BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011131
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 194/322 (60%), Gaps = 10/322 (3%)
Query: 26 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVL 85
+GV G +N+P S++V++ ++N I +RLYD + L+AL S I+V++ V +V
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 86 GIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVAS 145
+ + SAA WI +NV AY P+ + IAVG++++ + A ++ AM N++ AL ++
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPG-SDLAQYILPAMRNIYNALSSA 119
Query: 146 DLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPYYGY 205
L Q+K+ST ++ +PPS F+SA + + I+QFL + + ++N YPY+ Y
Sbjct: 120 GLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSY 179
Query: 206 TNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEGLNFSGIPVIVT 265
T G + YALF + +V + F Y ++FDA+VDA + ++E + + + V+V+
Sbjct: 180 TGNPGQISLPYALF----TASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVS 235
Query: 266 ESGWPWLGGGNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFNEDKRPG 325
ESGWP GGG E A+ NA+TYN N+IR V G P +P I Y++E+FNE+++ G
Sbjct: 236 ESGWPSAGGGAE--ASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAG 291
Query: 326 PISEKNWGVFFTNGTSVYPLNF 347
I E+N+G+F+ N VY ++F
Sbjct: 292 GI-EQNFGLFYPNKQPVYQISF 312
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 178/322 (55%), Gaps = 16/322 (4%)
Query: 26 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVL 85
+GV G +N+PS SD+V + R+ I +R+Y AD L AL SGI +I+ + N+++
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 86 GIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVAS 145
I S S AA W+ NV Y P NI IA G++V A ++ AM NL+ AL A+
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGG---ATQSILPAMRNLNAALSAA 117
Query: 146 DLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPYYGY 205
L +K+ST D + FPPS F +A+ + + + L +T + + N YPY+ Y
Sbjct: 118 GLG-AIKVSTSIRFDEVANSFPPSAGVFKNAY---MTDVARLLASTGAPLLANVYPYFAY 173
Query: 206 TNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEGLNFSGIPVIVT 265
+ G ++YA F+P +V+ D N Y S+FDAMVDA Y ++E + V+V+
Sbjct: 174 RDNPGSISLNYATFQPGTTVR---DQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVS 230
Query: 266 ESGWPWLGGGNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFNEDKRPG 325
ESGWP GG A+ NA TYN +I V G P + + + TY++ +FNE+++ G
Sbjct: 231 ESGWPSAGG---FAASAGNARTYNQGLINHV--GGGTPKKREA-LETYIFAMFNENQKTG 284
Query: 326 PISEKNWGVFFTNGTSVYPLNF 347
+E+++G+F + + Y + F
Sbjct: 285 DATERSFGLFNPDKSPAYNIQF 306
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 173/324 (53%), Gaps = 14/324 (4%)
Query: 26 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVL 85
+GV G +N+PS D++ + AN I +R+Y +++ AL S IE+I+ V N+++
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 86 GIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNA--ASVLVSAMNNLHKALV 143
+ + S A GW+ N+ + P IAVG++V + A + AM N++ AL
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 144 ASDLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPYY 203
++ L Q+K+ST ++ +PP + F + S I I+ FL + N YPY+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 204 GYTNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEGLNFSGIPVI 263
G+ + P+ YALF Q +T Y ++FDA+VD+ Y++ E L I +I
Sbjct: 182 GHIDNTNAVPLSYALF------NQQRRNDT--GYQNLFDALVDSMYFATEKLGGQNIEII 233
Query: 264 VTESGWPWLGGGNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFNEDKR 323
V+ESGWP G ATL+NA TY N+I V G P +P I TY++ +F+E+++
Sbjct: 234 VSESGWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 324 PGPISEKNWGVFFTNGTSVYPLNF 347
G SEK++G+F + Y LNF
Sbjct: 291 KGEASEKHFGLFNPDQRPKYQLNF 314
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 172/324 (53%), Gaps = 14/324 (4%)
Query: 26 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVL 85
+GV G +N+PS D++ + AN I +R+Y +++ AL S IE+I+ V N+++
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 86 GIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNA--ASVLVSAMNNLHKALV 143
+ + S A GW+ N+ + P IAVG++V + A + AM N++ AL
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 144 ASDLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPYY 203
++ L Q+K+ST ++ +PP + F + S I I+ FL + N YPY+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 204 GYTNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEGLNFSGIPVI 263
G+ + P+ YALF Q +T Y ++FDA+VD+ Y++ E L I +I
Sbjct: 182 GHIDNTNAVPLSYALF------NQQRRNDT--GYQNLFDALVDSMYFATEKLGGQNIEII 233
Query: 264 VTESGWPWLGGGNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFNEDKR 323
V+ SGWP G ATL+NA TY N+I V G P +P I TY++ +F+E+++
Sbjct: 234 VSASGWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 324 PGPISEKNWGVFFTNGTSVYPLNF 347
G SEK++G+F + Y LNF
Sbjct: 291 KGEASEKHFGLFNPDQRPKYQLNF 314
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 179/325 (55%), Gaps = 14/325 (4%)
Query: 26 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVL 85
VGV G +N+P S+++A+ + + IT +R+YD + +L+AL S IE+I+GV N ++
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 86 GIGESASAAAGWINKNVAAYMPTTNITAIAVGSQ---VLTSIPNAASVLVSAMNNLHKAL 142
+ + S A W+ KNV + + IAVG++ V A ++ AM N+H A+
Sbjct: 62 SL-TNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 143 VASDLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPY 202
++ L Q+K+ST + ++ +PPS F S + I++FL + +S + N YPY
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPY 180
Query: 203 YGYTNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEGLNFSGIPV 262
+ Y + YALF PSV V + Y ++FDA +DA Y ++E + + V
Sbjct: 181 FTYAGNPRDISLPYALF-TSPSV---VVWDGQRGYKNLFDATLDALYSALERASGGSLEV 236
Query: 263 IVTESGWPWLGGGNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFNEDK 322
+V+ESGWP G AT +N TY +N+I+ V G P +P I TY++ +F+E+K
Sbjct: 237 VVSESGWPSAGA---FAATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDENK 291
Query: 323 RPGPISEKNWGVFFTNGTSVYPLNF 347
+ P EK++G+FF N Y LNF
Sbjct: 292 K-QPEVEKHFGLFFPNKWQKYNLNF 315
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 176/322 (54%), Gaps = 16/322 (4%)
Query: 26 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVL 85
+GV G +N+P+AS +V++ ++N I +RLY + L+A+ +GI V+VG N+ +
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 86 GIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVAS 145
+ S +AAA W+ N+ AY P + + VG++V A LV AM N+H ALVA+
Sbjct: 61 NLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGG---ATRNLVPAMKNVHGALVAA 116
Query: 146 DLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPYYGY 205
L +K++T S I+ PPS +F + + ++QFL T + M N YPY +
Sbjct: 117 GLG-HIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAW 175
Query: 206 TNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEGLNFSGIPVIVT 265
+ YALF +V + + + Y ++FD VDA Y ++ S + ++V+
Sbjct: 176 AYNPSAMDMGYALFNASGTVVR----DGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVS 231
Query: 266 ESGWPWLGGGNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFNEDKRPG 325
ESGWP GG T AT NA YN ++I V G P P I TY++ +FNE+++
Sbjct: 232 ESGWPSGGG---TAATPANARFYNQHLINHV--GRGTPRHPG-AIETYIFAMFNENQKDS 285
Query: 326 PISEKNWGVFFTNGTSVYPLNF 347
+ E+NWG+F+ N VYP+NF
Sbjct: 286 GV-EQNWGLFYPNMQHVYPINF 306
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 361 FCVAKDDADSDKLQNGLNWACGQGHANCSAIQPGQPCYLPNNIKSHASYAYNDYYQKMRS 420
+CV K D+L +N+AC QG +C IQPG C+ PN +K+HA+Y N YYQ
Sbjct: 13 WCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGR 71
Query: 421 VGGTCNFDGTAMTTTKDPSYGSCTYAGSSH 450
C+F TA T +PSYG+C + S+
Sbjct: 72 NSWNCDFSQTATLTNTNPSYGACNFPSGSN 101
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 5 KWLGSVVFLAIGLFTNVLGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYD---AD 61
K+LG+ FL +GL ++G Y+ V +G + N I+ + T++ +++ AD
Sbjct: 114 KYLGA--FLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALAD 171
Query: 62 SHMLKALSKSGIEVIVG 78
+ +L L G ++++G
Sbjct: 172 TLVLLTLPFQGTDILLG 188
>pdb|2XMN|A Chain A, High Resolution Snapshots Of Defined Tolc Open States
Present An Iris-Like Movement Of Periplasmic Entrance
Helices
pdb|2XMN|B Chain B, High Resolution Snapshots Of Defined Tolc Open States
Present An Iris-Like Movement Of Periplasmic Entrance
Helices
pdb|2XMN|C Chain C, High Resolution Snapshots Of Defined Tolc Open States
Present An Iris-Like Movement Of Periplasmic Entrance
Helices
Length = 428
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 114 IAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATF 173
+ Q+ ++ + + S+ NN++ ++ + + Q +S S+D + F T+T
Sbjct: 310 VGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGFSVGTSTI 369
Query: 174 NSAWN--STIYQILQFLKNTKSFYM---LNAYPYYGYTNGNGIFPIDYALFRPMPS 224
+ +T+Y Q L N + Y+ LN G N + ++ AL +P+ +
Sbjct: 370 VDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVST 425
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 63 EETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFP 98
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 62 EETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFP 97
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
Length = 286
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 62 EETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFP 97
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 62 EETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFP 97
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
Length = 286
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 62 EETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFP 97
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 169 STATFNSAWNSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
+ A T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 53 TNAKLEITREETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFP 97
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 62 EETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFP 97
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 62 EETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFP 97
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 62 EETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFP 97
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
Length = 286
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 62 EETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFP 97
>pdb|1TQQ|A Chain A, Structure Of Tolc In Complex With Hexamminecobalt
pdb|1TQQ|B Chain B, Structure Of Tolc In Complex With Hexamminecobalt
pdb|1TQQ|C Chain C, Structure Of Tolc In Complex With Hexamminecobalt
Length = 471
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 114 IAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATF 173
+ Q+ ++ + + S+ NN++ ++ + + Q +S S+D + + T T
Sbjct: 310 VGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTI 369
Query: 174 NSAWN--STIYQILQFLKNTKSFYM---LNAYPYYGYTNGNGIFPIDYALFRPMPSVKQI 228
+ +T+Y Q L N + Y+ LN G N + ++ AL +P+ + +
Sbjct: 370 VDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPEN 429
Query: 229 VDPNT 233
V P T
Sbjct: 430 VAPQT 434
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 62 EETLNPIIQDTKKGKLRFVRNCFPHHGYIHNFGAFP 97
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFP 213
T+ I+Q K K ++ N +P++GY + G FP
Sbjct: 63 EETLNPIIQDTKKGKLKFVRNCFPHHGYIHNYGAFP 98
>pdb|2VDD|A Chain A, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDD|B Chain B, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDD|C Chain C, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|A Chain A, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|B Chain B, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|C Chain C, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
Length = 460
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 114 IAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATF 173
+ Q+ ++ + + S+ NN++ ++ + + Q +S S+D + F T T
Sbjct: 332 VGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGFSVGTETI 391
Query: 174 NSAWN--STIYQILQFLKNTKSFYM---LNAYPYYGYTNGNGIFPIDYALFRPMPS 224
+ +T+Y Q L N + Y+ LN G N + ++ AL +P+ +
Sbjct: 392 VDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVST 447
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,910,999
Number of Sequences: 62578
Number of extensions: 644096
Number of successful extensions: 1418
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1368
Number of HSP's gapped (non-prelim): 41
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)