEEcHhHHHHHHHHHHHHHHhCCcCCCCCCCCccccccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEe
Q 011130          345 ILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVF  424 (493)
Q Consensus       345 ~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~  424 (493)
                      +.++|++++.+|+++++||..   .|+|++|||+.+++++|.++++|+||||++|++|+|++|||+++|+++|||+++||
T Consensus       315 ~~~~i~~a~~~ga~v~~gg~~---~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gLt~~v~  391 (453)
T cd07149         315 IEEWVEEAVEGGARLLTGGKR---DGAILEPTVLTDVPPDMKVVCEEVFAPVVSLNPFDTLDEAIAMANDSPYGLQAGVF  391 (453)
T ss_pred             HHHHHHHHHHCCCEEEeCCCC---CCeEEcCEEEeCCCCCCHHHhCCCCCceEEEEEeCCHHHHHHHHhCCCcCceEEEE
Confidence            999999999999999999865   47899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhcceeEEEECCcCCC-CCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          425 THNLDTANTLMRALRVGSVWINCFDVF-DAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       425 t~d~~~~~~~~~~l~~g~V~VN~~~~~-~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      |+|.+.+.++++++++|+||||+++.. .+.+||||+|+||+|+++|.+++++|++.|+|+
T Consensus       392 t~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~~pfGG~~~SG~G~~~g~~~~~~~~~~k~~~  452 (453)
T cd07149         392 TNDLQKALKAARELEVGGVMINDSSTFRVDHMPYGGVKESGTGREGPRYAIEEMTEIKLVC  452 (453)
T ss_pred             cCCHHHHHHHHHHcCcCeEEECCCCCCCCCCCCcCCccccccCCCChHHHHHHhhceeEEe
Confidence            999999999999999999999987654 467999999999999999999999999999885


No 92 
>PLN02203 aldehyde dehydrogenase
Probab=100.00  E-value=5.8e-75  Score=607.68  Aligned_cols=380  Identities=27%  Similarity=0.380  Sum_probs=351.3

Q ss_pred             cCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHH
Q 011130           99 EGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYA  178 (493)
Q Consensus        99 ~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a  178 (493)
                      ++..+|+++++++|++||+  .|+.+|..+|.++|++++++|++++++|++++++|+|||+.++...|+..+++.++|++
T Consensus         2 ~~~~~~v~~av~~a~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~~   79 (484)
T PLN02203          2 EAPGETLEGSVAELRETYE--SGRTRSLEWRKSQLKGLLRLLKDNEEAIFKALHQDLGKHRVEAYRDEVGVLTKSANLAL   79 (484)
T ss_pred             CCCHHHHHHHHHHHHHHHH--hcCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999  99999999999999999999999999999999999999999986569999999999999


Q ss_pred             HhhHHhcCcc---CCC-CCCceeEEEeeeeeeE-----------------------------------------------
Q 011130          179 GWADKIQGLT---APA-DGPYHVQTLHEPIGVA-----------------------------------------------  207 (493)
Q Consensus       179 ~~~~~~~~~~---~~~-~~~~~~~~~~~PlGVv-----------------------------------------------  207 (493)
                      +..++..+..   .+. ..+...++.++|+|||                                               
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~reP~GVv~~I~pwN~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~~~  159 (484)
T PLN02203         80 SNLKKWMAPKKAKLPLVAFPATAEVVPEPLGVVLIFSSWNFPIGLSLEPLIGAIAAGNAVVLKPSELAPATSAFLAANIP  159 (484)
T ss_pred             HHHHHHhccccccCCcccCCceeEEEEecccEEEEEcCCcchHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHH
Confidence            8777665431   121 1234668899999999                                               


Q ss_pred             -----eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEcc---CCCHHHHH
Q 011130          208 -----GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCE---DADVDKAA  279 (493)
Q Consensus       208 -----gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~---daDl~~aa  279 (493)
                           |++|+|++ +.++++.|+.|+ +|.|+||||+++|+.|++.+++ +++|+++|+|||||+||++   |||++.|+
T Consensus       160 ~~lP~gvv~vv~g-~~~~~~~l~~~~-vd~v~fTGS~~~G~~v~~~aa~-~l~~v~lElGGknp~iV~~d~~daDl~~aa  236 (484)
T PLN02203        160 KYLDSKAVKVIEG-GPAVGEQLLQHK-WDKIFFTGSPRVGRIIMTAAAK-HLTPVALELGGKCPCIVDSLSSSRDTKVAV  236 (484)
T ss_pred             HhCCcCEEEEEeC-CHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHh-cCCCEEEEecCCCeEEEccCCCCCCHHHHH
Confidence                 99999998 778899999995 9999999999999999999988 8999999999999999997   69999999


Q ss_pred             HHHHHHHHh-hcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCE
Q 011130          280 ELAHYALFF-NQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAK  358 (493)
Q Consensus       280 ~~i~~~~~~-~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~  358 (493)
                      +.+++++|. |+||.|++++|+|||++++|+|+++|++++.++++|||.++ +++||++++.+++++.++|+++++. ++
T Consensus       237 ~~i~~~~f~~~aGQ~C~a~~rv~V~~~i~d~f~~~L~~~~~~~~~G~p~~~-~~~Gpli~~~~~~~v~~~i~~a~~~-~~  314 (484)
T PLN02203        237 NRIVGGKWGSCAGQACIAIDYVLVEERFAPILIELLKSTIKKFFGENPRES-KSMARILNKKHFQRLSNLLKDPRVA-AS  314 (484)
T ss_pred             HHHHHHhcccCCCCccccCCeEEEcHHHHHHHHHHHHHHHHHhcCCCCCcC-CCcCCCCCHHHHHHHHHHHHHHHhC-Ce
Confidence            999999996 89999999999999999999999999999999999999986 6899999999999999999999876 78


Q ss_pred             EEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc
Q 011130          359 LETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL  438 (493)
Q Consensus       359 v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l  438 (493)
                      +++||.. +..|+|++|||+.+++++|++++||+||||++|++|+|++|||+++|+++|||+++|||+|.+.+.++++++
T Consensus       315 ~~~gg~~-~~~g~~i~PTvl~~v~~d~~i~~eE~FGPVl~v~~~~~~~eai~~aN~~~~gL~a~vft~d~~~a~~~~~~l  393 (484)
T PLN02203        315 IVHGGSI-DEKKLFIEPTILLNPPLDSDIMTEEIFGPLLPIITVKKIEDSIAFINSKPKPLAIYAFTNNEKLKRRILSET  393 (484)
T ss_pred             EEeCCCc-CCCCCEEeeEEEecCCCCCHHHhcCccCCeEEEEeeCCHHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhC
Confidence            9999865 346899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEECCcCC--CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          439 RVGSVWINCFDV--FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       439 ~~g~V~VN~~~~--~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      ++|.|+||++..  ..+.+||||+|+||+|+++|.+++++|++.|+|++.
T Consensus       394 ~~G~V~IN~~~~~~~~~~~PfGG~k~SG~Gr~~g~~~l~~ft~~k~v~~~  443 (484)
T PLN02203        394 SSGSVTFNDAIIQYACDSLPFGGVGESGFGRYHGKYSFDTFSHEKAVLRR  443 (484)
T ss_pred             CcceEEECCcccccCCCCCCCCCcCcccCCccccHHHHHHhcceeEEEEc
Confidence            999999998743  346799999999999999999999999999999877


No 93 
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=100.00  E-value=2e-74  Score=644.64  Aligned_cols=410  Identities=32%  Similarity=0.473  Sum_probs=376.4

Q ss_pred             ccceeCCEeeeCCCCCeeeeecCCCCC-eEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhH
Q 011130           66 TQLLINGQFVDSASGKTFPTLDPRTGD-VITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHN  144 (493)
Q Consensus        66 ~~~~I~G~~~~~~~~~~~~v~~P~tg~-~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~  144 (493)
                      .+.+|||      ++.+++++||+|++ +|++++.++.+++++||++|++||+  .|+++|..+|.++|++++++|++++
T Consensus       553 ~~~~i~g------~~~~~~v~nP~~~~~~vg~v~~a~~~~v~~Ai~aA~~A~~--~W~~~~~~~Ra~iL~kaAdll~~~~  624 (1038)
T PRK11904        553 AGPIING------EGEARPVVSPADRRRVVGEVAFADAEQVEQALAAARAAFP--AWSRTPVEERAAILERAADLLEANR  624 (1038)
T ss_pred             ecceEcC------CCCeEEEECCCCCCeeEEEEeCCCHHHHHHHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHhH
Confidence            3457788      45779999999988 9999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCcc--CCCCCCceeEEEeeeeeeE---------------
Q 011130          145 DEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLT--APADGPYHVQTLHEPIGVA---------------  207 (493)
Q Consensus       145 ~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~--~~~~~~~~~~~~~~PlGVv---------------  207 (493)
                      ++|+.++++|+|||+.++.. |+..++++|+||+..+++..+..  .+...+...+..++|+|||               
T Consensus       625 ~eL~~l~~~E~GK~~~~a~~-EV~eaid~lr~ya~~a~~~~~~~~~l~g~~ge~n~~~~~P~GVv~~IsPwNfPlai~~~  703 (1038)
T PRK11904        625 AELIALCVREAGKTLQDAIA-EVREAVDFCRYYAAQARRLFGAPEKLPGPTGESNELRLHGRGVFVCISPWNFPLAIFLG  703 (1038)
T ss_pred             HHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCcccCCCCCceeEEEEecceEEEEECCCccHHHHHHH
Confidence            99999999999999999975 99999999999999988775432  2333345667889999998               


Q ss_pred             --------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHH
Q 011130          208 --------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLA  249 (493)
Q Consensus       208 --------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a  249 (493)
                                                            |++|+|+|.+.++++.|+.||+|+.|+||||+++|+.|.+.+
T Consensus       704 ~i~aALaaGNtVIlKPse~tpl~a~~l~~ll~eAGlP~gvl~lv~G~g~~vg~~Lv~~p~v~~V~FTGS~~~g~~I~~~~  783 (1038)
T PRK11904        704 QVAAALAAGNTVIAKPAEQTPLIAAEAVKLLHEAGIPKDVLQLLPGDGATVGAALTADPRIAGVAFTGSTETARIINRTL  783 (1038)
T ss_pred             HHHHHHHcCCEEEeeCCCcCHHHHHHHHHHHHHhCcCcceEEEeeCCchHHHHHHhcCCCcCeEEEECCHHHHHHHHHHH
Confidence                                                  999999998888999999999999999999999999999988


Q ss_pred             hhc--CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCC
Q 011130          250 AKS--NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPF  327 (493)
Q Consensus       250 ~~~--~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~  327 (493)
                      +..  .++|+++|+|||||+||++|||+|.|++.+++|+|.++||+|+++++||||++++|+|+++|++.++++++|+|.
T Consensus       784 A~~~g~~~pvi~ElGGkNa~IV~~dAdld~Av~~iv~saF~~aGQ~CsA~~rl~V~~si~d~fl~~L~~~~~~l~vGdp~  863 (1038)
T PRK11904        784 AARDGPIVPLIAETGGQNAMIVDSTALPEQVVDDVVTSAFRSAGQRCSALRVLFVQEDIADRVIEMLKGAMAELKVGDPR  863 (1038)
T ss_pred             hhccCCCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHHhCCCCccccCcEEEEeHHHHHHHHHHHHHHHHhccCCCcc
Confidence            752  267999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC--CCCceeeceEEecCCCCccccccccccceEEEEEeC--
Q 011130          328 KGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG--AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK--  403 (493)
Q Consensus       328 ~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~--~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~--  403 (493)
                      +.++++||+|++.+++++.++|+++.+ |+++++||..++  ..|+|+.|||+..  +++.++++|+||||++|++|+  
T Consensus       864 d~~t~~GPvI~~~a~~~l~~~I~~a~~-ga~vl~gg~~~~~~~~G~fv~PTvi~~--~~~~~~~eEiFGPVL~V~~~~~~  940 (1038)
T PRK11904        864 LLSTDVGPVIDAEAKANLDAHIERMKR-EARLLAQLPLPAGTENGHFVAPTAFEI--DSISQLEREVFGPILHVIRYKAS  940 (1038)
T ss_pred             cccCCccCCCCHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCCceEEeeEEEcc--CCcHHhCCCCcCcEEEEEEeCCC
Confidence            999999999999999999999999866 899999997643  3599999999963  577889999999999999998  


Q ss_pred             CHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC--CCCCCccCCCCCCCC-CcchHHHHHhhhhc
Q 011130          404 DLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF--DAAIPFGGYKQSGQG-REKGSYSLSNYLQV  480 (493)
Q Consensus       404 ~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~--~~~~pfGG~~~SG~G-~~~g~~~l~~~~~~  480 (493)
                      +++|+|+++|+++|||+++|||+|.+.+.++++++++|+||||+..+.  ...+||||+|.||+| +.+|+++|++|++.
T Consensus       941 ~ldeaI~~iN~t~yGLt~~IfS~d~~~~~~~~~~l~aG~vyIN~~~~ga~vg~qPFGG~~~SG~G~kaGG~~~L~~f~~~ 1020 (1038)
T PRK11904        941 DLDKVIDAINATGYGLTLGIHSRIEETADRIADRVRVGNVYVNRNQIGAVVGVQPFGGQGLSGTGPKAGGPHYLLRFATE 1020 (1038)
T ss_pred             CHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHhCCEEEEEEeCCCccCCCCCCCCCCCCCCCCCCccchHHHHHHHhce
Confidence            699999999999999999999999999999999999999999986553  345799999999999 78999999999999


Q ss_pred             eEEEEeC
Q 011130          481 KAVVTAL  487 (493)
Q Consensus       481 k~v~~~~  487 (493)
                      |+|+++.
T Consensus      1021 ktv~~~~ 1027 (1038)
T PRK11904       1021 KTVTVNT 1027 (1038)
T ss_pred             EEEEEcc
Confidence            9998763


No 94 
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=100.00  E-value=9.6e-75  Score=602.06  Aligned_cols=375  Identities=29%  Similarity=0.384  Sum_probs=346.8

Q ss_pred             CCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHH
Q 011130          100 GEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAG  179 (493)
Q Consensus       100 ~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~  179 (493)
                      .+.+|+++|+++|++||+  .|+.++..+|.++|+++++.|++++++|++++++|+|||+.++...|+..+++.++|++.
T Consensus         2 ~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~e~~~~ev~~~~~~~~~~a~   79 (436)
T cd07135           2 TPLDEIDSIHSRLRATFR--SGKTKDLEYRLWQLKQLYWAVKDNEEAIVEALKKDLGRPPFETLLTEVSGVKNDILHMLK   79 (436)
T ss_pred             CCHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHH
Confidence            578999999999999999  999999999999999999999999999999999999999999875599999999999999


Q ss_pred             hhHHhcCccCCCC-----CCceeEEEeeeeeeE-----------------------------------------------
Q 011130          180 WADKIQGLTAPAD-----GPYHVQTLHEPIGVA-----------------------------------------------  207 (493)
Q Consensus       180 ~~~~~~~~~~~~~-----~~~~~~~~~~PlGVv-----------------------------------------------  207 (493)
                      .++++.....+..     .....++.++|+|||                                               
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~~~l~~l~~  159 (436)
T cd07135          80 NLKKWAKDEKVKDGPLAFMFGKPRIRKEPLGVVLIIGPWNYPVLLALSPLVGAIAAGCTVVLKPSELTPHTAALLAELVP  159 (436)
T ss_pred             HHHHhhCCcccCCcccccCCCceEEEeccCcEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCccChHHHHHHHHHHH
Confidence            8877543322211     133567899999999                                               


Q ss_pred             -----eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHH
Q 011130          208 -----GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELA  282 (493)
Q Consensus       208 -----gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i  282 (493)
                           |++|+|++.+.+++ .|+.|| +|.|+||||+.+|+.|++.++. +++|+++|+|||||+||++|||++.|++.+
T Consensus       160 ~~lP~g~v~vv~g~~~~~~-~l~~~~-vd~v~ftGs~~~g~~i~~~aa~-~~~~~~lelgG~~~~iV~~dADl~~aa~~i  236 (436)
T cd07135         160 KYLDPDAFQVVQGGVPETT-ALLEQK-FDKIFYTGSGRVGRIIAEAAAK-HLTPVTLELGGKSPVIVTKNADLELAAKRI  236 (436)
T ss_pred             HhCCcCEEEEEcCCchhHH-HHHhCC-CCEEEEECCcHHHHHHHHHHHh-cCCCeEEEccCCCcEEECCCCCHHHHHHHH
Confidence                 99999998666654 588899 9999999999999999999887 899999999999999999999999999999


Q ss_pred             HHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeC
Q 011130          283 HYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETG  362 (493)
Q Consensus       283 ~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~g  362 (493)
                      ++++|.++||.|+++++||||++++|+|+++|++++.++++|+| ++++.+||+++..+++++.++|+++   |+++++|
T Consensus       237 ~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p-~~~~~~gpli~~~~~~~i~~~v~~a---g~~v~~g  312 (436)
T cd07135         237 LWGKFGNAGQICVAPDYVLVDPSVYDEFVEELKKVLDEFYPGGA-NASPDYTRIVNPRHFNRLKSLLDTT---KGKVVIG  312 (436)
T ss_pred             HHHHhccCCceecCCCEEeccHHHHHHHHHHHHHHHHHhcCCCC-CCCCCcCCCCCHHHHHHHHHHHHhc---CCeEEEC
Confidence            99999999999999999999999999999999999999999999 9999999999999999999999986   8899999


Q ss_pred             CcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeE
Q 011130          363 GERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGS  442 (493)
Q Consensus       363 g~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~  442 (493)
                      |... ..|+|++|||+.+++++|+++++|+||||++|++|+|+||||+++|+++|||+++|||+|.+.+.++++++++|+
T Consensus       313 g~~~-~~g~~~~Ptvl~~~~~~~~~~~~E~FgPvl~v~~~~~~deai~~an~~~~gL~~~v~t~d~~~a~~~~~~l~~g~  391 (436)
T cd07135         313 GEMD-EATRFIPPTIVSDVSWDDSLMSEELFGPVLPIIKVDDLDEAIKVINSRDTPLALYIFTDDKSEIDHILTRTRSGG  391 (436)
T ss_pred             CCcC-CCCCEEccEEEecCCCccHHHhccccCCceEEEecCCHHHHHHHHhCCCCCceEEEEcCCHHHHHHHHhcCCcCe
Confidence            9754 368999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCcCC--CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          443 VWINCFDV--FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       443 V~VN~~~~--~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      |+||+.+.  ..+.+||||+|+||+|+++|.+++++|++.|+|.
T Consensus       392 v~iN~~~~~~~~~~~PfGG~k~SG~G~~~g~~~l~~~t~~k~i~  435 (436)
T cd07135         392 VVINDTLIHVGVDNAPFGGVGDSGYGAYHGKYGFDTFTHERTVV  435 (436)
T ss_pred             EEECCccccccCCCCCcCCcCcccCCccccHhHHHHhccccccc
Confidence            99998654  3578999999999999999999999999999873


No 95 
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=100.00  E-value=4.2e-74  Score=597.39  Aligned_cols=374  Identities=32%  Similarity=0.471  Sum_probs=345.5

Q ss_pred             HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHH
Q 011130          104 DVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADK  183 (493)
Q Consensus       104 ~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~  183 (493)
                      |++++|++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||+.++.. |+..++..+++++....+
T Consensus         1 ~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~-ev~~~~~~~~~~~~~~~~   77 (431)
T cd07095           1 QVDAAVAAARAAFP--GWAALSLEERAAILRRFAELLKANKEELARLISRETGKPLWEAQT-EVAAMAGKIDISIKAYHE   77 (431)
T ss_pred             CHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            57899999999999  999999999999999999999999999999999999999999975 999999999999988777


Q ss_pred             hcCccCCCCCCceeEEEeeeeeeE-----------------------------------------------------eEE
Q 011130          184 IQGLTAPADGPYHVQTLHEPIGVA-----------------------------------------------------GVL  210 (493)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~PlGVv-----------------------------------------------------gvv  210 (493)
                      ..+...+...+...++.++|+|||                                                     |++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VI~Kps~~~~~~~~~l~~~~~~ag~P~g~~  157 (431)
T cd07095          78 RTGERATPMAQGRAVLRHRPHGVMAVFGPFNFPGHLPNGHIVPALLAGNTVVFKPSELTPAVAELMVELWEEAGLPPGVL  157 (431)
T ss_pred             hcCCcccCCCCceEEEEEecceEEEEECCCchHHHHHHHHHHHHHhcCCEEEeeCCCCCcHHHHHHHHHHHHhCcChhHh
Confidence            665443323345678899999999                                                     899


Q ss_pred             EeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhc
Q 011130          211 NIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQ  290 (493)
Q Consensus       211 ~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~  290 (493)
                      |+|++ +.+.++.|+.|+++|.|+||||+++|+.|++.++...++++++|+|||||+||++|||++.|++.+++++|.|+
T Consensus       158 ~~v~g-~~~~~~~l~~~~~v~~v~ftGs~~~g~~i~~~~a~~~~~~~~lElgG~~~~iV~~daDl~~aa~~i~~~~~~~~  236 (431)
T cd07095         158 NLVQG-GRETGEALAAHEGIDGLLFTGSAATGLLLHRQFAGRPGKILALEMGGNNPLVVWDVADIDAAAYLIVQSAFLTA  236 (431)
T ss_pred             eEEeC-cHHHHHHHhcCCCCCEEEEECcHHHHHHHHHHhhccCCCcEEEECCCCCeEEECCCCCHHHHHHHHHHHHHHhC
Confidence            99998 45678999999999999999999999999998775357999999999999999999999999999999999999


Q ss_pred             CCcccCCCeeEecch-hHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCC
Q 011130          291 GQCCCAGSRTFVHES-VYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAK  369 (493)
Q Consensus       291 GQ~C~a~~~v~V~~~-i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~  369 (493)
                      ||.|+++++||||++ ++|+|+++|++++.++++|+|.++++.+||+++..+++++.+++++++++|+++++||...+..
T Consensus       237 GQ~C~a~~rv~V~~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~i~~~v~~a~~~ga~~l~gg~~~~~~  316 (431)
T cd07095         237 GQRCTCARRLIVPDGAVGDAFLERLVEAAKRLRIGAPDAEPPFMGPLIIAAAAARYLLAQQDLLALGGEPLLAMERLVAG  316 (431)
T ss_pred             CCCCCCCeEEEEcCcchHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCEEEeCCCcCCCC
Confidence            999999999999999 9999999999999999999999999999999999999999999999999999999999765557


Q ss_pred             CceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcC
Q 011130          370 GYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFD  449 (493)
Q Consensus       370 g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~  449 (493)
                      |+|++|||+ +++++|.+++||+||||++|++|+|++|||+++|+++|||+++|||+|.+.+.++++++++|+||||+..
T Consensus       317 g~~~~Ptv~-~v~~~~~i~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gL~a~v~s~d~~~a~~~~~~l~~G~v~iN~~~  395 (431)
T cd07095         317 TAFLSPGII-DVTDAADVPDEEIFGPLLQVYRYDDFDEAIALANATRFGLSAGLLSDDEALFERFLARIRAGIVNWNRPT  395 (431)
T ss_pred             CeEEcCEEE-ecCCCChHHhCCCcCCeEEEEeeCCHHHHHHHHhCCCCCCeEEEEcCCHHHHHHHHHhCCcceEEECCCC
Confidence            999999999 6888999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             C-CCCCCCccCCCCCCCCCcchHHHHHhhhhceEE
Q 011130          450 V-FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV  483 (493)
Q Consensus       450 ~-~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v  483 (493)
                      . ..+.+||||+|+||+|+++|.++++ |++.|++
T Consensus       396 ~~~~~~~PfGG~k~SG~G~~~g~~~~~-~~~~~~~  429 (431)
T cd07095         396 TGASSTAPFGGVGLSGNHRPSAYYAAD-YCAYPVA  429 (431)
T ss_pred             CCCCCCCCCCCcccccCCCCChHHHHH-HHhhhhc
Confidence            4 3466899999999999999999999 5555543


No 96 
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28)  involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=100.00  E-value=6e-74  Score=599.16  Aligned_cols=374  Identities=40%  Similarity=0.623  Sum_probs=353.1

Q ss_pred             HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHH
Q 011130          104 DVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADK  183 (493)
Q Consensus       104 ~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~  183 (493)
                      |++++|+.|++|++  .|+++|..+|.++|+++++.|+++.++|++++++|+|||..++.. |+..+++.+++++.+.++
T Consensus         1 ~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~-ei~~~~~~l~~~~~~~~~   77 (431)
T cd07104           1 DVDRAYAAAAAAQK--AWAATPPQERAAILRKAAEILEERRDEIADWLIRESGSTRPKAAF-EVGAAIAILREAAGLPRR   77 (431)
T ss_pred             CHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            57899999999999  999999999999999999999999999999999999999999875 999999999999988877


Q ss_pred             hcCccCCCC-CCceeEEEeeeeeeE------------------------------------------------------e
Q 011130          184 IQGLTAPAD-GPYHVQTLHEPIGVA------------------------------------------------------G  208 (493)
Q Consensus       184 ~~~~~~~~~-~~~~~~~~~~PlGVv------------------------------------------------------g  208 (493)
                      ..+...+.. .+...++.++|+|||                                                      |
T Consensus        78 ~~~~~~~~~~~g~~~~~~~~P~GVv~~i~p~N~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~~~~l~~~l~~aGlP~g  157 (431)
T cd07104          78 PEGEILPSDVPGKESMVRRVPLGVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKG  157 (431)
T ss_pred             hcCccccCCCCCceeEEEEeeeeeEEEECCCCcHHHHHHHHHHHHHHcCCeEEeeCCCCChHHHHHHHHHHHHHcCCCcc
Confidence            655544433 345668899999999                                                      8


Q ss_pred             EEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHh
Q 011130          209 VLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFF  288 (493)
Q Consensus       209 vv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~  288 (493)
                      ++|+|++.+.+++..|+.|+++++|.||||+.+|+.|++.+++ +++|+++|+|||||+||++|||++.|++.|++++|+
T Consensus       158 vv~~v~g~~~~~~~~L~~~~~i~~V~ftGs~~~g~~v~~~aa~-~~~~~~lelgG~~~~iV~~dadl~~aa~~i~~~~~~  236 (431)
T cd07104         158 VLNVVPGGGSEIGDALVEHPRVRMISFTGSTAVGRHIGELAGR-HLKKVALELGGNNPLIVLDDADLDLAVSAAAFGAFL  236 (431)
T ss_pred             cEEEeeCCchhHHHHHhcCCCCCEEEEECCHHHHHHHHHHHhh-cCCcEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHh
Confidence            9999998777788999999999999999999999999999988 899999999999999999999999999999999999


Q ss_pred             hcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCC
Q 011130          289 NQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGA  368 (493)
Q Consensus       289 ~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~  368 (493)
                      |+||.|+++++||||++++|+|+++|++++.++++|+|.++++.+||++++.+++++.+++++++.+|+++++||..   
T Consensus       237 ~~GQ~C~a~~~v~v~~~i~~~f~~~l~~~~~~~~~g~~~~~~~~~gp~i~~~~~~~i~~~i~~a~~~G~~~~~gg~~---  313 (431)
T cd07104         237 HQGQICMAAGRILVHESVYDEFVEKLVAKAKALPVGDPRDPDTVIGPLINERQVDRVHAIVEDAVAAGARLLTGGTY---  313 (431)
T ss_pred             cCCCCcccCcEEEEcHHHHHHHHHHHHHHHHhcCcCCCCCCCCccCcccCHHHHHHHHHHHHHHHHCCCEEEeCCCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999864   


Q ss_pred             CCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCc
Q 011130          369 KGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCF  448 (493)
Q Consensus       369 ~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~  448 (493)
                      .|+|++|||+.++++++++++||+||||++|++|+|+||||+++|+++|||+++|||+|.+.++++++++++|+|+||++
T Consensus       314 ~g~~~~Ptvl~~~~~~~~~~~eE~fgPvl~v~~~~~~~eai~~~n~~~~gl~~~i~t~d~~~~~~~~~~l~~g~v~iN~~  393 (431)
T cd07104         314 EGLFYQPTVLSDVTPDMPIFREEIFGPVAPVIPFDDDEEAVELANDTEYGLSAAVFTRDLERAMAFAERLETGMVHINDQ  393 (431)
T ss_pred             CCceECCEEeecCCCCChhhhCcCcCCeEEEEEECCHHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhcCcCeEEECCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCC-CCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          449 DVFD-AAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       449 ~~~~-~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +... +.+||||+|+||+|+++|++++++|++.|+++
T Consensus       394 ~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~~~  430 (431)
T cd07104         394 TVNDEPHVPFGGVKASGGGRFGGPASLEEFTEWQWIT  430 (431)
T ss_pred             CCCCCCCCCCCCcccccCCccchHHHHHHhhceeEEe
Confidence            6554 78999999999999999999999999999985


No 97 
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=100.00  E-value=1.1e-73  Score=600.74  Aligned_cols=379  Identities=28%  Similarity=0.419  Sum_probs=347.8

Q ss_pred             cCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHH
Q 011130           99 EGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYA  178 (493)
Q Consensus        99 ~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a  178 (493)
                      ..+.+|+++++++|++||+  .|+.++..+|.++|++++++|++|.++|++++++|+|||..++...|+..++..+++++
T Consensus         3 ~~~~~~i~~av~~a~~a~~--~~~~~~~~~R~~~L~~l~~~l~~~~~~i~~a~~~d~Gk~~~ea~~~Ev~~~~~~i~~~~   80 (493)
T PTZ00381          3 PDNPEIIPPIVKKLKESFL--TGKTRPLEFRKQQLRNLLRMLEENKQEFSEAVHKDLGRHPFETKMTEVLLTVAEIEHLL   80 (493)
T ss_pred             CCCHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999  99999999999999999999999999999999999999999987679999999999998


Q ss_pred             HhhHHhcCcc-CC---CCCCceeEEEeeeeeeE-----------------------------------------------
Q 011130          179 GWADKIQGLT-AP---ADGPYHVQTLHEPIGVA-----------------------------------------------  207 (493)
Q Consensus       179 ~~~~~~~~~~-~~---~~~~~~~~~~~~PlGVv-----------------------------------------------  207 (493)
                      +..++..... ..   ...+...++.++|+|||                                               
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~PlGVV~iI~PwN~Pl~l~~~~l~~ALaaGN~VIlKPse~tp~t~~~l~~ll~  160 (493)
T PTZ00381         81 KHLDEYLKPEKVDTVGVFGPGKSYIIPEPLGVVLVIGAWNYPLNLTLIPLAGAIAAGNTVVLKPSELSPHTSKLMAKLLT  160 (493)
T ss_pred             HHHHHHhCCcccCCccccCCCceEEEEecCcEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccCHHHHHHHHHHHH
Confidence            8766653322 11   11234568899999999                                               


Q ss_pred             -----eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHH
Q 011130          208 -----GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELA  282 (493)
Q Consensus       208 -----gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i  282 (493)
                           |++++|+| +.+.+..|+.|+ +|+|+||||+.+|+.|++.+++ +++|+++|||||||+||++|||++.|++.|
T Consensus       161 ~~lp~~~v~vv~g-~~~~~~~l~~~~-~d~i~FTGS~~vG~~V~~~aa~-~l~pv~lElGGk~p~iV~~dAdl~~Aa~~i  237 (493)
T PTZ00381        161 KYLDPSYVRVIEG-GVEVTTELLKEP-FDHIFFTGSPRVGKLVMQAAAE-NLTPCTLELGGKSPVIVDKSCNLKVAARRI  237 (493)
T ss_pred             HhCCcCEEEEecC-CHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHh-cCCcEEEEcCCCCceEEcCCCCHHHHHHHH
Confidence                 99999998 677888898887 9999999999999999999988 899999999999999999999999999999


Q ss_pred             HHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeC
Q 011130          283 HYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETG  362 (493)
Q Consensus       283 ~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~g  362 (493)
                      ++++|.|+||.|+++++||||++++|+|+++|++.+.++. |+|.++++++||+++..+++++.++|+   ++|+++++|
T Consensus       238 ~~g~~~naGQ~C~A~~~vlV~~~i~d~f~~~l~~~~~~~~-g~~~~~~~~~gpli~~~~~~ri~~~i~---~~ga~~~~g  313 (493)
T PTZ00381        238 AWGKFLNAGQTCVAPDYVLVHRSIKDKFIEALKEAIKEFF-GEDPKKSEDYSRIVNEFHTKRLAELIK---DHGGKVVYG  313 (493)
T ss_pred             HHHHHhhcCCcCCCCCEEEEeHHHHHHHHHHHHHHHHHHh-CCCCccCCCcCCCCCHHHHHHHHHHHH---hCCCcEEEC
Confidence            9999999999999999999999999999999999999985 777788999999999999999999996   468999999


Q ss_pred             CcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeE
Q 011130          363 GERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGS  442 (493)
Q Consensus       363 g~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~  442 (493)
                      |.. +..++|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.+.++++++++++|.
T Consensus       314 G~~-~~~~~~i~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~~n~~~~gLa~~vft~d~~~~~~~~~~~~sG~  392 (493)
T PTZ00381        314 GEV-DIENKYVAPTIIVNPDLDSPLMQEEIFGPILPILTYENIDEVLEFINSRPKPLALYYFGEDKRHKELVLENTSSGA  392 (493)
T ss_pred             CCc-CCCCCeEeeEEEecCCCCChHHhccccCCeEEEEeeCCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCcce
Confidence            975 3467899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCcC--CCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeC
Q 011130          443 VWINCFD--VFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       443 V~VN~~~--~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      |+||+..  ...+.+||||+|+||+|+++|.+++++||+.|+|+...
T Consensus       393 v~IN~~~~~~~~~~~PFGG~g~SG~G~~~G~~g~~~fs~~k~v~~~~  439 (493)
T PTZ00381        393 VVINDCVFHLLNPNLPFGGVGNSGMGAYHGKYGFDTFSHPKPVLNKS  439 (493)
T ss_pred             EEECCccccccCCCCCCCCcCcccccccchHHHHHhccceeEEEEcc
Confidence            9999864  34578999999999999999999999999999998774


No 98 
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=100.00  E-value=6.8e-74  Score=590.02  Aligned_cols=353  Identities=33%  Similarity=0.567  Sum_probs=332.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCC-CCceeEEEeeeeeeE----
Q 011130          133 ILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD-GPYHVQTLHEPIGVA----  207 (493)
Q Consensus       133 L~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~PlGVv----  207 (493)
                      |++++++|++|+++|++++++|+|||+.++.. |+..+++.++|++.|++...+...+.. .+...++.++|+|||    
T Consensus         1 L~~~a~~l~~~~~el~~~~~~e~Gk~~~ea~~-Ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~   79 (409)
T PRK10090          1 LRKIAAGIRERASEISALIVEEGGKIQQLAEV-EVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGIL   79 (409)
T ss_pred             CHHHHHHHHHCHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccCCCCCCceeEEEEecccEEEEEC
Confidence            57899999999999999999999999999985 999999999999999988766543322 234578899999999    


Q ss_pred             -------------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecC
Q 011130          208 -------------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGS  238 (493)
Q Consensus       208 -------------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs  238 (493)
                                                                       |++|+|++.+.++++.|+.|+++|+|+||||
T Consensus        80 p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~l~~~~~v~~V~ftGs  159 (409)
T PRK10090         80 PWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGVFNLVLGRGETVGQELAGNPKVAMVSMTGS  159 (409)
T ss_pred             CCchHHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHcCCCcccEEEEeCCChhHHHHHhcCCCcCEEEEECC
Confidence                                                             9999999977788999999999999999999


Q ss_pred             cHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHH
Q 011130          239 TTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALA  318 (493)
Q Consensus       239 ~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~  318 (493)
                      +.+|+.|++.++. ++||+++|+|||||+||++|||+|.|++.+++++|.|+||.|+++++||||++++|+|+++|++++
T Consensus       160 ~~~g~~v~~~aa~-~~~~~~lElgGk~p~iV~~dADld~aa~~iv~~~f~~~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~  238 (409)
T PRK10090        160 VSAGEKIMAAAAK-NITKVCLELGGKAPAIVMDDADLDLAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAM  238 (409)
T ss_pred             HHHHHHHHHHHHh-cCCeEEEECCCCCeEEEcCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEcHHHHHHHHHHHHHHH
Confidence            9999999999988 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCC-CCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceE
Q 011130          319 MKRVVGDPFKG-GIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQ  397 (493)
Q Consensus       319 ~~~~vg~p~~~-~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl  397 (493)
                      +++++|||.++ ++++||++++.+++++.++|++++++|+++++||......|+|++|||+.+++++|+++++|+||||+
T Consensus       239 ~~~~~G~p~~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eE~FgPvl  318 (409)
T PRK10090        239 QAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVALGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVL  318 (409)
T ss_pred             HhcCCCCCCCcccCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEecEEEeCCCCCCHHHhCCCCCceE
Confidence            99999999998 99999999999999999999999999999999998655568999999999999999999999999999


Q ss_pred             EEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCCcchHHHHHhh
Q 011130          398 SILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNY  477 (493)
Q Consensus       398 ~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~  477 (493)
                      +|++|+|+||||+++|+++|||+++|||+|.+.+.++++++++|.||||+.....+..||||+|+||+|+++|.+++++|
T Consensus       319 ~v~~~~~~~eai~~~n~~~~gL~~~vft~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~G~~~g~~gl~~f  398 (409)
T PRK10090        319 PVVAFDTLEEAIAMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEY  398 (409)
T ss_pred             EEEEECCHHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcccccCCccchHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999876666789999999999999999999999


Q ss_pred             hhceEEEEeC
Q 011130          478 LQVKAVVTAL  487 (493)
Q Consensus       478 ~~~k~v~~~~  487 (493)
                      ++.|++++.+
T Consensus       399 ~~~k~v~~~~  408 (409)
T PRK10090        399 LQTQVVYLQS  408 (409)
T ss_pred             cceEEEEEec
Confidence            9999997753


No 99 
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD.  In Arabidopsis thaliana, stress-regulated expression of ALDH3I1  was observed in  leaves and osmotic stress expression of  ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=100.00  E-value=1.3e-73  Score=592.99  Aligned_cols=371  Identities=30%  Similarity=0.428  Sum_probs=341.0

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcC
Q 011130          107 RAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG  186 (493)
Q Consensus       107 ~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~  186 (493)
                      +++++|++||+  .|+.++..+|.++|++++++|++++++|++++++|+|||+.++...|+..+++.++|++..+.+...
T Consensus         3 ~a~~~a~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~~~~~   80 (432)
T cd07137           3 RLVRELRETFR--SGRTRSAEWRKSQLKGLLRLVDENEDDIFAALRQDLGKPSAESFRDEVSVLVSSCKLAIKELKKWMA   80 (432)
T ss_pred             HHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            58999999999  9999999999999999999999999999999999999999988655999999999999988766443


Q ss_pred             cc---CCC-CCCceeEEEeeeeeeE----------------------------------------------------eEE
Q 011130          187 LT---APA-DGPYHVQTLHEPIGVA----------------------------------------------------GVL  210 (493)
Q Consensus       187 ~~---~~~-~~~~~~~~~~~PlGVv----------------------------------------------------gvv  210 (493)
                      ..   .+. ..+...++.++|+|||                                                    |++
T Consensus        81 ~~~~~~~~~~~~~~~~~~r~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~~~l~~~~~~~~P~gvv  160 (432)
T cd07137          81 PEKVKTPLTTFPAKAEIVSEPLGVVLVISAWNFPFLLSLEPVIGAIAAGNAVVLKPSELAPATSALLAKLIPEYLDTKAI  160 (432)
T ss_pred             CcccCCCcccCCceeEEEEecCcEEEEEcCCchHHHHHHHHHHHHHhcCCEEEEECCCcChHHHHHHHHHHHHhCCcCeE
Confidence            21   121 1233567899999999                                                    999


Q ss_pred             EeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHH-hh
Q 011130          211 NIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALF-FN  289 (493)
Q Consensus       211 ~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~-~~  289 (493)
                      |+|++ +.+.+..|+.| .+++|+||||+.+|+.|++.++. ++||+++|+|||||+||++|||++.|++.+++++| .|
T Consensus       161 ~~v~g-~~~~~~~L~~~-~i~~v~fTGs~~~g~~v~~~aa~-~~~~~~lElgG~np~iV~~dAdl~~aa~~i~~~~f~~~  237 (432)
T cd07137         161 KVIEG-GVPETTALLEQ-KWDKIFFTGSPRVGRIIMAAAAK-HLTPVTLELGGKCPVIVDSTVDLKVAVRRIAGGKWGCN  237 (432)
T ss_pred             EEEeC-CHHHHHHHHhC-CCCEEEEECChHHHHHHHHHHHh-cCCcEEEEccCCCcEEEcCCCCHHHHHHHHHHHhhhcc
Confidence            99998 56678888887 69999999999999999999988 89999999999999999999999999999999999 59


Q ss_pred             cCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCC
Q 011130          290 QGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAK  369 (493)
Q Consensus       290 ~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~  369 (493)
                      +||.|++++|+|||++++|+|+++|++++.++++||| ++++++||++++.+++++.++|++++. |+++++||.. +..
T Consensus       238 ~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p-~~~~~~gpli~~~~~~~v~~~i~~a~~-ga~~l~gg~~-~~~  314 (432)
T cd07137         238 NGQACIAPDYVLVEESFAPTLIDALKNTLEKFFGENP-KESKDLSRIVNSHHFQRLSRLLDDPSV-ADKIVHGGER-DEK  314 (432)
T ss_pred             CCCcccCCCEEEEcHHHHHHHHHHHHHHHHHHhCCCC-CccCCcCCcCCHHHHHHHHHHHHHHHh-CCeEEeCCCc-CCC
Confidence            9999999999999999999999999999999999999 568999999999999999999999988 8999999865 336


Q ss_pred             CceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcC
Q 011130          370 GYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFD  449 (493)
Q Consensus       370 g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~  449 (493)
                      |+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||+++|||+|.+.++++++++++|.||||++.
T Consensus       315 g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~deai~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~  394 (432)
T cd07137         315 NLYIEPTILLDPPLDSSIMTEEIFGPLLPIITVKKIEESIEIINSRPKPLAAYVFTKNKELKRRIVAETSSGGVTFNDTV  394 (432)
T ss_pred             CCEEeeEEEecCCCcchhhhcccccCceEEEEeCCHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhCCcCcEEECCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             C--CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          450 V--FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       450 ~--~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      .  ..+.+||||+|+||+|+++|.+++++|++.|+|++
T Consensus       395 ~~~~~~~~PfGG~k~SG~G~~~g~~~l~~f~~~k~v~~  432 (432)
T cd07137         395 VQYAIDTLPFGGVGESGFGAYHGKFSFDAFSHKKAVLY  432 (432)
T ss_pred             ccccCCCCCCCCcCcCcCCccccHHHHHHhccCceeeC
Confidence            4  34779999999999999999999999999998853


No 100
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616)  most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=100.00  E-value=1.3e-73  Score=593.59  Aligned_cols=368  Identities=30%  Similarity=0.437  Sum_probs=339.6

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcC
Q 011130          107 RAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG  186 (493)
Q Consensus       107 ~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~  186 (493)
                      +.+++|++||+  .|+++|..+|.++|.+++++|+++.++|++++++|+|||+.++...|+..+++.++|++..++++.+
T Consensus         2 ~~v~~a~~a~~--~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~~~~~   79 (449)
T cd07136           2 SLVEKQRAFFK--TGATKDVEFRIEQLKKLKQAIKKYENEILEALKKDLGKSEFEAYMTEIGFVLSEINYAIKHLKKWMK   79 (449)
T ss_pred             hHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            56899999999  9999999999999999999999999999999999999999998756999999999999998877654


Q ss_pred             c-cCCCC---CCceeEEEeeeeeeE----------------------------------------------------eEE
Q 011130          187 L-TAPAD---GPYHVQTLHEPIGVA----------------------------------------------------GVL  210 (493)
Q Consensus       187 ~-~~~~~---~~~~~~~~~~PlGVv----------------------------------------------------gvv  210 (493)
                      . ..+..   .+...++.++|+|||                                                    |++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~vi~Kps~~tp~~~~~l~~~~~~alP~gv~  159 (449)
T cd07136          80 PKRVKTPLLNFPSKSYIYYEPYGVVLIIAPWNYPFQLALAPLIGAIAAGNTAVLKPSELTPNTSKVIAKIIEETFDEEYV  159 (449)
T ss_pred             CCccCCccccCCceeEEEEecCeEEEEECCCchHHHHHHHHHHHHHhcCCEEEEECcccchHHHHHHHHHHHHhCCCCEE
Confidence            3 22211   234568899999999                                                    999


Q ss_pred             EeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhc
Q 011130          211 NIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQ  290 (493)
Q Consensus       211 ~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~  290 (493)
                      |+|++ +.+.+..|+.|+ ||+|.||||+++|+.|++.+++ ++||+++|+|||||+||++|||+|.|++.+++++|.|+
T Consensus       160 ~~v~g-~~~~~~~L~~~~-v~~V~fTGS~~~g~~i~~~aa~-~~~~v~lElgGknp~iV~~dADld~aa~~i~~~~~~~~  236 (449)
T cd07136         160 AVVEG-GVEENQELLDQK-FDYIFFTGSVRVGKIVMEAAAK-HLTPVTLELGGKSPCIVDEDANLKLAAKRIVWGKFLNA  236 (449)
T ss_pred             EEEeC-ChHHHHHHhcCC-CCEEEEECCHHHHHHHHHHHHh-cCCCEEEEecCCCeEEECCCCCHHHHHHHHHHHHHccc
Confidence            99998 556788888775 9999999999999999999987 89999999999999999999999999999999999999


Q ss_pred             CCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCC
Q 011130          291 GQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKG  370 (493)
Q Consensus       291 GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g  370 (493)
                      ||.|++++|||||++++|+|+++|+++++++++|+|.+ .+++||++++.+++++.++|++     +++++||... ..|
T Consensus       237 GQ~C~a~~rv~V~~~i~d~f~~~L~~~~~~~~~g~p~~-~~~~gpli~~~~~~~i~~~i~~-----a~~~~gG~~~-~~g  309 (449)
T cd07136         237 GQTCVAPDYVLVHESVKEKFIKELKEEIKKFYGEDPLE-SPDYGRIINEKHFDRLAGLLDN-----GKIVFGGNTD-RET  309 (449)
T ss_pred             CCcccCCCEEEEcHHHHHHHHHHHHHHHHHhcCCCCCC-CCCccCcCCHHHHHHHHHHHhc-----ceEEECCCcC-CCC
Confidence            99999999999999999999999999999999999997 8899999999999999999986     3899999753 358


Q ss_pred             ceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC
Q 011130          371 YYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV  450 (493)
Q Consensus       371 ~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~  450 (493)
                      +|++|||+.+++++|.++++|+||||++|++|+|+||||+++|+++|||+++|||+|.+.+.++++++++|.||||+...
T Consensus       310 ~~~~Ptvl~~v~~~~~~~~eE~FGPVl~v~~~~~~~eai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~~~~  389 (449)
T cd07136         310 LYIEPTILDNVTWDDPVMQEEIFGPILPVLTYDTLDEAIEIIKSRPKPLALYLFSEDKKVEKKVLENLSFGGGCINDTIM  389 (449)
T ss_pred             CEEeeEEEecCCCcChHHhccccCCeeEEEEeCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998654


Q ss_pred             --CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          451 --FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       451 --~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                        ..+.+||||+|+||+|+++|.+++++||+.|+|++.
T Consensus       390 ~~~~~~~PfGG~k~SG~G~~~g~~~l~~~t~~k~v~~~  427 (449)
T cd07136         390 HLANPYLPFGGVGNSGMGSYHGKYSFDTFSHKKSILKK  427 (449)
T ss_pred             cccCCCCCccCcCcccCCcccCHHHHHHhccceEEEEc
Confidence              347899999999999999999999999999999876


No 101
>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate.  The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.
Probab=100.00  E-value=6.2e-73  Score=591.72  Aligned_cols=388  Identities=24%  Similarity=0.290  Sum_probs=347.2

Q ss_pred             ceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCC--CCCCHHHH----HHHHHHHHHHHH
Q 011130           68 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPW--PRMTAYER----SKIILRFADLLE  141 (493)
Q Consensus        68 ~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w--~~~~~~~R----~~iL~~la~~l~  141 (493)
                      +||||+|+.+  +++++++||+||+++++++.++.+|+++|+++|++||+  .|  +.++..+|    .++|.+++++|+
T Consensus         1 ~~i~g~~~~~--~~~~~~~nP~t~~~i~~~~~a~~~dv~~Av~aA~~A~~--~W~~~~~~~~~R~l~~~~il~~~a~~l~   76 (489)
T cd07126           1 NLVAGKWKGA--SNYTTLLDPLNGDKFISVPDTDEDEINEFVDSLRQCPK--SGLHNPLKNPERYLLYGDVSHRVAHELR   76 (489)
T ss_pred             CcCCCEEecC--CCcEEeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH--hccccCCCHHHHhhhHHHHHHHHHHHHH
Confidence            4799999864  57899999999999999999999999999999999999  77  66789999    899999999999


Q ss_pred             Hh--HHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccC--CC-CCCceeEEEeeeeeeE---------
Q 011130          142 RH--NDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTA--PA-DGPYHVQTLHEPIGVA---------  207 (493)
Q Consensus       142 ~~--~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~--~~-~~~~~~~~~~~PlGVv---------  207 (493)
                      ++  .++|++++++|+|||+.+++. |+..+++.++||++..++..+...  +. ..+...++.++|+|||         
T Consensus        77 ~~~~~~~la~~~~~e~GK~~~~a~~-Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~v~r~P~GVV~~I~PwNfP  155 (489)
T cd07126          77 KPEVEDFFARLIQRVAPKSDAQALG-EVVVTRKFLENFAGDQVRFLARSFNVPGDHQGQQSSGYRWPYGPVAIITPFNFP  155 (489)
T ss_pred             cCCCHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCceeccCCCCCCceeEEEEecceEEEEECCCchH
Confidence            99  599999999999999999875 999999999999998877655432  21 1244678999999999         


Q ss_pred             --------------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHH
Q 011130          208 --------------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGK  243 (493)
Q Consensus       208 --------------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~  243 (493)
                                                                  |++|+|+|.+.+ +..|+.|+++++|+||||+++|+
T Consensus       156 ~~l~~~~ia~ALaaGN~VVlKPSe~tp~~~~~l~~~~~~aGlP~gv~~vv~G~~~~-~~~l~~~~~v~~V~FTGS~~vGr  234 (489)
T cd07126         156 LEIPALQLMGALFMGNKPLLKVDSKVSVVMEQFLRLLHLCGMPATDVDLIHSDGPT-MNKILLEANPRMTLFTGSSKVAE  234 (489)
T ss_pred             HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHhCcCcCcEEEEeCCchh-HHHHhcCCCCCEEEEECCHHHHH
Confidence                                                        999999986655 45578899999999999999999


Q ss_pred             HHHHHHhhcCCCceeEecCCCCceEEccCC-CHHHHHHHHHHHHHhhcCCcccCCCeeEecchh-HHHHHHHHHHHHhhc
Q 011130          244 IVLQLAAKSNLKPVTLELGGKSPFIVCEDA-DVDKAAELAHYALFFNQGQCCCAGSRTFVHESV-YDQFVEKANALAMKR  321 (493)
Q Consensus       244 ~v~~~a~~~~~~pv~lelgG~~p~iV~~da-Dl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i-~d~f~~~l~~~~~~~  321 (493)
                      .|...++    +++.+|+|||||+||++|| |+|.|++.+++++|.|+||.|++++|||||+++ +|+|+++|++.++++
T Consensus       235 ~i~~~~g----~k~~lElgg~~~~IV~~Da~dld~a~~~~~~g~f~naGQ~C~a~~rv~V~~~i~~d~f~~~l~~~~~~~  310 (489)
T cd07126         235 RLALELH----GKVKLEDAGFDWKILGPDVSDVDYVAWQCDQDAYACSGQKCSAQSILFAHENWVQAGILDKLKALAEQR  310 (489)
T ss_pred             HHHHHhC----CCEEeecCCCCceEECCCcccHHHHHHHHHHHHHhcCCCcCCCCceEEEeCcchHHHHHHHHHHHHHhc
Confidence            9988765    4789999999999999999 999999999999999999999999999999995 689999999999999


Q ss_pred             ccCCCCCCCCccccCCCHHHHHHHHHHHHHHHh-CCCEEEeCCcccCC----CC-ceeeceEEec------CCCCccccc
Q 011130          322 VVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVD-GGAKLETGGERLGA----KG-YYIKPTVFTG------VKDDMLIAK  389 (493)
Q Consensus       322 ~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~-~ga~v~~gg~~~~~----~g-~~~~Ptvl~~------~~~~~~i~~  389 (493)
                      ++|+     +++||+++.. .+++.++|+++++ +|+++++||...+.    .| .|++|||+..      ++++|++++
T Consensus       311 ~~g~-----~~~Gpli~~~-~~~v~~~i~~a~~~~Ga~~l~GG~~~~~~~~~~~~~~~~PTvl~~~~~~~~~~~~~~i~~  384 (489)
T cd07126         311 KLED-----LTIGPVLTWT-TERILDHVDKLLAIPGAKVLFGGKPLTNHSIPSIYGAYEPTAVFVPLEEIAIEENFELVT  384 (489)
T ss_pred             ccCC-----CcCCCCcCHH-HHHHHHHHHHHHhCCCCEEEeCCcccccccccCCcceecCeEEEeccccccCCCCCHHHh
Confidence            9885     4789999998 8999999999997 89999999976432    23 3899999842      567999999


Q ss_pred             cccccceEEEEEeCC--HHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeE--EEECCcCCCCCC----CCccCCC
Q 011130          390 DEIFGPVQSILKYKD--LDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGS--VWINCFDVFDAA----IPFGGYK  461 (493)
Q Consensus       390 ~E~fgPvl~v~~~~~--~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~--V~VN~~~~~~~~----~pfGG~~  461 (493)
                      ||+||||++|++|+|  ++|||+++|+++|||++||||+|.++++++++++++|+  |+||+.++..+.    .||||+|
T Consensus       385 eEiFGPVl~V~~~~~~~~deai~~aN~~~~gL~~~vft~d~~~~~~~~~~~~~G~~~v~~n~~~~~~~~~~~~~pfgg~k  464 (489)
T cd07126         385 TEVFGPFQVVTEYKDEQLPLVLEALERMHAHLTAAVVSNDIRFLQEVLANTVNGTTYAGIRARTTGAPQNHWFGPAGDPR  464 (489)
T ss_pred             CCCcCCEEEEEEECCCCHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHhCCcceEEEEecCCCCCCCcccCcCCCCCCc
Confidence            999999999999999  99999999999999999999999999999999999999  668887765544    8999999


Q ss_pred             CCCCCCcchH
Q 011130          462 QSGQGREKGS  471 (493)
Q Consensus       462 ~SG~G~~~g~  471 (493)
                      +||+|+++..
T Consensus       465 ~sg~g~~~~~  474 (489)
T cd07126         465 GAGIGTPEAI  474 (489)
T ss_pred             ccCCCCHhHH
Confidence            9999998765


No 102
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=100.00  E-value=4.5e-73  Score=591.36  Aligned_cols=373  Identities=38%  Similarity=0.594  Sum_probs=346.3

Q ss_pred             HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHH
Q 011130          104 DVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADK  183 (493)
Q Consensus       104 ~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~  183 (493)
                      |+++++++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||..++.. |+..+++.++++++..++
T Consensus         1 ~v~~ai~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~-ei~~~~~~l~~~~~~~~~   77 (432)
T cd07105           1 DADQAVEAAAAAFP--AWSKTPPSERRDILLKAADLLESRRDEFIEAMMEETGATAAWAGF-NVDLAAGMLREAASLITQ   77 (432)
T ss_pred             CHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            57899999999999  999999999999999999999999999999999999999878765 999999999999998877


Q ss_pred             hcCccCCCC-CCceeEEEeeeeeeE-----------------------------------------------------eE
Q 011130          184 IQGLTAPAD-GPYHVQTLHEPIGVA-----------------------------------------------------GV  209 (493)
Q Consensus       184 ~~~~~~~~~-~~~~~~~~~~PlGVv-----------------------------------------------------gv  209 (493)
                      ..+...+.. .+...++.++|+|||                                                     |+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~~~l~~~~~~aGlP~gv  157 (432)
T cd07105          78 IIGGSIPSDKPGTLAMVVKEPVGVVLGIAPWNAPVILGTRAIAYPLAAGNTVVLKASELSPRTHWLIGRVFHEAGLPKGV  157 (432)
T ss_pred             hcCeecccCCCCceeEEEEecceEEEEECCcCcHHHHHHHHHHHHHhcCCEEEEECCccChHHHHHHHHHHHHcCcCCCc
Confidence            644444432 344567899999999                                                     89


Q ss_pred             EEeeeCCc---cchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHH
Q 011130          210 LNIVSGYG---PTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYAL  286 (493)
Q Consensus       210 v~vv~~~~---~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~  286 (493)
                      +|+|++..   .++++.|+.||+++.|+||||+.+|+.|++.+++ +++|+++|+|||||+||++|+|++.|++.|++++
T Consensus       158 ~~~v~g~~~~~~~~~~~l~~~~~v~~v~ftGs~~~g~~i~~~aa~-~~~~~~lElgGk~p~iV~~dadl~~aa~~i~~~~  236 (432)
T cd07105         158 LNVVTHSPEDAPEVVEALIAHPAVRKVNFTGSTRVGRIIAETAAK-HLKPVLLELGGKAPAIVLEDADLDAAANAALFGA  236 (432)
T ss_pred             EEEEeCCCCchHHHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHh-cCCeEEEeCCCCCceEECCCCCHHHHHHHHHHHH
Confidence            99999742   3578899999999999999999999999999988 8999999999999999999999999999999999


Q ss_pred             HhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCccc
Q 011130          287 FFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERL  366 (493)
Q Consensus       287 ~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~  366 (493)
                      |+|+||.|+++++||||++++|+|+++|++++.++++|     ++++||++++.+++++.++|++++++|+++++||...
T Consensus       237 ~~~~GQ~C~a~~~v~V~~~i~~~f~~~l~~~~~~~~~g-----~~~~gp~i~~~~~~~~~~~i~~a~~~ga~~~~gg~~~  311 (432)
T cd07105         237 FLNSGQICMSTERIIVHESIADEFVEKLKAAAEKLFAG-----PVVLGSLVSAAAADRVKELVDDALSKGAKLVVGGLAD  311 (432)
T ss_pred             HhcCCCCCcCCceEEEcHHHHHHHHHHHHHHHHhhcCC-----CCcccccCCHHHHHHHHHHHHHHHHCCCEEEeCCCcC
Confidence            99999999999999999999999999999999999998     5789999999999999999999999999999999764


Q ss_pred             C-CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEE
Q 011130          367 G-AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWI  445 (493)
Q Consensus       367 ~-~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~V  445 (493)
                      . ..|+|++|||+.+++++|.+++||+||||++|++|+|.||||+++|+++|||+++|||+|.+.++++++++++|+|||
T Consensus       312 ~~~~~~~~~Ptvl~~~~~~~~~~~eE~fgPvl~v~~~~~~deai~~~n~~~~gL~~~v~t~d~~~~~~~~~~l~~g~v~v  391 (432)
T cd07105         312 ESPSGTSMPPTILDNVTPDMDIYSEESFGPVVSIIRVKDEEEAVRIANDSEYGLSAAVFTRDLARALAVAKRIESGAVHI  391 (432)
T ss_pred             CCCCCeEEeeEEEecCCCCCHHHhCCCcCCeEEEEeeCCHHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcCeEEE
Confidence            2 368999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCC-CCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          446 NCFDVF-DAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       446 N~~~~~-~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      |+++.. .+.+||||+|+||+|+++|.+++++|++.|+|++
T Consensus       392 N~~~~~~~~~~PfgG~~~SG~G~~~g~~~l~~~~~~k~v~~  432 (432)
T cd07105         392 NGMTVHDEPTLPHGGVKSSGYGRFNGKWGIDEFTETKWITI  432 (432)
T ss_pred             CCCCCCCCCCCCCCCcccccccccChHHHHHHhhceEEEeC
Confidence            997654 4789999999999999999999999999999863


No 103
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=100.00  E-value=2.1e-72  Score=585.14  Aligned_cols=371  Identities=30%  Similarity=0.392  Sum_probs=339.1

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC-hhhhhhccHHHHHHHHHHHHHhhHHhc
Q 011130          107 RAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKP-FEQSAQTEVPMTTRLFRYYAGWADKIQ  185 (493)
Q Consensus       107 ~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~-~~~a~~~Ev~~~~~~l~~~a~~~~~~~  185 (493)
                      +.+++|++||+  .|+++|..+|.++|++++++|++|.++|++++++|+||+ ..++...|+..+++.++|++..+.+..
T Consensus         2 ~~~~~a~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~ea~~~ev~~~i~~~~~~~~~~~~~~   79 (434)
T cd07133           2 ALLERQKAAFL--ANPPPSLEERRDRLDRLKALLLDNQDALAEAISADFGHRSRHETLLAEILPSIAGIKHARKHLKKWM   79 (434)
T ss_pred             hHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36788999999  999999999999999999999999999999999999985 566655699999999999998876654


Q ss_pred             CccC-CC---CCCceeEEEeeeeeeE----------------------------------------------------eE
Q 011130          186 GLTA-PA---DGPYHVQTLHEPIGVA----------------------------------------------------GV  209 (493)
Q Consensus       186 ~~~~-~~---~~~~~~~~~~~PlGVv----------------------------------------------------gv  209 (493)
                      .... ..   ..+...++.++|+|||                                                    |+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~pwN~P~~~~~~~~~~ALaaGN~vvlKps~~~p~~~~~l~~l~~~alP~g~  159 (434)
T cd07133          80 KPSRRHVGLLFLPAKAEVEYQPLGVVGIIVPWNYPLYLALGPLIAALAAGNRVMIKPSEFTPRTSALLAELLAEYFDEDE  159 (434)
T ss_pred             CCcccCCccccCCCceEEEEecccEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCcCe
Confidence            4321 11   1234568899999998                                                    99


Q ss_pred             EEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhh
Q 011130          210 LNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFN  289 (493)
Q Consensus       210 v~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~  289 (493)
                      +|+|++ +.++++.|+.|+ +|+|+||||+.+|+.|++.++. ++||+++|+|||||+||++|||++.|++.+++++|+|
T Consensus       160 ~~~v~g-~~~~~~~l~~~~-v~~V~ftGs~~~g~~v~~~aa~-~~~~~~lElgGk~~~iV~~dadl~~aa~~i~~~~~~~  236 (434)
T cd07133         160 VAVVTG-GADVAAAFSSLP-FDHLLFTGSTAVGRHVMRAAAE-NLTPVTLELGGKSPAIIAPDADLAKAAERIAFGKLLN  236 (434)
T ss_pred             EEEEeC-ChHHHHHHHhCC-CCEEEEeCchHHHHHHHHHHHh-cCceEEEEccCCCcEEEeCCCCHHHHHHHHHHHHhcc
Confidence            999998 556788888765 9999999999999999999988 8999999999999999999999999999999999999


Q ss_pred             cCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC--
Q 011130          290 QGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG--  367 (493)
Q Consensus       290 ~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~--  367 (493)
                      +||.|+++++||||++++|+|+++|++++.++++|+  ++++++||++++.+++++.++|++++++|+++++||....  
T Consensus       237 ~GQ~C~a~~rv~V~~~i~~~f~~~l~~~~~~~~~g~--~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~  314 (434)
T cd07133         237 AGQTCVAPDYVLVPEDKLEEFVAAAKAAVAKMYPTL--ADNPDYTSIINERHYARLQGLLEDARAKGARVIELNPAGEDF  314 (434)
T ss_pred             CCCcccCCCEEEEcHHHHHHHHHHHHHHHHHhcCCC--CCCCCcCCCCCHHHHHHHHHHHHHHHhCCCEEEecCCCCcCC
Confidence            999999999999999999999999999999999986  4678999999999999999999999999999999987543  


Q ss_pred             CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECC
Q 011130          368 AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINC  447 (493)
Q Consensus       368 ~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~  447 (493)
                      ..|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||+++|||+|.+.+.++++++++|+|+||+
T Consensus       315 ~~g~~~~Ptvl~~~~~~~~i~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gL~~~v~t~d~~~a~~~~~~l~~G~v~iN~  394 (434)
T cd07133         315 AATRKLPPTLVLNVTDDMRVMQEEIFGPILPILTYDSLDEAIDYINARPRPLALYYFGEDKAEQDRVLRRTHSGGVTIND  394 (434)
T ss_pred             CCCcEEeeEEEeCCCCCCcccccccCCCeeEEEEeCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC--CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          448 FDV--FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       448 ~~~--~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      +..  .++.+||||+|+||+|+++|.+++++||+.|+|+
T Consensus       395 ~~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~ft~~k~v~  433 (434)
T cd07133         395 TLLHVAQDDLPFGGVGASGMGAYHGKEGFLTFSHAKPVF  433 (434)
T ss_pred             cccccCCCCCCcCCCCcccCCCcCCHHHHHHhcccceec
Confidence            653  4478999999999999999999999999999874


No 104
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=100.00  E-value=2.4e-72  Score=584.48  Aligned_cols=372  Identities=35%  Similarity=0.448  Sum_probs=343.3

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcC
Q 011130          107 RAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG  186 (493)
Q Consensus       107 ~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~  186 (493)
                      +++++|++||+  .|+++|..+|.++|.+++++|+++.++|++++++|+|||+.++...|+..+++.+++++....+...
T Consensus         2 ~~~~~a~~a~~--~W~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~~~~~~~~~~   79 (433)
T cd07134           2 RVFAAQQAHAL--ALRASTAAERIAKLKRLKKAILARREEIIAALAADFRKPAAEVDLTEILPVLSEINHAIKHLKKWMK   79 (433)
T ss_pred             hHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            57899999999  9999999999999999999999999999999999999999998655999999999999887655433


Q ss_pred             c-cC--CC-CCCceeEEEeeeeeeE----------------------------------------------------eEE
Q 011130          187 L-TA--PA-DGPYHVQTLHEPIGVA----------------------------------------------------GVL  210 (493)
Q Consensus       187 ~-~~--~~-~~~~~~~~~~~PlGVv----------------------------------------------------gvv  210 (493)
                      . ..  +. ..+...++.++|+|||                                                    |++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~~~~~~~~~~a~p~g~v  159 (433)
T cd07134          80 PKRVRTPLLLFGTKSKIRYEPKGVCLIISPWNYPFNLAFGPLVSAIAAGNTAILKPSELTPHTSAVIAKIIREAFDEDEV  159 (433)
T ss_pred             CcccCCccccCCCceEEEEecCCEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCccCHHHHHHHHHHHHHhCCcCEE
Confidence            2 11  11 1234568999999999                                                    999


Q ss_pred             EeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhc
Q 011130          211 NIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQ  290 (493)
Q Consensus       211 ~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~  290 (493)
                      +++++ +.+.+..|+.|+ ++.|.||||+.+|+.|++.+++ +++|+++|+|||||+||++|||++.|++.+++++|.++
T Consensus       160 ~~v~g-~~~~~~~l~~~~-v~~v~ftGs~~~g~~i~~~aa~-~~~~~~lelgG~~~~iV~~dAD~~~aa~~i~~~~~~~~  236 (433)
T cd07134         160 AVFEG-DAEVAQALLELP-FDHIFFTGSPAVGKIVMAAAAK-HLASVTLELGGKSPTIVDETADLKKAAKKIAWGKFLNA  236 (433)
T ss_pred             EEEeC-ChhHHHHHHhCC-CCEEEEECChHHHHHHHHHHHh-cCCcEEEEccCCCcEEECCCCCHHHHHHHHHHHhhcCc
Confidence            99998 557888899997 9999999999999999999887 88999999999999999999999999999999999999


Q ss_pred             CCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCC-CCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCC
Q 011130          291 GQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDP-FKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAK  369 (493)
Q Consensus       291 GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p-~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~  369 (493)
                      ||.|+++++||||++++|+|+++|++++.+++.|+| .+.++++||++++.+++++.++|++++++|+++++||.. +..
T Consensus       237 GQ~C~a~~rv~V~~~v~d~f~~~L~~~~~~~~~~~~~~~~~~~~gpli~~~~~~~i~~~i~~a~~~ga~~~~gg~~-~~~  315 (433)
T cd07134         237 GQTCIAPDYVFVHESVKDAFVEHLKAEIEKFYGKDAARKASPDLARIVNDRHFDRLKGLLDDAVAKGAKVEFGGQF-DAA  315 (433)
T ss_pred             CCcccCCcEEEECHHHHHHHHHHHHHHHHHHcCCCCCcCCCCccCCcCCHHHHHHHHHHHHHHHhCCCEEEeCCCc-CCC
Confidence            999999999999999999999999999999988887 889999999999999999999999999999999999975 335


Q ss_pred             CceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcC
Q 011130          370 GYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFD  449 (493)
Q Consensus       370 g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~  449 (493)
                      |+|++|||+.+++++|++++||+||||++|++|+|.||+|+++|+++|||+++|||+|.+.++++++++++|.||||+++
T Consensus       316 g~~~~Ptvl~~~~~~~~~~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~v~iN~~~  395 (433)
T cd07134         316 QRYIAPTVLTNVTPDMKIMQEEIFGPVLPIITYEDLDEVIEYINAKPKPLALYVFSKDKANVNKVLARTSSGGVVVNDVV  395 (433)
T ss_pred             CCEEeeEEEeCCCCccHHHhccccCceEEEEEeCCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcceEEECCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             C--CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          450 V--FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       450 ~--~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      .  ..+.+||||+|+||+|+++|.+++++||+.|+++
T Consensus       396 ~~~~~~~~PfGG~k~SG~G~~~g~~~l~~~~~~k~i~  432 (433)
T cd07134         396 LHFLNPNLPFGGVNNSGIGSYHGVYGFKAFSHERAVL  432 (433)
T ss_pred             cccCCCCCCCCCcCcccCCCcCcHHHHHHhcccceee
Confidence            4  3478999999999999999999999999999875


No 105
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=100.00  E-value=7.7e-72  Score=628.68  Aligned_cols=395  Identities=29%  Similarity=0.443  Sum_probs=363.8

Q ss_pred             ceeCCEeeeCCCCCeeeeecCCC-CCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           68 LLINGQFVDSASGKTFPTLDPRT-GDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        68 ~~I~G~~~~~~~~~~~~v~~P~t-g~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      .+|+|+.   .++..++++||+| +++|++|+.++.+|+++||++|++||+  .|+++|..+|.++|++++++|+++.++
T Consensus       649 p~~~~~~---~~~~~~~v~nPa~~~~~vg~v~~a~~~dv~~Av~aA~~A~~--~W~~~p~~eRa~iL~r~Adlle~~~~e  723 (1318)
T PRK11809        649 PMLEDPV---AAGEMSPVINPADPRDIVGYVREATPAEVEQALESAVNAAP--IWFATPPAERAAILERAADLMEAQMQT  723 (1318)
T ss_pred             CcccCcC---CCCCEEEeECCCCCCeeEEEEeCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHCHHH
Confidence            3567742   2467899999998 899999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------  207 (493)
                      |+.++++|+|||+.++.. ||..++++|+||+..+++...           ...++|+|||                   
T Consensus       724 L~~l~~~EaGKt~~~A~~-EV~eaidflryyA~~a~~~~~-----------~~~~~PlGVV~~IsPWNFPlai~~g~iaa  791 (1318)
T PRK11809        724 LMGLLVREAGKTFSNAIA-EVREAVDFLRYYAGQVRDDFD-----------NDTHRPLGPVVCISPWNFPLAIFTGQVAA  791 (1318)
T ss_pred             HHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcC-----------CceeecccEEEEECCCccHHHHHHHHHHH
Confidence            999999999999999875 999999999999987765311           2457899998                   


Q ss_pred             ----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcC
Q 011130          208 ----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSN  253 (493)
Q Consensus       208 ----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~  253 (493)
                                                        |++|+|+|.+.++++.|+.||+|++|+||||+++|+.|.+.+++ +
T Consensus       792 ALaAGN~VV~KPseqTpl~a~~lv~ll~eAGlP~gvlqlv~G~g~~vg~~Lv~~p~V~~V~FTGSt~tg~~I~~~aA~-~  870 (1318)
T PRK11809        792 ALAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPAGVVQLLPGRGETVGAALVADARVRGVMFTGSTEVARLLQRNLAG-R  870 (1318)
T ss_pred             HHHcCCeEEEeCCCCcHHHHHHHHHHHHHhCcCcCeEEEeeCCcHHHHHHHhcCCCcCEEEEeCCHHHHHHHHHHHhh-h
Confidence                                              89999999888899999999999999999999999999998876 4


Q ss_pred             C------CceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCC
Q 011130          254 L------KPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPF  327 (493)
Q Consensus       254 ~------~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~  327 (493)
                      +      +|+++|+|||||+||++|||+|.|++.++.|+|.++||+|+++++||||++++|+|+++|++.+.++++|||.
T Consensus       871 l~~~g~~~pliaElGGkNa~IVdsdAdle~Av~~iv~sAF~~aGQrCsA~~rl~V~e~Iad~fl~~L~~a~~~l~vGdP~  950 (1318)
T PRK11809        871 LDPQGRPIPLIAETGGQNAMIVDSSALTEQVVADVLASAFDSAGQRCSALRVLCLQDDVADRTLKMLRGAMAECRMGNPD  950 (1318)
T ss_pred             cccccCceeEEEecCCccceEECCCCCHHHHHHHHHHHHHhcCCCccccCcEEEEcHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            4      7999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC---CCCceeeceEEecCCCCccccccccccceEEEEEeC-
Q 011130          328 KGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG---AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK-  403 (493)
Q Consensus       328 ~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~---~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~-  403 (493)
                      +.++++||+|++.+++++.++|+++++.|++++.|+....   ..|+|++|||+..  +++.++++|+||||++|++|+ 
T Consensus       951 ~~~tdvGPvId~~a~~~i~~~I~~a~~~G~~v~~g~~~~~~~~~~G~fv~PTIi~~--~~~~~l~eEiFGPVL~V~~~~~ 1028 (1318)
T PRK11809        951 RLSTDIGPVIDAEAKANIERHIQAMRAKGRPVFQAARENSEDWQSGTFVPPTLIEL--DSFDELKREVFGPVLHVVRYNR 1028 (1318)
T ss_pred             cccCCcCCCCCHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCCCCCeEEeeEEEec--cchhhhcCcccCceEEEEEeCC
Confidence            9999999999999999999999999999999998875422   4699999999974  567889999999999999996 


Q ss_pred             -CHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC--CCCCCccCCCCCCCC-CcchHHHHHhhhh
Q 011130          404 -DLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF--DAAIPFGGYKQSGQG-REKGSYSLSNYLQ  479 (493)
Q Consensus       404 -~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~--~~~~pfGG~~~SG~G-~~~g~~~l~~~~~  479 (493)
                       +++|+|+++|+++|||+++|||+|.+++.++++++++|+||||+....  ...+||||+|.||+| +.+|++++..|+.
T Consensus      1029 ~~ldeaI~~iN~t~yGLt~gV~Srd~~~~~~v~~~l~aGnvyINr~~~gavvg~qPFGG~g~SG~G~kaGGp~yL~~f~~ 1108 (1318)
T PRK11809       1029 NQLDELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLA 1108 (1318)
T ss_pred             CCHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHhCCEeEEEECCCCcCCCcCCCCCCCcCcCCCCCCCCCHHHHHHHhc
Confidence             799999999999999999999999999999999999999999986543  245799999999999 6899999999999


Q ss_pred             ceE
Q 011130          480 VKA  482 (493)
Q Consensus       480 ~k~  482 (493)
                      .+.
T Consensus      1109 ~~~ 1111 (1318)
T PRK11809       1109 TRP 1111 (1318)
T ss_pred             cCC
Confidence            874


No 106
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=100.00  E-value=1.9e-71  Score=627.21  Aligned_cols=401  Identities=31%  Similarity=0.462  Sum_probs=367.7

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCC-CCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRT-GDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHND  145 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~t-g~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~  145 (493)
                      +.+|+|+..   .+..++++||+| +++|++++.++.+++++||++|++||+  .|+.+|..+|.++|++++++|+++++
T Consensus       556 ~~~i~g~~~---~~~~~~v~nP~~~~~~vg~v~~a~~~~v~~Av~aA~~A~~--~W~~~~~~~Ra~iL~raAdll~~~~~  630 (1208)
T PRK11905        556 APLLAGGDV---DGGTRPVLNPADHDDVVGTVTEASAEDVERALAAAQAAFP--EWSATPAAERAAILERAADLMEAHMP  630 (1208)
T ss_pred             cceeccccc---cCCeeeEECCCCCCceEEEEeCCCHHHHHHHHHHHHHHHH--HhhhCCHHHHHHHHHHHHHHHHHhHH
Confidence            446677654   356789999999 999999999999999999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCceeEEEeeeeeeE------------------
Q 011130          146 EIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVA------------------  207 (493)
Q Consensus       146 ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv------------------  207 (493)
                      +|+.++++|+||++.++.. |+..++++++||+..+++..+.           ..++|+|||                  
T Consensus       631 eL~~l~~~E~GKt~~ea~~-Ev~eaid~lr~ya~~a~~~~~~-----------~~~~P~GVv~~IsPwNfPlai~~g~i~  698 (1208)
T PRK11905        631 ELFALAVREAGKTLANAIA-EVREAVDFLRYYAAQARRLLNG-----------PGHKPLGPVVCISPWNFPLAIFTGQIA  698 (1208)
T ss_pred             HHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCC-----------ceecCccEEEEEcCCcCHHHHHHHHHH
Confidence            9999999999999999875 9999999999999987765321           245688887                  


Q ss_pred             -----------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhc
Q 011130          208 -----------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKS  252 (493)
Q Consensus       208 -----------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~  252 (493)
                                                         |++|+|+|.+.++++.|+.||+|+.|+||||+++|+.|.+.++..
T Consensus       699 aALaaGN~VV~KPse~tpl~a~~l~~ll~eAGlP~gvl~lV~G~g~~vg~~Lv~~p~v~~V~FTGSt~vg~~I~~~~A~~  778 (1208)
T PRK11905        699 AALVAGNTVLAKPAEQTPLIAARAVRLLHEAGVPKDALQLLPGDGRTVGAALVADPRIAGVMFTGSTEVARLIQRTLAKR  778 (1208)
T ss_pred             HHHHcCCEEEEeCCcccHHHHHHHHHHHHHcCCCcccEEEeeCCchHHHHHHHcCCCcCEEEEeCCHHHHHHHHHHHHhh
Confidence                                               999999998888999999999999999999999999999998862


Q ss_pred             --CCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCC
Q 011130          253 --NLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGG  330 (493)
Q Consensus       253 --~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~  330 (493)
                        ..+|+++|+|||||+||++|||+|.|++.+++++|.++||+|+++++||||++++|+|+++|++++.++++|||.+.+
T Consensus       779 ~~~~~pli~ElGGkN~~IV~~dAdle~Av~~iv~saF~~aGQ~CsA~~rl~V~~si~d~f~e~L~~~~~~l~vGdP~d~~  858 (1208)
T PRK11905        779 SGPPVPLIAETGGQNAMIVDSSALPEQVVADVIASAFDSAGQRCSALRVLCLQEDVADRVLTMLKGAMDELRIGDPWRLS  858 (1208)
T ss_pred             cCCCCeEEEecCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCCccccCcEEEEehhHHHHHHHHHHHHHHHhcCCCchhcc
Confidence              248999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC-CCCceeeceEEecCCCCccccccccccceEEEEEeC--CHHH
Q 011130          331 IQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG-AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK--DLDE  407 (493)
Q Consensus       331 ~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~-~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~--~~~e  407 (493)
                      +++||+|++.+++++.++|+++++.|+.++.|+.... ..|+|+.|||+..  +++.++++|+||||++|++|+  +++|
T Consensus       859 t~~GPvId~~a~~~i~~~I~~a~~~G~~l~~g~~~~~~~~G~fv~PTVl~~--~~~~~~~eEiFGPVL~V~~y~~~dlde  936 (1208)
T PRK11905        859 TDVGPVIDAEAQANIEAHIEAMRAAGRLVHQLPLPAETEKGTFVAPTLIEI--DSISDLEREVFGPVLHVVRFKADELDR  936 (1208)
T ss_pred             CCccCccCHHHHHHHHHHHHHHHHCCCEEEEccCCCCCCCCeEEeeEEEec--CChHHhcCCccCceEEEEEeCCCCHHH
Confidence            9999999999999999999999999998887764222 4699999999973  578899999999999999997  6999


Q ss_pred             HHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCC--CCCCccCCCCCCCC-CcchHHHHHhhhhceEEE
Q 011130          408 VIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFD--AAIPFGGYKQSGQG-REKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       408 ai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~--~~~pfGG~~~SG~G-~~~g~~~l~~~~~~k~v~  484 (493)
                      +|+++|+++|||+++|||+|.+.++++++++++|+||||+..+..  ..+||||+|.||+| +.+|+++|.+|++.|+++
T Consensus       937 aI~~iN~t~yGLt~~I~S~d~~~~~~~~~~l~aGnvyIN~~~~ga~vg~qPFGG~~~SG~G~kaGGp~~L~~f~~~k~v~ 1016 (1208)
T PRK11905        937 VIDDINATGYGLTFGLHSRIDETIAHVTSRIRAGNIYVNRNIIGAVVGVQPFGGEGLSGTGPKAGGPLYLGRLVREAPTP 1016 (1208)
T ss_pred             HHHHHhcCCCCceEEEEcCCHHHHHHHHHhCCEeEEEECCCCCCCccCCCCCCCCCCCCCCCcCCCHHHHHHHhhcceee
Confidence            999999999999999999999999999999999999999865533  45799999999999 599999999999999987


Q ss_pred             Ee
Q 011130          485 TA  486 (493)
Q Consensus       485 ~~  486 (493)
                      +.
T Consensus      1017 ~~ 1018 (1208)
T PRK11905       1017 IP 1018 (1208)
T ss_pred             cc
Confidence            54


No 107
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1  (ALDH3A1, ALDH3B1,  EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=100.00  E-value=2.1e-71  Score=578.64  Aligned_cols=370  Identities=31%  Similarity=0.420  Sum_probs=337.0

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcC
Q 011130          107 RAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG  186 (493)
Q Consensus       107 ~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~  186 (493)
                      +|+++|++||+  .|+.+|..+|.++|++++++|+++.++|++++++|+|||+.++...|+..+++.++++++++++...
T Consensus         2 ~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~~~~~   79 (443)
T cd07132           2 EAVRRAREAFS--SGKTRPLEFRIQQLEALLRMLEENEDEIVEALAKDLRKPKFEAVLSEILLVKNEIKYAISNLPEWMK   79 (443)
T ss_pred             hHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            58999999999  9999999999999999999999999999999999999999998656999999999999988877643


Q ss_pred             ccCCC----CCCceeEEEeeeeeeE----------------------------------------------------eEE
Q 011130          187 LTAPA----DGPYHVQTLHEPIGVA----------------------------------------------------GVL  210 (493)
Q Consensus       187 ~~~~~----~~~~~~~~~~~PlGVv----------------------------------------------------gvv  210 (493)
                      ...+.    ......++.++|+|||                                                    |++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~~~~~~~l~~~~~~~lp~gv~  159 (443)
T cd07132          80 PEPVKKNLATLLDDVYIYKEPLGVVLIIGAWNYPLQLTLVPLVGAIAAGNCVVIKPSEVSPATAKLLAELIPKYLDKECY  159 (443)
T ss_pred             CccCCCccccCCCceEEEEecccEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEECCccCHHHHHHHHHHHHHhCCcCeE
Confidence            32211    1123568899999999                                                    999


Q ss_pred             EeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhc
Q 011130          211 NIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQ  290 (493)
Q Consensus       211 ~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~  290 (493)
                      |+|++.+.+ +..|+. ++||.|.||||+++|+.|.+.++. +++|+++|+|||||+||++|||++.|++.|++++|.++
T Consensus       160 ~vv~g~~~~-~~~l~~-~~vd~V~fTGs~~~g~~i~~~a~~-~~~~~~lElgG~~p~iV~~dADl~~aa~~i~~~~f~~~  236 (443)
T cd07132         160 PVVLGGVEE-TTELLK-QRFDYIFYTGSTSVGKIVMQAAAK-HLTPVTLELGGKSPCYVDKSCDIDVAARRIAWGKFINA  236 (443)
T ss_pred             EEEeCCHHH-HHHHHh-CCCCEEEEECChHHHHHHHHHHHh-hCCceEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhcC
Confidence            999985444 555665 589999999999999999999887 89999999999999999999999999999999999999


Q ss_pred             CCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCC
Q 011130          291 GQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKG  370 (493)
Q Consensus       291 GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g  370 (493)
                      ||.|+++++||||++++|+|+++|++.+.+++.|+| ++++++||++++.+++++.++|++     +++++||... ..|
T Consensus       237 GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~~-~~~~~~gpli~~~~~~~v~~~i~~-----a~~~~gg~~~-~~~  309 (443)
T cd07132         237 GQTCIAPDYVLCTPEVQEKFVEALKKTLKEFYGEDP-KESPDYGRIINDRHFQRLKKLLSG-----GKVAIGGQTD-EKE  309 (443)
T ss_pred             CCceeCCcEEEEcHHHHHHHHHHHHHHHHHhcCCCC-CcccccCCcCCHHHHHHHHHHHhC-----CEEEeCCccC-CCC
Confidence            999999999999999999999999999999999988 788999999999999999999974     5899998753 358


Q ss_pred             ceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC
Q 011130          371 YYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV  450 (493)
Q Consensus       371 ~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~  450 (493)
                      +|++|||+.+++++|+++++|+||||++|++|+|++|||+++|+++|||+++|||+|.+.+.++++++++|.||||++..
T Consensus       310 ~~~~Ptvl~~v~~~~~~~~eE~FgPvl~v~~~~~~~eai~~an~~~~gL~a~i~t~d~~~~~~~~~~l~~G~v~IN~~~~  389 (443)
T cd07132         310 RYIAPTVLTDVKPSDPVMQEEIFGPILPIVTVNNLDEAIEFINSREKPLALYVFSNNKKVINKILSNTSSGGVCVNDTIM  389 (443)
T ss_pred             CEEeeEEEeCCCCCChHHhccccCceeEEEEeCCHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhCCcceEEECCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998653


Q ss_pred             C--CCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeCC
Q 011130          451 F--DAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTALK  488 (493)
Q Consensus       451 ~--~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~~  488 (493)
                      .  .+.+||||+|+||+|+++|.+++++|++.|++++..+
T Consensus       390 ~~~~~~~PfGG~k~SG~G~~~g~~~l~~~~~~k~v~~~~~  429 (443)
T cd07132         390 HYTLDSLPFGGVGNSGMGAYHGKYSFDTFSHKRSCLVKSL  429 (443)
T ss_pred             ccCCCCCCCCCCCcccCCCcccHHHHHHhccccEEEEccc
Confidence            3  3679999999999999999999999999999987753


No 108
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1  (ALDH3A1, ALDH3B1,  EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar  sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=100.00  E-value=7.1e-70  Score=565.66  Aligned_cols=366  Identities=31%  Similarity=0.456  Sum_probs=334.1

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcC
Q 011130          107 RAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG  186 (493)
Q Consensus       107 ~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~  186 (493)
                      +++++|++||+  .|+.+|..+|.++|++++++|++++++|++++++|+|||+.++...|+..+++.+++++..+++...
T Consensus         2 ~~v~~a~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~~~~~Ev~~~~~~~~~~~~~~~~~~~   79 (426)
T cd07087           2 ELVARLRETFL--TGKTRSLEWRKAQLKALKRMLTENEEEIAAALYADLGKPPAEAYLTEIAVVLGEIDHALKHLKKWMK   79 (426)
T ss_pred             hHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            48999999999  9999999999999999999999999999999999999998777656999999999999987765543


Q ss_pred             cc-C--CC-CCCceeEEEeeeeeeE----------------------------------------------------eEE
Q 011130          187 LT-A--PA-DGPYHVQTLHEPIGVA----------------------------------------------------GVL  210 (493)
Q Consensus       187 ~~-~--~~-~~~~~~~~~~~PlGVv----------------------------------------------------gvv  210 (493)
                      .. .  +. ..+...+..++|+|||                                                    |++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~n~P~~~~~~~~~~aL~aGN~vvlKps~~~p~~~~~l~~~~~~~~P~gv~  159 (426)
T cd07087          80 PRRVSVPLLLQPAKAYVIPEPLGVVLIIGPWNYPLQLALAPLIGAIAAGNTVVLKPSELAPATSALLAKLIPKYFDPEAV  159 (426)
T ss_pred             CcccCCccccCCCceEEEEecCcEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCccCHHHHHHHHHHHHHhCCCCEE
Confidence            21 1  11 1234567889999998                                                    899


Q ss_pred             EeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhc
Q 011130          211 NIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQ  290 (493)
Q Consensus       211 ~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~  290 (493)
                      |+|++. .+.+..|+.|| ++.|.||||+.+|+.|++.++. ++||+++|+|||||+||++|||++.|++.+++++|.++
T Consensus       160 ~vv~g~-~~~~~~l~~~~-v~~V~ftGs~~~g~~i~~~a~~-~~~~~~lelgG~~~~iV~~dadl~~aa~~i~~~~~~~~  236 (426)
T cd07087         160 AVVEGG-VEVATALLAEP-FDHIFFTGSPAVGKIVMEAAAK-HLTPVTLELGGKSPCIVDKDANLEVAARRIAWGKFLNA  236 (426)
T ss_pred             EEEeCC-chHHHHHHhCC-CCEEEEeCChHHHHHHHHHHHh-hCCceEEeccCCCceEecCCCCHHHHHHHHHHHHHhcc
Confidence            999984 45688899998 9999999999999999999988 89999999999999999999999999999999999999


Q ss_pred             CCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCC
Q 011130          291 GQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKG  370 (493)
Q Consensus       291 GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g  370 (493)
                      ||.|+++++||||++++|+|+++|++++++++.|+| ++.+++||++++.+++++.++++++     ++++||... ..|
T Consensus       237 GQ~C~a~~rv~V~~~i~d~f~~~L~~~~~~l~~~~~-~~~~~~gpli~~~~~~~~~~~i~~a-----~v~~gg~~~-~~g  309 (426)
T cd07087         237 GQTCIAPDYVLVHESIKDELIEELKKAIKEFYGEDP-KESPDYGRIINERHFDRLASLLDDG-----KVVIGGQVD-KEE  309 (426)
T ss_pred             CCccccCCEEEEcHHHHHHHHHHHHHHHHHHcCCCC-ccCCCcCCCCCHHHHHHHHHHHhcc-----eEEeCCccC-CCC
Confidence            999999999999999999999999999999976666 5789999999999999999999864     899998653 358


Q ss_pred             ceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC
Q 011130          371 YYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV  450 (493)
Q Consensus       371 ~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~  450 (493)
                      +|++|||+.+++++|+++++|+||||++|++|+|++|+|+++|+++|||+++|||+|.+.+.++++++++|+||||+++.
T Consensus       310 ~~~~Ptvl~~~~~~~~~~~eE~fgPvl~v~~~~~~~eai~~~n~~~~gL~~~v~t~d~~~~~~~~~~l~~g~v~iN~~~~  389 (426)
T cd07087         310 RYIAPTILDDVSPDSPLMQEEIFGPILPILTYDDLDEAIEFINSRPKPLALYLFSEDKAVQERVLAETSSGGVCVNDVLL  389 (426)
T ss_pred             CEEeeEEEecCCCCCHHHhcccccceEEEEEeCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHhcCCcccEEECCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998754


Q ss_pred             --CCCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          451 --FDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       451 --~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                        ..+.+||||+|.||+|+++|.+++++|++.|+++
T Consensus       390 ~~~~~~~PfGG~k~SG~G~~~g~~~l~~~~~~k~~~  425 (426)
T cd07087         390 HAAIPNLPFGGVGNSGMGAYHGKAGFDTFSHLKSVL  425 (426)
T ss_pred             ccCCCCCCCCCCCcccCCCccCHHHHHHhccceeec
Confidence              3478999999999999999999999999999874


No 109
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=100.00  E-value=1.2e-69  Score=517.05  Aligned_cols=406  Identities=31%  Similarity=0.512  Sum_probs=377.3

Q ss_pred             CCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q 011130           77 SASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNG  156 (493)
Q Consensus        77 ~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~G  156 (493)
                      ..+.++++.+.|.||..++.+|..++.|+++-|..|++|++  .|.+.+...|.++|+.+.+.|-+|.|.+++..++|+|
T Consensus        60 ~~~~~~vqCycPatg~yLG~fp~~~~tdide~v~la~kAQk--tW~~ssF~~Rr~fL~~L~~yIi~nQdliaevacrDtG  137 (583)
T KOG2454|consen   60 QQSDKKVQCYCPATGKYLGYFPALSPTDIDERVTLARKAQK--TWAQSSFKLRRQFLRILLKYIIENQDLIAEVACRDTG  137 (583)
T ss_pred             cCCCCceEEecCCCcceeeecccCChhhHHHHHHHHHHHHh--hhhhccHHHHHHHHHHHHHHHhhchhheeeeeecccC
Confidence            34567899999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             CChhhhhhccHHHHHHHHHHHHHhhHHhcCc-cCCCC---CCceeEEEeeeeeeE-------------------------
Q 011130          157 KPFEQSAQTEVPMTTRLFRYYAGWADKIQGL-TAPAD---GPYHVQTLHEPIGVA-------------------------  207 (493)
Q Consensus       157 k~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~-~~~~~---~~~~~~~~~~PlGVv-------------------------  207 (493)
                      |+..++..+|+..+++.+.|.....++.... ..|..   .-...++.++|+||+                         
T Consensus       138 KTmvDAs~GEIlvTlEKI~Wtl~~Ger~L~P~~Rpn~~~~~yKg~~v~yePLGVI~aiVsWNYPfHN~lgPiiaAlFsGN  217 (583)
T KOG2454|consen  138 KTMVDASLGEILVTLEKITWTLSEGERWLKPESRPNGRAMLYKGSRVEYEPLGVIGAIVSWNYPFHNILGPIIAALFSGN  217 (583)
T ss_pred             chhhhhhHhHHHHHHHHhhhhhhcchhhcCCcCCCchhheeeccceEEEeecceEEEeeecCCchhhhhhHHHHHHhcCC
Confidence            9999999999999999999987655443322 22211   112357899999998                         


Q ss_pred             --------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCC
Q 011130          208 --------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLK  255 (493)
Q Consensus       208 --------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~  255 (493)
                                                      .+++++++. ++.++.|++|+.|++|.|.||..+++.|++.+++ .++
T Consensus       218 aIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~itcl-pd~a~~ltSh~g~khitFiGSqpvak~i~~~AAk-~LT  295 (583)
T KOG2454|consen  218 AIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVITCL-PDTAEALTSHSGVKHITFIGSQPVAKMIMRNAAK-TLT  295 (583)
T ss_pred             eEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheeecC-cchHhHhhcCCCcceEEEecCcHHHHHHHHhhhh-hcC
Confidence                                            678888884 6789999999999999999999999999999999 999


Q ss_pred             ceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCcccc
Q 011130          256 PVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGP  335 (493)
Q Consensus       256 pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gp  335 (493)
                      |+++|||||+++||++|+|++..+..++++.|..+||.|...+|++||+++||.|+..|.+++..++.|.|.-...+||.
T Consensus       296 Pv~lELGGKDafIi~dda~l~~v~si~mRGtfQSsGQNCiGiER~iv~k~~Yd~~i~~l~~rv~s~r~G~~~~~~vDMGA  375 (583)
T KOG2454|consen  296 PVTLELGGKDAFIICDDADLSHVASIAMRGTFQSSGQNCIGIERFIVHKDIYDAFIGQLTKRVKSVRAGPPLTGRVDMGA  375 (583)
T ss_pred             cEEEeecCcccEEEeccccHHHHHHHHHhhhhhhcCCcccceeEEEEecchHHHHHHHHHHHHHHHHcCCCccCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC----CCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHH
Q 011130          336 QIDSEQFEKILKYIRSGVDGGAKLETGGERLG----AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQR  411 (493)
Q Consensus       336 li~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~----~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~  411 (493)
                      +++..+++.++..|+||+++||+++.||.+..    ..|.|++||++.++.++|+|++||.||||+.++++++.|++|++
T Consensus       376 m~s~nrfdhLesLv~DAv~KGArl~~gGsrF~Hpkyp~g~YF~PTlLvdvt~eMKIaqeE~FgPI~~im~ak~~eh~i~l  455 (583)
T KOG2454|consen  376 MCSQNRFDHLESLVNDAVDKGARLAVGGSRFGHPKYPVGQYFPPTLLVDVTHEMKIAQEEAFGPIMPIMQAKTDEHVIKL  455 (583)
T ss_pred             hhhccchHHHHHHHHHHHhhcchhhhcccccCCCCCCcccccCCeEEEecCchhhhHhhhccccchhhhhcCChHHHHhh
Confidence            99999999999999999999999999998642    57899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCCC-CCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          412 SNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVFD-AAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       412 ~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~~-~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      +|+++|||.++||+.|..+..+++.+|++|.|.||++..+. -++||||+|.||+|+..|.+||.-.++.|+|.+.
T Consensus       456 AN~s~fgLG~sVFg~dk~~c~y~a~~lqtG~vAiNDFasfY~cQlPFGG~k~SGyGrFaG~EGLrg~Cn~Ksv~yd  531 (583)
T KOG2454|consen  456 ANDSRFGLGCSVFGGDKHRCKYIASQLQTGVVAINDFASFYMCQLPFGGVKDSGYGRFAGIEGLRGCCNVKSVAYD  531 (583)
T ss_pred             ccCCcccccceeccccHHHHHHHHhhhhccceeehhhhhhheeccccCCccCCCccccccHHHHHHHhcccceecc
Confidence            99999999999999999999999999999999999987764 6799999999999999999999999999999665


No 110
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of  endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an  important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in  metabolic pathways, or as  binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme  is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=100.00  E-value=2.2e-66  Score=542.73  Aligned_cols=375  Identities=48%  Similarity=0.791  Sum_probs=350.8

Q ss_pred             HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhc
Q 011130          106 NRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQ  185 (493)
Q Consensus       106 ~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~  185 (493)
                      ++++++|++|++  .|++++.++|.++|.++++.|.++.++|++++++|+||+..++.. |+..+++.+++++.+.+++.
T Consensus         1 ~~av~~a~~a~~--~w~~~~~~~R~~~l~~~~~~l~~~~~~l~~~~~~etG~~~~~~~~-ei~~~i~~l~~~~~~~~~~~   77 (432)
T cd07078           1 DAAVAAARAAFK--AWAALPPAERAAILRKLADLLEERREELAALETLETGKPIEEALG-EVARAADTFRYYAGLARRLH   77 (432)
T ss_pred             CHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            368999999999  999999999999999999999999999999999999999988775 99999999999998887765


Q ss_pred             CccC-CCCCCceeEEEeeeeeeE-----------------------------------------------------eEEE
Q 011130          186 GLTA-PADGPYHVQTLHEPIGVA-----------------------------------------------------GVLN  211 (493)
Q Consensus       186 ~~~~-~~~~~~~~~~~~~PlGVv-----------------------------------------------------gvv~  211 (493)
                      +... +...+...+..++|+|||                                                     |+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~vilkps~~~~~~~~~l~~~l~~ag~p~~~~~  157 (432)
T cd07078          78 GEVIPSPDPGELAIVRREPLGVVGAITPWNFPLLLAAWKLAPALAAGNTVVLKPSELTPLTALLLAELLAEAGLPPGVLN  157 (432)
T ss_pred             CccccccCCCceEEEEEeecceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHcCCCcCcEE
Confidence            5432 222345677889999998                                                     7999


Q ss_pred             eeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcC
Q 011130          212 IVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQG  291 (493)
Q Consensus       212 vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~G  291 (493)
                      ++++.+.+.+..|..|+++|.|.||||..+++.|.+.+++ +++|+++|+||+||+||++|+|++.|++.+++++|.++|
T Consensus       158 ~~~~~~~~~~~~l~~~~~i~~v~ftGs~~~~~~v~~~a~~-~~~~~~~e~gg~~~~iV~~~ad~~~aa~~i~~~~~~~~G  236 (432)
T cd07078         158 VVTGDGDEVGAALASHPRVDKISFTGSTAVGKAIMRAAAE-NLKRVTLELGGKSPLIVFDDADLDAAVKGAVFGAFGNAG  236 (432)
T ss_pred             EEecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhh-ccCcEEEecCCCCeeEECCCCCHHHHHHHHHHHHHhccC
Confidence            9998666688899999999999999999999999999998 899999999999999999999999999999999999999


Q ss_pred             CcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCC-CC
Q 011130          292 QCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGA-KG  370 (493)
Q Consensus       292 Q~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~-~g  370 (493)
                      |.|+++++||||++++|+|+++|++++.++++|+|.|+++++||++++.+++++.++|+++.++|+++++||..... .|
T Consensus       237 q~C~a~~~i~v~~~~~~~~~~~L~~~l~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~gg~~~~~~~g  316 (432)
T cd07078         237 QVCTAASRLLVHESIYDEFVERLVERVKALKVGNPLDPDTDMGPLISAAQLDRVLAYIEDAKAEGAKLLCGGKRLEGGKG  316 (432)
T ss_pred             CCccCCceEEEcHHHHHHHHHHHHHHHHccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876433 58


Q ss_pred             ceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCC
Q 011130          371 YYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDV  450 (493)
Q Consensus       371 ~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~  450 (493)
                      +|++|||+.++.++++++++|+||||++|++|++++|+|+++|+.++||+++|||+|.+.+++++.++++|+|+||+++.
T Consensus       317 ~~~~Ptv~~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~~l~~~i~t~d~~~~~~~~~~~~~g~v~iN~~~~  396 (432)
T cd07078         317 YFVPPTVLTDVDPDMPIAQEEIFGPVLPVIPFKDEEEAIELANDTEYGLAAGVFTRDLERALRVAERLEAGTVWINDYSV  396 (432)
T ss_pred             cEEccEEEecCCCCChhhhCCCcCceEEEEEeCCHHHHHHHHhCCCcCceEEEECCCHHHHHHHHHhcCcceEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             C-CCCCCccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          451 F-DAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       451 ~-~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      . .+.+||||.|.||+|+++|++++++|++.|+++
T Consensus       397 ~~~~~~pfgG~~~sg~g~~~g~~~~~~~~~~k~v~  431 (432)
T cd07078         397 GAEPSAPFGGVKQSGIGREGGPYGLEEYTEPKTVT  431 (432)
T ss_pred             CCCCCCCcCCcCcCcCCccchHHHHHHhhceEEEE
Confidence            6 788999999999999999999999999999875


No 111
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=100.00  E-value=6.9e-66  Score=539.19  Aligned_cols=362  Identities=23%  Similarity=0.328  Sum_probs=324.9

Q ss_pred             HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHh
Q 011130          105 VNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKI  184 (493)
Q Consensus       105 v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~  184 (493)
                      +++|+++|++||+  .|+++|..+|.++|++++++|+++.++|++++++|+|||..++. .|+..+++.+++++..+++.
T Consensus         1 v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gkp~~~~~-~ev~~~~~~l~~~a~~~~~~   77 (454)
T cd07129           1 VDAAAAAAAAAFE--SYRALSPARRAAFLEAIADEIEALGDELVARAHAETGLPEARLQ-GELGRTTGQLRLFADLVREG   77 (454)
T ss_pred             ChHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            4789999999999  99999999999999999999999999999999999999999887 49999999999999876643


Q ss_pred             c--CccCCC-------CCCceeEEEeeeeeeE------------------------------------------------
Q 011130          185 Q--GLTAPA-------DGPYHVQTLHEPIGVA------------------------------------------------  207 (493)
Q Consensus       185 ~--~~~~~~-------~~~~~~~~~~~PlGVv------------------------------------------------  207 (493)
                      .  +.....       ......++.++|+|||                                                
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~a~ALaaGN~VVlKps~~~p~t~~~l~~~~  157 (454)
T cd07129          78 SWLDARIDPADPDRQPLPRPDLRRMLVPLGPVAVFGASNFPLAFSVAGGDTASALAAGCPVVVKAHPAHPGTSELVARAI  157 (454)
T ss_pred             CCccccccccccccCCCCCccceEEeeccceEEEECCCCCchhhhhhhhhHHHHHHcCCeEEEEcCCCCchHHHHHHHHH
Confidence            2  111110       0122347889999998                                                


Q ss_pred             -----------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhc-CCCceeEecCCCCceEEccCC--
Q 011130          208 -----------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKS-NLKPVTLELGGKSPFIVCEDA--  273 (493)
Q Consensus       208 -----------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~-~~~pv~lelgG~~p~iV~~da--  273 (493)
                                 |++|+|++++.+.++.|+.||+|++|+||||+.+|+.|++.+++. ++||+++|+|||||+||++|+  
T Consensus       158 ~~~l~~aGlP~gvv~~v~g~~~~~~~~L~~~~~v~~V~fTGs~~~G~~i~~~aa~~~~~~p~~lElGG~n~~iV~~da~~  237 (454)
T cd07129         158 RAALRATGLPAGVFSLLQGGGREVGVALVKHPAIKAVGFTGSRRGGRALFDAAAARPEPIPFYAELGSVNPVFILPGALA  237 (454)
T ss_pred             HHHHHHhCCChhheEEeeCCcHHHHHHHhcCCCccEEEEeCChHHHHHHHHHhhccCccceeEeecCCcCcEEEeCCcch
Confidence                       899999987767889999999999999999999999999988862 589999999999999999999  


Q ss_pred             -CHHHHHHHHHHHHHhhcCCcccCCCeeEecch-hHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHH
Q 011130          274 -DVDKAAELAHYALFFNQGQCCCAGSRTFVHES-VYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRS  351 (493)
Q Consensus       274 -Dl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~-i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~  351 (493)
                       |++.|++.+++++|.|+||.|++++|||||++ ++|+|+++|+++++++++          ||++++.+.+++.++|++
T Consensus       238 ~dl~~aa~~i~~~~~~~~GQ~C~a~~rv~v~~~~i~d~f~~~l~~~~~~~~~----------g~~~~~~~~~~~~~~i~~  307 (454)
T cd07129         238 ERGEAIAQGFVGSLTLGAGQFCTNPGLVLVPAGPAGDAFIAALAEALAAAPA----------QTMLTPGIAEAYRQGVEA  307 (454)
T ss_pred             HHHHHHHHHHHHHHhcCCCCeecCCceEEEeCcccHHHHHHHHHHHHhccCC----------CCCcChHHHHHHHHHHHH
Confidence             89999999999999999999999999999999 999999999999998864          477787888888999999


Q ss_pred             HHhC-CCEEEeCCcccCCCCceeeceEEecCC---CCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCC
Q 011130          352 GVDG-GAKLETGGERLGAKGYYIKPTVFTGVK---DDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHN  427 (493)
Q Consensus       352 a~~~-ga~v~~gg~~~~~~g~~~~Ptvl~~~~---~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d  427 (493)
                      +++. |+++++||... ..|+|++|||+....   ++|.++++|+||||++|++|+|.||+|+++|++.|||+++|||+|
T Consensus       308 a~~~~ga~~l~gg~~~-~~g~~~~Ptvl~~~~~~~~~~~i~~~E~FGPv~~v~~~~~~~eai~~~n~~~~gL~a~vft~d  386 (454)
T cd07129         308 LAAAPGVRVLAGGAAA-EGGNQAAPTLFKVDAAAFLADPALQEEVFGPASLVVRYDDAAELLAVAEALEGQLTATIHGEE  386 (454)
T ss_pred             HHhcCCcEEEeCCCcC-CCCCccCCEEEEccCCccccchhhcccCCCCeEEEEEeCCHHHHHHHHhcCCCCcEEEEEccC
Confidence            9998 99999999754 468999999998665   689999999999999999999999999999999999999999999


Q ss_pred             --HHHHHHHHHhc--ceeEEEECCcCCCC---CCCCccC-CCCCCCCCc--chHHHHHhhhhc
Q 011130          428 --LDTANTLMRAL--RVGSVWINCFDVFD---AAIPFGG-YKQSGQGRE--KGSYSLSNYLQV  480 (493)
Q Consensus       428 --~~~~~~~~~~l--~~g~V~VN~~~~~~---~~~pfGG-~~~SG~G~~--~g~~~l~~~~~~  480 (493)
                        .+.+++++++|  ++|+||||+++...   +.+|||| +|.||+|++  +|.+++++|+++
T Consensus       387 ~~~~~a~~~~~~l~~~~G~v~iN~~~~~~~~~~~~pfgG~~k~sg~g~~~~~g~~~~~~~~~~  449 (454)
T cd07129         387 DDLALARELLPVLERKAGRLLFNGWPTGVEVCPAMVHGGPYPATTDPRFTSVGTAAIERFLRP  449 (454)
T ss_pred             chHHHHHHHHHHHHhhCcEEEECCCCccccccCCCCCCCCcCCCCCCccccccHHHHHHhccc
Confidence              79999999999  69999999865432   4899999 999999998  799999999987


No 112
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=100.00  E-value=1.8e-65  Score=533.92  Aligned_cols=361  Identities=22%  Similarity=0.230  Sum_probs=320.6

Q ss_pred             HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhc
Q 011130          106 NRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQ  185 (493)
Q Consensus       106 ~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~  185 (493)
                      ++||++|++||+  .|+++|.++|.++|.+++++|+++.++|++++++|+|||. ++. .|+..++..++|++..++...
T Consensus         2 ~~av~~A~~A~~--~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-~~~-~ev~~~i~~~~~~~~~~~~~~   77 (442)
T cd07084           2 ERALLAADISTK--AARRLALPKRADFLARIIQRLAAKSYDIAAGAVLVTGKGW-MFA-ENICGDQVQLRARAFVIYSYR   77 (442)
T ss_pred             hHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCch-hhh-hhhcchHHHHHHHHHHHHhcc
Confidence            679999999999  9999999999999999999999999999999999999999 555 499999999999998876532


Q ss_pred             --Cc---cCCCCCCceeEEEeeeeeeE-----------------------------------------------------
Q 011130          186 --GL---TAPADGPYHVQTLHEPIGVA-----------------------------------------------------  207 (493)
Q Consensus       186 --~~---~~~~~~~~~~~~~~~PlGVv-----------------------------------------------------  207 (493)
                        ..   ..+.......+..++|+|||                                                     
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~vvlKps~~~p~~~~~l~~~l~~ag~~P  157 (442)
T cd07084          78 IPHEPGNHLGQGLKQQSHGYRWPYGPVLVIGAFNFPLWIPLLQLAGALAMGNPVIVKPHTAVSIVMQIMVRLLHYAGLLP  157 (442)
T ss_pred             ccccccccCCCCccccceEEeecceeEEEEcCCccHhHHHHHHHHHHHHcCCeEEEECCCCchHHHHHHHHHHHHhCCCC
Confidence              21   11111124568899999999                                                     


Q ss_pred             -eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCC-CHHHHHHHHHHH
Q 011130          208 -GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDA-DVDKAAELAHYA  285 (493)
Q Consensus       208 -gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~da-Dl~~aa~~i~~~  285 (493)
                       |++++|++++. .+..|+.||++++|+||||+++|+.|++.++.   +|+++|+|||||+||++|| |+|.|++.++++
T Consensus       158 ~g~~~~v~g~~~-~~~~l~~~~~v~~V~fTGs~~~g~~i~~~a~~---~~v~lElgG~~~~iV~~dadd~~~a~~~i~~~  233 (442)
T cd07084         158 PEDVTLINGDGK-TMQALLLHPNPKMVLFTGSSRVAEKLALDAKQ---ARIYLELAGFNWKVLGPDAQAVDYVAWQCVQD  233 (442)
T ss_pred             ccceEEeeCCcH-HHHHHHcCCCCCEEEEECCHHHHHHHHHhccC---CcEEEeccCcCcEEECCChhhHHHHHHHHHHH
Confidence             77999999765 88999999999999999999999999998764   7999999999999999999 699999999999


Q ss_pred             HHhhcCCcccCCCeeEecch-hHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhC-CCEEEeCC
Q 011130          286 LFFNQGQCCCAGSRTFVHES-VYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDG-GAKLETGG  363 (493)
Q Consensus       286 ~~~~~GQ~C~a~~~v~V~~~-i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~-ga~v~~gg  363 (493)
                      +|.++||.|+++++||||++ ++|+|+++|+++++++++|     ++.+||++++    ++.++|+++++. |+++++||
T Consensus       234 ~~~~~GQ~C~a~~rl~V~~~~i~~~f~~~l~~~~~~~~~g-----~~~~gpl~~~----~~~~~i~~a~~~gga~~~~gg  304 (442)
T cd07084         234 MTACSGQKCTAQSMLFVPENWSKTPLVEKLKALLARRKLE-----DLLLGPVQTF----TTLAMIAHMENLLGSVLLFSG  304 (442)
T ss_pred             HhcccCCeecCCcEEEEeCCccHHHHHHHHHHHHHhcccC-----ccccChhhhH----HHHHHHHHHHhcCCcEEEeCC
Confidence            99999999999999999999 9999999999999999998     6789999765    456667777777 59999999


Q ss_pred             cccC------CCCceeeceEEecCCCCc---cccccccccceEEEEEeCC--HHHHHHHHHcCCCCcEEEEecCCHHHHH
Q 011130          364 ERLG------AKGYYIKPTVFTGVKDDM---LIAKDEIFGPVQSILKYKD--LDEVIQRSNASQYGLAAGVFTHNLDTAN  432 (493)
Q Consensus       364 ~~~~------~~g~~~~Ptvl~~~~~~~---~i~~~E~fgPvl~v~~~~~--~~eai~~~n~~~~gl~a~v~t~d~~~~~  432 (493)
                      ....      ..|+|++|||+.+++++|   ++++||+||||++|++|+|  ++|+|+++|+++|||+++|||+|.+.++
T Consensus       305 ~~~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~i~~eE~FGPvl~v~~~~~~~~~eai~~~n~~~~gL~~~v~t~d~~~~~  384 (442)
T cd07084         305 KELKNHSIPSIYGACVASALFVPIDEILKTYELVTEEIFGPFAIVVEYKKDQLALVLELLERMHGSLTAAIYSNDPIFLQ  384 (442)
T ss_pred             cccccCCCCCcCCcccCCeEEEecCcccccchHHheeccCceEEEEEeCCccHHHHHHHHHhCCCCeeEEEEeCCHHHHH
Confidence            7522      258999999999999987   9999999999999999999  9999999999999999999999999999


Q ss_pred             HHHHhc-ceeEEEECCc-CC-CCCCCCccC-CCCCCCCCcc-hHHHHHhhhhceEE
Q 011130          433 TLMRAL-RVGSVWINCF-DV-FDAAIPFGG-YKQSGQGREK-GSYSLSNYLQVKAV  483 (493)
Q Consensus       433 ~~~~~l-~~g~V~VN~~-~~-~~~~~pfGG-~~~SG~G~~~-g~~~l~~~~~~k~v  483 (493)
                      ++++++ ++|+||||.. +. ..+..|||| .|.||+|++. |.+++++|++...+
T Consensus       385 ~~~~~l~~~G~v~iN~~~~~~~~~~~~~gG~~k~sG~g~~~~g~~~~~~~~~~~~~  440 (442)
T cd07084         385 ELIGNLWVAGRTYAILRGRTGVAPNQNHGGGPAADPRGAGIGGPEAIKLVWRCHAE  440 (442)
T ss_pred             HHHHHHHhcCeEEECCCCCCCccccccCCCCCCCCCCCccccchHHhhheeeeeee
Confidence            999999 9999999976 33 445678877 8899999986 99999999988654


No 113
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=100.00  E-value=3.8e-64  Score=529.16  Aligned_cols=379  Identities=19%  Similarity=0.258  Sum_probs=324.4

Q ss_pred             eeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhh
Q 011130           84 PTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSA  163 (493)
Q Consensus        84 ~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~  163 (493)
                      .-+||+|++++++++.++.   +++|++|++||+  .|+++++.+|.++|++++++|+++.++|++++++|+|||+.++.
T Consensus        68 ~e~~P~t~~~~~~~~~~~~---~~av~aA~~A~~--~W~~~~~~~R~~vL~~~a~~l~~~~~elA~~~~~etGk~~~~a~  142 (551)
T TIGR02288        68 GERSPYGVELGVTYPQCDG---DALLDAAHAALP--GWRDAGARARAGVCLEILQRLNARSFEIAHAVMHTTGQAFMMAF  142 (551)
T ss_pred             cccCCCCCCEEEEEcCCCH---HHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCCCHHHHH
Confidence            3469999999999999986   899999999999  99999999999999999999999999999999999999998874


Q ss_pred             h-c---cHHHHHHHHHHHHHhhHHhcCccC---CCC-CC---ceeEEEeeeeeeE-------------------------
Q 011130          164 Q-T---EVPMTTRLFRYYAGWADKIQGLTA---PAD-GP---YHVQTLHEPIGVA-------------------------  207 (493)
Q Consensus       164 ~-~---Ev~~~~~~l~~~a~~~~~~~~~~~---~~~-~~---~~~~~~~~PlGVv-------------------------  207 (493)
                      . +   ++...++.++|+++.+.++.+...   +.. .+   ...+..++|+|||                         
T Consensus       143 e~gkp~~~~r~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~P~GVv~vI~PwNfP~~~~~~~l~~ALaaGN  222 (551)
T TIGR02288       143 QAGGPHAQDRGLEAVAYAYREMSRIPETAVWEKPQGKNDPLKLKKRFTIVPRGIALVIGCSTFPTWNTYPGLFASLATGN  222 (551)
T ss_pred             hccChHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCcccccceEEEEecCeEEEEcCcccHHHHHHHHHHHHHHcCC
Confidence            2 1   677889999999988877766533   211 11   1223478999998                         


Q ss_pred             --------------------------------eEEEeeeCC-ccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCC
Q 011130          208 --------------------------------GVLNIVSGY-GPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNL  254 (493)
Q Consensus       208 --------------------------------gvv~vv~~~-~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~  254 (493)
                                                      |++|+|++. +.++++.|+.||+|++|.||||+++|+.|++.++.   
T Consensus       223 ~VVlKPs~~tpl~~~~~~~~l~e~l~eAGlP~gvv~lv~g~~g~~~~~~L~~~p~v~~I~FTGSt~~G~~I~~~aa~---  299 (551)
T TIGR02288       223 PVLVKPHPGAILPLALTVQVAREVLGEAGFDPNLVTLAAFDPGHEAAQRLATDPAVRIIDFTGSNAFGQWLEQNARQ---  299 (551)
T ss_pred             eEEEECCcccchhHHHHHHHHHHHHHHcCcChhHEEEecCCCcHHHHHHHHhCCCccEEEEECCHHHHHHHHHhccc---
Confidence                                            899999985 67789999999999999999999999999998764   


Q ss_pred             CceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecch---------hHHHHHHHHHHHHhhcccCC
Q 011130          255 KPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHES---------VYDQFVEKANALAMKRVVGD  325 (493)
Q Consensus       255 ~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~---------i~d~f~~~l~~~~~~~~vg~  325 (493)
                      +++++|||||||+||++|+|+|.+++.+++++|.|+||.|++++|||||++         +||+|+++|++++.++ +||
T Consensus       300 ~~v~lElGGknp~IV~~dADld~aa~~i~~~~f~~sGQ~Cta~~ri~V~~~~i~~~~g~~i~def~~~L~~~~~~l-vGd  378 (551)
T TIGR02288       300 AQVYTEKAGVNTVIIESTDDYKAMLRNLAFSLSLYSGQMCTTTQAILVPRDGIRTDQGRKSYDEVAADLATAIDGL-LGD  378 (551)
T ss_pred             CcEEeecCCcCeEEEcCCCCHHHHHHHHHHHHHhhCCCCCCCCCEEEEeccccccccchhHHHHHHHHHHHHHHHh-cCC
Confidence            799999999999999999999999999999999999999999999999999         7999999999999999 999


Q ss_pred             CCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC---CCC-ceeeceEEecCCCCccccccccccceEEEEE
Q 011130          326 PFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG---AKG-YYIKPTVFTGVKDDMLIAKDEIFGPVQSILK  401 (493)
Q Consensus       326 p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~---~~g-~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~  401 (493)
                      |.++.+++||++++.+++++    +++++.| ++++||....   ..| +|++|||+....++|++++||+||||++|++
T Consensus       379 p~~~~~~~Gplis~~~~~ri----~~a~~~G-~v~~gG~~~~~~~~~g~~~~~Ptvl~~~~~d~~i~~eE~FGPVl~V~~  453 (551)
T TIGR02288       379 PARATAVLGAIQSPDTLARI----AEARALG-EVLLASTKIEHPEFPGARVRTPLLLKCDAADEAAYMQERFGPIAFVVA  453 (551)
T ss_pred             cccccccccCcCCHHHHHHH----HHHHhCC-CEEEcCccCCCCCCCCCEEeccEEEEcCCCCCHHHhCCCcCCEEEEEE
Confidence            99999999999999999995    5666778 6666665321   135 6889999954445999999999999999999


Q ss_pred             eCCHHHHHHHHHcC--CCC-cEEEEecCCHHHHHHHHHhc----------ceeEEEECCcCCCCCCCCccCCCCCCCC-C
Q 011130          402 YKDLDEVIQRSNAS--QYG-LAAGVFTHNLDTANTLMRAL----------RVGSVWINCFDVFDAAIPFGGYKQSGQG-R  467 (493)
Q Consensus       402 ~~~~~eai~~~n~~--~~g-l~a~v~t~d~~~~~~~~~~l----------~~g~V~VN~~~~~~~~~pfGG~~~SG~G-~  467 (493)
                      |+|.||||+++|++  +|| |+++|||+|.+.++++.+++          ++|.|+||..      .||++.+.||.. .
T Consensus       454 ~~d~deAi~~aN~~~~~~G~Lta~VfT~d~~~~~~~~~~~~~~~~~l~iN~~G~v~vN~~------~~~~~~~~sg~n~~  527 (551)
T TIGR02288       454 VDDGAHAVELARRSVREKGAMTVGAYTTDPEVVDAVQEAAWDAAVALSLNLTGGVFVNQS------AAFSDFHGTGGNPA  527 (551)
T ss_pred             ECCHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHHHHHHhccCeeecCCceEEEccC------CCCCCCCCCCCCCc
Confidence            99999999999998  566 99999999999999999999          7888888874      357777777754 3


Q ss_pred             cchHHHHHhhhhceE
Q 011130          468 EKGSYSLSNYLQVKA  482 (493)
Q Consensus       468 ~~g~~~l~~~~~~k~  482 (493)
                      .+..++--.|...|-
T Consensus       528 a~~~~~~~~~~~~r~  542 (551)
T TIGR02288       528 ANASLSDGAFVANRF  542 (551)
T ss_pred             cCCcccchhhhhcce
Confidence            334444445555443


No 114
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ  (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system.  This CD is limited to bacterial monofunctional enzymes.
Probab=100.00  E-value=5.8e-64  Score=529.01  Aligned_cols=394  Identities=18%  Similarity=0.223  Sum_probs=340.5

Q ss_pred             CCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q 011130           77 SASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNG  156 (493)
Q Consensus        77 ~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~G  156 (493)
                      +.++...+++||+|++++++++.+   |++++|++|++|++  .|++++..+|.++|++++++|.+++++|++++++|+|
T Consensus        61 ~~~~~~~~~~~P~~~~l~~~~~~a---dv~~ai~aA~~A~~--~W~~~~~~~R~~il~~~a~~l~~~~~ela~a~~~e~G  135 (549)
T cd07127          61 GASGWVGGEVSPYGVELGVTYPQC---DPDALLAAARAAMP--GWRDAGARARAGVCLEILQRLNARSFEMAHAVMHTTG  135 (549)
T ss_pred             CCCCCeeeeECCCCCcEEEEEchH---HHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHC
Confidence            456788999999999999999887   89999999999999  9999999999999999999999999999999999999


Q ss_pred             CChhhhhhc----cHHHHHHHHHHHHHhhHHhcCccCC---CCC----CceeEEEeeeeeeE------------------
Q 011130          157 KPFEQSAQT----EVPMTTRLFRYYAGWADKIQGLTAP---ADG----PYHVQTLHEPIGVA------------------  207 (493)
Q Consensus       157 k~~~~a~~~----Ev~~~~~~l~~~a~~~~~~~~~~~~---~~~----~~~~~~~~~PlGVv------------------  207 (493)
                      |++.++...    |+..+++.++|+++.+.++.+....   ...    .......++|+||+                  
T Consensus       136 k~~~~a~qa~~~~evd~a~e~~~~a~~~~~~~~~~~~w~~~~~~~~~l~~~k~~~~~P~GVv~vI~p~nfP~~~~~~~i~  215 (549)
T cd07127         136 QAFMMAFQAGGPHAQDRGLEAVAYAWREMSRIPPTAEWEKPQGKHDPLAMEKTFTVVPRGVALVIGCSTFPTWNGYPGLF  215 (549)
T ss_pred             CCHHHHHhcccHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcccccccceeEEecccEEEEEeCcCChHHHHHHHHH
Confidence            999877632    6999999999999988776654221   110    01123477999998                  


Q ss_pred             ---------------------------------------eEEEeeeCC-ccchhhhhhccccccEEEEecCcHHHHHHHH
Q 011130          208 ---------------------------------------GVLNIVSGY-GPTAGAALASHMEVDKLAFTGSTTTGKIVLQ  247 (493)
Q Consensus       208 ---------------------------------------gvv~vv~~~-~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~  247 (493)
                                                             |+||+|++. +.++++.|+.||+|++|.||||+.+|+.|++
T Consensus       216 ~ALaaGN~VVvKPs~~a~ls~~~~~~~i~~~l~eAGlP~gvv~~v~g~~~~~~~~~L~~~p~v~~I~FTGS~~~G~~i~~  295 (549)
T cd07127         216 ASLATGNPVIVKPHPAAILPLAITVQVAREVLAEAGFDPNLVTLAADTPEEPIAQTLATRPEVRIIDFTGSNAFGDWLEA  295 (549)
T ss_pred             HHHhcCCeEEEECCcccchhHHHHHHHHHHHHHHcCcCcccEEEEeCCCcHHHHHHHHhCCCCCEEEEECCHHHHHHHHH
Confidence                                                   899999975 4678999999999999999999999999999


Q ss_pred             HHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecch---------hHHHHHHHHHHHH
Q 011130          248 LAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHES---------VYDQFVEKANALA  318 (493)
Q Consensus       248 ~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~---------i~d~f~~~l~~~~  318 (493)
                      .++.   +++++|+|||||+||++|+|++.+++.+++++|.++||.|++++|||||++         +||+|+++|++++
T Consensus       296 ~a~~---~~v~~ElGGkn~~IV~~dADl~~aa~~i~~~~f~~sGQ~C~a~~ri~V~~s~i~~~~g~~i~d~f~~~L~~~~  372 (549)
T cd07127         296 NARQ---AQVYTEKAGVNTVVVDSTDDLKAMLRNLAFSLSLYSGQMCTTPQNIYVPRDGIQTDDGRKSFDEVAADLAAAI  372 (549)
T ss_pred             Hhcc---CcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHccCCCCCCCCCEEEEECCccccccchhHHHHHHHHHHHHH
Confidence            8864   799999999999999999999999999999999999999999999999999         8999999999999


Q ss_pred             hhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccC---CCC-ceeeceEEecCCCCcccccccccc
Q 011130          319 MKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLG---AKG-YYIKPTVFTGVKDDMLIAKDEIFG  394 (493)
Q Consensus       319 ~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~---~~g-~~~~Ptvl~~~~~~~~i~~~E~fg  394 (493)
                      +++ +|||.+..+.+||++++.+++++.+    +++.|+ +++||....   ..| +|++|||+....++|++++||+||
T Consensus       373 ~~l-~Gdp~~~~~~~Gpli~~~~~~ri~~----a~~~g~-vl~gg~~~~~~~~~g~~~~~Ptvl~~~~~d~~i~~eE~FG  446 (549)
T cd07127         373 DGL-LADPARAAALLGAIQSPDTLARIAE----ARQLGE-VLLASEAVAHPEFPDARVRTPLLLKLDASDEAAYAEERFG  446 (549)
T ss_pred             HHh-cCCccccccccCCcCCHHHHHHHHH----HHhCCC-EEEcCCcCCCcCCCCceEEeCEEEEeCCCCCHHHcCCCcC
Confidence            999 9999999999999999999999865    445565 778876432   134 566999999888999999999999


Q ss_pred             ceEEEEEeCCHHHHHHHHHcCC--C-CcEEEEecCCHHHHHHHHHhc-cee-EEEECCcCCCCCCC--CccCCCCCCCC-
Q 011130          395 PVQSILKYKDLDEVIQRSNASQ--Y-GLAAGVFTHNLDTANTLMRAL-RVG-SVWINCFDVFDAAI--PFGGYKQSGQG-  466 (493)
Q Consensus       395 Pvl~v~~~~~~~eai~~~n~~~--~-gl~a~v~t~d~~~~~~~~~~l-~~g-~V~VN~~~~~~~~~--pfGG~~~SG~G-  466 (493)
                      ||++|++|+|.+|+|+++|++.  + ||+++|||+|.+.++++.+++ ++| +++||+.......+  ||||++.||.. 
T Consensus       447 PVl~V~~~~d~~eai~~an~~~~~~ggLt~sVfs~D~~~~~~~~~~~~~~~~~~~iN~tg~v~~~q~~~Fg~~~~sg~n~  526 (549)
T cd07127         447 PIAFVVATDSTDHSIELARESVREHGAMTVGVYSTDPEVVERVQEAALDAGVALSINLTGGVFVNQSAAFSDFHGTGANP  526 (549)
T ss_pred             ceEEEEEeCCHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHHHHhcCcEEEcCCceEEEecCcCCCCCCCCCCCc
Confidence            9999999999999999999973  4 699999999999999999995 555 99999654444444  59999999976 


Q ss_pred             CcchHHHHHhhhhceEEE
Q 011130          467 REKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       467 ~~~g~~~l~~~~~~k~v~  484 (493)
                      ..+..+..-.|...|-.+
T Consensus       527 ~a~~~~~~~~fv~~r~~~  544 (549)
T cd07127         527 AANAALTDGAFVANRFRV  544 (549)
T ss_pred             ccccccchhhhhhcceEE
Confidence            455666666777665433


No 115
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=100.00  E-value=1.5e-64  Score=486.98  Aligned_cols=371  Identities=27%  Similarity=0.397  Sum_probs=333.9

Q ss_pred             HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHh
Q 011130          105 VNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKI  184 (493)
Q Consensus       105 v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~  184 (493)
                      +++.++++|.+|.+|  +.-|.+.|.+.|+++...+++|.++|.+++..|.+|+..++...|+...++.++++....++.
T Consensus         4 ~~~~v~~~R~~F~sG--rtr~~efR~~QL~~L~r~i~e~e~~i~~Al~~DL~k~~~es~~~Ev~~~~~~i~~~l~~L~~w   81 (477)
T KOG2456|consen    4 ISETVRRLRLAFSSG--RTRPLEFRKQQLEALYRMIQENEKEIIEALAADLHKPELESYLNEVGYVLNEIRYALENLPEW   81 (477)
T ss_pred             HHHHHHHHHHHHhcC--CcCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            556699999999954  888999999999999999999999999999999999999988889999988888877554443


Q ss_pred             c----CccCCCCCCceeEEEeeeeeeE----------------------------------------------------e
Q 011130          185 Q----GLTAPADGPYHVQTLHEPIGVA----------------------------------------------------G  208 (493)
Q Consensus       185 ~----~~~~~~~~~~~~~~~~~PlGVv----------------------------------------------------g  208 (493)
                      .    ............+++.+|+|||                                                    +
T Consensus        82 v~~~~v~~~~~t~~dk~~I~~~p~GvVLiI~~wNyP~~L~l~PligAiAAGN~VVlKPSEls~n~a~~lakllp~Yld~~  161 (477)
T KOG2456|consen   82 VKPEPVKKSFLTFLDKAYIEKEPLGVVLIIGPWNYPLNLTLVPLIGAIAAGNAVVLKPSELSPNTAKLLAKLLPQYLDQD  161 (477)
T ss_pred             ccccccCcccccccCceeEEecCCceEEEEccCCCcceeehhhhhhhhhcCCEEEechhhcChhHHHHHHHHHHHhcCcc
Confidence            3    2222233345678999999999                                                    8


Q ss_pred             EEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHh
Q 011130          209 VLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFF  288 (493)
Q Consensus       209 vv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~  288 (493)
                      .+.||.|.-+++++ |..| ++|+|+||||+.+|+.|+.++++ +++||+||||||+|++|++|+|++-+++.|+++++.
T Consensus       162 ~~~VV~Ggv~ETt~-LL~~-rfD~IfyTGsp~VgkIim~aAaK-hLTPvtLELGGKsP~~vd~~~d~~ia~~RI~~gk~~  238 (477)
T KOG2456|consen  162 LIRVVNGGVPETTE-LLKQ-RFDHIFYTGSPRVGKIIMAAAAK-HLTPVTLELGGKSPCYVDKNCDLKIAARRIAWGKWM  238 (477)
T ss_pred             eEEEecCCCchHHH-HHHh-hccEEEecCCchHHHHHHHHHHh-cCCcEEEEcCCCCCeeecCCcCHHHHHHHHHHHhhc
Confidence            89999995555554 5555 89999999999999999999999 999999999999999999999999999999999999


Q ss_pred             hcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCC
Q 011130          289 NQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGA  368 (493)
Q Consensus       289 ~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~  368 (493)
                      |+||.|.++++|+++.+++.+|+++++..++++ +|+..+++.+++-+|+..+++|+...+++-    .+|+.||..+. 
T Consensus       239 N~GQtCvapDYiL~~k~~~~kli~alk~~l~eF-YG~n~~eS~d~sRiIn~~hf~Rl~~ll~~~----~kv~~Gg~~d~-  312 (477)
T KOG2456|consen  239 NSGQTCVAPDYILCSKSIQPKLIDALKSTLKEF-YGENPKESKDLSRIINQRHFQRLSALLDET----GKVAIGGESDE-  312 (477)
T ss_pred             cCCCeeccCCeEEecHhhhHHHHHHHHHHHHHH-hCCCccccccHHHHhhHHHHHHHHHHhcCC----CceecCCccch-
Confidence            999999999999999999999999999998886 788888999999999999999999998742    68999998644 


Q ss_pred             CCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCc
Q 011130          369 KGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCF  448 (493)
Q Consensus       369 ~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~  448 (493)
                      ...|++|||+.+++.++++|+||+||||++|+.+.+++|+|+.||+.+-+|++|+||+|.+...++..++.+|.|.+|+.
T Consensus       313 ~d~~I~PTIL~DV~~~~p~M~eEIFGPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~n~~~vkr~l~~tsSGgvt~ND~  392 (477)
T KOG2456|consen  313 SDRYIAPTILLDVPEDSPVMQEEIFGPILPIITVQSLDEAINFINEREKPLALYIFSNNEKLVKRFLTETSSGGVTVNDV  392 (477)
T ss_pred             hhcccCCeEEecCCCCChhhhhhhccCccceeEhhhHHHHHHHHhcCCCceEEEEecCCHHHHHHHHHhccCCCeeecce
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999984


Q ss_pred             --CCCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEe
Q 011130          449 --DVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       449 --~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                        +..-..+||||+|+||+|++||.++++.|++.|++..+
T Consensus       393 i~H~~~~~lPFGGVG~SGmG~YhGK~sFdTFSH~k~~l~r  432 (477)
T KOG2456|consen  393 IMHVTLDSLPFGGVGESGMGRYHGKFSFDTFSHEKSCLLR  432 (477)
T ss_pred             EEEEEeeccCcCCcCccccccccccccccccccchhhhhc
Confidence              33457899999999999999999999999999998765


No 116
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA.  This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium.  Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=100.00  E-value=2.4e-63  Score=514.32  Aligned_cols=352  Identities=21%  Similarity=0.222  Sum_probs=300.7

Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhh
Q 011130          102 AEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWA  181 (493)
Q Consensus       102 ~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~  181 (493)
                      -+|+++|+++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||..++.       ++.+++++...
T Consensus         3 ~~~v~~av~~A~~A~~--~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~~~~-------~~~~~~~~~~~   73 (429)
T cd07121           3 FATVDDAVAAAKAAQK--QYRKCTLADREKIIEAIREALLSNAEELAEMAVEETGMGRVEDK-------IAKNHLAAEKT   73 (429)
T ss_pred             hhhHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-------HHHHHHHHHhc
Confidence            4789999999999999  99999999999999999999999999999999999999987653       34566665422


Q ss_pred             HHhcCc-cC-CCCCCceeEEEeeeeeeE----------------------------------------------------
Q 011130          182 DKIQGL-TA-PADGPYHVQTLHEPIGVA----------------------------------------------------  207 (493)
Q Consensus       182 ~~~~~~-~~-~~~~~~~~~~~~~PlGVv----------------------------------------------------  207 (493)
                      ...... .. ........++.++|+|||                                                    
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKpse~tp~t~~~l~~l~~~~~~~  153 (429)
T cd07121          74 PGTEDLTTTAWSGDNGLTLVEYAPFGVIGAITPSTNPTETIINNSISMLAAGNAVVFNPHPGAKKVSAYAVELINKAIAE  153 (429)
T ss_pred             CcccccccccccCCCcceEEEEcccceEEEEccCCCchhHHHHHHHHHHHcCCCEEEECCccchhHHHHHHHHHHHHHHH
Confidence            111100 00 011223457888999999                                                    


Q ss_pred             -----eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHH
Q 011130          208 -----GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELA  282 (493)
Q Consensus       208 -----gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i  282 (493)
                           |++|+|++++.+.++.|+.||+||+|+||||+.+|+.|++.     .||+++|+|||||+||++|||+|.|++.|
T Consensus       154 aGlP~gvv~~v~g~~~~~~~~L~~~~~v~~I~fTGs~~~g~~v~~~-----~k~~~lelGGk~p~iV~~dADld~Aa~~i  228 (429)
T cd07121         154 AGGPDNLVVTVEEPTIETTNELMAHPDINLLVVTGGPAVVKAALSS-----GKKAIGAGAGNPPVVVDETADIEKAARDI  228 (429)
T ss_pred             cCCCcceEEEecCCChHHHHHHHcCCCccEEEeeCCHHHHHHHHhC-----CCceEeecCCCceEEEecCCCHHHHHHHH
Confidence                 88999998777788999999999999999999999999873     48999999999999999999999999999


Q ss_pred             HHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhC--CCEEE
Q 011130          283 HYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDG--GAKLE  360 (493)
Q Consensus       283 ~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~--ga~v~  360 (493)
                      ++++|+|+||.|++++|||||+++||+|+++|++. .              .++++..+++++.++|+++.+.  |++++
T Consensus       229 ~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~L~~~-~--------------~~~i~~~~~~~v~~~i~~a~~~~~ga~~~  293 (429)
T cd07121         229 VQGASFDNNLPCIAEKEVIAVDSVADYLIAAMQRN-G--------------AYVLNDEQAEQLLEVVLLTNKGATPNKKW  293 (429)
T ss_pred             HhcccccCCCCCCccceEEEeHHHHHHHHHHHHHC-C--------------CEEcCHHHHHHHHHhhcccCCCccccccc
Confidence            99999999999999999999999999999999885 1              2478999999999999998864  79999


Q ss_pred             eCCcc---cCCCCceee---ceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCc--EEEEecCCHHHHH
Q 011130          361 TGGER---LGAKGYYIK---PTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGL--AAGVFTHNLDTAN  432 (493)
Q Consensus       361 ~gg~~---~~~~g~~~~---Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl--~a~v~t~d~~~~~  432 (493)
                      +||..   ....|+|++   |||+.+++++|+++++|+||||++|++|+|+||||+++|+++|||  +++|||+|.+.++
T Consensus       294 ~gg~~~~~~~~~G~~~~~~~ptil~~v~~~~~i~~eE~FgPVl~v~~~~~~~eAi~~an~~~~GLghsa~I~t~d~~~a~  373 (429)
T cd07121         294 VGKDASKILKAAGIEVPADIRLIIVETDKDHPFVVEEQMMPILPVVRVKNFDEAIELAVELEHGNRHTAIIHSKNVENLT  373 (429)
T ss_pred             cCcCHHHHHHHcCCCCCCCCeEEEEecCCCCCccccccccceEEEEEeCCHHHHHHHHHhhccCCCceEEEecCCHHHHH
Confidence            98853   112478877   499999999999999999999999999999999999999999998  9999999999999


Q ss_pred             HHHHhcceeEEEECCcCCCCCCCCccCCCCCCC--CCcc--hHHHHHhhhhceEEE
Q 011130          433 TLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQ--GREK--GSYSLSNYLQVKAVV  484 (493)
Q Consensus       433 ~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~--G~~~--g~~~l~~~~~~k~v~  484 (493)
                      ++++++++|+||||+++.  +.+||||+|+|++  |..-  |.-+-+.||+.|..+
T Consensus       374 ~~a~~l~aG~v~iN~~~~--~~~p~gG~k~s~~~~~~~~~~~~~~~~~~~~~~~~~  427 (429)
T cd07121         374 KMARAMQTTIFVKNGPSY--AGLGVGGEGYTTFTIAGPTGEGLTSARTFTRRRRCV  427 (429)
T ss_pred             HHHhhCCceEEEEcCCCc--CccccCCCccceEEecCCcCcCccChhhhheeeeec
Confidence            999999999999998644  6799999999998  5333  334455666655443


No 117
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=100.00  E-value=6.6e-62  Score=503.43  Aligned_cols=355  Identities=17%  Similarity=0.215  Sum_probs=295.8

Q ss_pred             HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHH--HHHHHHHhhH
Q 011130          105 VNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTR--LFRYYAGWAD  182 (493)
Q Consensus       105 v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~--~l~~~a~~~~  182 (493)
                      +++|+++|++||+  .|+++|+.+|.++|++++++|++|+++|+++++.|+|||+.+++. ++.....  .+++++.   
T Consensus         1 ~~~Ai~~A~~A~~--~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~ea~~-~~~~~~~~~~~~~~~~---   74 (439)
T cd07081           1 LDDAVAAAKVAQQ--GLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAVSETGMGRVEDKV-IKNHFAAEYIYNVYKD---   74 (439)
T ss_pred             CHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH-HHHHHHHHHHHHHHhc---
Confidence            4789999999999  999999999999999999999999999999999999999998874 5544333  2333332   


Q ss_pred             HhcCccCCCCCCceeEEEeeeeeeE-------------------------------------------------------
Q 011130          183 KIQGLTAPADGPYHVQTLHEPIGVA-------------------------------------------------------  207 (493)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~PlGVv-------------------------------------------------------  207 (493)
                      ...+...+...+...++.++|+|||                                                       
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~l~~~~l~~aG~  154 (439)
T cd07081          75 EKTCGVLTGDENGGTLIIAEPIGVVASITPSTNPTSTVIFKSLISLKTRNSIIFSPHPRAKKVTQRAATLLLQAAVAAGA  154 (439)
T ss_pred             cccCceecCCCCCceEEEEecceEEEEECCCcchHHHHHHHHHHHHhcCCeEEEECCccchHHHHHHHHHHHHHHHHcCC
Confidence            2222222332334568899999999                                                       


Q ss_pred             --eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHH
Q 011130          208 --GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYA  285 (493)
Q Consensus       208 --gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~  285 (493)
                        |++|+|++.+.+.++.|+.||+|++|.||||+.+    ++.+++ ++||+++|+|||+|+||++|||+|.|++.++++
T Consensus       155 P~gvv~~v~g~~~~~g~~L~~~~~V~~V~FTGs~~v----~~~aa~-~~k~~~lElGGk~p~IV~~dADl~~Aa~~iv~~  229 (439)
T cd07081         155 PENLIGWIDNPSIELAQRLMKFPGIGLLLATGGPAV----VKAAYS-SGKPAIGVGAGNTPVVIDETADIKRAVQSIVKS  229 (439)
T ss_pred             ChhhEEEEcCCCHHHHHHHHcCCCCCEEEEECCHHH----HHHHHh-cCCCEEEEcCCCCeEEEcCCCCHHHHHHHHHHH
Confidence              8999999877778999999999999999999984    555666 789999999999999999999999999999999


Q ss_pred             HHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCc-
Q 011130          286 LFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGE-  364 (493)
Q Consensus       286 ~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~-  364 (493)
                      +|+++||.|++.+|||||+++||+|+++|++++               ||+++..+++++.++|+++.+.|++++.|+. 
T Consensus       230 ~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~---------------gpli~~~~~~~v~~~i~~a~~~Ga~~~gg~~~  294 (439)
T cd07081         230 KTFDNGVICASEQSVIVVDSVYDEVMRLFEGQG---------------AYKLTAEELQQVQPVILKNGDVNRDIVGQDAY  294 (439)
T ss_pred             HhcCCCCCCCCCCEEEEcHHHHHHHHHHHHHcC---------------CccCCHHHHHHHHHHHHhcCCcCCcccCCCHH
Confidence            999999999999999999999999999998862               8999999999999999999999998754432 


Q ss_pred             c-cCCCCceeece---EEecCC--CCccccccccccceEEEEEeCCHHHHHHHHHcC----CCCcEEEEecCC---HHHH
Q 011130          365 R-LGAKGYYIKPT---VFTGVK--DDMLIAKDEIFGPVQSILKYKDLDEVIQRSNAS----QYGLAAGVFTHN---LDTA  431 (493)
Q Consensus       365 ~-~~~~g~~~~Pt---vl~~~~--~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~----~~gl~a~v~t~d---~~~~  431 (493)
                      . ....|+|++||   ++.++.  ++|.+++||+||||++|++|+|+||||+++|++    +|||+++|||+|   .+++
T Consensus       295 ~~~~~~G~~~~pt~~~i~~~~~~~~~~~i~~eE~FGPVl~v~~~~~~dEAi~~aN~~~n~~~~GLsa~V~T~d~~~~~~a  374 (439)
T cd07081         295 KIAAAAGLKVPQETRILIGEVTSLAEHEPFAHEKLSPVLAMYRAANFADADAKALALKLEGGCGHTSAMYSDNIKAIENM  374 (439)
T ss_pred             HHHHHcCCccCCCceEEEEecCCCCCCchhhhCccCceEEEEEcCCHHHHHHHHHHHhhccCCCceEEEECCCcchHHHH
Confidence            1 11358899998   998888  999999999999999999999999999999965    799999999999   9999


Q ss_pred             HHHHHhcceeEEEECCcCCCC---CCCCccCCCCC--CCCCcchH-----HHHHhhhhceEEEE
Q 011130          432 NTLMRALRVGSVWINCFDVFD---AAIPFGGYKQS--GQGREKGS-----YSLSNYLQVKAVVT  485 (493)
Q Consensus       432 ~~~~~~l~~g~V~VN~~~~~~---~~~pfGG~~~S--G~G~~~g~-----~~l~~~~~~k~v~~  485 (493)
                      +++++++++|.||||.+..+.   -.--|||.+.+  |.|..+|.     -+..+|++.|.|.+
T Consensus       375 ~~~a~~l~~G~V~iN~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (439)
T cd07081         375 NQFANAMKTSRFVKNGPCSQGGLGDLYNFRGWPSMTLGCGTWGGNSVSENVGPKHLVNLKTVAL  438 (439)
T ss_pred             HHHHhhCCceEEEEeCCccccccccccCCCCCeeEeeecCCCCCCCcCCCCChHhhheeeeeec
Confidence            999999999999999765322   22346565544  22332222     14667788777654


No 118
>KOG2455 consensus Delta-1-pyrroline-5-carboxylate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00  E-value=1.1e-61  Score=469.67  Aligned_cols=419  Identities=25%  Similarity=0.376  Sum_probs=376.2

Q ss_pred             CccccceeCCEeeeCCCCCeeeeecCCC-CCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHH
Q 011130           63 VDYTQLLINGQFVDSASGKTFPTLDPRT-GDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLE  141 (493)
Q Consensus        63 ~~~~~~~I~G~~~~~~~~~~~~v~~P~t-g~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~  141 (493)
                      ....|+.|||+.+.  +...+.+.+|++ +.++++|..++.+++++||++|.+|++  .|..+|..+|.+|++|.|++|.
T Consensus        57 ~~evP~vIg~~~v~--t~~~q~q~~P~~hq~~lA~~~yA~~k~ie~AIkaAl~a~~--~W~~~PiadR~aI~lkAAdlis  132 (561)
T KOG2455|consen   57 PLEVPLVIGDKEVY--TNDEQYQVCPHNHQHVLAKVYYATKKQIEKAIKAALSAQK--TWELVPIADRLAIFLKAADLIS  132 (561)
T ss_pred             ceeccEEECCeeee--cCCcccccCCchhhhhhhheeeccHHHHHHHHHHHHhhcC--ccccCcHHHHHHHHHHHHHHhc
Confidence            34568999999997  445578889986 789999999999999999999999998  9999999999999999999999


Q ss_pred             -HhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCC-CCCceeEEEeeee-eeE-----------
Q 011130          142 -RHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPA-DGPYHVQTLHEPI-GVA-----------  207 (493)
Q Consensus       142 -~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~-~~~~~~~~~~~Pl-GVv-----------  207 (493)
                       +++-+|....++.+||...+|..+-..+.++++|+.+..+.++....++. ..+......++|+ |.|           
T Consensus       133 tkyr~~l~aatMlgqgKt~~qAeiDa~~eLidf~R~na~ya~eL~~~qpi~~~~~t~ns~~yRpleGFVaAisPFnftAI  212 (561)
T KOG2455|consen  133 TKYRYDLLAATMLGQGKTAIQAEIDAAAELIDFFRFNAKYASELYAQQPISQTKGTWNSMEYRPLEGFVAAISPFNFTAI  212 (561)
T ss_pred             chHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccCCCCcceeeccccceeEEecccceeee
Confidence             88999999999999999999876447788999999999888877665443 3334444555555 444           


Q ss_pred             -----------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHH
Q 011130          208 -----------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVL  246 (493)
Q Consensus       208 -----------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~  246 (493)
                                                               |++|+|+++++..++.+..+|.+..+-||||+.+-+.++
T Consensus       213 ~gnLa~aPaLMGN~VLwkPS~ta~lssYii~~il~EAGlP~GvinFvPad~~~f~dtita~~hfaglnftgS~~~fk~lw  292 (561)
T KOG2455|consen  213 GGNLAGAPALMGNVVLWKPSDTAALSSYIIYRILREAGLPPGVINFVPADGPLFGDTITASPHFAGLNFTGSVPTFKHLW  292 (561)
T ss_pred             ccccccChhhhcceeeecccchhHHHHHHHHHHHHHcCCCccceeeccCCCCeecceeccCcccceeeeecccHHHHHHH
Confidence                                                     999999999999999999999999999999999999999


Q ss_pred             HHHhhcC------CCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhh
Q 011130          247 QLAAKSN------LKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMK  320 (493)
Q Consensus       247 ~~a~~~~------~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~  320 (493)
                      ++.++ +      ..+++.|+||||..+|+++||++.++...++++|.++||.|.+.+|+||+++++..+.++|.+...+
T Consensus       293 k~V~~-n~~~Y~~fPrlvgEcgGkNFHfVH~SA~VesvV~~TvrsAfey~GQkcsA~SRmYvp~s~wp~i~e~l~~~~~q  371 (561)
T KOG2455|consen  293 KKVGE-NVDNYRTFPRLVGECGGKNFHFVHASADVESVVSSTVRSAFEYQGQKCSACSRMYVPESLWPQIREELVEEHSQ  371 (561)
T ss_pred             HHHHh-hhhhhhcchhhhccCCCcceEEeccccchHHHHHHHHHHHHhhcccccchhhhcccchhhcHHHHHHHHHHHhh
Confidence            98876 4      4579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCC-CCCCCccccCCCHHHHHHHHHHHHHHHhC-CCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEE
Q 011130          321 RVVGDP-FKGGIQQGPQIDSEQFEKILKYIRSGVDG-GAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQS  398 (493)
Q Consensus       321 ~~vg~p-~~~~~~~gpli~~~~~~~~~~~i~~a~~~-ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~  398 (493)
                      +++||| .|.++.+||+|+.+.|.|+.++|+.|+.. ..++++||+.++..|+|+.|||+..-.|.++++.||+||||++
T Consensus       372 ~~igd~~~d~~~f~gavIh~~sF~rl~k~le~ak~~~~leiL~GGk~DdS~G~FV~PTiv~~kdP~~pim~ee~fGPvLs  451 (561)
T KOG2455|consen  372 LKIGDPVIDFSTFIGAVIHDKSFARLKKVLEHAKKDPELEILAGGKCDDSTGYFVEPTIVLSKDPKDPIMTEEIFGPVLS  451 (561)
T ss_pred             cccCCccccccchhhhhccHHHHHHHHHHHHhhccCccceeeecCcccCCCCeeecceEEEccCCCcchhhhhccCceeE
Confidence            999998 88999999999999999999999999763 5889999999999999999999999999999999999999999


Q ss_pred             EEEeCC--HHHHHHHH-HcCCCCcEEEEecCCHHHHHHHHHhcc--eeEEEECCcCCCC--CCCCccCCCCCCCC-Ccch
Q 011130          399 ILKYKD--LDEVIQRS-NASQYGLAAGVFTHNLDTANTLMRALR--VGSVWINCFDVFD--AAIPFGGYKQSGQG-REKG  470 (493)
Q Consensus       399 v~~~~~--~~eai~~~-n~~~~gl~a~v~t~d~~~~~~~~~~l~--~g~V~VN~~~~~~--~~~pfGG~~~SG~G-~~~g  470 (493)
                      |+.|+|  ++|+++++ |.++|||+.+||++|.+.+.+..+.|+  +|+.|||+-.+.+  ...||||.+.||.. +.||
T Consensus       452 VyvY~Dd~~~E~l~lv~~tt~YaLTGaiFaqd~~vv~~a~~~Lr~aAgNfYiNdKcTGsvvgqqpFGGaR~SGTNDKaGg  531 (561)
T KOG2455|consen  452 VYVYEDDKFDEVLKLVDNTTPYALTGAIFAQDREVVLHALDVLRMAAGNFYINDKCTGSVVGQQPFGGARLSGTNDKAGG  531 (561)
T ss_pred             EEEeccccHHHHHHHHhcCCcceeccccccccHHHHHHHHHHHHhhhcceEEccccccceeeccccCcccccCCCCCCCC
Confidence            999965  89999999 568999999999999999999999886  9999999876543  67899999999976 7899


Q ss_pred             HHHHHhhhhceEEEEe
Q 011130          471 SYSLSNYLQVKAVVTA  486 (493)
Q Consensus       471 ~~~l~~~~~~k~v~~~  486 (493)
                      ++.+..|+.++.+-..
T Consensus       532 p~~l~RwtSp~~ikEt  547 (561)
T KOG2455|consen  532 PHYLLRWTSPLSIKET  547 (561)
T ss_pred             ceEEEeecCcchhhhc
Confidence            9999999998776433


No 119
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=100.00  E-value=4.9e-62  Score=504.09  Aligned_cols=335  Identities=21%  Similarity=0.242  Sum_probs=292.8

Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChh----hhhh-------ccHHHHH
Q 011130          103 EDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFE----QSAQ-------TEVPMTT  171 (493)
Q Consensus       103 ~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~----~a~~-------~Ev~~~~  171 (493)
                      +|+++++++|++||+  .|+++|..+|.++|++++++|++|.++|++++++|+||+..    ++..       .|+..++
T Consensus         4 ~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~g~~~~~g~~~~~~~~~~~~~~ev~~~~   81 (417)
T PRK00197          4 EYLEELGRRAKAASR--KLAQLSTAQKNRALLAIADALEANAAEILAANAKDLAAARANGLSAAMLDRLLLTEARIEGIA   81 (417)
T ss_pred             hHHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCHHHHHHHH
Confidence            689999999999999  99999999999999999999999999999999988877642    3321       3788899


Q ss_pred             HHHHHHHHhhHHhcCccCCC---CCCceeEEEeeeeeeE-----------------------------------------
Q 011130          172 RLFRYYAGWADKIQGLTAPA---DGPYHVQTLHEPIGVA-----------------------------------------  207 (493)
Q Consensus       172 ~~l~~~a~~~~~~~~~~~~~---~~~~~~~~~~~PlGVv-----------------------------------------  207 (493)
                      +.+++++.+++.. +...+.   ..+...++.++|+|||                                         
T Consensus        82 ~~~~~~a~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~p~~~~~~~~~~ALaaGN~vVlKPs~~tp~t~~~l~  160 (417)
T PRK00197         82 EGLRQVAALPDPV-GEVLDGWTLPNGLRIGRVRVPLGVIGVIYESRPNVTVDAAALCLKSGNAVILRGGSEAIHSNRALV  160 (417)
T ss_pred             HHHHHHhhcCCCc-cccccceecCCCceEEEEecCceEEEEEcCCCchHHHHHHHHHHHhCCeEEEecChhhhHHHHHHH
Confidence            9999999877643 333322   2233578899999998                                         


Q ss_pred             --------------eEEEeeeCCc-cchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccC
Q 011130          208 --------------GVLNIVSGYG-PTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCED  272 (493)
Q Consensus       208 --------------gvv~vv~~~~-~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~d  272 (493)
                                    |++|+|++.+ .++++.|..||+||+|+||||+.+|+.|++.+    +||+++|||||||+||++|
T Consensus       161 ~l~~~~l~~aGlP~gv~~~v~g~~~~~~~~~l~~~~~v~~V~fTGS~~~g~~i~~~a----~~~~~lELGGk~p~IV~~d  236 (417)
T PRK00197        161 AVIQEALEEAGLPADAVQLVETTDRAAVGELLKLDGYVDVIIPRGGAGLIRRVVENA----TVPVIEHGDGICHIYVDES  236 (417)
T ss_pred             HHHHHHHHHcCcChhhEEEecCCChHHHHHHhccCCCccEEEecCCHHHHHHHHHhc----CCCEEeecCCcceEEEeCC
Confidence                          8999999644 45788899999999999999999999998853    5899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHH
Q 011130          273 ADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSG  352 (493)
Q Consensus       273 aDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a  352 (493)
                      ||+|.|++.+++++|.|+| .|++++|+|||+++||+|+++|++++++++++                            
T Consensus       237 Adl~~Aa~~iv~~~~~n~G-~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~~----------------------------  287 (417)
T PRK00197        237 ADLDKALKIVLNAKTQRPS-VCNALETLLVHEAIAEEFLPKLAEALAEAGVE----------------------------  287 (417)
T ss_pred             CCHHHHHHHHHHhccCCCc-ccccceEEEEEHHHhHHHHHHHHHHHHHCCCe----------------------------
Confidence            9999999999999999999 99999999999999999999999999876532                            


Q ss_pred             HhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHH
Q 011130          353 VDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTAN  432 (493)
Q Consensus       353 ~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~  432 (493)
                            ++ ||...  .+ |+ |||+   .++|.++++|+||||++|++|+|+||||+++|+++|||+++|||+|.+.++
T Consensus       288 ------~~-~~~~~--~~-~~-PTi~---~~~~~i~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~V~t~d~~~~~  353 (417)
T PRK00197        288 ------LR-GDEAA--LA-LL-PDVV---PATEEDWDTEYLDLILAVKVVDSLDEAIAHINRYGSGHTEAIVTEDYAAAE  353 (417)
T ss_pred             ------Ee-cCHHH--HH-hh-cccc---cCCcchhhhhhhCceEEEEEeCCHHHHHHHHHhcCCCCceEEEeCCHHHHH
Confidence                  22 11110  12 33 9998   467999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcceeEEEECCcCCCCCCCCccCCCCCCCC----CcchHHHHHhhhhceEEEEeC
Q 011130          433 TLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQG----REKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       433 ~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G----~~~g~~~l~~~~~~k~v~~~~  487 (493)
                      ++++++++|+||||++....+..||||.|+||+|    +++|.+++++|++.|++++.+
T Consensus       354 ~~~~~l~~G~v~VN~~~~~~~~~p~G~~~~sG~g~~~~~~~g~~~l~~~~~~k~v~~~~  412 (417)
T PRK00197        354 RFLNEVDSAAVYVNASTRFTDGGEFGLGAEIGISTQKLHARGPMGLEELTTYKYIVLGD  412 (417)
T ss_pred             HHHHhCCeeEEEEeCCCccCCCCccccchhheeecCCCcCCCccchHhhcEEEEEEECC
Confidence            9999999999999998766778899999999999    999999999999999998754


No 120
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl  5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=100.00  E-value=4.3e-62  Score=502.82  Aligned_cols=329  Identities=19%  Similarity=0.229  Sum_probs=287.0

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChh----hhhh-------ccHHHHHHHHH
Q 011130          107 RAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFE----QSAQ-------TEVPMTTRLFR  175 (493)
Q Consensus       107 ~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~----~a~~-------~Ev~~~~~~l~  175 (493)
                      .++++|++||+  .|+++|.++|.++|.++++.|++|.++|+++++.|+||+..    ++..       .|+..+++.++
T Consensus         2 ~~~~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~gk~~e~G~~~a~~~~l~~~~~ev~~~~~~~~   79 (406)
T cd07079           2 ELAKRAKAASR--ALATLSTEQKNAALLAIADALEANRDEILEANAKDLAAAREAGLSEALLDRLLLTPERIEAMAEGLR   79 (406)
T ss_pred             hHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHhchHHHHHHhhhhHHHHHHcCCCHHHHhHhcCCHHHHHHHHHHHH
Confidence            46889999999  99999999999999999999999999999999777666543    2221       38889999999


Q ss_pred             HHHHhhHHhcCccCCC---CCCceeEEEeeeeeeE---------------------------------------------
Q 011130          176 YYAGWADKIQGLTAPA---DGPYHVQTLHEPIGVA---------------------------------------------  207 (493)
Q Consensus       176 ~~a~~~~~~~~~~~~~---~~~~~~~~~~~PlGVv---------------------------------------------  207 (493)
                      +++...+. .+...+.   ..+...++.++|+|||                                             
T Consensus        80 ~~a~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~p~~~~~~~~~ALaaGN~vVlKps~~tp~~~~~l~~~~~  158 (406)
T cd07079          80 QVAALPDP-VGEVLRGWTLPNGLQIEKVRVPLGVIGIIYESRPNVTVDAAALCLKSGNAVILRGGSEALHSNRALVEIIQ  158 (406)
T ss_pred             HHHhcCCC-CcccccceeccCccceeEEecceEEEEEecCCCcchHHHHHHHHHHhCCEEEEeCCchhhhHHHHHHHHHH
Confidence            99876543 2332222   1223567899999999                                             


Q ss_pred             ----------eEEEeeeCCcc-chhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHH
Q 011130          208 ----------GVLNIVSGYGP-TAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVD  276 (493)
Q Consensus       208 ----------gvv~vv~~~~~-~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~  276 (493)
                                |++|+|++.+. +.++.|..||++|+|+||||+++|+.|++.+    ++|+++|||||||+||++|||+|
T Consensus       159 ~~l~~aG~P~gvv~~v~g~~~~~~~~~l~~~~~v~~i~fTGS~~~G~~i~~~a----~~pv~lELGGk~p~IV~~dADl~  234 (406)
T cd07079         159 EALEEAGLPEDAVQLIPDTDREAVQELLKLDDYIDLIIPRGGAGLIRFVVENA----TIPVIKHGDGNCHVYVDESADLE  234 (406)
T ss_pred             HHHHHcCCCcccEEEecCCChHHHHHHHcCCCCccEEEeCCCHHHHHHHHHhc----CCCEEeecCCcceEEEeCCCCHH
Confidence                      99999998544 6788899999999999999999999998865    58999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCC
Q 011130          277 KAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGG  356 (493)
Q Consensus       277 ~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~g  356 (493)
                      .|++.+++++|.|+| .|++++|||||+++||+|+++|++++.+                                  .|
T Consensus       235 ~Aa~~i~~~~f~n~G-~C~a~~rv~V~~si~d~f~~~l~~~~~~----------------------------------~g  279 (406)
T cd07079         235 MAVRIVVNAKTQRPS-VCNALETLLVHRDIAEEFLPKLAEALRE----------------------------------AG  279 (406)
T ss_pred             HHHHHHHHcccCCCc-ccccceeEEEeHHHHHHHHHHHHHHHHH----------------------------------CC
Confidence            999999999999999 9999999999999999999999997764                                  25


Q ss_pred             CEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHH
Q 011130          357 AKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMR  436 (493)
Q Consensus       357 a~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~  436 (493)
                      ++++.|+..    ..|++||    ++++|+++++|+||||++|++|+|+||||+++|+++|||+++|||+|.+.++++++
T Consensus       280 a~~~~g~~~----~~~~~pt----v~~d~~i~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GLsa~ift~d~~~a~~~~~  351 (406)
T cd07079         280 VELRGDEET----LAILPGA----KPATEEDWGTEYLDLILAVKVVDSLDEAIAHINRYGSGHTEAIVTENYETAERFLR  351 (406)
T ss_pred             CEEecCHHH----HHhcccc----cCCCcchhhhhhhCceeEEEEeCCHHHHHHHHHHhCCccccEeeeCCHHHHHHHHH
Confidence            665533321    1377888    68899999999999999999999999999999999999999999999999999999


Q ss_pred             hcceeEEEECCcCCCCCCCCccCCCCCCC----CCcchHHHHHhhhhceEEEE
Q 011130          437 ALRVGSVWINCFDVFDAAIPFGGYKQSGQ----GREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       437 ~l~~g~V~VN~~~~~~~~~pfGG~~~SG~----G~~~g~~~l~~~~~~k~v~~  485 (493)
                      ++++|+||||+++...+..||||.++||+    |+++|.+++++|++.|+++.
T Consensus       352 ~~~~G~v~iN~~~~~~~~~pfg~~~~sG~~~~~g~~~g~~~l~~~~~~k~i~~  404 (406)
T cd07079         352 EVDSAAVYVNASTRFTDGGEFGLGAEIGISTQKLHARGPMGLEELTTYKYIVR  404 (406)
T ss_pred             hCCeeEEEEeCCCcccCCCccccceeeeeecCCCcCCCCcChHHhcEEEEEEe
Confidence            99999999999877677789999999998    89999999999999999875


No 121
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=100.00  E-value=3.3e-61  Score=502.17  Aligned_cols=353  Identities=22%  Similarity=0.214  Sum_probs=298.9

Q ss_pred             CCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHH
Q 011130          100 GEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAG  179 (493)
Q Consensus       100 ~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~  179 (493)
                      ...+|+++++++|++||+  .|+.++..+|.++|+++++.|++|.++|++++++|+|||+.+++.       ..+++++.
T Consensus        33 ~~~~dv~~av~~A~~A~~--~w~~~~~~~R~~~L~~la~~l~~~~~ela~~~~~E~Gk~~~ea~~-------~~~~~~~~  103 (465)
T PRK15398         33 GVFASVDDAVAAAKVAQQ--RYQQKSLAMRQRIIDAIREALLPHAEELAELAVEETGMGRVEDKI-------AKNVAAAE  103 (465)
T ss_pred             cHHHHHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHH-------HHHHHHHH
Confidence            678999999999999999  999999999999999999999999999999999999999887653       23455544


Q ss_pred             hhHH---hcCccCCCCCCceeEEEeeeeeeE-------------------------------------------------
Q 011130          180 WADK---IQGLTAPADGPYHVQTLHEPIGVA-------------------------------------------------  207 (493)
Q Consensus       180 ~~~~---~~~~~~~~~~~~~~~~~~~PlGVv-------------------------------------------------  207 (493)
                      ....   +...... ..+...++.++|+|||                                                 
T Consensus       104 ~~~~~~~~~~~~~~-~~~~~~~v~~~P~GVV~~I~PwN~P~~~~~~~ia~ALaaGN~VVlKps~~tp~t~~~l~~ll~~~  182 (465)
T PRK15398        104 KTPGVEDLTTEALT-GDNGLTLIEYAPFGVIGAVTPSTNPTETIINNAISMLAAGNSVVFSPHPGAKKVSLRAIELLNEA  182 (465)
T ss_pred             HhccccccccCccc-CCCceeEEEecccEEEEEeeCCCCchHHHHHHHHHHHHhCCcEEEECCccchHHHHHHHHHHHHH
Confidence            3321   1111111 1224567888999999                                                 


Q ss_pred             --------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHH
Q 011130          208 --------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAA  279 (493)
Q Consensus       208 --------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa  279 (493)
                              |++|+|++.+.+.++.|++||+||+|+||||+++|+.|++     ..||+++|+|||||+||++|||+|.|+
T Consensus       183 l~eaGlP~gvv~vv~g~~~~~~~~L~~~~~vd~I~fTGS~~~G~~v~~-----~~k~~~~elGGk~p~IV~~dADld~Aa  257 (465)
T PRK15398        183 IVAAGGPENLVVTVAEPTIETAQRLMKHPGIALLVVTGGPAVVKAAMK-----SGKKAIGAGAGNPPVVVDETADIEKAA  257 (465)
T ss_pred             HHHcCCCCCeEEEecCCCHHHHHHHHcCCCccEEEeeCCHHHHHHHHH-----cCCceeeecCCCceEEEecCCCHHHHH
Confidence                    8999999866778899999999999999999999999988     358999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEE
Q 011130          280 ELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKL  359 (493)
Q Consensus       280 ~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v  359 (493)
                      +.|++++|.|+||.|+++++||||+++||+|+++|+++               .+|++++.+++++.++|+++.++++++
T Consensus       258 ~~i~~g~~~n~GQ~C~A~~rvlV~~si~d~f~~~l~~~---------------~~~li~~~~~~~v~~~l~~~~~~~~~~  322 (465)
T PRK15398        258 RDIVKGASFDNNLPCIAEKEVIVVDSVADELMRLMEKN---------------GAVLLTAEQAEKLQKVVLKNGGTVNKK  322 (465)
T ss_pred             HHHHHhcccCCCCcCCCCceEEEeHHHHHHHHHHHHHc---------------CCccCCHHHHHHHHHHHhhcccccchh
Confidence            99999999999999999999999999999999999885               137999999999999999654456677


Q ss_pred             EeCCcc---cCCCCcee---eceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCc--EEEEecCCHHHH
Q 011130          360 ETGGER---LGAKGYYI---KPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGL--AAGVFTHNLDTA  431 (493)
Q Consensus       360 ~~gg~~---~~~~g~~~---~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl--~a~v~t~d~~~~  431 (493)
                      +.||..   ....|+++   +|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||  +++|||+|.+++
T Consensus       323 ~~g~~~~~i~~~~G~~~~~~~~tvl~~v~~d~~i~~eE~FGPVl~V~~~~d~deAi~~aN~~~yGL~hs~~IfT~d~~~a  402 (465)
T PRK15398        323 WVGKDAAKILEAAGINVPKDTRLLIVETDANHPFVVTELMMPVLPVVRVKDVDEAIALAVKLEHGNRHTAIMHSRNVDNL  402 (465)
T ss_pred             hhCCCHHHHHHhCCCCCCCCCCEEEecCCCCCchhcccccCceEEEEEeCCHHHHHHHHHhcccCCcceEEEecCCHHHH
Confidence            777642   12246666   3799999999999999999999999999999999999999999988  999999999999


Q ss_pred             HHHHHhcceeEEEECCcCCCCCCCCccCCCCCCC--C-Cc-chHHHHHhhhhceEEE
Q 011130          432 NTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQ--G-RE-KGSYSLSNYLQVKAVV  484 (493)
Q Consensus       432 ~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~--G-~~-~g~~~l~~~~~~k~v~  484 (493)
                      +++++++++|+||||++..  +.+||||.|.|.+  | .. .|..+-..|+..+.++
T Consensus       403 ~~~a~~l~~G~V~iN~~~~--~~~p~gg~~~s~~~~~~~~g~~~~~~~~~~~~~~~~  457 (465)
T PRK15398        403 NKMARAIQTSIFVKNGPSY--AGLGLGGEGFTTFTIATPTGEGVTSARTFTRRRRCV  457 (465)
T ss_pred             HHHHHhCCceEEEECCCCc--cccCcCCCCCceeeecccCCCCccchhhhhhheeec
Confidence            9999999999999997642  6799999999985  2 22 2444555666655544


No 122
>KOG2453 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=100.00  E-value=5.5e-62  Score=456.87  Aligned_cols=415  Identities=28%  Similarity=0.470  Sum_probs=382.4

Q ss_pred             cceeCCEeeeCCCCCeeeeecCCCCCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           67 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        67 ~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      .-..+|+|.  .+|..++.++|++.++|++|..++.+|.+.+++.|++|++  .|-..|..+|.+|.+.+.|.|+...+-
T Consensus        21 ~gvy~gkw~--a~g~vv~t~~pann~pia~v~~asv~dye~~~k~a~ea~k--iw~~vpapkrgeivrqigdalr~klq~   96 (507)
T KOG2453|consen   21 AGVYHGKWA--ASGQVVQTFAPANNSPIANVQNASVQDYEIAIKEAKEAYK--IWCEVPAPKRGEIVRQIGDALRTKLQN   96 (507)
T ss_pred             cceeeeeec--cCCceeEeecCCCCChhHHHhhccHHHHHHHHHHHHHHHH--HHhcCCCCccchHHHHHHHHHHHHHHH
Confidence            345678996  4789999999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCCCCCCce-eEEEeeeeeeE------------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYH-VQTLHEPIGVA------------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~-~~~~~~PlGVv------------------  207 (493)
                      |-.++++|+||...+.. +|+..-++.|+|..++.+.+.+...|...+.+ ...+..|+|+|                  
T Consensus        97 lg~lvslemgkilaegv-gevqeyvdicdyavglsr~l~g~i~pserpghalleqwnplg~vgvitafnfpcavygwnna  175 (507)
T KOG2453|consen   97 LGKLVSLEMGKILAEGV-GEVQEYVDICDYAVGLSRSLEGKIFPSERPGHALLEQWNPLGVVGVITAFNFPCAVYGWNNA  175 (507)
T ss_pred             HhhhhhhhhhhHhhhcc-hhHHHHHHHHHHhhhhhhhhCCcccCCCCCchhHHHhcCCcceEEEEEeccCCceeeccCch
Confidence            99999999999999987 59999999999999999999999888765444 45577899988                  


Q ss_pred             ---------------------------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHH
Q 011130          208 ---------------------------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQL  248 (493)
Q Consensus       208 ---------------------------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~  248 (493)
                                                             +......| +.+.+.++..+.+++.+.||||+++++.+.+.
T Consensus       176 iaMv~gncVvWKpApttpLtTiAvtklIaevL~qnnl~~aicsltcG-~aDigrAaakdgRvnlvsftGssQvgKsvgq~  254 (507)
T KOG2453|consen  176 IAMVCGNCVVWKPAPTTPLTTIAVTKLIAEVLEQNNLPGAICSLTCG-GADIGRAAAKDGRVNLVSFTGSSQVGKSVGQQ  254 (507)
T ss_pred             hhhhhcceeEecCCCCcceeHHHHHHHHHHHHhccCCCcceeeeccc-chhhhhhccccCceeecccccchhhhhHHHHH
Confidence                                                   33444444 67789999999999999999999999999988


Q ss_pred             HhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCC
Q 011130          249 AAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFK  328 (493)
Q Consensus       249 a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~  328 (493)
                      ... ..-+..|||||||+.||.+|||+..++...++++...+||+|+...|++||+++||+.+++|++...++++|+|+|
T Consensus       255 vqa-rfgk~llelggnnaiiv~edadl~lvvps~lfaavgtagqrctt~rrl~~hesvyd~vlerlkkayaq~~ignpld  333 (507)
T KOG2453|consen  255 VQA-RFGKLLLELGGNNAIIVNEDADLNLVVPSTLFAAVGTAGQRCTTTRRLIVHESVYDQVLERLKKAYAQFEIGNPLD  333 (507)
T ss_pred             HHH-HhhhHHHhhcCCceEEEeccccceeeehHHHHHHhcccccchhhhhHHHhhHHHHHHHHHHHHHHHHheecCCcCC
Confidence            776 4567899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHH
Q 011130          329 GGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEV  408 (493)
Q Consensus       329 ~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~ea  408 (493)
                      +.+.+||+.++++..+.+..++++++.|.++++||+..+..|+|++|||++ ...|.++..+|.|.||+.|.+|++++|+
T Consensus       334 ~ntl~gplht~qav~~f~~~veeak~~ggki~yggkv~er~gnfveptivt-l~hda~vv~~etfapilyvlkf~~~eea  412 (507)
T KOG2453|consen  334 SNTLIGPLHTQQAVGKFKASVEEAKASGGKIEYGGKVLERDGNFVEPTIVT-LKHDAPVVLRETFAPILYVLKFSTLEEA  412 (507)
T ss_pred             CCceeccccCHHHHHHHHHHHHHHHhcCCeEEECCEeeccCCCcccceEEE-ecCCcchhhhhhccceeeEEeccchhhh
Confidence            999999999999999999999999999999999999988899999999998 8899999999999999999999999999


Q ss_pred             HHHHHcCCCCcEEEEecCCHHHHHHHHH--hcceeEEEECCcCCC-CCCCCccCCCCCCCCCcchHHHHHhhhhceEEEE
Q 011130          409 IQRSNASQYGLAAGVFTHNLDTANTLMR--ALRVGSVWINCFDVF-DAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVT  485 (493)
Q Consensus       409 i~~~n~~~~gl~a~v~t~d~~~~~~~~~--~l~~g~V~VN~~~~~-~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~  485 (493)
                      +.+-|+.+-||+++|||+|.+.+.++..  ..++|.|+||-++.. .-.-.|||.|++|.||+.|.+++.+|++..+.++
T Consensus       413 ~ainnev~qglsssift~n~~nifrw~gpkgsdcgivnvniptsgaeiggafggek~tgggresgsdswkqymrrstcti  492 (507)
T KOG2453|consen  413 IAINNEVDQGLSSSIFTTNIQNIFRWMGPKGSDCGIVNVNIPTSGAEIGGAFGGEKETGGGRESGSDSWKQYMRRSTCTI  492 (507)
T ss_pred             heeccccccccchhhhhcCHHHHHhhhCCCCCccceEEecCCCCchhhcccccCccccCCCcccCchHHHHHHhhceeee
Confidence            9999999999999999999999999985  458999999986442 2345899999999999999999999999999999


Q ss_pred             eCCC
Q 011130          486 ALKN  489 (493)
Q Consensus       486 ~~~~  489 (493)
                      ++.+
T Consensus       493 nysk  496 (507)
T KOG2453|consen  493 NYSK  496 (507)
T ss_pred             eccc
Confidence            8744


No 123
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=100.00  E-value=8.3e-60  Score=494.43  Aligned_cols=364  Identities=16%  Similarity=0.157  Sum_probs=310.5

Q ss_pred             cCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHH
Q 011130           99 EGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYA  178 (493)
Q Consensus        99 ~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a  178 (493)
                      ..+.+|+++++++|++||+  .|++++.++|.++|++++++|++++++|++++++|+|||..+.+..+.......+.+++
T Consensus         4 ~~~~~~v~~av~~A~~A~~--~w~~~s~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~~~~~~~~~~~~~~~~~~~   81 (488)
T TIGR02518         4 LYSIQQVRNLIRSAKVAQK--KLANMTQEQIDKIVKAIVDAAYENAVKLAKMANEETGFGKWEDKVIKNVFAATIVYDSI   81 (488)
T ss_pred             ccCHHHHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999  99999999999999999999999999999999999999987755322233444455454


Q ss_pred             HhhHHhcCccCCCCCCceeEEEeeeeeeE---------------------------------------------------
Q 011130          179 GWADKIQGLTAPADGPYHVQTLHEPIGVA---------------------------------------------------  207 (493)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~PlGVv---------------------------------------------------  207 (493)
                      ...+. .+. ...+.+...+..++|+|||                                                   
T Consensus        82 ~~~~~-~G~-~~~~~~~~~~~~~~PlGVV~~I~P~n~P~~~~~~k~~~AL~aGNaVIlKps~~a~~s~~~~~~~l~~~l~  159 (488)
T TIGR02518        82 KDMKT-IGI-LSEDKEKKVIEIAVPVGVVAGLIPSTNPTSTAIYKTLISIKARNAIVFSPHPNAKKCIIETVKLMRKAAE  159 (488)
T ss_pred             hhCcc-cce-ecCCCCcceEEEEecceEEEEEcccCChHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHHHHHHHHH
Confidence            42222 232 2223345578899999999                                                   


Q ss_pred             ------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHH
Q 011130          208 ------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAEL  281 (493)
Q Consensus       208 ------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~  281 (493)
                            |++|+|++.+.+.++.|+.||+||+|.||||+.+++.+    .. ++||+++|+|||+|+||++|||+|.|++.
T Consensus       160 eaGlP~gvv~~v~g~~~e~~~~L~~~~~vd~V~fTGs~~v~~~a----~~-~~~pv~~e~gGn~p~iV~~dADld~Aa~~  234 (488)
T TIGR02518       160 EAGAPEGAIGCITVPTIEGTNELMKNKDTSLILATGGEAMVKAA----YS-SGTPAIGVGPGNGPAYIERTANVKKAVRD  234 (488)
T ss_pred             HcCcCcccEEEEcCCCHHHHHHHHhCCCcCEEEEeCCHHHHHHH----HH-cCCCEEEEcCCCCeEEEeCCCCHHHHHHH
Confidence                  99999998777889999999999999999999976544    33 67999999999999999999999999999


Q ss_pred             HHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHH-------HhhcccCCC-CCCCCccccCCCHHHHHHHHHHHHHHH
Q 011130          282 AHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANAL-------AMKRVVGDP-FKGGIQQGPQIDSEQFEKILKYIRSGV  353 (493)
Q Consensus       282 i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~-------~~~~~vg~p-~~~~~~~gpli~~~~~~~~~~~i~~a~  353 (493)
                      ++.++|+++||.|++.++||||+++||+|+++|+++       .+.+++|+| +++++++||+++..+++++.++++.++
T Consensus       235 iv~sk~~~~Gq~C~a~~rllV~~~i~d~f~~~L~~~g~~~~~~~~~~~vg~~~~~~~~~~gp~i~~~~~~~i~~~i~~av  314 (488)
T TIGR02518       235 IIDSKTFDNGTICASEQSIIVEECNKDAVVEELKKQGGYFLTAEEAEKLGKFILRPNGTMNPQIVGKSPQVIANLAGLTV  314 (488)
T ss_pred             HHHHHhcCCCCCCCCCCEEEEeHHHHHHHHHHHHHhhhhhcCHHHHHhhcccccCCCCCcCcccccchHHHHHHHhcccc
Confidence            999999999999999999999999999999999998       899999996 678899999999999999999999999


Q ss_pred             hCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHc----CCCCcEEEEecCCHH
Q 011130          354 DGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNA----SQYGLAAGVFTHNLD  429 (493)
Q Consensus       354 ~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~----~~~gl~a~v~t~d~~  429 (493)
                      .+|+++++||..              .+.+++++ ++|+||||++|++|+|+||||+++|+    ++|||+++|||+|.+
T Consensus       315 ~~gakll~gg~~--------------~v~~~~~~-~~E~fgPVl~v~~~~~~dEAI~~an~~i~~~~~Glta~I~T~d~~  379 (488)
T TIGR02518       315 PEDAKVLIGEQN--------------GVGNKNPY-SREKLTTILAFYTEENWHEACELSIELLQNEGAGHTLIIHSENKD  379 (488)
T ss_pred             CCCCEEEEeCCC--------------CCCCCCcc-ccCccCceEEEEEeCCHHHHHHHHHHhhhcCCCCCeEEEEeCCHH
Confidence            999999999852              24567775 79999999999999999999999887    689999999999999


Q ss_pred             HHHHHHHhcceeEEEECCcCC---------CCCCCC--ccCCCCCCCCCcchHHHHHhhhhceEEEEeCCC
Q 011130          430 TANTLMRALRVGSVWINCFDV---------FDAAIP--FGGYKQSGQGREKGSYSLSNYLQVKAVVTALKN  489 (493)
Q Consensus       430 ~~~~~~~~l~~g~V~VN~~~~---------~~~~~p--fGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~~~  489 (493)
                      .+++|++++++|+||||++..         +.+.+-  ||+++.++..   .+-+++++++.|+|...++.
T Consensus       380 ~a~~f~~~i~ag~V~VN~~~~~~~~Ga~t~~~~~~~~G~G~~~g~st~---~~v~~~~l~~~k~v~~~~~~  447 (488)
T TIGR02518       380 IVREFALKKPVSRMLVNTGGSLGGIGATTNLVPAFTLGCGAVGGSSTS---DNITPENLINIRRVAYGVRE  447 (488)
T ss_pred             HHHHHHHhCCeeEEEEcCCCcccccccccCCCccccccccccCCCcCC---CCCCHHHhheeeEEEecccc
Confidence            999999999999999996432         223322  5555544444   27788999999999888744


No 124
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=100.00  E-value=1.4e-59  Score=511.18  Aligned_cols=330  Identities=19%  Similarity=0.230  Sum_probs=291.7

Q ss_pred             HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHcC--CChhhhh---hccHHHHHH
Q 011130          104 DVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALE------TWDNG--KPFEQSA---QTEVPMTTR  172 (493)
Q Consensus       104 ~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~------~~e~G--k~~~~a~---~~Ev~~~~~  172 (493)
                      ++++++++|++||+  .|+++|..+|.++|++++++|+++.++|++++      ++|+|  ||+.++.   ..|+..+++
T Consensus       295 ~~~~~~~aA~~A~~--~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~~~~d~~~~~E~G~~k~~~~~~~~~~~ev~~~~~  372 (718)
T PLN02418        295 GAREMAVAARESSR--KLQALSSEERKKILLDVADALEANEELIKAENELDVAAAQEAGYEKSLVSRLTLKPGKIASLAA  372 (718)
T ss_pred             HHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHhCCchhHHHHHhccHHHHHHHHH
Confidence            59999999999999  99999999999999999999999999999996      77999  8877763   348999999


Q ss_pred             HHHHHHHhhHHhcCccCC---CCCCceeEEEeeeeeeE------------------------------------------
Q 011130          173 LFRYYAGWADKIQGLTAP---ADGPYHVQTLHEPIGVA------------------------------------------  207 (493)
Q Consensus       173 ~l~~~a~~~~~~~~~~~~---~~~~~~~~~~~~PlGVv------------------------------------------  207 (493)
                      .++|+++. .+..+...+   ...+...++.++|+|||                                          
T Consensus       373 ~~~~~a~~-~~~~g~~~~~~~~~~~~~~~~~r~PlGVV~~I~PwnP~~~~~kiapALaaGNtVVlKPse~tp~s~~~l~~  451 (718)
T PLN02418        373 SIRQLADM-EDPIGRVLKRTEVADGLVLEKTSCPLGVLLIIFESRPDALVQIASLAIRSGNGLLLKGGKEAARSNAILHK  451 (718)
T ss_pred             HHHHHhcC-ccccCccccccccCCCceEEEEEEeeeEEEEEeCCCcHHHHHHHHHHHHhCCEEEEeCCccchHHHHHHHH
Confidence            99999987 344444333   12234468899999999                                          


Q ss_pred             --------e----EEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCH
Q 011130          208 --------G----VLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADV  275 (493)
Q Consensus       208 --------g----vv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl  275 (493)
                              |    ++|+|++ +.++++.|..||+|++|+||||+..++.+   ++. ++||+++|||||||+||++|||+
T Consensus       452 l~~eAlP~gv~~~v~nvv~g-~~~~g~~L~~~~~v~~V~FTGSt~~i~~~---aa~-~~k~v~lELGGk~p~iV~~DADl  526 (718)
T PLN02418        452 VITDAIPKTVGGKLIGLVTS-RDEIPDLLKLDDVIDLVIPRGSNKLVSQI---KAS-TKIPVLGHADGICHVYVDKSADM  526 (718)
T ss_pred             HHHHHccccCCcceEEEeCC-cHHHHHHHhhCCCCCEEEEeCCHHHHHHH---HHh-cCCCEEEeCCCcceEEEeCCCCH
Confidence                    7    4999997 66789999999999999999999754444   555 78999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhC
Q 011130          276 DKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDG  355 (493)
Q Consensus       276 ~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~  355 (493)
                      |.|++.+++++|.| ||.|++.+|+|||+++||+                        |         .+.++|++++++
T Consensus       527 d~A~~~i~~~~~~n-GQ~C~a~~RllVh~~i~d~------------------------G---------~~~~~i~~a~~~  572 (718)
T PLN02418        527 DMAKRIVVDAKTDY-PAACNAMETLLVHKDLVQN------------------------G---------GLNDLLVALRSA  572 (718)
T ss_pred             HHHHHHHHHHhCCC-CCccccCcEEEEecccccc------------------------c---------cHHHHHHHHHHC
Confidence            99999999999999 9999999999999999997                        1         258899999999


Q ss_pred             CCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHH
Q 011130          356 GAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLM  435 (493)
Q Consensus       356 ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~  435 (493)
                      |+++ +||....  |      +|. + ++|++++||+||||++|.+|+|+||||+++|+++|||+++|||+|.+.+.+++
T Consensus       573 Ga~l-~Gg~~~~--g------~l~-~-~~~~i~~eE~FgPv~~i~~~~~~dEAI~~aN~s~yGLsa~V~T~d~~~a~~~a  641 (718)
T PLN02418        573 GVTL-YGGPRAS--K------LLN-I-PEAQSFHHEYSSLACTVEIVDDVHAAIDHIHRHGSAHTDCIVTEDSEVAEIFL  641 (718)
T ss_pred             CCEE-ECCcccc--C------eeC-C-CCchhhhCCcCCeeEEEEEECCHHHHHHHHhcCCCCCeeEEEcCCHHHHHHHH
Confidence            9999 6886432  4      233 3 78999999999999999999999999999999999999999999999999999


Q ss_pred             HhcceeEEEECCcCCCCCCCCccCCCCCCC--CCcc--hHHHHHhhhhceEEEEe
Q 011130          436 RALRVGSVWINCFDVFDAAIPFGGYKQSGQ--GREK--GSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       436 ~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~--G~~~--g~~~l~~~~~~k~v~~~  486 (493)
                      +++++|.||||+++.+.+..||||+|+||+  |+++  |+++|++|++.|+|++.
T Consensus       642 ~~l~aG~V~IN~~~~~~~~~PfGG~k~SG~stGr~~~~G~~gl~~~t~~K~v~~g  696 (718)
T PLN02418        642 RQVDSAAVFHNASTRFSDGARFGLGAEVGISTGRIHARGPVGVEGLLTTRWILRG  696 (718)
T ss_pred             HhCCeeEEEEeCCCCCCCCCCCCCcccccccCCcCCCCCHHHHHHHhcEEEEEEC
Confidence            999999999999876677889999999999  9875  99999999999999775


No 125
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=100.00  E-value=1.2e-59  Score=466.95  Aligned_cols=408  Identities=30%  Similarity=0.449  Sum_probs=353.1

Q ss_pred             ceeCCEeeeCCCCCeeeeecCCC-CCeEEEEecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 011130           68 LLINGQFVDSASGKTFPTLDPRT-GDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDE  146 (493)
Q Consensus        68 ~~I~G~~~~~~~~~~~~v~~P~t-g~~i~~v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~e  146 (493)
                      -.++|+.+.  .|+..+++||.+ .+++++|.+++.+|+++|++.|.+++.  .|..+|+.+|..+|++++|+++.+..+
T Consensus       116 p~~~~~~~~--~g~~~pV~nPad~~dvVG~V~ea~~~~v~~A~~~A~~a~p--~W~atp~~eRAaiL~raAdlme~~m~~  191 (769)
T COG4230         116 PIVNGAPVA--GGEPRPVINPADPDDIVGTVTEATEADVEQALEAAVAAAP--IWSATPPAERAAILERAADLMEAQMPQ  191 (769)
T ss_pred             cccCCCcCC--CCCcccccCCCCHhHCeeeeeecCHHHHHHHHHHHHhhCc--ccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            368888774  578889999997 679999999999999999999999998  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCc-cCCCCCCce-eEEEeeeeeeE-----------------
Q 011130          147 IAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGL-TAPADGPYH-VQTLHEPIGVA-----------------  207 (493)
Q Consensus       147 la~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~-~~~~~~~~~-~~~~~~PlGVv-----------------  207 (493)
                      |..++++|.||+...+.. ||.+++++||||+..++.-.+. .....+... +.-+.-|+.+.                 
T Consensus       192 L~~L~~REAGKtl~naIA-EVREAVDFlrYYA~~ar~~~g~~~~~~~G~vVcISPWNFPLAIFtGqiaAAL~aGN~VlAK  270 (769)
T COG4230         192 LMGLLVREAGKTLSNAIA-EVREAVDFLRYYAGQARDTFGNLTHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAK  270 (769)
T ss_pred             HHHHHHHHhccchhhHHH-HHHHHHHHHHHHHHHHhcccCccccCCCCcEEEECCCCchHHHHHhHHHHHHHcCCccccC
Confidence            999999999999999875 9999999999999988763332 111001100 00111222111                 


Q ss_pred             -----------------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcC--CCceeEecC
Q 011130          208 -----------------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSN--LKPVTLELG  262 (493)
Q Consensus       208 -----------------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~--~~pv~lelg  262 (493)
                                             +++++++|.|+++|..|+.+++++.|+||||+++++.|-+..+.++  ..|++.|.|
T Consensus       271 PAEqTpLIAa~aV~ll~eAGvP~~~lqLLpG~G~tvGa~L~~darv~GV~FTGSTevA~li~~~LA~r~g~~~pLIAETG  350 (769)
T COG4230         271 PAEQTPLIAAQAVRLLHEAGVPPGVLQLLPGRGETVGAALTADARVAGVMFTGSTEVARLIQRQLAKRQGRPIPLIAETG  350 (769)
T ss_pred             ccccccHHHHHHHHHHHHcCCChhhHHhcCCCCcccchhhhcCcccceEEEeCcHHHHHHHHHHHhhcCCCCCceEeccC
Confidence                                   8899999999999999999999999999999999999998877644  468999999


Q ss_pred             CCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHH
Q 011130          263 GKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQF  342 (493)
Q Consensus       263 G~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~  342 (493)
                      |.|.+||+.+|--++++..++.|+|..+||+|++...+++++++.|..++.|+..+.++++|+|..-.+++||+|+.++.
T Consensus       351 GqNAMIVDSsAL~EQVv~Dvl~SAFdSAGQRCSALRvLclQ~DvAd~~l~mLKGAm~el~~G~p~~l~tDVGPVIdaEAk  430 (769)
T COG4230         351 GQNAMIVDSSALAEQVVADVLASAFDSAGQRCSALRVLCLQEDVADRILTMLKGAMAELRVGNPDRLTTDVGPVIDAEAK  430 (769)
T ss_pred             CcceEEeechhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHHhccCCccceeccccccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCEEEeCCcccC--CCCceeeceEEecCCCCccccccccccceEEEEEeC--CHHHHHHHHHcCCCC
Q 011130          343 EKILKYIRSGVDGGAKLETGGERLG--AKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYK--DLDEVIQRSNASQYG  418 (493)
Q Consensus       343 ~~~~~~i~~a~~~ga~v~~gg~~~~--~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~--~~~eai~~~n~~~~g  418 (493)
                      ..++++|+.++..|-.+..- ....  .+|.|+.||+++-..  ..-++.|+||||+.|++|+  ++++.|+-+|.++||
T Consensus       431 ~~i~~Hi~~mr~~gr~v~q~-~~~~~~q~GtFv~Ptl~El~~--~~eL~rEVFGPVLHVvRy~~~~l~~vi~~INatGyG  507 (769)
T COG4230         431 ANIEKHIQTMRSKGRLVHQA-AAPNSLQKGTFVAPTLIELEN--LDELQREVFGPVLHVVRYKRDELDEVIDQINATGYG  507 (769)
T ss_pred             HHHHHHHHHHHhcccchhhc-cCCCccCCceeeCceeEEcCC--HHHHHHHhccceeEEEEecHHHHHHHHHHHhccCcc
Confidence            99999999988776444322 2222  379999999997543  3346899999999999995  689999999999999


Q ss_pred             cEEEEecCCHHHHHHHHHhcceeEEEECCcCC--CCCCCCccCCCCCCCC-CcchHHHHHhhhhceEE
Q 011130          419 LAAGVFTHNLDTANTLMRALRVGSVWINCFDV--FDAAIPFGGYKQSGQG-REKGSYSLSNYLQVKAV  483 (493)
Q Consensus       419 l~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~--~~~~~pfGG~~~SG~G-~~~g~~~l~~~~~~k~v  483 (493)
                      |+.+|+|+-.+++.++.+++++|++|||.-..  .-.-+||||.|.||.| +.||+.+|..|+..+..
T Consensus       508 LT~GvHtRideti~~v~~~~~aGNlYVNRN~vGAVVGVQPFGG~GLSGTGPKAGGp~YL~Rl~~~~p~  575 (769)
T COG4230         508 LTLGVHTRIDETIAHVTERAHAGNLYVNRNIVGAVVGVQPFGGEGLSGTGPKAGGPLYLLRLVSERPW  575 (769)
T ss_pred             eeeeeecchHHHHHHHHhhccccceEeeccceeeEEeeccCCCCCCCCCCCCCCChHHHHHHHhcCCc
Confidence            99999999999999999999999999998543  2345899999999999 78999999999876653


No 126
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=100.00  E-value=3e-59  Score=522.46  Aligned_cols=371  Identities=17%  Similarity=0.274  Sum_probs=319.0

Q ss_pred             EecCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHH
Q 011130           97 VAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRY  176 (493)
Q Consensus        97 v~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~  176 (493)
                      ....+.+|++++|++|++||+  .|+++|.++|.++|++++++|++++++|++++++|+|||+.+++..++..+...+++
T Consensus         6 ~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~EtGk~~~e~~~~~~~~~~~~~~~   83 (862)
T PRK13805          6 MAVTNVAELDALVEKAKKAQE--EFATFTQEQVDKIVRAAALAALDARIPLAKMAVEETGRGVVEDKVIKNHFASEYIYN   83 (862)
T ss_pred             cCCCCHHHHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999  999999999999999999999999999999999999999988764344444444444


Q ss_pred             HHHhhHHhcCccCCCCCCceeEEEeeeeeeE-------------------------------------------------
Q 011130          177 YAGWADKIQGLTAPADGPYHVQTLHEPIGVA-------------------------------------------------  207 (493)
Q Consensus       177 ~a~~~~~~~~~~~~~~~~~~~~~~~~PlGVv-------------------------------------------------  207 (493)
                      +.. .++..+. .+.+.....+..++|+|||                                                 
T Consensus        84 ~~~-~~~~~g~-~~~~~~~~~~~~~~P~GVv~~I~pwn~P~~~~~~~~~~ALaaGN~vVlKps~~a~~t~~~~~~l~~~~  161 (862)
T PRK13805         84 SYK-DEKTVGV-IEEDDEFGIIEIAEPVGVIAGITPTTNPTSTAIFKALIALKTRNPIIFSFHPRAQKSSIAAAKIVLDA  161 (862)
T ss_pred             Hhc-CCCcccc-cCcCCCCCeEEEeecceEEEEEeCCCChhHHHHHHHHHHHHhCCcEEEECCcchHHHHHHHHHHHHHH
Confidence            432 1122222 2222344567899999999                                                 


Q ss_pred             --------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHH
Q 011130          208 --------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAA  279 (493)
Q Consensus       208 --------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa  279 (493)
                              |++|+|++.+.+.++.|+.|++||+|+||||+.+++    .++. +++|+++|+|||||+||++|||++.|+
T Consensus       162 l~~aG~p~g~v~vv~g~~~~~~~~L~~~~~vd~I~fTGs~~v~~----~a~~-~~~pv~~e~gGk~p~iV~~dADl~~Aa  236 (862)
T PRK13805        162 AVAAGAPKDIIQWIEEPSVELTNALMNHPGIALILATGGPGMVK----AAYS-SGKPALGVGAGNVPAYIDKTADIKRAV  236 (862)
T ss_pred             HHHcCcCcccEEEecCCCHHHHHHHHcCCCccEEEecCCHHHHH----HHHh-cCCCeEEECCCCCeEEEeCCCCHHHHH
Confidence                    899999987778899999999999999999999754    3444 789999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEE
Q 011130          280 ELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKL  359 (493)
Q Consensus       280 ~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v  359 (493)
                      +.|++++|+|+||.|+++++||||++++|+|+++|+++               .+|+++..+++++.++|+++++.|++.
T Consensus       237 ~~i~~~k~~n~GQ~C~a~~~v~V~~~i~d~f~~~l~~~---------------g~~l~~~~~~~~v~~~i~~a~~~~~~~  301 (862)
T PRK13805        237 NDILLSKTFDNGMICASEQAVIVDDEIYDEVKEEFASH---------------GAYFLNKKELKKLEKFIFGKENGALNA  301 (862)
T ss_pred             HHHHHhhhccCCCccCCCceEEEehhhHHHHHHHHHHh---------------CCeeCCHHHHHHHHHHHhhccCCCcCc
Confidence            99999999999999999999999999999999999885               268999999999999999987665543


Q ss_pred             -EeCCccc---CCCCceeeceE------EecCCCCccccccccccceEEEEEeCCHHHHHHHHHc----CCCCcEEEEec
Q 011130          360 -ETGGERL---GAKGYYIKPTV------FTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNA----SQYGLAAGVFT  425 (493)
Q Consensus       360 -~~gg~~~---~~~g~~~~Ptv------l~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~----~~~gl~a~v~t  425 (493)
                       ++||...   ...|+|++|++      +.++.++|++++ |+||||++|++|+|+||||+++|+    ++|||+++|||
T Consensus       302 ~~~g~~~~~~~~~~G~~~~p~~~~~i~~l~~v~~~~~~~~-E~fgPVl~v~~~~~~deAi~~~n~~~~~~~~gl~~~i~t  380 (862)
T PRK13805        302 DIVGQSAYKIAEMAGFKVPEDTKILIAEVKGVGESEPLSH-EKLSPVLAMYKAKDFEDAVEKAEKLVEFGGLGHTAVIYT  380 (862)
T ss_pred             cccCCCHHHHHHHcCCCCCCCCeEEEEecCCCCCCCcchh-cccCcEEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence             4466421   12488999987      677889999887 799999999999999999999988    48999999999


Q ss_pred             CCHHHHHHHHHhcceeEEEECCcC----------CCCCCCCccCCCCCCCCCcchHHHHHhhhhceEEEEeCCCCCCC
Q 011130          426 HNLDTANTLMRALRVGSVWINCFD----------VFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTALKNPAWL  493 (493)
Q Consensus       426 ~d~~~~~~~~~~l~~g~V~VN~~~----------~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~~~~~~~  493 (493)
                      +|.+++++|++++++|+||||.+.          .+.+.+|||| |.||.|..+|+.++++|++.|+|..+...+-||
T Consensus       381 ~d~~~~~~~~~~l~~g~v~vN~~~~~~~~~~~~~~~~~~~~fG~-G~~g~~~~~g~~g~~~~~~~k~v~~~~~~~~~~  457 (862)
T PRK13805        381 NDDELIKEFGLRMKACRILVNTPSSQGGIGDLYNKLAPSLTLGC-GSWGGNSVSENVGAKHLLNIKTVAKRRENMQWF  457 (862)
T ss_pred             CCHHHHHHHHhhCCccEEEEeCCccccccccccCCcCccccccc-cCCCCCcCCCCCCHHHhheeeeeeeccccceee
Confidence            999999999999999999999875          3578899997 999999999999999999999999888777775


No 127
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=100.00  E-value=4.2e-59  Score=481.55  Aligned_cols=321  Identities=19%  Similarity=0.263  Sum_probs=283.3

Q ss_pred             HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHH-HHHHHHHhhHH
Q 011130          105 VNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTR-LFRYYAGWADK  183 (493)
Q Consensus       105 v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~-~l~~~a~~~~~  183 (493)
                      +++|+++|++||+  .|+++|.++|.++|++++++|+++.++|++++++|+|||+.+++..|+..+++ .+++++..  +
T Consensus         1 ~~~av~~A~~A~~--~W~~~~~~eR~~~L~~~a~~l~~~~eela~~~~~E~Gk~~~ea~~~e~~~~~~~~~~~~~~~--~   76 (436)
T cd07122           1 VDELVERARKAQR--EFATFSQEQVDKIVEAVAWAAADAAEELAKMAVEETGMGVVEDKVIKNHFASEYVYNDIKDM--K   76 (436)
T ss_pred             ChHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcC--c
Confidence            4789999999999  99999999999999999999999999999999999999999887547777777 78888753  2


Q ss_pred             hcCccCCCCCCceeEEEeeeeeeE--------------------------------------------------------
Q 011130          184 IQGLTAPADGPYHVQTLHEPIGVA--------------------------------------------------------  207 (493)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~PlGVv--------------------------------------------------------  207 (493)
                      ..+.. ........++.++|+|||                                                        
T Consensus        77 ~~g~~-~~~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~~~~~~~~~~~~~l~eaG~P  155 (436)
T cd07122          77 TVGVI-EEDEEKGIVEIAEPVGVIAALIPSTNPTSTAIFKALIALKTRNAIIFSPHPRAKKCSIEAAKIMREAAVAAGAP  155 (436)
T ss_pred             ceeee-ccCCCCCeEEEeecccEEEEEeCCCCchHHHHHHHHHHHHcCCcEEEECCcchhhHHHHHHHHHHHHHHHcCCC
Confidence            22221 222234567899999998                                                        


Q ss_pred             -eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHH
Q 011130          208 -GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYAL  286 (493)
Q Consensus       208 -gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~  286 (493)
                       |++|+|++.+.+.++.|+.||+|++|+||||+++++.    ++. +++|+++|+|||||+||++|||+|.|++.+++++
T Consensus       156 ~g~v~~v~g~~~~~~~~l~~~~~v~~v~ftGs~~v~~~----a~~-~~~~~~~elgG~~p~iV~~dADl~~A~~~i~~~~  230 (436)
T cd07122         156 EGLIQWIEEPSIELTQELMKHPDVDLILATGGPGMVKA----AYS-SGKPAIGVGPGNVPAYIDETADIKRAVKDIILSK  230 (436)
T ss_pred             chhEEEecCCChHHHHHHHcCCCcCEEEEcCCHHHHHH----HHh-cCCCEEEecCCCCeEEEcCCCCHHHHHHHHHHHh
Confidence             8999999877778899999999999999999997653    444 7899999999999999999999999999999999


Q ss_pred             HhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhc-------ccCCC-CCCCCccccCCCHHHHHHHHHHHHHHHhCCCE
Q 011130          287 FFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKR-------VVGDP-FKGGIQQGPQIDSEQFEKILKYIRSGVDGGAK  358 (493)
Q Consensus       287 ~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~-------~vg~p-~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~  358 (493)
                      |.|+||.|++++|||||+++||+|+++|+++...+       ++|++ .+.++.+||+++..+++++..++..++..|++
T Consensus       231 f~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~~~~~~~~v~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~ga~  310 (436)
T cd07122         231 TFDNGTICASEQSVIVDDEIYDEVRAELKRRGAYFLNEEEKEKLEKALFDDGGTLNPDIVGKSAQKIAELAGIEVPEDTK  310 (436)
T ss_pred             hccCCCCCCCCCEEEEechhHHHHHHHHHHhcceecCHHHHHHHHHHhhcCCCCcCccccCcCHHHHHHHcCCCCCCCCe
Confidence            99999999999999999999999999999998877       88998 46788899999999988888887777777777


Q ss_pred             EEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcC----CCCcEEEEecCCHHHHHHH
Q 011130          359 LETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNAS----QYGLAAGVFTHNLDTANTL  434 (493)
Q Consensus       359 v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~----~~gl~a~v~t~d~~~~~~~  434 (493)
                      +++++              +.+++++|+++ +|.||||++|++|+|+||||+++|++    +|||+++|||+|.+.++++
T Consensus       311 vl~~~--------------~~~v~~~~~~~-~E~FGPVl~v~~~~~~~eAi~~aN~~~~~~~~GLsa~V~T~d~~~a~~~  375 (436)
T cd07122         311 VLVAE--------------ETGVGPEEPLS-REKLSPVLAFYRAEDFEEALEKARELLEYGGAGHTAVIHSNDEEVIEEF  375 (436)
T ss_pred             EEEEe--------------cCCCCCCCcch-hcccCCeEEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCHHHHHHH
Confidence            77555              35777889987 56799999999999999999999997    7999999999999999999


Q ss_pred             HHhcceeEEEECCcCC
Q 011130          435 MRALRVGSVWINCFDV  450 (493)
Q Consensus       435 ~~~l~~g~V~VN~~~~  450 (493)
                      ++++++|+||||+++.
T Consensus       376 ~~~l~aG~V~IN~~~~  391 (436)
T cd07122         376 ALRMPVSRILVNTPSS  391 (436)
T ss_pred             HhhCCceEEEEeCCcc
Confidence            9999999999998765


No 128
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of  NAD(P)+-dependent enzymes, in general, oxidize a wide range of  endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an  important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=100.00  E-value=9.4e-55  Score=445.43  Aligned_cols=310  Identities=51%  Similarity=0.804  Sum_probs=288.7

Q ss_pred             HHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHHHHHHhhHHhcCccCC
Q 011130          111 AARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP  190 (493)
Q Consensus       111 ~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~~~a~~~~~~~~~~~~  190 (493)
                      +|+++++  .|++++.++|.++|+++++.|.++.++|++++++|+|||+.++.. |+..+++.+++++.+.+++.+...+
T Consensus         2 ~a~~a~~--~w~~~~~~~R~~~l~~l~~~l~~~~~~l~~~~~~e~Gk~~~~~~~-ev~~~~~~l~~~~~~~~~~~~~~~~   78 (367)
T cd06534           2 AARAAFK--AWAALPPAERAAILRKIADLLEERREELAALETLETGKPIEEALG-EVARAIDTFRYAAGLADKLGGPELP   78 (367)
T ss_pred             hHHHHHH--HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcCCccc
Confidence            5788998  999999999999999999999999999999999999999999875 9999999999999988777653222


Q ss_pred             -CCCCceeEEEeeeeeeE-----------------------------------------------------eEEEeeeCC
Q 011130          191 -ADGPYHVQTLHEPIGVA-----------------------------------------------------GVLNIVSGY  216 (493)
Q Consensus       191 -~~~~~~~~~~~~PlGVv-----------------------------------------------------gvv~vv~~~  216 (493)
                       ...+...+..++|+|||                                                     |++++++++
T Consensus        79 ~~~~~~~~~~~~~p~Gvv~~i~p~n~p~~~~~~~~~~aL~~GN~vilk~s~~~~~~~~~l~~~l~~ag~p~~~v~~~~~~  158 (367)
T cd06534          79 SPDPGGEAYVRREPLGVVGVITPWNFPLLLAAWKLAPALAAGNTVVLKPSELTPLTALALAELLQEAGLPPGVVNVVPGG  158 (367)
T ss_pred             ccCCCceeEEEEEeeeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHhcCCCcCeEEEEEcC
Confidence             23345678899999998                                                     889999997


Q ss_pred             ccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccC
Q 011130          217 GPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCA  296 (493)
Q Consensus       217 ~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a  296 (493)
                      +.+.++.|..|+++|.|.||||+++++.|.+.+++ +++|+++|+||+|++||++|+|++.|++.+++++|.++||.|++
T Consensus       159 ~~~~~~~l~~~~~vd~v~~tGs~~~~~~v~~~~~~-~~~~~~~e~~g~~~~iV~~~ad~~~aa~~i~~~~~~~~gq~C~s  237 (367)
T cd06534         159 GDEVGAALLSHPRVDKISFTGSTAVGKAIMKAAAE-NLKPVTLELGGKSPVIVDEDADLDAAVEGAVFGAFFNAGQICTA  237 (367)
T ss_pred             chhHHHHHhcCCCcCEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCC
Confidence            76688999999999999999999999999999988 78999999999999999999999999999999999999999999


Q ss_pred             CCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeece
Q 011130          297 GSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPT  376 (493)
Q Consensus       297 ~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Pt  376 (493)
                      +++||||++++|+|+++|+                                                            |
T Consensus       238 ~~~v~v~~~~~~~f~~~l~------------------------------------------------------------t  257 (367)
T cd06534         238 ASRLLVHESIYDEFVEKLV------------------------------------------------------------T  257 (367)
T ss_pred             CcEEEEcHHHHHHHHHhhc------------------------------------------------------------e
Confidence            9999999999999999987                                                            6


Q ss_pred             EEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCcCCC-CCCC
Q 011130          377 VFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCFDVF-DAAI  455 (493)
Q Consensus       377 vl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~~~~-~~~~  455 (493)
                      |+.+++++++++++|+||||++|++|++++|+|+++|+.++||+++|||+|.+.+++++..+++|+|+||+++.. .+.+
T Consensus       258 l~~~~~~~~~~~~~E~fgPv~~v~~~~~~~eai~~~n~~~~gl~~~i~t~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~  337 (367)
T cd06534         258 VLVDVDPDMPIAQEEIFGPVLPVIRFKDEEEAIALANDTEYGLTAGVFTRDLNRALRVAERLRAGTVYINDSSIGVGPEA  337 (367)
T ss_pred             eeeCCCCCCccccCCccCceEEEEecCCHHHHHHHHhCCCCCCeEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCC
Confidence            667778889999999999999999999999999999999999999999999999999999999999999998877 7889


Q ss_pred             CccCCCCCCCCCcchHHHHHhhhhceEEE
Q 011130          456 PFGGYKQSGQGREKGSYSLSNYLQVKAVV  484 (493)
Q Consensus       456 pfGG~~~SG~G~~~g~~~l~~~~~~k~v~  484 (493)
                      ||||.|+||+|+++|++++++|++.|+++
T Consensus       338 pfgg~~~sG~g~~~g~~~~~~~~~~k~i~  366 (367)
T cd06534         338 PFGGVKNSGIGREGGPYGLEEYTRTKTVV  366 (367)
T ss_pred             CCCCcccCccCCCChHHHHHHhceEEEEe
Confidence            99999999999999999999999999874


No 129
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of  endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an  important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase.  All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=100.00  E-value=1.8e-55  Score=453.99  Aligned_cols=322  Identities=19%  Similarity=0.179  Sum_probs=284.7

Q ss_pred             HHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhh----------hccHHHHHHHHHHHHH
Q 011130          110 SAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSA----------QTEVPMTTRLFRYYAG  179 (493)
Q Consensus       110 ~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~----------~~Ev~~~~~~l~~~a~  179 (493)
                      ++|++||+  .|+++|..+|.++|++++++|++++++|+++++.|+|||+.+..          ..|+..+++.+++++.
T Consensus         1 ~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~~~~~~~~~~~~~~~ev~~~~~~~~~~a~   78 (397)
T cd07077           1 ESAKNAQR--TLAVNHDEQRDLIINAIANALYDTRQRLASEAVSERGAYIRSLIANWIAMMGCSESKLYKNIDTERGITA   78 (397)
T ss_pred             ChHHHHHH--HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            36889999  99999999999999999999999999999999999999965432          1278889999999987


Q ss_pred             hhHHhcCccCCCCCCceeEEEeeeeeeE----------------------------------------------------
Q 011130          180 WADKIQGLTAPADGPYHVQTLHEPIGVA----------------------------------------------------  207 (493)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~PlGVv----------------------------------------------------  207 (493)
                      ...+..+...+.  ....++.++|+|||                                                    
T Consensus        79 ~~~~~~~~~~~~--~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~aL~aGN~vilKps~~~p~~~~~l~~~~~~~~~~g  156 (397)
T cd07077          79 SVGHIQDVLLPD--NGETYVRAFPIGVTMHILPSTNPLSGITSALRGIATRNQCIFRPHPSAPFTNRALALLFQAADAAH  156 (397)
T ss_pred             hcCcccceEecC--CCceEEEEecceEEEEEeCCCCchHHHHHHHHHHHcCCcEEEEcCcchhhHHHHHHHHHHHHhhcC
Confidence            655554433332  23568899999998                                                    


Q ss_pred             ---eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHH
Q 011130          208 ---GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHY  284 (493)
Q Consensus       208 ---gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~  284 (493)
                         |++++|++.+.+.+..|+.||++|+|+||||+++++.+.+.+.   .+|+++|+||++|+||++|||++.|++.+++
T Consensus       157 ~p~~~v~~v~~~~~~~~~~l~~~~~vd~v~ftGs~~~~~~v~~~~~---~~~~~~~~gg~~~~iv~~dad~~~a~~~~~~  233 (397)
T cd07077         157 GPKILVLYVPHPSDELAEELLSHPKIDLIVATGGRDAVDAAVKHSP---HIPVIGFGAGNSPVVVDETADEERASGSVHD  233 (397)
T ss_pred             CCCceEEEecCCCHHHHHHHHcCCCCCEEEecCCHHHHHHHHHcCC---CCceEEecCCcceEEEcCCCCHHHHHHHHHH
Confidence               7899999867778899999999999999999999999988663   4899999999999999999999999999999


Q ss_pred             HHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCc
Q 011130          285 ALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGE  364 (493)
Q Consensus       285 ~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~  364 (493)
                      ++|+| ||.|+++++||||+++||+|+++|++++..                                  .|++++.||+
T Consensus       234 ~~~~~-GQ~C~a~~~v~V~~~i~d~~~~~l~~~~~~----------------------------------~G~~~~~g~~  278 (397)
T cd07077         234 SKFFD-QNACASEQNLYVVDDVLDPLYEEFKLKLVV----------------------------------EGLKVPQETK  278 (397)
T ss_pred             hhccC-CccCCCCeEEEEehhhhHHHHHHHHHHHHh----------------------------------cCcCcCCCce
Confidence            99999 999999999999999999999999997753                                  4677777663


Q ss_pred             ccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHH----HHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcce
Q 011130          365 RLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLD----EVIQRSNASQYGLAAGVFTHNLDTANTLMRALRV  440 (493)
Q Consensus       365 ~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~----eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~  440 (493)
                           ++|+.||      ++|.++++|+||||++|++|+|++    +|++++|+++|||+++|||+|.+.+.++++++++
T Consensus       279 -----~~~~~pt------~~~~~~~~E~FgPvl~v~~~~~~~eai~~ai~~~n~~~~gl~~~Ift~d~~~~~~~~~~l~~  347 (397)
T cd07077         279 -----PLSKETT------PSFDDEALESMTPLECQFRVLDVISAVENAWMIIESGGGPHTRCVYTHKINKVDDFVQYIDT  347 (397)
T ss_pred             -----eeEEecc------CCCChhhhhhhCceeEEEEEcchHHHHHHHHHHHHhcCCCCceEEEeCCHHHHHHHHHhCCE
Confidence                 4677776      688999999999999999999996    6667889999999999999999999999999999


Q ss_pred             eEEEECCcCCCC--CCCCccCCC--CCCCCCcch-HHHHHhhhhceEEE
Q 011130          441 GSVWINCFDVFD--AAIPFGGYK--QSGQGREKG-SYSLSNYLQVKAVV  484 (493)
Q Consensus       441 g~V~VN~~~~~~--~~~pfGG~~--~SG~G~~~g-~~~l~~~~~~k~v~  484 (493)
                      |.|+||+.....  +.+||||.+  .||+|+++| .+++++|++.|+++
T Consensus       348 G~v~vN~~~~~~~~~~~~~gg~~~~~SG~g~~~g~~~~~~~~~~~k~v~  396 (397)
T cd07077         348 ASFYPNESSKKGRGAFAGKGVERIVTSGMNNIFGAGVGHDALRPLKRLV  396 (397)
T ss_pred             EEEEEeCCccCCCccccCCCcceEEEccccCCCCCCCChHHhcceeEee
Confidence            999999876544  678999999  899999999 99999999999986


No 130
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=100.00  E-value=1.3e-54  Score=473.16  Aligned_cols=329  Identities=18%  Similarity=0.194  Sum_probs=278.7

Q ss_pred             HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChhhhhhc---------------cHH
Q 011130          104 DVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQT---------------EVP  168 (493)
Q Consensus       104 ~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e~Gk~~~~a~~~---------------Ev~  168 (493)
                      +++..+++|++||+  .|+.+|.++|.++|++++++|++|.++|+    .++||++.+++..               |+.
T Consensus       287 ~~~~~~~~A~~A~~--~w~~~~~~~R~~~L~~la~~l~~~~eei~----~e~gkdl~~a~~~~~~~~~~~el~~~~~ei~  360 (715)
T TIGR01092       287 GERDMAVAARESSR--MLQALSSEQRKEILHDIADALEDNEDEIL----AENKKDVAAAQGAGYAASLVARLSMSPSKIS  360 (715)
T ss_pred             HHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHhcCcchhHHHHHhCCHHHHH
Confidence            38888999999999  99999999999999999999999999997    5888888776531               366


Q ss_pred             HHHHHHHHHHHhhHHhcCccCC---CCCCceeEEEeeeeeeE--------------------------------------
Q 011130          169 MTTRLFRYYAGWADKIQGLTAP---ADGPYHVQTLHEPIGVA--------------------------------------  207 (493)
Q Consensus       169 ~~~~~l~~~a~~~~~~~~~~~~---~~~~~~~~~~~~PlGVv--------------------------------------  207 (493)
                      .++..++++++. .+..+...+   ...+...+..++|+|||                                      
T Consensus       361 ~~~~~l~~~a~~-~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwNP~~~~~~~~~ALaaGN~vvlKpse~tp~t~~  439 (715)
T TIGR01092       361 SLAISLRQLAAM-EDPIGRVLKRTRIADNLILEKTSVPIGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAARSNA  439 (715)
T ss_pred             HHHHHHHHHhcC-CCcccccccccccCCCceeEEEEeeceEEEEEeCCChHHHHHHHHHHHHhCCEEEEcCcccchHHHH
Confidence            778888888873 333333222   11233457889999999                                      


Q ss_pred             ------------e----EEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEcc
Q 011130          208 ------------G----VLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCE  271 (493)
Q Consensus       208 ------------g----vv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~  271 (493)
                                  |    ++++|++ +.++++.|..|++||+|+||||+.+|+.|++.++    +|+++|+|||||+||++
T Consensus       440 ~l~~l~~~alp~g~~~~~~~~v~~-~~~~~~~l~~~~~vd~I~fTGS~~vG~~i~~~A~----~pv~lElgGk~p~iV~~  514 (715)
T TIGR01092       440 ILHKVITEAIPIHVGKKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKKSTK----IPVLGHADGICHVYVDK  514 (715)
T ss_pred             HHHHHHHHHcCCCCCCcEEEEeCC-hHHHHHHHhcCCCccEEEEcCCHHHHHHHHHhCC----CCEEEEcCCcceEEECC
Confidence                        4    7899985 5677888999999999999999999999998763    89999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHH
Q 011130          272 DADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRS  351 (493)
Q Consensus       272 daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~  351 (493)
                      |||++.|++.++.+.|.+ ||.|++++|||||++++|+                         |        .+.+++++
T Consensus       515 dADl~~A~~~i~~~~~~~-GQ~C~a~~rvlV~~~i~d~-------------------------~--------~~~~~v~~  560 (715)
T TIGR01092       515 SASVDMAKRIVRDAKCDY-PAACNAMETLLVHKDLLRN-------------------------G--------LLDDLIDM  560 (715)
T ss_pred             CCCHHHHHHHHHHHhCCC-CCccccCcEEEEehhhccc-------------------------h--------hHHHHHHH
Confidence            999999987777776555 9999999999999999985                         0        25677788


Q ss_pred             HHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHH
Q 011130          352 GVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTA  431 (493)
Q Consensus       352 a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~  431 (493)
                      ++++|++++ ||....   .|+.     ..+++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.+.+
T Consensus       561 ~~~~Ga~l~-Gg~~~~---~~~~-----~~~~~~~i~~eE~FGPvl~v~~~~~~deAi~~~N~~~~gLa~~ift~d~~~a  631 (715)
T TIGR01092       561 LRTEGVTIH-GGPRFA---AYLT-----FNISETKSFRTEYSSLACTVEIVDDVYDAIDHIHKHGSAHTDCIVTEDENVA  631 (715)
T ss_pred             HHHCCCEEE-CCcchh---heec-----cCCCCchhhhccccCceEEEEEECCHHHHHHHHHcCCCCCeEEEEeCCHHHH
Confidence            888999985 775422   2332     1356899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcceeEEEECCcCCCCCCCCccCCCCCCCCC----cchHHHHHhhhhceEEEEeC
Q 011130          432 NTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGR----EKGSYSLSNYLQVKAVVTAL  487 (493)
Q Consensus       432 ~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G~----~~g~~~l~~~~~~k~v~~~~  487 (493)
                      ++|++++++|.||||+++...+..||||+|+||+|+    ++|++++++|++.|+|++..
T Consensus       632 ~~~~~~i~sG~V~vN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~g~  691 (715)
T TIGR01092       632 EFFLQHVDSAAVFHNASTRFSDGFRFGLGAEVGISTSRIHARGPVGVEGLLTTRWLLRGK  691 (715)
T ss_pred             HHHHHhCCeeEEEEeCCCCCCCCCCCcCccccccccCCCCCCChhHHHHhceEEEEEECC
Confidence            999999999999999876666788999999999995    48999999999999998763


No 131
>TIGR00407 proA gamma-glutamyl phosphate reductase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.
Probab=100.00  E-value=1.3e-54  Score=443.65  Aligned_cols=323  Identities=19%  Similarity=0.174  Sum_probs=272.5

Q ss_pred             HHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHcCCCh------hhhhhccHHHHHHHHHHHHH
Q 011130          112 ARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAAL------ETWDNGKPF------EQSAQTEVPMTTRLFRYYAG  179 (493)
Q Consensus       112 A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~------~~~e~Gk~~------~~a~~~Ev~~~~~~l~~~a~  179 (493)
                      |++||+  .|+++|..+|.++|++++++|++|.++|+++      +++|+|||.      .++. .|+..+++.++|+++
T Consensus         1 a~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~a~~~E~Gk~~~~~~~l~~a~-~ev~~~~~~~~~~a~   77 (398)
T TIGR00407         1 AKQAAN--ILAQLSTAEKNDALSKIADGLEAQAPAILAANAKDIAVAKENGLADALLDRLLLTE-GRLKGIADGVKDVIE   77 (398)
T ss_pred             ChhHHH--HHHhCCHHHHHHHHHHHHHHHHhChHHHHHHhHHHHHHHHHcCCCHHHHHHHcCCH-HHHHHHHHHHHHHhc
Confidence            577888  8999999999999999999999999999999      999999994      2344 489999999999998


Q ss_pred             hhHHhcCccCCC---CCCceeEEEeeeeeeE-------------------------------------------------
Q 011130          180 WADKIQGLTAPA---DGPYHVQTLHEPIGVA-------------------------------------------------  207 (493)
Q Consensus       180 ~~~~~~~~~~~~---~~~~~~~~~~~PlGVv-------------------------------------------------  207 (493)
                      .++.. +...+.   ..+...++.++|+|||                                                 
T Consensus        78 ~a~~~-g~~~~~~~~~~~~~~~~~~~PlGVV~~I~pw~p~~~~~~~~~ALaaGN~vVlKps~~tp~~~~~l~~~~~~al~  156 (398)
T TIGR00407        78 LADPV-GKVIDGRELDSGLTLERVRVPLGVLGVIYEARPNVTVDIASLCLKTGNAVILRGGKEAVRSNKALVEVIQDALA  156 (398)
T ss_pred             CCCCC-cccccceecCCCceEEEEEeCcEEEEEEeCCCchHHHHHHHHHHHhCCeEEECCChhhHHHHHHHHHHHHHHHH
Confidence            88654 443332   2345678899999999                                                 


Q ss_pred             ------eEEEeeeCCc-cchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHH
Q 011130          208 ------GVLNIVSGYG-PTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAE  280 (493)
Q Consensus       208 ------gvv~vv~~~~-~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~  280 (493)
                            |++|+|++.+ .++++.|..||+||+|+||||+.+|+.+++.    ..+|+++|+|||||+||++|||+|.|++
T Consensus       157 eaGlP~gvv~~v~g~~~~~~~~~l~~~~~v~~v~fTGs~~vg~~~~~~----~~~~~~~e~gGk~p~iV~~dADl~~Aa~  232 (398)
T TIGR00407       157 QTGLPVGAVQLIETPSRELVSELLDLDEYIDLLIPRGGNGLVRLIKQT----STIPVLGHGDGICHIYLDESADLIKAIK  232 (398)
T ss_pred             HcCCChhHEEEecCCCHHHHHHHHhCCCCeeEEEecCCHHHHHHHHHh----CCCCEEEecCCcceEEEeCCCCHHHHHH
Confidence                  8999999754 4578899999999999999999999988764    4579999999999999999999999999


Q ss_pred             HHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEE
Q 011130          281 LAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLE  360 (493)
Q Consensus       281 ~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~  360 (493)
                      .+++++|.+ ||.|++++|+|||+++||+|+++|++++.++++        .+++      .+.+.+++..    |    
T Consensus       233 ~iv~~~~~~-GQ~C~a~~rv~V~~~v~d~f~~~l~~~~~~~~~--------~~~~------~~~i~~~v~~----g----  289 (398)
T TIGR00407       233 VIVNAKTQR-PSTCNAIETLLVNKAIAREFLPVLENQLLEKGV--------TIHA------DAYALKLLEL----G----  289 (398)
T ss_pred             HHHhhhcCC-CCcccccceEEEeHHHHHHHHHHHHHHHHhcCC--------EEec------CHHHHHHHhc----c----
Confidence            999999965 999999999999999999999999999987643        1221      1233333321    1    


Q ss_pred             eCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcce
Q 011130          361 TGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRV  440 (493)
Q Consensus       361 ~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~  440 (493)
                        |           ||++ +  .+|++++||+||||++|++|+|++|||+++|+++|||+++|||+|.+.++++++++++
T Consensus       290 --~-----------~tv~-~--~~~~i~~eE~FgPvl~v~~~~~~~eAi~~aN~~~~GL~a~I~t~d~~~a~~~a~~i~~  353 (398)
T TIGR00407       290 --P-----------ATEA-I--VCKTDFDKEFLSLDLSVKIVESLEAAIQHINQYGTQHSDAILTENKANAEQFQNGVDS  353 (398)
T ss_pred             --C-----------cccc-c--cccccccchhhCceeEEEEECCHHHHHHHHHHhCCCCceEEEeCCHHHHHHHHHhCCe
Confidence              1           3444 2  2378999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEECCcCCCCCCCCccCCCCCC----CCCcchHHHHHhhhhce
Q 011130          441 GSVWINCFDVFDAAIPFGGYKQSG----QGREKGSYSLSNYLQVK  481 (493)
Q Consensus       441 g~V~VN~~~~~~~~~pfGG~~~SG----~G~~~g~~~l~~~~~~k  481 (493)
                      |.|+||+++.+.+..|||=-.+-|    ..+..|+.+++.|+..|
T Consensus       354 G~v~iN~~~~~~~~~pfG~~~~~~~~~~~~~~rg~~~~~~~~~~~  398 (398)
T TIGR00407       354 AAVYHNASTRFTDGFRFGFGAEVGISTQKLHARGPMGLEALTSYK  398 (398)
T ss_pred             eEEEEeCCCCcCCCcccccceeeEEecCCCcCCCCcCHHHhcCCC
Confidence            999999988888888998333323    35677999999998876


No 132
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=99.96  E-value=1.8e-28  Score=239.26  Aligned_cols=334  Identities=20%  Similarity=0.248  Sum_probs=257.4

Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------cCCChhhhhhccHHHHHHHHHH
Q 011130          103 EDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWD------NGKPFEQSAQTEVPMTTRLFRY  176 (493)
Q Consensus       103 ~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~e------~Gk~~~~a~~~Ev~~~~~~l~~  176 (493)
                      .++....++||+|..  .+..++..+|.+.|.++++.|+++.++|.++..+|      +|.+  ++..+.+...-..++.
T Consensus         3 ~~~~~~~~~Ak~A~~--~La~~st~~Kn~aL~a~A~~L~~~~~~IL~AN~~Dl~~are~gl~--~~m~DRL~L~~~Ri~~   78 (417)
T COG0014           3 SELEELGKRAKAASR--KLATLSTEEKNRALLAMADALEAARAEILAANAKDLAAARENGLS--EAMLDRLALTPSRIEA   78 (417)
T ss_pred             hHHHHHHHHHHHHHH--HHhhcChhhHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHcCCc--HHHHHHHcCCHHHHHH
Confidence            457788899999998  89999999999999999999999999999988765      4443  2222223333333333


Q ss_pred             HHHhhHHhcCccCC---------CCCCceeEEEeeeeeeE----------------------------------------
Q 011130          177 YAGWADKIQGLTAP---------ADGPYHVQTLHEPIGVA----------------------------------------  207 (493)
Q Consensus       177 ~a~~~~~~~~~~~~---------~~~~~~~~~~~~PlGVv----------------------------------------  207 (493)
                      .+.-.+++.....|         .+.+...+..+.|+||+                                        
T Consensus        79 ma~gl~~Va~L~DPvGev~~~~~~~nGL~i~~~rvPLGVigvIYEsRPnVtvdaaaLclKsGNAvILRGGsea~~Sn~ai  158 (417)
T COG0014          79 MADGLRQVAALPDPVGEVIDGWTLPNGLQIYRVRVPLGVIGVIYESRPNVTVDAAALCLKSGNAVILRGGSEAIHSNAAI  158 (417)
T ss_pred             HHHHHHHHhcCCCchHhhhccccCCCCCEEEEEEccceEEEEEEecCCccHHHHHHHHHhcCCEEEEeCcHHHhhhHHHH
Confidence            33333333222222         23466788999999998                                        


Q ss_pred             ---------------eEEEeeeCCc-cchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEcc
Q 011130          208 ---------------GVLNIVSGYG-PTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCE  271 (493)
Q Consensus       208 ---------------gvv~vv~~~~-~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~  271 (493)
                                     +.+++|+..+ .++.+.|..+..||+|+-.||....+.|.+.+.    .||+-.+-|+|.++|+.
T Consensus       159 ~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~l~~yiD~iIPRGg~~Li~~v~~~a~----vPVi~~~~G~CHiyvd~  234 (417)
T COG0014         159 VEVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDLVIPRGGAGLIRRVVENAT----VPVIEHGVGNCHIYVDE  234 (417)
T ss_pred             HHHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHhhcCceeEEEcCCcHHHHHHHHhCCc----CCEEecCcceEEEEecc
Confidence                           5678888654 345666777788999999999998888877543    58888888999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHH
Q 011130          272 DADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRS  351 (493)
Q Consensus       272 daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~  351 (493)
                      +||+|.|.+.++.++....+ .|++.+.++||+.+.++|+.+|.+.+...                              
T Consensus       235 ~ADld~A~~ii~nAKtqrPs-~CNA~EtLLVh~~ia~~fLp~l~~~l~~~------------------------------  283 (417)
T COG0014         235 SADLDKALKIIVNAKTQRPS-VCNAAETLLVHRAIAKSFLPKLANALQEA------------------------------  283 (417)
T ss_pred             cCCHHHHHHHHHcccCCCCc-ccchHHHHHcCHHHHHHhHHHHHHHHHhc------------------------------
Confidence            99999999999999999998 99999999999999999999998877632                              


Q ss_pred             HHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHH
Q 011130          352 GVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTA  431 (493)
Q Consensus       352 a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~  431 (493)
                          |.++.......     -+-|..  ..+....-+..|..-+++.|..+++++|||++||..+.+|+-+|.|+|.+.+
T Consensus       284 ----gvelr~d~~~~-----~~~~~~--~~~A~e~Dw~tEyLd~ilavkvVd~ld~AI~HIn~y~S~HsdaIiTe~~~~a  352 (417)
T COG0014         284 ----GVELRGDAEAL-----ALLPDA--VKPATEEDWDTEYLDLILAVKVVDSLDEAIAHINTYGSGHSDAIITEDYANA  352 (417)
T ss_pred             ----CeEEEcCHHHH-----Hhcccc--CCCCchhhHHHHhhhheeEEEEeCCHHHHHHHHHHhCCCCCcceeeCCHHHH
Confidence                22222111100     000000  0122233467899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcceeEEEECCcCCCCCCCCccCCCCCC----CCCcchHHHHHhhhhceEEEEe
Q 011130          432 NTLMRALRVGSVWINCFDVFDAAIPFGGYKQSG----QGREKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       432 ~~~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG----~G~~~g~~~l~~~~~~k~v~~~  486 (493)
                      ++|...+++..||||.++.|..+.-||=-.+-|    ..+..|+-||+.+|..|+++..
T Consensus       353 ~~F~~~VDSAaVyvNASTRFtDG~~fG~GaEiGISTqKlHARGPmGLe~LTs~Kyiv~G  411 (417)
T COG0014         353 ERFVNEVDSAAVYVNASTRFTDGGQFGLGAEIGISTQKLHARGPMGLEALTSYKYIVRG  411 (417)
T ss_pred             HHHHhhcchheEEEecccccccCccccCceEEEeecCcccCCCCCChhhhcceeEEEeC
Confidence            999999999999999999998777775333333    4578899999999999998764


No 133
>KOG4165 consensus Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=99.90  E-value=7.1e-23  Score=193.37  Aligned_cols=329  Identities=19%  Similarity=0.228  Sum_probs=247.1

Q ss_pred             HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HcCCChhhhhhccHHHHHHHHHHHH
Q 011130          105 VNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETW------DNGKPFEQSAQTEVPMTTRLFRYYA  178 (493)
Q Consensus       105 v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~~~~~ela~~~~~------e~Gk~~~~a~~~Ev~~~~~~l~~~a  178 (493)
                      +++..+.||++++  .++.++.++|.++|.+++++|..+..+|.++...      +.|..  +.....+...-..+..++
T Consensus         2 ~e~~a~~aR~a~r--~LqaLs~e~R~~il~~iad~L~~~~~~I~~aN~~Dla~Ake~GL~--~sll~RL~l~~~K~~sl~   77 (433)
T KOG4165|consen    2 VEEMAENAREAGR--ILQALSNEDRADILHHIADLLVDNEKEILAANKKDLAEAKEAGLA--ESLLKRLDLSPGKISSLA   77 (433)
T ss_pred             HHHHHHHHHHHhh--HHHhcChhhHHHHHHHHHHHHHhhHHHHHhcchhhHHHHHhcCcc--HHHHHHhcCChHHHHHHH
Confidence            3556788999998  8999999999999999999999988888776544      45532  221112222222333333


Q ss_pred             HhhHHhcCccCC---------CCCCceeEEEeeeeeeE------------------------------------------
Q 011130          179 GWADKIQGLTAP---------ADGPYHVQTLHEPIGVA------------------------------------------  207 (493)
Q Consensus       179 ~~~~~~~~~~~~---------~~~~~~~~~~~~PlGVv------------------------------------------  207 (493)
                      .-.+++.....|         ...+...+....|+||.                                          
T Consensus        78 ~g~~~ia~~edpvGRVl~~~~ladgL~L~qvt~PiGvLLVIFESRPd~l~qiasLAi~SgN~llLKGGkEa~~Sn~~L~~  157 (433)
T KOG4165|consen   78 AGLRQIAELEDPVGRVLKKTRLADGLELEQVTVPIGVLLVIFESRPDCLPQIASLAIASGNGLLLKGGKEAAHSNAALHK  157 (433)
T ss_pred             HHHHHHHhcccchhhheeeeeccCCceEEEeeccceEEEEEeccCchHHHHHHHHHHhcCCeEeecCchhhhhhHHHHHH
Confidence            222222221111         22344556677899986                                          


Q ss_pred             -------------eEEEeeeCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCC
Q 011130          208 -------------GVLNIVSGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDAD  274 (493)
Q Consensus       208 -------------gvv~vv~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daD  274 (493)
                                   +.+++|+. ..++.+.|..+..||+|.-.||....+.|...    +.+||..+-.|.+.++|++|||
T Consensus       158 ~v~~al~~~~~~~~aV~LV~s-REev~dLl~ld~~IDLvIPRGSs~LVr~Ik~~----tkIPVLGHA~GichvYvd~dad  232 (433)
T KOG4165|consen  158 LVQEALGTHGGPGKAVQLVTS-REEVSDLLKLDDYIDLVIPRGSSDLVRSIKDT----TKIPVLGHAEGICHVYVDKDAD  232 (433)
T ss_pred             HHHHHhhhccCchhhhhheec-HHHHHHHhhhhhheeEEecCCcHHHHHHHhhc----ccCcccccccceeEEEeccccC
Confidence                         46788876 57788888888899999999999999988664    4489999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCcccCCCeeEecchh-HHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHH
Q 011130          275 VDKAAELAHYALFFNQGQCCCAGSRTFVHESV-YDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGV  353 (493)
Q Consensus       275 l~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i-~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~  353 (493)
                      +++|.+.+..+++.+.. .|++.+.+++|++. ...|++.|...+.                                  
T Consensus       233 ~~kA~riv~DaK~dYPA-aCNAmETLLIh~dl~~~~~~~~l~~~l~----------------------------------  277 (433)
T KOG4165|consen  233 LDKAKRIVRDAKCDYPA-ACNAMETLLIHKDLEQSPFFDDLINMLK----------------------------------  277 (433)
T ss_pred             HHHHHHHHhcccCCCch-hhhhHHHHhccHhhhhcchHHHHHHHHH----------------------------------
Confidence            99999999999998886 89999999999984 3455555544332                                  


Q ss_pred             hCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHH
Q 011130          354 DGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANT  433 (493)
Q Consensus       354 ~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~  433 (493)
                      ++|.++.+|.+ ......|        .++...-++.|.-.-.+++-.+++.++||+.||..+.+++-+|.|+|.+.+++
T Consensus       278 ~~gVtl~agpk-l~~~l~~--------~p~e~~s~~~Ey~~l~~~ievV~~v~~Ai~HI~~hgS~HTD~IvTe~~~~Ae~  348 (433)
T KOG4165|consen  278 EEGVTLHAGPK-LAALLKF--------SPPEAKSFNTEYGSLECTIEVVDSVQSAIDHIHTHGSSHTDCIVTENEATAEH  348 (433)
T ss_pred             hcCeEEecChh-HHhhcCc--------CCchhhhhhhhhcchheeeeecccHHHHHHHHHhcCCcccceEEecCHHHHHH
Confidence            34555554432 2111111        14455667888888889999999999999999999999999999999999999


Q ss_pred             HHHhcceeEEEECCcCCCCCCCCccCCCCCCCC----CcchHHHHHhhhhceEEEEe
Q 011130          434 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQG----REKGSYSLSNYLQVKAVVTA  486 (493)
Q Consensus       434 ~~~~l~~g~V~VN~~~~~~~~~pfGG~~~SG~G----~~~g~~~l~~~~~~k~v~~~  486 (493)
                      |.+.+++..||.|..+.|..++-||--.+-|+.    +..|+.|++-.+..||+...
T Consensus       349 Fl~~VDSa~vf~NASTRFaDGfRfGlGaEVGIST~rIHARGPvGveGLlttkw~lRG  405 (433)
T KOG4165|consen  349 FLKHVDSACVFHNASTRFADGFRFGLGAEVGISTSRIHARGPVGVEGLLTTKWLLRG  405 (433)
T ss_pred             HHhccchhheeecccccccccccccccceeeeeccceeccCCccccceeeeeeEEec
Confidence            999999999999999999999989755555653    46699999999889987654


No 134
>cd07080 ALDH_Acyl-CoA-Red_LuxC Acyl-CoA reductase LuxC. Acyl-CoA reductase, LuxC, (EC=1.2.1.50) is the fatty acid reductase enzyme responsible for synthesis of the aldehyde  substrate for the luminescent reaction catalyzed by luciferase. The fatty acid reductase, a luminescence-specific, multienzyme complex (LuxCDE), reduces myristic acid to generate the long chain fatty aldehyde required for the luciferase-catalyzed reaction resulting in the emission of blue-green light. Mutational studies of conserved cysteines of LuxC revealed that the cysteine which aligns with the catalytic cysteine conserved throughout the ALDH superfamily is the LuxC acylation site. This CD is composed of mainly bacterial sequences but also includes a few archaeal sequences similar to the Methanospirillum hungateiacyl acyl-CoA reductase RfbN.
Probab=99.87  E-value=1.6e-19  Score=187.34  Aligned_cols=310  Identities=16%  Similarity=0.114  Sum_probs=200.6

Q ss_pred             CHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHcCCChhhhhhccHHHHHHHHH-
Q 011130          101 EAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLE----RHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFR-  175 (493)
Q Consensus       101 ~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~~l~----~~~~ela~~~~~e~Gk~~~~a~~~Ev~~~~~~l~-  175 (493)
                      +..++++.++..+...+  ....++.++..+++.++++.+.    ..+.+..+.+..-+|.+...... .+......|+ 
T Consensus         3 ~~~~~~~~~~~l~~~~~--~~~~~~~~~iv~~l~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~-a~~~l~~~~~r   79 (422)
T cd07080           3 SAPDLDALIEELRLNRR--ALAALPVEEIVDFLDRAGKRLLDPDYPLRQQAERLLPTVTGYSEEMLRE-GLKRLMALFRR   79 (422)
T ss_pred             CHHHHHHHHHHHHhhHH--hHhcCCHHHHHHHHHHHHHHhcCCCchHHHHHHHhhhhccCCCHHHHHH-HHHHHHHHcCH
Confidence            34455666665555444  5567788888888888887775    34556666667777777544332 3333333332 


Q ss_pred             -HHHHhhHHhcCccCCCC----CCceeEEEeeeeeeE-------------------------------------------
Q 011130          176 -YYAGWADKIQGLTAPAD----GPYHVQTLHEPIGVA-------------------------------------------  207 (493)
Q Consensus       176 -~~a~~~~~~~~~~~~~~----~~~~~~~~~~PlGVv-------------------------------------------  207 (493)
                       .+.....+..+.....+    .+...++.++|+|||                                           
T Consensus        80 ~~l~~~l~~el~~~~~Ld~w~~~~~~~~~~~~P~Gvv~~I~p~N~P~l~~~s~~~aLlaGN~~ilKpS~~~p~~~~~l~~  159 (422)
T cd07080          80 ENLERILERELGSPGILDEWVPPGRGGYIRAQPRGLVVHIIAGNVPLLPVWSIVRGLLVKNVNLLKMSSSDPLTATALLR  159 (422)
T ss_pred             HHHHHHHHHhcCCcccccCCccCCCCCeeEEcCCceEEEEccCCccccHHHHHHHHHHhcCceEEECCCccchHHHHHHH
Confidence             11111111111000001    133557888999998                                           


Q ss_pred             ------------eEEEee--eCCccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCC-CceEEccC
Q 011130          208 ------------GVLNIV--SGYGPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGK-SPFIVCED  272 (493)
Q Consensus       208 ------------gvv~vv--~~~~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~-~p~iV~~d  272 (493)
                                  +.++++  +|.+.++++.|..++  |.|+||||+++++.|++.++. +  +.++|+||| +++|+.++
T Consensus       160 ~l~~~~p~~~~~~~~~vv~~~g~~~~~~~~l~~~~--D~i~~~Gs~~~~~~i~~~a~~-~--~~~Le~Ggk~s~~vi~~~  234 (422)
T cd07080         160 SLADVDPNHPLTDSISVVYWPGGDAELEERILASA--DAVVAWGGEEAVKAIRSLLPP-G--CRLIDFGPKYSFAVIDRE  234 (422)
T ss_pred             HHHhcCCCCcccceEEEEEecCCchHHHHHHHHhC--CEEEEeCCHHHHHHHHHhCCC-C--CeeeecCCceeEEEecHH
Confidence                        345676  454555788898887  999999999999999998875 4  569999999 55555666


Q ss_pred             C----CHHHHHHHHHHHHHhhcCCcccCCCeeEecchh---HHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHH
Q 011130          273 A----DVDKAAELAHYALFFNQGQCCCAGSRTFVHESV---YDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKI  345 (493)
Q Consensus       273 a----Dl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i---~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~  345 (493)
                      +    |++.+++.++.+.|.++||.|+|+++||||+++   +++|.++|.++++++.-..|.      +++ +.....++
T Consensus       235 a~~~~dl~~aa~~~a~~~~~~~gQ~C~sp~~v~V~~~~~~~~~~f~~~l~~~l~~~~~~~p~------~~~-~~~~~~~~  307 (422)
T cd07080         235 ALESEKLAEVADALAEDICRYDQQACSSPQVVFVEKDDDEELREFAEALAAALERLPRRYPA------LSL-SAAESAKI  307 (422)
T ss_pred             hhccccHHHHHHHHHHHHHHHhhhhccCCeEEEEECCCCchHHHHHHHHHHHHHHHHHhCCC------CCC-CHHHHHHH
Confidence            8    999999999999999999999999999999999   999999999999887543332      111 33333333


Q ss_pred             HHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEec
Q 011130          346 LKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFT  425 (493)
Q Consensus       346 ~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t  425 (493)
                      ...=..+...+.+...    ..+.+    -+|+......  + ..-..+=.+.|+++++++|++..++.  |=-|+++|.
T Consensus       308 ~~~r~~~~~~~~~~~~----~~~~~----~~v~~~~~~~--~-~~~~~~r~v~v~~v~~l~~~l~~~~~--~lQTvg~~~  374 (422)
T cd07080         308 ARARLEAEFYELKGGV----SRDLG----WTVIISDEIG--L-EASPLNRTVNVKPVASLDDVLRPVTP--YLQTVGLAP  374 (422)
T ss_pred             HHHHHHHHHHHHhcCC----CCCCC----eEEEEeCCCC--c-cCCCCcCEEEEEEcchHHHHHHhhhh--hcceeEeec
Confidence            3322222112211111    11122    2333322211  1 11456677889999999999999986  556999999


Q ss_pred             CCHHHHHHHHHhcc
Q 011130          426 HNLDTANTLMRALR  439 (493)
Q Consensus       426 ~d~~~~~~~~~~l~  439 (493)
                      .+.+. .++++.+.
T Consensus       375 ~~~~~-~~~~~~l~  387 (422)
T cd07080         375 SPAEL-AELADALA  387 (422)
T ss_pred             ChhhH-HHHHHHHH
Confidence            88876 67777774


No 135
>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism]
Probab=99.48  E-value=7e-14  Score=116.66  Aligned_cols=145  Identities=27%  Similarity=0.284  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHHHHHHH-hCCCEEEeCCcccCCCCceeeceEEecCCCCc
Q 011130          307 YDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKYIRSGV-DGGAKLETGGERLGAKGYYIKPTVFTGVKDDM  385 (493)
Q Consensus       307 ~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~-~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~  385 (493)
                      ...+.+.|++..+.+++-+-..++++.     .+..+++.++|+.-. -.|-.+..-|.   ..|+|+.||+|. +.|+|
T Consensus         8 aksW~~~lve~ak~l~v~~g~kp~tD~-----~a~~~ri~~liqS~~~~~~r~~yl~~y---a~~~f~~~tiLs-vtP~m   78 (157)
T KOG2449|consen    8 AKSWHPTLVEDAKVLKVNAGEKPQTDK-----YAPKVRIDKLIQSEDPLDGRFIYLPGY---AEGNFVGPTILS-VTPNM   78 (157)
T ss_pred             hhhhhHHHHHhhhheEeccCCCCCccc-----hhHHHHHHHHhcCcCccCCceEEeecc---ccCCcccceEEE-ecCCc
Confidence            356677788888888888777777776     455566666666410 01222222222   368899999998 99999


Q ss_pred             cccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhcceeEEEECCc-CCCCCCCCccCC
Q 011130          386 LIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRALRVGSVWINCF-DVFDAAIPFGGY  460 (493)
Q Consensus       386 ~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l~~g~V~VN~~-~~~~~~~pfGG~  460 (493)
                      .++.||+||||+....-.+++|+|..+|+++||....|||.+.+.++.++...++|.|.+|.+ |.--+.+-|-|-
T Consensus        79 s~ykeeI~gpVlv~l~~~tldd~I~Iin~nPygn~t~i~Tsn~atark~~~e~~a~qig~~~~ip~ilk~~sfsg~  154 (157)
T KOG2449|consen   79 SCYKEEIFGPVLVRLETETLDDAIFIINNNPYGNGTAIFTSNGATARKFCHEPDAGQIGANVPIPVILKMFSFSGD  154 (157)
T ss_pred             ceeHhhhhcceEEEEeecCCCceeEEEecCCCCceeEEEecCcHHhhhhhcCCCccceeccccccccccceecccc
Confidence            999999999999999999999999999999999999999999999999999999999999975 333344445543


No 136
>PF07368 DUF1487:  Protein of unknown function (DUF1487);  InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=99.32  E-value=5.3e-11  Score=109.14  Aligned_cols=202  Identities=19%  Similarity=0.213  Sum_probs=143.7

Q ss_pred             CceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHH
Q 011130          265 SPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEK  344 (493)
Q Consensus       265 ~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~  344 (493)
                      .-+||++|+|++.|+..++.++-..-|  ..+.-.|+|||++.|+|+++++.+++.+      ++.     +.+...+.+
T Consensus         6 ~lMIvfe~GDlnsA~~~L~~sl~~Pf~--~~~VatVlVqEsireefi~rvr~~m~pl------~~~-----va~Hpny~r   72 (215)
T PF07368_consen    6 QLMIVFEDGDLNSAMHYLLESLHNPFA--PGAVATVLVQESIREEFIERVRSRMKPL------SPQ-----VANHPNYLR   72 (215)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHhCccc--CCcEEEEEEeHHHHHHHHHHHHHhCccC------Chh-----hccCcHHHH
Confidence            348999999999999999999865544  4678899999999999999999988754      222     223345666


Q ss_pred             HHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcC--CCCcEEE
Q 011130          345 ILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNAS--QYGLAAG  422 (493)
Q Consensus       345 ~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~--~~gl~a~  422 (493)
                      ..+.|+   .-+++++.+.....  -..-.|.++.+.+...  +.. -..+|+++..|++..||+++.+.-  +|+ +.+
T Consensus        73 sl~~i~---~l~~~~I~~~~~~~--~~~aSPilV~d~~h~~--fg~-~PTgViTlhtFRt~~Ea~~l~~kE~l~f~-SVs  143 (215)
T PF07368_consen   73 SLKKIK---CLNAKTIVADFENV--PPPASPILVCDFTHSY--FGD-GPTGVITLHTFRTPKEAIELCAKETLPFD-SVS  143 (215)
T ss_pred             HHHHHH---hcCCeEEEecccCC--CCCCCCEEEcCCCHHH--cCC-CCCeEEEEEccCCHHHHHHHHhcCCCCcc-eEE
Confidence            666655   46899998843211  1223599998876542  222 455899999999999999999974  444 999


Q ss_pred             EecCCHHHHHHHHHhcceeEEEECCcCC-CCCCCCccCCCCCCCCCcch--HHHHHhhhhceEEEEeCC
Q 011130          423 VFTHNLDTANTLMRALRVGSVWINCFDV-FDAAIPFGGYKQSGQGREKG--SYSLSNYLQVKAVVTALK  488 (493)
Q Consensus       423 v~t~d~~~~~~~~~~l~~g~V~VN~~~~-~~~~~pfGG~~~SG~G~~~g--~~~l~~~~~~k~v~~~~~  488 (493)
                      ||++-.+.+-+++.+|++..+||||... ..|-.++-..+..-.--..|  .+.+...-+.|.|+.+..
T Consensus       144 iW~ekla~~Yel~~~l~~~~f~iNC~~V~L~PI~~~~~~~~~~v~i~~gyHYE~l~~~~~~k~IVFP~~  212 (215)
T PF07368_consen  144 IWNEKLASAYELAARLPCDTFYINCFNVDLSPIMPFFAARKNDVLIANGYHYETLTIGGKRKIIVFPIG  212 (215)
T ss_pred             EeCcHHHHHHHHHHhCCCCEEEEEeccCCchhhhhhhhcCCceEEEECCeeEEEEEECCeEEEEEEecc
Confidence            9999999999999999999999999754 34555554433221111111  124445556777776653


No 137
>PF05893 LuxC:  Acyl-CoA reductase (LuxC);  InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=99.06  E-value=3.3e-07  Score=94.45  Aligned_cols=232  Identities=17%  Similarity=0.215  Sum_probs=141.6

Q ss_pred             ccchhhhhhccccccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccC
Q 011130          217 GPTAGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCA  296 (493)
Q Consensus       217 ~~~~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a  296 (493)
                      +.++.+.+..  ..|.++.+||.++.+.+.+...  ..++.+....-.+-.+|..+++++.+++.+..-.+....|.|.|
T Consensus       158 d~~~~~~~~~--~~D~vv~wGgd~ti~~ir~~~~--~~~~~i~fg~k~S~avi~~~~~~~~~a~~~a~Di~~~dQ~aCsS  233 (399)
T PF05893_consen  158 DEELEEALSQ--QADAVVAWGGDETIRAIRQPLP--PGARLIEFGPKYSFAVIDAEAELEEAARRLANDIFLFDQQACSS  233 (399)
T ss_pred             chHHHHHHHH--HCCEEEEeCCHHHHHHHHHHcC--CCCcEeeeCCceEEEEEcCchhHHHHHHHHHHHHHHhhCcccCC
Confidence            4455565653  5799999999999999988443  23445555556677888888899999999999999999999999


Q ss_pred             CCeeEecc---hhHHHHHHHHHHHHhhcccCCCCCCCCccccCCCHHHHHHHHHH-----HHHHHhCCCEEEeCCcccCC
Q 011130          297 GSRTFVHE---SVYDQFVEKANALAMKRVVGDPFKGGIQQGPQIDSEQFEKILKY-----IRSGVDGGAKLETGGERLGA  368 (493)
Q Consensus       297 ~~~v~V~~---~i~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~-----i~~a~~~ga~v~~gg~~~~~  368 (493)
                      ++.|||..   .-.++|.++|.+.+.+..---|..       ..+......+...     +..+...+.++..+..    
T Consensus       234 p~~ifv~~g~~~~~~~f~~~L~~~L~~~~~~~p~~-------~~s~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~----  302 (399)
T PF05893_consen  234 PQVIFVETGDGDSVEEFAERLAEALERAAERYPRG-------ELSIDEAAAISSLRAEAELRYALDGEYRVWSSDD----  302 (399)
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHHHHHHHhCCCc-------CCCHHHHHHHHHHHHHHHHHHHhcCCcceeecCC----
Confidence            99999993   335788888877766532111111       1122222222222     2234344444542221    


Q ss_pred             CCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc-ceeEEEECC
Q 011130          369 KGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL-RVGSVWINC  447 (493)
Q Consensus       369 ~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l-~~g~V~VN~  447 (493)
                      .    .-||+....+   ......++=++.|+++++++|++..++....=-|++++... .....+++.+ ..|.--|  
T Consensus       303 ~----~~~V~~~~~~---~~~~~pl~r~v~v~~v~~~~e~~~~l~~~~~lQTvgi~~~~-~~~~~~~~~l~~~Gv~Ri--  372 (399)
T PF05893_consen  303 N----SWTVIVSPEP---PLLPSPLNRTVYVVPVDSLEELVPYLRPKRGLQTVGIYPWS-ERLEELARALAAAGVDRI--  372 (399)
T ss_pred             C----CEEEEECCCc---ccccCCCCCEEEEEEcCCHHHHHHHhhhcCCCeeEEEecCh-hhHHHHHHHHHhcCCeee--
Confidence            1    1344433221   22334456688999999999999999987541388887654 4455666533 4442222  


Q ss_pred             cCCCCCCCCccCCCCCCCC-CcchHHHHHhhhhc
Q 011130          448 FDVFDAAIPFGGYKQSGQG-REKGSYSLSNYLQV  480 (493)
Q Consensus       448 ~~~~~~~~pfGG~~~SG~G-~~~g~~~l~~~~~~  480 (493)
                             .|.|-.-.--.| ..-|.+.|..|+++
T Consensus       373 -------v~~G~m~~~~~g~~hDG~~~L~~lvRw  399 (399)
T PF05893_consen  373 -------VPLGQMLDFDPGWPHDGMYPLRRLVRW  399 (399)
T ss_pred             -------CCCCcCCCCCCCCCcCCHhHHHHHhCC
Confidence                   223222111112 34477888887763


No 138
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=92.46  E-value=7.9  Score=39.79  Aligned_cols=81  Identities=22%  Similarity=0.274  Sum_probs=52.0

Q ss_pred             EEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc-ceeEEEECCcCCCC--CC--CCccCCCCCCCCCcchHH
Q 011130          398 SILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL-RVGSVWINCFDVFD--AA--IPFGGYKQSGQGREKGSY  472 (493)
Q Consensus       398 ~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l-~~g~V~VN~~~~~~--~~--~pfGG~~~SG~G~~~g~~  472 (493)
                      .|+.++|++|+++++|...- -..-|.++|+.   .+..++ ++|.|+++.+....  .+  -|-.=.+.+|.-|..+.-
T Consensus       300 ~iilv~~l~ea~~~~N~~AP-EHLei~~~~p~---~~l~~I~nAGsIFlG~~sPe~~GDY~aG~NHVLPT~g~AR~~s~L  375 (425)
T COG0141         300 AIILVDDLDEAVEISNEYAP-EHLELQTENPR---ELLGKIRNAGSIFLGHYSPESLGDYAAGPNHVLPTSGTARFSSGL  375 (425)
T ss_pred             eEEEECCHHHHHHHHHhhCh-HhhhhhhcCHH---HHHHHhcccceeeecCCCCccccccccCCCccCCCCccchhcCCc
Confidence            56678999999999998532 35678888875   455555 69999999864421  11  011112345555666666


Q ss_pred             HHHhhhhceE
Q 011130          473 SLSNYLQVKA  482 (493)
Q Consensus       473 ~l~~~~~~k~  482 (493)
                      +...|++.-+
T Consensus       376 ~v~dF~K~~t  385 (425)
T COG0141         376 SVYDFLKRST  385 (425)
T ss_pred             cHHHhhhHHH
Confidence            7777766543


No 139
>PF00815 Histidinol_dh:  Histidinol dehydrogenase;  InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=89.33  E-value=29  Score=35.91  Aligned_cols=83  Identities=19%  Similarity=0.282  Sum_probs=47.4

Q ss_pred             EEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc-ceeEEEECCcCCC---C-CCCCccCCCCCCCCCcchHH
Q 011130          398 SILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL-RVGSVWINCFDVF---D-AAIPFGGYKQSGQGREKGSY  472 (493)
Q Consensus       398 ~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l-~~g~V~VN~~~~~---~-~~~pfGG~~~SG~G~~~g~~  472 (493)
                      .++.++|++|+++++|..-- -...|.++|+.   .+..++ .+|.|+++.+...   + ..-|-.=.+.+|..|..|.-
T Consensus       290 ~ii~~~~l~ea~~~~N~~AP-EHLel~~~~~~---~~~~~i~~AGaiFlG~~tp~a~GDY~aGpNHvLPT~G~AR~~sgL  365 (412)
T PF00815_consen  290 AIIVVDSLEEAIELANEYAP-EHLELQVEDPE---ELLEKIRNAGAIFLGEYTPEALGDYAAGPNHVLPTGGTARFSSGL  365 (412)
T ss_dssp             EEEE-SSHHHHHHHHHHH---SEEEEESTTHH---HHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S
T ss_pred             eEEEECCHHHHHHHHHHhhH-HHHHHHHcCHH---HHHHHhhccChhhcCCCCCHHHhhhccCCCccCCCCccccccCCC
Confidence            56778999999999998422 36788898874   556666 6999999976431   1 00011112344566777777


Q ss_pred             HHHhhhhceEEE
Q 011130          473 SLSNYLQVKAVV  484 (493)
Q Consensus       473 ~l~~~~~~k~v~  484 (493)
                      +...|++.-++.
T Consensus       366 sv~~FlK~~s~~  377 (412)
T PF00815_consen  366 SVDDFLKRISVQ  377 (412)
T ss_dssp             -GGGGEEEEEEE
T ss_pred             cHHHccceeeEE
Confidence            888888876653


No 140
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=83.07  E-value=60  Score=33.41  Aligned_cols=83  Identities=22%  Similarity=0.268  Sum_probs=54.7

Q ss_pred             EEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc-ceeEEEECCcCC--CCCCC--CccCCCCCCCCCcchHH
Q 011130          398 SILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL-RVGSVWINCFDV--FDAAI--PFGGYKQSGQGREKGSY  472 (493)
Q Consensus       398 ~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l-~~g~V~VN~~~~--~~~~~--pfGG~~~SG~G~~~g~~  472 (493)
                      .++.++|++|+++++|..-- -..-|.++|..   .+..++ .+|.|++..+..  +..++  |-.=.+.+|.+|..+.-
T Consensus       273 ~ii~v~~l~ea~~~~N~~AP-EHLel~~~~p~---~~l~~I~nAGaiFlG~~tp~a~GDY~aG~NHvLPT~G~Ar~~sgL  348 (393)
T TIGR00069       273 AIILVDDLEEAIEISNDYAP-EHLELQTKNPE---ELLPKIRNAGSIFLGPYTPEAAGDYAAGPNHVLPTGGTARFYSGL  348 (393)
T ss_pred             EEEEECCHHHHHHHHHhhCh-HhheehhCCHH---HHHhhcCccceeccCCCCchhhhhccCCCCcccCCCcceeecCCc
Confidence            35678999999999998532 24567888874   455555 699999987643  11111  11113345667777777


Q ss_pred             HHHhhhhceEEE
Q 011130          473 SLSNYLQVKAVV  484 (493)
Q Consensus       473 ~l~~~~~~k~v~  484 (493)
                      +.+.|++.-++.
T Consensus       349 ~v~~F~K~~s~~  360 (393)
T TIGR00069       349 SVLDFLKRITVQ  360 (393)
T ss_pred             cHHHhccceeEE
Confidence            888888776653


No 141
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=74.69  E-value=1.1e+02  Score=31.60  Aligned_cols=82  Identities=20%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             EEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc-ceeEEEECCcCCC--CCC--CCccCCCCCCCCCcchHH
Q 011130          398 SILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL-RVGSVWINCFDVF--DAA--IPFGGYKQSGQGREKGSY  472 (493)
Q Consensus       398 ~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l-~~g~V~VN~~~~~--~~~--~pfGG~~~SG~G~~~g~~  472 (493)
                      .++.++|++|+++++|..-- -..-|.++|...   +..++ .+|.|++..+...  ..+  -|-.=.+.+|..|..|.-
T Consensus       277 ~ii~~~~~~eai~~~N~~AP-EHLel~~~~~~~---~l~~i~nAGsiFlG~~tp~a~GDY~aGpNHvLPT~G~Ar~~sgL  352 (390)
T cd06572         277 AIILVDDLEEAIELANEYAP-EHLELQTEDPEE---LLEKIRNAGSIFLGPYTPEALGDYAAGPNHVLPTGGTARFYSGL  352 (390)
T ss_pred             EEEEECCHHHHHHHHHhhch-hhheeHhcCHHH---HHhhCccceEEeecCCCchhhhccccCCCCccCCCcceeecCCC
Confidence            56678999999999998532 355788888753   55555 6999999986431  111  111112345566766677


Q ss_pred             HHHhhhhceEE
Q 011130          473 SLSNYLQVKAV  483 (493)
Q Consensus       473 ~l~~~~~~k~v  483 (493)
                      +.+.|++.-++
T Consensus       353 ~v~~F~K~~s~  363 (390)
T cd06572         353 SVDDFLKRITV  363 (390)
T ss_pred             CHHHheeccee
Confidence            88888777654


No 142
>PF07045 DUF1330:  Protein of unknown function (DUF1330);  InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=74.52  E-value=8.1  Score=28.71  Aligned_cols=45  Identities=20%  Similarity=0.369  Sum_probs=31.2

Q ss_pred             hCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcCCC
Q 011130          354 DGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNASQY  417 (493)
Q Consensus       354 ~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~~~  417 (493)
                      +.|++++..|..         |.++.+.. +         ...+.|+.|+|.+.+.++.|+..|
T Consensus        17 ~~GG~~l~~~~~---------~~~leG~~-~---------~~~~viieFPs~~aa~~~~~speY   61 (65)
T PF07045_consen   17 KYGGRVLARGGE---------PEVLEGDW-D---------PDRVVIIEFPSMEAAKAWYNSPEY   61 (65)
T ss_dssp             HTT-EEEEECEE---------EEEEEST--S---------SSEEEEEEESSHHHHHHHHCSHHH
T ss_pred             HcCCEEEEECCc---------eeEEecCC-C---------CCeEEEEECCCHHHHHHHHCCHhH
Confidence            468888876542         66676611 1         146799999999999999887544


No 143
>KOG2450 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=73.27  E-value=0.62  Score=48.51  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceE---EEEEeCCHHHHHHHHH
Q 011130          337 IDSEQFEKILKYIRSGVDGGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQ---SILKYKDLDEVIQRSN  413 (493)
Q Consensus       337 i~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl---~v~~~~~~~eai~~~n  413 (493)
                      .+..++.+++..+.++++++..++...+.. +.|-.+.++...+++.....++  .|.+..   .........+.+...+
T Consensus        79 ~~~~~R~~~L~~~Adlie~~~~~lA~~E~~-d~GKp~~~a~~~Dl~~~~~~~r--y~ag~ad~~~~~~~~~~~~~~~yt~  155 (501)
T KOG2450|consen   79 RDAAERGRLLRKLADLIEQDADVLAALEVL-DNGKPYPEALVSDLPPAIDCFR--YYAGWADKIHGSTIPTDGEFFAYTR  155 (501)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHhhhccc-ccCCcchhhhhcCchhhhhHHH--hhccchhhcccccCCCCCceEEEec
Confidence            366788899999999999888888776643 3566777887677766555444  333322   2333444566677777


Q ss_pred             cCCCCcEEEEecCC---HHHHHHHHHhcceeEEEECCcCC
Q 011130          414 ASQYGLAAGVFTHN---LDTANTLMRALRVGSVWINCFDV  450 (493)
Q Consensus       414 ~~~~gl~a~v~t~d---~~~~~~~~~~l~~g~V~VN~~~~  450 (493)
                      ..+.|-...|--=|   .-.+.+++-+|-+|+++||-+..
T Consensus       156 ~eP~GV~G~I~pWN~Pllm~awKlaPALa~GNtvV~Kpae  195 (501)
T KOG2450|consen  156 REPIGVCGQIIPWNFPLLMQAWKLAPALAAGNTVVLKPAE  195 (501)
T ss_pred             CCcceeeeEeccCchHHHHHHHhhhhHHhhCcEEEecCCC
Confidence            88888544444444   35577888899999999998654


No 144
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=69.62  E-value=1.5e+02  Score=30.98  Aligned_cols=83  Identities=14%  Similarity=0.236  Sum_probs=55.1

Q ss_pred             EEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc-ceeEEEECCcCC--CCCC--CCccCCCCCCCCCcchHH
Q 011130          398 SILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL-RVGSVWINCFDV--FDAA--IPFGGYKQSGQGREKGSY  472 (493)
Q Consensus       398 ~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l-~~g~V~VN~~~~--~~~~--~pfGG~~~SG~G~~~g~~  472 (493)
                      .|+.++|++|+++++|..-- -..-|.++|..   .+..++ .+|.|++..+..  +..+  -|-.=.+.+|..|..|.-
T Consensus       299 ~ii~v~~l~ea~~~~N~~AP-EHLel~~~~~~---~~l~~i~nAGaiFlG~~sp~a~GDY~aGpNHvLPT~G~Ar~~sgL  374 (426)
T PRK12447        299 EVILCDDLEEMVAEADRYAS-EHVQVMTEDPD---WFLENMTNYGALFLGERTNVAYGDKVIGTNHVLPTSGAARYTGGL  374 (426)
T ss_pred             EEEEECCHHHHHHHHHhhCh-HheeehhCCHH---HHHhhcCccceeccCCCCchhhhhcccCCCcccCCCcceeecCCC
Confidence            35678999999999998532 24568888874   555666 699999987543  1111  111123455677777777


Q ss_pred             HHHhhhhceEEE
Q 011130          473 SLSNYLQVKAVV  484 (493)
Q Consensus       473 ~l~~~~~~k~v~  484 (493)
                      +.+.|.+.-++.
T Consensus       375 sv~~FlK~~s~~  386 (426)
T PRK12447        375 WVGKFLKTVTYQ  386 (426)
T ss_pred             cHHHhccceeEE
Confidence            888888776543


No 145
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=68.97  E-value=1.5e+02  Score=30.89  Aligned_cols=83  Identities=22%  Similarity=0.314  Sum_probs=55.9

Q ss_pred             EEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc-ceeEEEECCcCC--CCCC--CCccCCCCCCCCCcchHH
Q 011130          398 SILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL-RVGSVWINCFDV--FDAA--IPFGGYKQSGQGREKGSY  472 (493)
Q Consensus       398 ~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l-~~g~V~VN~~~~--~~~~--~pfGG~~~SG~G~~~g~~  472 (493)
                      .|+.++|+||+++++|..-- -...|.++|+.   .+..++ .+|.|++..+..  +..+  -|-.=.+.+|..|..|.-
T Consensus       304 ~iivv~~leeai~~~N~~AP-EHLel~~~~p~---~~l~~I~nAGaiFlG~~tp~a~GDY~aGpNHvLPT~G~AR~~sgL  379 (425)
T PRK00877        304 AIILVDDLEEAIELSNAYAP-EHLEIQTEDPR---ALLDRIRNAGAIFLGPYTPESLGDYAAGPNHVLPTSGTARFSSGL  379 (425)
T ss_pred             EEEEECCHHHHHHHHHhhCh-HheeehhCCHH---HHHhhcCccceeccCCCCchhhhhcccCCCcccCCCcceeecCCc
Confidence            45678999999999998532 34568888875   455555 699999987643  1111  111123456777888888


Q ss_pred             HHHhhhhceEEE
Q 011130          473 SLSNYLQVKAVV  484 (493)
Q Consensus       473 ~l~~~~~~k~v~  484 (493)
                      +.+.|++.-++.
T Consensus       380 sV~~F~K~~s~~  391 (425)
T PRK00877        380 SVYDFLKRSSVI  391 (425)
T ss_pred             cHHHhccceeEE
Confidence            888898876653


No 146
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=65.12  E-value=26  Score=28.18  Aligned_cols=63  Identities=14%  Similarity=0.285  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHHHHHHh-CCCEEEeCCcccCCCCceeeceEEecCCCCccccccccccceEEEEEeCCHHHHHHHHHcC
Q 011130          337 IDSEQFEKILKYIRSGVD-GGAKLETGGERLGAKGYYIKPTVFTGVKDDMLIAKDEIFGPVQSILKYKDLDEVIQRSNAS  415 (493)
Q Consensus       337 i~~~~~~~~~~~i~~a~~-~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~i~~~E~fgPvl~v~~~~~~~eai~~~n~~  415 (493)
                      .+.++++.....+..+++ .|++.|..|..         +..+++.          -+---+.|+.|+|.+.|.+.-|+.
T Consensus        13 ~D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~---------v~~lEG~----------w~ptr~vviEFps~~~ar~~y~Sp   73 (96)
T COG5470          13 RDPEQYKDYVSKAKPAIEKFGGRYLVRGGE---------VETLEGE----------WRPTRNVVIEFPSLEAARDCYNSP   73 (96)
T ss_pred             cCHHHHHHHHHHhHHHHHHhCCeeEeeCCC---------eeeccCC----------CCcccEEEEEcCCHHHHHHHhcCH
Confidence            345566666666666655 48888875542         2222221          010125788999999999998887


Q ss_pred             CCC
Q 011130          416 QYG  418 (493)
Q Consensus       416 ~~g  418 (493)
                      +|.
T Consensus        74 eYq   76 (96)
T COG5470          74 EYQ   76 (96)
T ss_pred             HHH
Confidence            663


No 147
>PRK13770 histidinol dehydrogenase; Provisional
Probab=63.31  E-value=1.9e+02  Score=30.03  Aligned_cols=83  Identities=17%  Similarity=0.231  Sum_probs=54.6

Q ss_pred             EEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc-ceeEEEECCcCC--CCCC--CCccCCCCCCCCCcchHH
Q 011130          398 SILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL-RVGSVWINCFDV--FDAA--IPFGGYKQSGQGREKGSY  472 (493)
Q Consensus       398 ~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l-~~g~V~VN~~~~--~~~~--~pfGG~~~SG~G~~~g~~  472 (493)
                      .++.++|+||+++++|..-. -..-|.++|..   .+..++ .+|.|++..+..  +..+  -|-.=.+.+|..|..|.-
T Consensus       294 ~ii~v~~~eeai~~~N~~AP-EHLel~~~~~~---~~l~~i~nAGaiFlG~~sp~a~GDY~aGpNHvLPT~G~AR~~sgL  369 (416)
T PRK13770        294 YLIHASNFDEACHVMNTIAP-EHASIQTVNPQ---PYIEKVKYVGALFIGHYSPEVIGDYVAGPSHVLPTNRTARFTNGL  369 (416)
T ss_pred             EEEEECCHHHHHHHHHhhCh-HhheehhCCHH---HHHhhCCEeceeccCCCCchhhhccccCCCCcCCCCcceeccCCC
Confidence            45678999999999998532 24568888874   556666 599999987643  1111  111113345666777777


Q ss_pred             HHHhhhhceEEE
Q 011130          473 SLSNYLQVKAVV  484 (493)
Q Consensus       473 ~l~~~~~~k~v~  484 (493)
                      +.+.|++.-++.
T Consensus       370 sv~~FlK~~s~~  381 (416)
T PRK13770        370 SVNDFLTRNTVI  381 (416)
T ss_pred             cHHHeecceeeE
Confidence            888888776553


No 148
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=59.40  E-value=19  Score=42.94  Aligned_cols=43  Identities=12%  Similarity=-0.001  Sum_probs=32.2

Q ss_pred             hhhhhhccccccEEEEecCcHHHHHHHHHHhhcCC--CceeEecC
Q 011130          220 AGAALASHMEVDKLAFTGSTTTGKIVLQLAAKSNL--KPVTLELG  262 (493)
Q Consensus       220 ~~~~L~~~~~v~~v~fTGs~~~g~~v~~~a~~~~~--~pv~lelg  262 (493)
                      +++.+..+++++.|.|||++++.+.|.+..+++.+  .|++.|..
T Consensus      1131 ~~~~~~~~~~i~~V~~~G~~~~a~~i~~~LA~R~G~Ivpliaet~ 1175 (1208)
T PRK11905       1131 WTQDWEADDPFAGALLEGDAERARAVRQALAARPGAIVPLIAAEP 1175 (1208)
T ss_pred             cccccccCCcccEEEEeCCHHHHHHHHHHHHhCCCCcceEEecCC
Confidence            44566777789999999999999999988777443  44555543


No 149
>PRK13769 histidinol dehydrogenase; Provisional
Probab=56.89  E-value=16  Score=37.06  Aligned_cols=80  Identities=14%  Similarity=0.146  Sum_probs=48.6

Q ss_pred             EEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc-ceeEEEECCcCCCCCCC--CccCCCCCCCCCcchHHHH
Q 011130          398 SILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL-RVGSVWINCFDVFDAAI--PFGGYKQSGQGREKGSYSL  474 (493)
Q Consensus       398 ~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l-~~g~V~VN~~~~~~~~~--pfGG~~~SG~G~~~g~~~l  474 (493)
                      .|+.++|++|+++++|..-- -...|.+.+     .+..++ .+|.|+++.+..+..+.  |-.=.+.+|.+|..|.-+.
T Consensus       257 ~iivv~~leeai~~~N~~AP-EHLel~~~~-----~~~~~i~nAGsiFl~~p~a~GDY~aGpNHvLPT~G~AR~~sgLsv  330 (368)
T PRK13769        257 EVRKVAGVEEAVRFIDEIAP-EHLEVWGRR-----EVAYRVRNVGAVSVNMPSPYLDYVAGISHVLPTGGTARWRGIITP  330 (368)
T ss_pred             eEEEECCHHHHHHHHHhhCh-HheEeeCcH-----HHHhhCCccCChhcCCchhhhccccCCCCcCCCCcceeccCCCcH
Confidence            46788999999999998532 123344422     244455 69999996543322111  1111234566677777788


Q ss_pred             HhhhhceEE
Q 011130          475 SNYLQVKAV  483 (493)
Q Consensus       475 ~~~~~~k~v  483 (493)
                      ..|++.-++
T Consensus       331 ~~FlK~~t~  339 (368)
T PRK13769        331 LTFMKPIGV  339 (368)
T ss_pred             HHcccceeE
Confidence            888776554


No 150
>PF12340 DUF3638:  Protein of unknown function (DUF3638);  InterPro: IPR022099  This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG. 
Probab=55.12  E-value=59  Score=30.92  Aligned_cols=86  Identities=20%  Similarity=0.268  Sum_probs=58.9

Q ss_pred             eeEecC-CCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHHHhhcccC-----CCCCCC
Q 011130          257 VTLELG-GKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANALAMKRVVG-----DPFKGG  330 (493)
Q Consensus       257 v~lelg-G~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~~~~~~vg-----~p~~~~  330 (493)
                      ..+.+| ||+.+|+.           ++.....+..+    .-+++|++..+++-.+.|.+++..+ ++     =|++-+
T Consensus        46 ~QlnMGeGKTsVI~P-----------mla~~LAdg~~----LvrviVpk~Ll~q~~~~L~~~lg~l-~~r~i~~lpFsR~  109 (229)
T PF12340_consen   46 MQLNMGEGKTSVIVP-----------MLALALADGSR----LVRVIVPKALLEQMRQMLRSRLGGL-LNRRIYHLPFSRS  109 (229)
T ss_pred             eeecccCCccchHHH-----------HHHHHHcCCCc----EEEEEcCHHHHHHHHHHHHHHHHHH-hCCeeEEecccCC
Confidence            345555 88877643           23333344433    5589999999999888888888764 23     366655


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHhCCCEEEeC
Q 011130          331 IQQGPQIDSEQFEKILKYIRSGVDGGAKLETG  362 (493)
Q Consensus       331 ~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~g  362 (493)
                      +.    ++....+.+.+.++++.+.|+.+++-
T Consensus       110 ~~----~~~~~~~~~~~l~~~~~~~~gill~~  137 (229)
T PF12340_consen  110 TP----LTPETLEKIRQLLEECMRSGGILLAT  137 (229)
T ss_pred             CC----CCHHHHHHHHHHHHHHHHcCCEEEeC
Confidence            54    45677888889999988888777654


No 151
>PLN02926 histidinol dehydrogenase
Probab=51.11  E-value=3.1e+02  Score=28.68  Aligned_cols=83  Identities=20%  Similarity=0.194  Sum_probs=54.9

Q ss_pred             EEEEEeCCHHHHHHHHHcCCCCcEEEEecCCHHHHHHHHHhc-ceeEEEECCcCC--CCCC--CCccCCCCCCCCCcchH
Q 011130          397 QSILKYKDLDEVIQRSNASQYGLAAGVFTHNLDTANTLMRAL-RVGSVWINCFDV--FDAA--IPFGGYKQSGQGREKGS  471 (493)
Q Consensus       397 l~v~~~~~~~eai~~~n~~~~gl~a~v~t~d~~~~~~~~~~l-~~g~V~VN~~~~--~~~~--~pfGG~~~SG~G~~~g~  471 (493)
                      -.|+.++|++|+++++|..-- -...|.++|..   .+..++ .+|.|++..+..  +..+  -|-.=.+.+|.+|..|.
T Consensus       306 g~iivv~~l~ea~~~~N~~AP-EHLei~~~~~~---~~l~~i~nAGaiFlG~~sp~a~GDY~aGpNHvLPT~G~AR~~sg  381 (431)
T PLN02926        306 SFIVVARDMAEAISFSNLYAP-EHLIVNVEDAE---SWLDKIDNAGSVFLGRWTPESVGDYASGTNHVLPTYGYARMYGG  381 (431)
T ss_pred             CEEEEECCHHHHHHHHHhhCh-HhheehhcCHH---HHHhhcCccceeccCCCCchhhhccccCcCcccCCCcceeecCC
Confidence            356788999999999998532 24568888874   455555 699999986543  1111  01111234566777777


Q ss_pred             HHHHhhhhceEE
Q 011130          472 YSLSNYLQVKAV  483 (493)
Q Consensus       472 ~~l~~~~~~k~v  483 (493)
                      -+...|++.-++
T Consensus       382 Lsv~~FlK~~s~  393 (431)
T PLN02926        382 VSLDSFLKYMTV  393 (431)
T ss_pred             CcHHHhcceeeE
Confidence            788888886554


No 152
>PF06945 DUF1289:  Protein of unknown function (DUF1289);  InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=40.23  E-value=23  Score=25.01  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHH
Q 011130          120 PWPRMTAYERSKIILRFADLL  140 (493)
Q Consensus       120 ~w~~~~~~~R~~iL~~la~~l  140 (493)
                      .|..++..+|.++|.++...+
T Consensus        29 ~W~~~s~~er~~i~~~l~~R~   49 (51)
T PF06945_consen   29 DWKSMSDDERRAILARLRARR   49 (51)
T ss_pred             HHhhCCHHHHHHHHHHHHHHh
Confidence            599999999999999987654


No 153
>PF07287 DUF1446:  Protein of unknown function (DUF1446);  InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=34.40  E-value=83  Score=32.15  Aligned_cols=104  Identities=16%  Similarity=0.092  Sum_probs=54.9

Q ss_pred             HHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchhHHHHHHHHHHH---Hhhc
Q 011130          245 VLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESVYDQFVEKANAL---AMKR  321 (493)
Q Consensus       245 v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i~d~f~~~l~~~---~~~~  321 (493)
                      ++..+.+ +.+|++...||-||.-          +..++.......|.   ..+.-+|+.+...+.+..+.+.   +..+
T Consensus        63 ~L~~~~~-~gIkvI~NaGg~np~~----------~a~~v~eia~e~Gl---~lkvA~V~gDd~~~~v~~~~~~g~~~~~l  128 (362)
T PF07287_consen   63 LLPAAAE-KGIKVITNAGGLNPAG----------CADIVREIARELGL---SLKVAVVYGDDLKDEVKELLAEGETIRPL  128 (362)
T ss_pred             HHHHHHh-CCCCEEEeCCCCCHHH----------HHHHHHHHHHhcCC---CeeEEEEECccchHhHHHHHhCCCCCccC
Confidence            3445555 6789999999988743          33344444455663   3777777766544444333331   2333


Q ss_pred             ccCCCCCCCCccccCCCHHHHHHHHHHHHHHHhCCCEEEeCCcc
Q 011130          322 VVGDPFKGGIQQGPQIDSEQFEKILKYIRSGVDGGAKLETGGER  365 (493)
Q Consensus       322 ~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~  365 (493)
                      ..|.|+.....-  .++...+-- ..-|.+|++.||.|+..|..
T Consensus       129 ~~~~~l~~~~~~--~~~a~aylG-a~pI~~AL~~GADIVI~GR~  169 (362)
T PF07287_consen  129 DTGPPLSEWDDR--IVSANAYLG-AEPIVEALEAGADIVITGRV  169 (362)
T ss_pred             CCCCCcchhccc--cceEEEecC-hHHHHHHHHcCCCEEEeCcc
Confidence            334333221000  111111111 12345677889999988864


No 154
>PF03295 Pox_TAA1:  Poxvirus trans-activator protein A1 C-terminal;  InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=32.59  E-value=50  Score=24.10  Aligned_cols=40  Identities=23%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             cccccccceEEEEEeCCHHHHHHHHHcCC--CC-cEEEEecCC
Q 011130          388 AKDEIFGPVQSILKYKDLDEVIQRSNASQ--YG-LAAGVFTHN  427 (493)
Q Consensus       388 ~~~E~fgPvl~v~~~~~~~eai~~~n~~~--~g-l~a~v~t~d  427 (493)
                      ++||+=--+++++-|++.|++++++|...  -| .+.+.|-+|
T Consensus         9 LREEPKisLLPLv~Y~~Pe~Vi~iIN~lR~keGvYG~c~~~e~   51 (63)
T PF03295_consen    9 LREEPKISLLPLVFYEDPEEVINIINELRNKEGVYGSCYYKEN   51 (63)
T ss_pred             eccCCcceEEeeeeccCHHHHHHHHHHhhhccCceeEEEEecC
Confidence            56777667889999999999999999853  23 344455444


No 155
>COG2237 Predicted membrane protein [Function unknown]
Probab=27.57  E-value=61  Score=32.75  Aligned_cols=97  Identities=18%  Similarity=0.158  Sum_probs=55.2

Q ss_pred             cccEEEEecCcHHHHHHHHHHhhcCCCceeEecCCCCceEEccCCCHHHHHHHHHHHHHhhcCCcccCCCeeEecchh-H
Q 011130          229 EVDKLAFTGSTTTGKIVLQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAAELAHYALFFNQGQCCCAGSRTFVHESV-Y  307 (493)
Q Consensus       229 ~v~~v~fTGs~~~g~~v~~~a~~~~~~pv~lelgG~~p~iV~~daDl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~i-~  307 (493)
                      ++....+||+..+|-.--...++ .+..+..++.-....+|.+.++=|.++..| .|+     -.-.+.+||+|-++- .
T Consensus        66 DveIA~vsG~~~vgv~sd~~l~~-qld~vl~~~~pd~av~VsDGaeDe~ivPiI-~Sr-----~~I~svkrVVVrQs~~i  138 (364)
T COG2237          66 DVEIAVVSGDKDVGVESDLKLSE-QLDEVLSELDPDDAVVVSDGAEDERIVPII-QSR-----VKIDSVKRVVVRQSRGI  138 (364)
T ss_pred             ceEEEEEecCCCcchhhHHHHHH-HHHHHHHcCCCcEEEEeccCcccchhhhhh-hcc-----cceeEEEEEEEecCCCh
Confidence            55555666666655443333333 334456666666678888888877777744 443     345789999995543 2


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCcccc
Q 011130          308 DQFVEKANALAMKRVVGDPFKGGIQQGP  335 (493)
Q Consensus       308 d~f~~~l~~~~~~~~vg~p~~~~~~~gp  335 (493)
                      |.---.+++.+++   -||.-..+.+||
T Consensus       139 EStYyli~~~l~k---tDpe~~~~vL~p  163 (364)
T COG2237         139 ESTYYLIKRYLKK---TDPEYSRTVLGP  163 (364)
T ss_pred             hHHHHHHHHHHhh---cChhhheeeech
Confidence            4333334444443   345445555665


No 156
>COG3795 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.32  E-value=3.9e+02  Score=22.72  Aligned_cols=29  Identities=17%  Similarity=0.318  Sum_probs=22.8

Q ss_pred             cccccccceEEEEEeCCHHHHHHHHHcCCC
Q 011130          388 AKDEIFGPVQSILKYKDLDEVIQRSNASQY  417 (493)
Q Consensus       388 ~~~E~fgPvl~v~~~~~~~eai~~~n~~~~  417 (493)
                      -..|.++- +.++.++|+||||+++...+.
T Consensus        73 EtKEql~G-f~vie~~dLdeA~e~A~~~P~  101 (123)
T COG3795          73 ETKEQLAG-FYVIEVRDLDEALEWAARCPL  101 (123)
T ss_pred             hHHHHhCc-EEEEEeCCHHHHHHHHhcCCC
Confidence            35677766 467788999999999998774


No 157
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=26.69  E-value=83  Score=22.73  Aligned_cols=28  Identities=21%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 011130          120 PWPRMTAYERSKIILRFADLLERHNDEI  147 (493)
Q Consensus       120 ~w~~~~~~~R~~iL~~la~~l~~~~~el  147 (493)
                      .|+.||.++|..+..+......++..++
T Consensus        38 ~W~~ls~~eK~~y~~~a~~~~~~y~~e~   65 (66)
T cd01390          38 KWKELSEEEKKKYEEKAEKDKERYEKEM   65 (66)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            6999999999999888887777766553


No 158
>PF13376 OmdA:  Bacteriocin-protection, YdeI or OmpD-Associated
Probab=22.56  E-value=55  Score=24.06  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHH
Q 011130          102 AEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFAD  138 (493)
Q Consensus       102 ~~~v~~av~~A~~A~~~~~w~~~~~~~R~~iL~~la~  138 (493)
                      ++|+..+++.-..|..  -|..++...|..++..+..
T Consensus         7 P~dl~~aL~~~p~a~~--~f~~l~~~~rr~~i~wi~~   41 (63)
T PF13376_consen    7 PEDLEAALEANPEAKE--FFESLTPSYRREYIRWINS   41 (63)
T ss_pred             CHHHHHHHHCCHHHHH--HHHHCCHHHHHHHHHHHHH
Confidence            4688999998778877  7889999999999887754


No 159
>PF11181 YflT:  Heat induced stress protein YflT
Probab=22.50  E-value=2.1e+02  Score=23.25  Aligned_cols=47  Identities=17%  Similarity=0.173  Sum_probs=35.4

Q ss_pred             EEEeCCHHHHHHHHHc---CCCC-cEEEEecCCHHHHHHHHHhcceeEEEE
Q 011130          399 ILKYKDLDEVIQRSNA---SQYG-LAAGVFTHNLDTANTLMRALRVGSVWI  445 (493)
Q Consensus       399 v~~~~~~~eai~~~n~---~~~g-l~a~v~t~d~~~~~~~~~~l~~g~V~V  445 (493)
                      |-.|++.+|+++.++.   .+|. --.+|+++|.+....+....++-.+-.
T Consensus         3 Igv~~~~~E~~~~I~~L~~~Gy~~ddI~Vva~d~~~~~~l~~~t~~~~~~~   53 (103)
T PF11181_consen    3 IGVYDNEEEALSAIEELKAQGYSEDDIYVVAKDKDRTERLADQTDTNTVGA   53 (103)
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCcccEEEEEcCchHHHHHHHhcCCceecc
Confidence            3467888888777765   5665 477999999999999999886555444


No 160
>cd07049 BMC_EutL_repeat1 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 1 (the first BMC domain of EutL).
Probab=21.27  E-value=1.9e+02  Score=23.75  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=27.6

Q ss_pred             ecCCCCCeEEEEecCCHHHHHHHHHHHHHHcc
Q 011130           86 LDPRTGDVITHVAEGEAEDVNRAVSAARKAFD  117 (493)
Q Consensus        86 ~~P~tg~~i~~v~~~~~~~v~~av~~A~~A~~  117 (493)
                      ..|.+|+++.-+.-.+..|++.+++.+.+.++
T Consensus        67 ~~~~sG~vi~ii~G~dvsdV~sal~~~l~~l~   98 (103)
T cd07049          67 STPLAGEVIGILAGPSPAEVRSGLNAAIDFIE   98 (103)
T ss_pred             ccCCCccEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            35679999988887799999999999988766


No 161
>smart00398 HMG high mobility group.
Probab=20.89  E-value=1.5e+02  Score=21.43  Aligned_cols=29  Identities=17%  Similarity=0.268  Sum_probs=23.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhHHHHH
Q 011130          120 PWPRMTAYERSKIILRFADLLERHNDEIA  148 (493)
Q Consensus       120 ~w~~~~~~~R~~iL~~la~~l~~~~~ela  148 (493)
                      .|+.++.++|..+.........++..++.
T Consensus        39 ~W~~l~~~ek~~y~~~a~~~~~~y~~~~~   67 (70)
T smart00398       39 RWKLLSEEEKAPYEEKAKKDKERYEEEMP   67 (70)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999998888887777766553


Done!