Query 011131
Match_columns 493
No_of_seqs 282 out of 1634
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 7.1E-84 1.5E-88 656.0 22.3 310 26-347 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 3.2E-44 6.9E-49 347.6 24.3 251 23-339 43-305 (305)
3 smart00768 X8 Possibly involve 100.0 8.3E-29 1.8E-33 206.5 8.2 85 360-445 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.9 1.7E-22 3.8E-27 165.6 6.4 73 360-432 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.8 2.1E-18 4.5E-23 173.5 12.2 236 25-340 29-294 (314)
6 PF07745 Glyco_hydro_53: Glyco 99.1 2.1E-08 4.7E-13 103.4 23.1 244 41-346 27-330 (332)
7 COG3867 Arabinogalactan endo-1 98.5 5E-06 1.1E-10 83.4 17.8 252 40-346 65-389 (403)
8 PRK10150 beta-D-glucuronidase; 98.3 0.00011 2.4E-09 82.0 24.1 241 41-345 316-585 (604)
9 PF00150 Cellulase: Cellulase 98.2 0.00021 4.6E-09 70.6 20.2 129 24-154 9-171 (281)
10 smart00633 Glyco_10 Glycosyl h 97.5 0.013 2.9E-07 58.4 19.6 80 248-345 171-251 (254)
11 TIGR03356 BGL beta-galactosida 97.1 0.073 1.6E-06 57.3 21.6 45 40-84 56-119 (427)
12 PF02836 Glyco_hydro_2_C: Glyc 97.1 0.036 7.9E-07 56.3 17.6 122 25-157 17-158 (298)
13 PF11790 Glyco_hydro_cc: Glyco 97.0 0.043 9.2E-07 54.4 17.0 190 73-341 39-232 (239)
14 PF00232 Glyco_hydro_1: Glycos 96.1 0.015 3.3E-07 62.9 7.9 117 40-160 60-224 (455)
15 PLN02998 beta-glucosidase 95.2 2.2 4.8E-05 46.9 20.4 46 40-85 84-148 (497)
16 PLN02814 beta-glucosidase 95.2 2.2 4.8E-05 47.0 20.3 47 40-86 79-144 (504)
17 PRK10340 ebgA cryptic beta-D-g 94.9 1.3 2.7E-05 53.1 18.4 96 26-121 337-451 (1021)
18 PLN02849 beta-glucosidase 94.4 5.7 0.00012 43.8 21.0 47 40-86 81-146 (503)
19 PRK13511 6-phospho-beta-galact 94.0 9.5 0.00021 41.7 21.5 47 40-86 56-121 (469)
20 PRK09593 arb 6-phospho-beta-gl 92.1 22 0.00047 39.1 22.8 47 40-86 75-141 (478)
21 PRK15014 6-phospho-beta-glucos 89.4 37 0.00081 37.3 23.5 46 40-85 71-136 (477)
22 PRK09852 cryptic 6-phospho-bet 89.0 40 0.00086 37.0 22.8 47 40-86 73-139 (474)
23 PF02449 Glyco_hydro_42: Beta- 87.3 5.3 0.00012 42.0 11.1 83 40-122 12-140 (374)
24 TIGR01233 lacG 6-phospho-beta- 86.6 54 0.0012 35.9 21.5 47 40-86 55-120 (467)
25 PRK09936 hypothetical protein; 84.2 8.3 0.00018 39.5 10.1 72 12-83 8-96 (296)
26 PF01229 Glyco_hydro_39: Glyco 83.9 52 0.0011 36.0 17.1 249 45-342 47-350 (486)
27 PRK09589 celA 6-phospho-beta-g 82.7 81 0.0018 34.6 23.1 46 40-85 69-134 (476)
28 cd02875 GH18_chitobiase Chitob 80.5 16 0.00035 38.4 11.2 133 51-203 55-190 (358)
29 COG3934 Endo-beta-mannanase [C 73.8 15 0.00032 40.3 8.4 91 95-205 123-213 (587)
30 PRK09525 lacZ beta-D-galactosi 72.5 24 0.00052 42.4 10.8 97 25-121 352-464 (1027)
31 PF14488 DUF4434: Domain of un 71.9 53 0.0011 30.8 11.0 100 41-145 23-151 (166)
32 PF03662 Glyco_hydro_79n: Glyc 70.2 15 0.00033 38.2 7.5 177 64-276 114-302 (319)
33 PLN03059 beta-galactosidase; P 63.8 1.2E+02 0.0027 35.6 13.7 116 41-158 62-223 (840)
34 COG4669 EscJ Type III secretor 63.7 62 0.0013 32.4 9.8 146 5-177 4-158 (246)
35 PF00925 GTP_cyclohydro2: GTP 62.7 11 0.00023 35.5 4.3 38 43-80 131-168 (169)
36 smart00481 POLIIIAc DNA polyme 61.1 31 0.00068 26.6 6.1 44 38-81 15-63 (67)
37 COG4782 Uncharacterized protei 59.2 30 0.00065 36.7 7.2 60 237-299 125-187 (377)
38 PF13547 GTA_TIM: GTA TIM-barr 56.6 13 0.00029 37.9 4.0 81 109-203 18-110 (299)
39 TIGR00505 ribA GTP cyclohydrol 56.4 19 0.0004 34.6 4.8 33 44-76 131-163 (191)
40 PRK00393 ribA GTP cyclohydrola 56.1 19 0.00041 34.8 4.8 33 44-76 134-166 (197)
41 cd02874 GH18_CFLE_spore_hydrol 53.3 75 0.0016 32.3 9.0 84 61-147 47-138 (313)
42 cd00598 GH18_chitinase-like Th 49.7 77 0.0017 29.7 7.9 84 63-147 53-142 (210)
43 cd02872 GH18_chitolectin_chito 49.5 97 0.0021 32.2 9.3 80 66-146 62-151 (362)
44 COG2730 BglC Endoglucanase [Ca 47.2 1.5E+02 0.0032 31.8 10.4 105 41-146 76-219 (407)
45 cd00641 GTP_cyclohydro2 GTP cy 45.6 34 0.00074 32.8 4.8 36 44-79 133-168 (193)
46 cd04743 NPD_PKS 2-Nitropropane 45.3 1.4E+02 0.0031 31.1 9.6 57 24-81 56-112 (320)
47 PRK12485 bifunctional 3,4-dihy 45.3 27 0.00058 37.2 4.3 34 43-77 330-363 (369)
48 PLN00196 alpha-amylase; Provis 43.4 1E+02 0.0022 33.4 8.5 55 26-80 29-113 (428)
49 PRK14019 bifunctional 3,4-dihy 42.5 32 0.00068 36.6 4.3 36 44-80 328-363 (367)
50 TIGR03632 bact_S11 30S ribosom 39.8 67 0.0014 28.0 5.3 37 40-76 49-90 (108)
51 PRK09314 bifunctional 3,4-dihy 38.7 42 0.00092 35.3 4.5 34 43-76 300-334 (339)
52 PF05990 DUF900: Alpha/beta hy 38.4 1.2E+02 0.0027 29.7 7.6 43 253-298 43-88 (233)
53 PRK08815 GTP cyclohydrolase; P 38.1 46 0.001 35.5 4.7 37 44-80 305-341 (375)
54 PRK09318 bifunctional 3,4-dihy 37.8 48 0.001 35.5 4.8 38 44-81 320-357 (387)
55 COG1433 Uncharacterized conser 37.4 73 0.0016 28.5 5.2 40 41-80 55-94 (121)
56 PLN02831 Bifunctional GTP cycl 37.0 48 0.001 36.2 4.7 37 44-80 373-409 (450)
57 PRK09311 bifunctional 3,4-dihy 36.2 51 0.0011 35.5 4.8 38 43-80 338-375 (402)
58 PRK09989 hypothetical protein; 35.6 3.9E+02 0.0085 26.1 10.8 52 25-77 3-58 (258)
59 PF01301 Glyco_hydro_35: Glyco 35.5 4.7E+02 0.01 27.1 11.6 110 41-155 27-180 (319)
60 PF13377 Peripla_BP_3: Peripla 35.4 3E+02 0.0065 24.0 9.1 122 44-188 1-134 (160)
61 PRK09319 bifunctional 3,4-dihy 35.2 54 0.0012 36.7 4.8 39 43-81 342-380 (555)
62 smart00636 Glyco_18 Glycosyl h 34.7 1.6E+02 0.0034 30.1 8.0 80 65-145 57-142 (334)
63 TIGR01579 MiaB-like-C MiaB-lik 34.1 2.4E+02 0.0052 30.0 9.6 61 126-205 270-330 (414)
64 TIGR03628 arch_S11P archaeal r 33.9 91 0.002 27.7 5.2 37 40-76 52-101 (114)
65 PRK13347 coproporphyrinogen II 33.1 66 0.0014 34.9 5.1 96 41-149 152-283 (453)
66 COG4213 XylF ABC-type xylose t 32.8 94 0.002 32.4 5.7 76 63-157 176-251 (341)
67 COG3250 LacZ Beta-galactosidas 32.6 1.9E+02 0.004 34.2 8.8 97 26-122 303-409 (808)
68 cd06545 GH18_3CO4_chitinase Th 32.6 1.1E+02 0.0024 30.2 6.3 81 63-147 50-133 (253)
69 cd01543 PBP1_XylR Ligand-bindi 32.1 3.9E+02 0.0085 25.5 10.0 128 41-188 98-238 (265)
70 PF12876 Cellulase-like: Sugar 31.2 1.2E+02 0.0026 24.9 5.3 47 108-156 8-63 (88)
71 COG2113 ProX ABC-type proline/ 31.2 1.1E+02 0.0024 31.6 6.2 40 44-84 51-91 (302)
72 PF14871 GHL6: Hypothetical gl 30.8 1.4E+02 0.003 26.9 6.0 44 39-82 1-67 (132)
73 PF00411 Ribosomal_S11: Riboso 29.4 88 0.0019 27.3 4.4 37 41-77 50-91 (110)
74 CHL00041 rps11 ribosomal prote 29.1 1.3E+02 0.0027 26.7 5.3 36 41-76 63-103 (116)
75 PRK09607 rps11p 30S ribosomal 28.6 1.3E+02 0.0029 27.3 5.4 37 40-76 59-108 (132)
76 PRK07198 hypothetical protein; 28.1 54 0.0012 35.2 3.2 37 44-80 338-375 (418)
77 PRK14326 (dimethylallyl)adenos 27.0 4.5E+02 0.0099 29.0 10.4 58 126-202 289-346 (502)
78 KOG0078 GTP-binding protein SE 26.7 1.6E+02 0.0035 28.9 6.0 82 23-121 42-128 (207)
79 PRK05309 30S ribosomal protein 26.6 1.5E+02 0.0032 26.8 5.4 36 41-76 67-107 (128)
80 PRK14334 (dimethylallyl)adenos 26.3 5.6E+02 0.012 27.6 10.8 58 126-202 269-326 (440)
81 PF00704 Glyco_hydro_18: Glyco 26.2 3.2E+02 0.0069 27.6 8.5 115 70-204 71-196 (343)
82 cd02876 GH18_SI-CLP Stabilin-1 26.1 5.6E+02 0.012 26.1 10.3 85 62-147 54-148 (318)
83 PRK14042 pyruvate carboxylase 25.8 5.3E+02 0.012 29.3 10.7 42 40-81 94-145 (596)
84 COG0807 RibA GTP cyclohydrolas 25.5 1.3E+02 0.0029 29.1 5.1 39 44-82 133-171 (193)
85 PF00331 Glyco_hydro_10: Glyco 25.1 78 0.0017 32.7 3.8 220 63-344 63-312 (320)
86 KOG1412 Aspartate aminotransfe 24.5 1.9E+02 0.0041 30.5 6.2 123 30-165 188-351 (410)
87 COG5016 Pyruvate/oxaloacetate 23.0 1.1E+02 0.0024 33.0 4.4 41 41-81 97-147 (472)
88 PF13721 SecD-TM1: SecD export 22.2 2.7E+02 0.0058 23.9 6.0 36 22-57 30-65 (101)
89 KOG0626 Beta-glucosidase, lact 21.7 1.7E+02 0.0036 32.7 5.6 75 256-338 404-486 (524)
90 PF06953 ArsD: Arsenical resis 21.2 5.6E+02 0.012 22.9 8.0 63 63-131 31-94 (123)
91 TIGR03234 OH-pyruv-isom hydrox 21.0 2.4E+02 0.0053 27.4 6.3 51 26-77 3-57 (254)
92 TIGR01125 MiaB-like tRNA modif 20.5 9.1E+02 0.02 25.8 11.0 61 126-205 267-327 (430)
93 cd07944 DRE_TIM_HOA_like 4-hyd 20.5 8.5E+02 0.018 24.4 10.1 88 43-142 87-180 (266)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=7.1e-84 Score=655.97 Aligned_cols=310 Identities=47% Similarity=0.859 Sum_probs=255.4
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEecCcchhhhcccHHHHHHHHHHhhccc
Q 011131 26 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGESASAAAGWINKNVAAY 105 (493)
Q Consensus 26 ~GVnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~n~~~~~la~~~~~a~~wv~~~v~~~ 105 (493)
||||||+.++|+|++.++++++|+++|++||||++|+++|+|++++||+|++||+|+++.++++++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCccccccchhHHHHHHH
Q 011131 106 MPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQIL 185 (493)
Q Consensus 106 ~~~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll 185 (493)
+|.++|++|+||||++...... .|+|+|+++|++|++.||+++|||+|++.++++..+||||.|.|+.++.++|++++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l 158 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA--YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLL 158 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce--eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHH
Confidence 9999999999999999765433 89999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHhcCCcccccccCCccccCCCCccccccccccCCCCCCceecCCCCcccccHHHHHHHHHHHHHHhcCCCCCcEEEe
Q 011131 186 QFLKNTKSFYMLNAYPYYGYTNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEGLNFSGIPVIVT 265 (493)
Q Consensus 186 ~fL~~~~d~~~vNiyPyf~~~~~~~~i~l~~Alf~~~~~~~g~~d~~~~~~y~n~fda~~Dav~~a~~k~g~~~~~ivVs 265 (493)
+||.++++|||+|+||||.+..+|..++||||+|++ +.++.|. +++|+||||+|+|++++||+|+|+++++|+|+
T Consensus 159 ~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~---~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ 233 (310)
T PF00332_consen 159 KFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQP---NSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVG 233 (310)
T ss_dssp HHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-S---SS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEE
T ss_pred HHhhccCCCceeccchhhhccCCcccCCcccccccc---ccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEe
Confidence 999999999999999999999999999999999998 6666654 78999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEecCCCCCCCCCCCceeeeecCCCceeeec
Q 011131 266 ESGWPWLGGGNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFNEDKRPGPISEKNWGVFFTNGTSVYPL 345 (493)
Q Consensus 266 ETGWPS~G~~~~~~As~~na~~y~~~lv~~~~s~~GTP~rpg~~~~~y~F~~FDE~wK~G~~~E~~wGlf~~d~~~ky~l 345 (493)
||||||+|+ .+|+.+||+.|++++++++. .|||+||+..+++||||+|||+||+|+.+|||||||++||++||+|
T Consensus 234 ETGWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~ 308 (310)
T PF00332_consen 234 ETGWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDL 308 (310)
T ss_dssp EE---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS--
T ss_pred ccccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCC
Confidence 999999999 35899999999999999997 6999999999999999999999999988999999999999999999
Q ss_pred cc
Q 011131 346 NF 347 (493)
Q Consensus 346 ~~ 347 (493)
+|
T Consensus 309 ~f 310 (310)
T PF00332_consen 309 DF 310 (310)
T ss_dssp --
T ss_pred CC
Confidence 86
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-44 Score=347.58 Aligned_cols=251 Identities=20% Similarity=0.333 Sum_probs=203.7
Q ss_pred ccceeEEecCCCCCC--CCHHHHHHH---HHhCCCCEEEEccCCh----HHHHHHhhCCCeEEEEecCcchhhhcccHHH
Q 011131 23 GAYVGVNIGTDVSNM--PSASDIVAI---LRANQITHVRLYDADS----HMLKALSKSGIEVIVGVLNEEVLGIGESASA 93 (493)
Q Consensus 23 ~~~~GVnYg~~~~nl--ps~~~vv~l---lk~~~i~~VRiY~~d~----~vL~A~a~~gi~V~lGv~n~~~~~la~~~~~ 93 (493)
.+..+|+||++.+++ ++.+++... |+..+ ..||+|++|+ +|++|+...|++|+||||..+..+- .
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t-~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~-----~ 116 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYT-HSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHD-----A 116 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCC-ceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhh-----h
Confidence 356899999999886 678887554 44443 3999999886 7889999999999999997653221 1
Q ss_pred HHHHHHHhhcccCCCceEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCcccc
Q 011131 94 AAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATF 173 (493)
Q Consensus 94 a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g~F 173 (493)
.+.-+...+.++..++.|++|.||||+|+|++.++++|+.+|.++|++|+++|+++ ||+|++.|.+|.+. |
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g--pV~T~dsw~~~~~n-p------ 187 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG--PVTTVDSWNVVINN-P------ 187 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC--ceeecccceeeeCC-h------
Confidence 22245667888888999999999999999999999999999999999999999975 89999999988762 2
Q ss_pred ccchhHHHHHHHHHHHhcCCcccccccCCccccCCCCccccccccccCCCCCCceecCCCCcccccHHHHHHHHHHHHHH
Q 011131 174 NSAWNSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIE 253 (493)
Q Consensus 174 ~~~~~~~l~~ll~fL~~~~d~~~vNiyPyf~~~~~~~~i~l~~Alf~~~~~~~g~~d~~~~~~y~n~fda~~Dav~~a~~ 253 (493)
+ |+++.||+|+|.||||+.....+ + .+ .++-.|+.-++++.
T Consensus 188 --~-----------l~~~SDfia~N~~aYwd~~~~a~-------------------~-----~~-~f~~~q~e~vqsa~- 228 (305)
T COG5309 188 --E-----------LCQASDFIAANAHAYWDGQTVAN-------------------A-----AG-TFLLEQLERVQSAC- 228 (305)
T ss_pred --H-----------Hhhhhhhhhcccchhccccchhh-------------------h-----hh-HHHHHHHHHHHHhc-
Confidence 2 47888999999999999753211 0 01 24455676665542
Q ss_pred hcCCCCCcEEEeeccCCCCCCCCCCC-CChHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEecCCCCCC-CC-CCCc
Q 011131 254 GLNFSGIPVIVTESGWPWLGGGNETD-ATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFNEDKRP-GP-ISEK 330 (493)
Q Consensus 254 k~g~~~~~ivVsETGWPS~G~~~~~~-As~~na~~y~~~lv~~~~s~~GTP~rpg~~~~~y~F~~FDE~wK~-G~-~~E~ 330 (493)
| .+|+++|+||||||+|..++.+ ||++||+.|.+++++.+++. ++++|+||+|||+||. |. ++|+
T Consensus 229 --g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~---------G~d~fvfeAFdd~WK~~~~y~VEk 296 (305)
T COG5309 229 --G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC---------GYDVFVFEAFDDDWKADGSYGVEK 296 (305)
T ss_pred --C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc---------CccEEEeeeccccccCccccchhh
Confidence 2 4599999999999999998754 99999999999999999753 6899999999999995 55 7999
Q ss_pred eeeeecCCC
Q 011131 331 NWGVFFTNG 339 (493)
Q Consensus 331 ~wGlf~~d~ 339 (493)
|||+++.++
T Consensus 297 ywGv~~s~~ 305 (305)
T COG5309 297 YWGVLSSDR 305 (305)
T ss_pred ceeeeccCC
Confidence 999998764
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.95 E-value=8.3e-29 Score=206.48 Aligned_cols=85 Identities=60% Similarity=1.140 Sum_probs=82.7
Q ss_pred eeEEEcCCCChHHHHhHhhhhccCCCCCCCccCCCCCCCCCCChhhhhhHHHHHHHHhhcCCCCCCcCCCceEEEecCCC
Q 011131 360 VFCVAKDDADSDKLQNGLNWACGQGHANCSAIQPGQPCYLPNNIKSHASYAYNDYYQKMRSVGGTCNFDGTAMTTTKDPS 439 (493)
Q Consensus 360 ~~Cv~~~~~~~~~l~~~l~~aCg~~~~dC~~I~~~g~C~~~~t~~~~aSya~N~Yyq~~~~~~~aCdF~G~a~~~~~dps 439 (493)
+|||+|+++++++||++|||||+++ +||++|++||+||+||++++|||||||+|||++++...+|||+|+|++++.|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 4999999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCeee
Q 011131 440 YGSCTY 445 (493)
Q Consensus 440 ~~~C~~ 445 (493)
+++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999975
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.87 E-value=1.7e-22 Score=165.60 Aligned_cols=73 Identities=47% Similarity=0.873 Sum_probs=61.6
Q ss_pred eeEEEcCCCChHHHHhHhhhhccCCCCCCCccCCCCC-----CCCCCChhhhhhHHHHHHHHhhcCCCCCCcCCCceE
Q 011131 360 VFCVAKDDADSDKLQNGLNWACGQGHANCSAIQPGQP-----CYLPNNIKSHASYAYNDYYQKMRSVGGTCNFDGTAM 432 (493)
Q Consensus 360 ~~Cv~~~~~~~~~l~~~l~~aCg~~~~dC~~I~~~g~-----C~~~~t~~~~aSya~N~Yyq~~~~~~~aCdF~G~a~ 432 (493)
+|||+|+++++++|+++|||||+++++||++|++||+ .|++|+.++|||||||+|||++++...+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 5999999999999999999999998799999999998 566666699999999999999999999999999996
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.77 E-value=2.1e-18 Score=173.52 Aligned_cols=236 Identities=21% Similarity=0.365 Sum_probs=126.2
Q ss_pred ceeEEecCCCCC--------CCCH---HHHHHHHHhCCCCEEEEccCCh-----HHHHHHhhCCCeEEEEecCcchhhhc
Q 011131 25 YVGVNIGTDVSN--------MPSA---SDIVAILRANQITHVRLYDADS-----HMLKALSKSGIEVIVGVLNEEVLGIG 88 (493)
Q Consensus 25 ~~GVnYg~~~~n--------lps~---~~vv~llk~~~i~~VRiY~~d~-----~vL~A~a~~gi~V~lGv~n~~~~~la 88 (493)
..||.|-|.++. |..+ ++++.+||++|++.||+|..|+ .+|++|++.||.|+++|..+. .++.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 369999998762 1122 5678899999999999999885 799999999999999999763 3333
Q ss_pred ccHHHHHHHH-------HHhhcccCCCceEEEEEeccccccCCC--CCHHHHHHHHHHHHHHHHhCCCCCceEEeccccC
Q 011131 89 ESASAAAGWI-------NKNVAAYMPTTNITAIAVGSQVLTSIP--NAASVLVSAMNNLHKALVASDLNFQVKISTPHSM 159 (493)
Q Consensus 89 ~~~~~a~~wv-------~~~v~~~~~~~~I~~I~VGNEvl~~~~--~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~ 159 (493)
+.. -+..|- ..-|..+...+|+.++.+||||+.... ..++.+.+++|++|+.+++.+++. |||+.+-+.
T Consensus 108 r~~-P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~-IPVGYsaaD 185 (314)
T PF03198_consen 108 RSD-PAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRS-IPVGYSAAD 185 (314)
T ss_dssp TTS-------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCC-CcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCC-CceeEEccC
Confidence 221 112442 222444545689999999999998753 358899999999999999999975 999987543
Q ss_pred ccccCCCCCCccccccchhHHHHHHHHHHHh-----cCCcccccccCCccccCCCCccccccccccCCCCCCceecCCCC
Q 011131 160 DIIPRPFPPSTATFNSAWNSTIYQILQFLKN-----TKSFYMLNAYPYYGYTNGNGIFPIDYALFRPMPSVKQIVDPNTL 234 (493)
Q Consensus 160 ~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~~-----~~d~~~vNiyPyf~~~~~~~~i~l~~Alf~~~~~~~g~~d~~~~ 234 (493)
. .....++.+||.+ ..|++++|.|- |+++.. |+. +|
T Consensus 186 ~-----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~---WCg~St--------f~~----SG------- 226 (314)
T PF03198_consen 186 D-----------------AEIRQDLANYLNCGDDDERIDFFGLNSYE---WCGDST--------FET----SG------- 226 (314)
T ss_dssp ------------------TTTHHHHHHHTTBTT-----S-EEEEE-------SS----------HHH----HS-------
T ss_pred C-----------------hhHHHHHHHHhcCCCcccccceeeeccce---ecCCCc--------ccc----cc-------
Confidence 2 1224567888875 46899999994 443221 322 22
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCcEEEeeccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 011131 235 FHYNSMFDAMVDATYYSIEGLNFSGIPVIVTESGWPWLGGGNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYV 314 (493)
Q Consensus 235 ~~y~n~fda~~Dav~~a~~k~g~~~~~ivVsETGWPS~G~~~~~~As~~na~~y~~~lv~~~~s~~GTP~rpg~~~~~y~ 314 (493)
|..+ ....+ ++ .+||+.+|.|+.+..... =.|-+..| ..-|..+.++ ..+
T Consensus 227 --y~~l--------~~~f~--~y-~vPvffSEyGCn~~~pR~----f~ev~aly-~~~Mt~v~SG------------Giv 276 (314)
T PF03198_consen 227 --YDRL--------TKEFS--NY-SVPVFFSEYGCNTVTPRT----FTEVPALY-SPEMTDVWSG------------GIV 276 (314)
T ss_dssp --HHHH--------HHHHT--T--SS-EEEEEE---SSSS-------THHHHHT-SHHHHTTEEE------------EEE
T ss_pred --HHHH--------HHHhh--CC-CCCeEEcccCCCCCCCcc----chHhHHhh-Cccchhheec------------eEE
Confidence 3222 22222 33 699999999998655210 01112222 2223333332 678
Q ss_pred EEecCCCCCCCCCCCceeeeecCCCc
Q 011131 315 YELFNEDKRPGPISEKNWGVFFTNGT 340 (493)
Q Consensus 315 F~~FDE~wK~G~~~E~~wGlf~~d~~ 340 (493)
||.|.| +++|||...++.
T Consensus 277 YEy~~e--------~n~yGlV~~~~~ 294 (314)
T PF03198_consen 277 YEYFQE--------ANNYGLVEISGD 294 (314)
T ss_dssp S-SB----------SSS--SEEE-TT
T ss_pred EEEecc--------CCceEEEEEcCC
Confidence 999987 678999987654
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.09 E-value=2.1e-08 Score=103.42 Aligned_cols=244 Identities=20% Similarity=0.301 Sum_probs=122.7
Q ss_pred HHHHHHHHhCCCCEEEE--cc-C------C-hH---HHHHHhhCCCeEEEEecCcc---------h-hhhcc-cH----H
Q 011131 41 SDIVAILRANQITHVRL--YD-A------D-SH---MLKALSKSGIEVIVGVLNEE---------V-LGIGE-SA----S 92 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRi--Y~-~------d-~~---vL~A~a~~gi~V~lGv~n~~---------~-~~la~-~~----~ 92 (493)
.+++++||..|++.||+ |- + | .. ..+.+++.||+|+|..--++ + .+... +. +
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~ 106 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAK 106 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHH
T ss_pred CCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHH
Confidence 67899999999986554 42 1 2 13 44556679999999987643 1 01111 11 1
Q ss_pred HHHHHHHHhhcccC-CCceEEEEEeccccccC-----C-CCCHHHHHHHHHHHHHHHHhCCCCCceEEec--cccCcccc
Q 011131 93 AAAGWINKNVAAYM-PTTNITAIAVGSQVLTS-----I-PNAASVLVSAMNNLHKALVASDLNFQVKIST--PHSMDIIP 163 (493)
Q Consensus 93 ~a~~wv~~~v~~~~-~~~~I~~I~VGNEvl~~-----~-~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT--a~~~~vl~ 163 (493)
+..++.++-+...- -...++.|-||||.-.. + ....+.+...++...+++++..- ++||-. +...+
T Consensus 107 ~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~~~~~--- 181 (332)
T PF07745_consen 107 AVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLANGGD--- 181 (332)
T ss_dssp HHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES-TTS---
T ss_pred HHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEECCCCc---
Confidence 22222222222111 14678899999998542 1 23456677777777777777443 355433 22111
Q ss_pred CCCCCCccccccchhHHHHHHHHHHHhc---CCcccccccCCccccCCCCccccccccccCCCCCCceecCCCCcccccH
Q 011131 164 RPFPPSTATFNSAWNSTIYQILQFLKNT---KSFYMLNAYPYYGYTNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSM 240 (493)
Q Consensus 164 ~s~pPs~g~F~~~~~~~l~~ll~fL~~~---~d~~~vNiyPyf~~~~~~~~i~l~~Alf~~~~~~~g~~d~~~~~~y~n~ 240 (493)
...++-..+.|... -|+++++.||||... + +-
T Consensus 182 --------------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-----l--------------------------~~ 216 (332)
T PF07745_consen 182 --------------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-----L--------------------------ED 216 (332)
T ss_dssp --------------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST------H--------------------------HH
T ss_pred --------------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch-----H--------------------------HH
Confidence 11223334444443 489999999999851 0 01
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEeeccCCCCCCC-----CC---------CCCChHHHHHHHHHHHHhhhcCCCCCCCC
Q 011131 241 FDAMVDATYYSIEGLNFSGIPVIVTESGWPWLGGG-----NE---------TDATLENAETYNNNMIRRVLNDTGPPSQP 306 (493)
Q Consensus 241 fda~~Dav~~a~~k~g~~~~~ivVsETGWPS~G~~-----~~---------~~As~~na~~y~~~lv~~~~s~~GTP~rp 306 (493)
+...++.+ .++. +|+|+|.|||||..-.. +. -.+|++.|+.|++++++.+.+..+
T Consensus 217 l~~~l~~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~----- 285 (332)
T PF07745_consen 217 LKNNLNDL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN----- 285 (332)
T ss_dssp HHHHHHHH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------
T ss_pred HHHHHHHH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----
Confidence 12222222 2333 58999999999997211 10 016899999999999999875211
Q ss_pred CCcceEEEEEe-cCCCC-----CCCCCCCceeeeecCCCceeeecc
Q 011131 307 DMPINTYVYEL-FNEDK-----RPGPISEKNWGVFFTNGTSVYPLN 346 (493)
Q Consensus 307 g~~~~~y~F~~-FDE~w-----K~G~~~E~~wGlf~~d~~~ky~l~ 346 (493)
+.++-+|+-|- .-..+ ..|...|+. +||+.+|++--.|+
T Consensus 286 ~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 286 GGGLGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSLD 330 (332)
T ss_dssp TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGGG
T ss_pred CCeEEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchHhh
Confidence 12556666552 11111 123344444 89998888765543
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=5e-06 Score=83.36 Aligned_cols=252 Identities=17% Similarity=0.231 Sum_probs=133.0
Q ss_pred HHHHHHHHHhCCCCEEEE--c----cCC--------hH------HHHHHhhCCCeEEEEecCcchhhhcccHHHHHHH--
Q 011131 40 ASDIVAILRANQITHVRL--Y----DAD--------SH------MLKALSKSGIEVIVGVLNEEVLGIGESASAAAGW-- 97 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRi--Y----~~d--------~~------vL~A~a~~gi~V~lGv~n~~~~~la~~~~~a~~w-- 97 (493)
+++.++.||..|++.||+ | |.| .+ +-+.+.+.||||++..--++.-+-..-+..-.+|
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 566789999999986554 4 333 12 3334457899999998765421100001111233
Q ss_pred -----HHHhhcccC---------CCceEEEEEeccccccC-----CCC-CHHHHHHHHHHHHHHHHhCCCCCceEEeccc
Q 011131 98 -----INKNVAAYM---------PTTNITAIAVGSQVLTS-----IPN-AASVLVSAMNNLHKALVASDLNFQVKISTPH 157 (493)
Q Consensus 98 -----v~~~v~~~~---------~~~~I~~I~VGNEvl~~-----~~~-~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~ 157 (493)
+++.|-.|. ....+..|=||||.-.. ++. ....+...++.--++++... .+|||---.
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lHl 222 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALHL 222 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEEe
Confidence 233332221 13467789999998542 111 23344444444444444432 246665322
Q ss_pred cCccccCCCCCCccccccchhHHHHHHHHHHHhcC---CcccccccCCccccCCCCccccccccccCCCCCCceecCCCC
Q 011131 158 SMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTK---SFYMLNAYPYYGYTNGNGIFPIDYALFRPMPSVKQIVDPNTL 234 (493)
Q Consensus 158 ~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~~~~---d~~~vNiyPyf~~~~~~~~i~l~~Alf~~~~~~~g~~d~~~~ 234 (493)
+ +.-. .+.|| -+.|-|.+.+ |.|++-.||||...-+ .
T Consensus 223 a-----~g~~--n~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgtl~-------------------------n 262 (403)
T COG3867 223 A-----EGEN--NSLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGTLN-------------------------N 262 (403)
T ss_pred c-----CCCC--Cchhh--------HHHHHHHHcCCCceEEeeeccccccCcHH-------------------------H
Confidence 1 1111 23333 2333344432 7899999999997311 0
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCcEEEeeccC--------------CCCCCCCCCCCChHHHHHHHHHHHHhhhcCC
Q 011131 235 FHYNSMFDAMVDATYYSIEGLNFSGIPVIVTESGW--------------PWLGGGNETDATLENAETYNNNMIRRVLNDT 300 (493)
Q Consensus 235 ~~y~n~fda~~Dav~~a~~k~g~~~~~ivVsETGW--------------PS~G~~~~~~As~~na~~y~~~lv~~~~s~~ 300 (493)
+ -+|| +.+- .+ -+|.|+|.||+. |+.+...+--.+++-|++|.+++|+.+.+..
T Consensus 263 L-~~nl-~dia-------~r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp 330 (403)
T COG3867 263 L-TTNL-NDIA-------SR---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVP 330 (403)
T ss_pred H-HhHH-HHHH-------HH---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCC
Confidence 1 0122 2111 11 368999999998 4444221112678899999999999986431
Q ss_pred -------------CCCCCCCCcceE-EEEEecCCCCCCCCCCCceeeeecCCCceeeecc
Q 011131 301 -------------GPPSQPDMPINT-YVYELFNEDKRPGPISEKNWGVFFTNGTSVYPLN 346 (493)
Q Consensus 301 -------------GTP~rpg~~~~~-y~F~~FDE~wK~G~~~E~~wGlf~~d~~~ky~l~ 346 (493)
.-|.++|.+..+ |--++-.|+|+.|..+++. -||+.+|.|.-+|+
T Consensus 331 ~~~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~ 389 (403)
T COG3867 331 KSNGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLN 389 (403)
T ss_pred CCCceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchh
Confidence 134444433332 3333445667666543332 56666666655553
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.33 E-value=0.00011 Score=82.04 Aligned_cols=241 Identities=15% Similarity=0.107 Sum_probs=136.7
Q ss_pred HHHHHHHHhCCCCEEEEc--cCChHHHHHHhhCCCeEEEEecCcc---------------hhhhc------ccHHHHHHH
Q 011131 41 SDIVAILRANQITHVRLY--DADSHMLKALSKSGIEVIVGVLNEE---------------VLGIG------ESASAAAGW 97 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRiY--~~d~~vL~A~a~~gi~V~lGv~n~~---------------~~~la------~~~~~a~~w 97 (493)
.+++++||+.|++.||+- -.++..+.++-..||-|+.-++... .+... ...+...+-
T Consensus 316 ~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQA 395 (604)
T ss_pred HHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 456788999999999993 3367899999999999986654210 00010 011122233
Q ss_pred HHHhhcccCCCceEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCccccccch
Q 011131 98 INKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATFNSAW 177 (493)
Q Consensus 98 v~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g~F~~~~ 177 (493)
+++.|..+.-...|..-.+|||.-... ......++.+.+.+++..-++ +|+.+..+. .+|.. ..
T Consensus 396 ~~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR--~vt~~~~~~-----~~~~~----~~- 459 (604)
T PRK10150 396 IRELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTR--PVTCVNVMF-----ATPDT----DT- 459 (604)
T ss_pred HHHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCC--ceEEEeccc-----CCccc----cc-
Confidence 555666655456788999999964321 223344455555555554333 566654211 01100 00
Q ss_pred hHHHHHHHHHHHhcCCcccccccCCccccCCCCccccccccccCCCCCCceecCCCCcccccHHHHHHHHHHHHHHhcCC
Q 011131 178 NSTIYQILQFLKNTKSFYMLNAYPYYGYTNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEGLNF 257 (493)
Q Consensus 178 ~~~l~~ll~fL~~~~d~~~vNiyPyf~~~~~~~~i~l~~Alf~~~~~~~g~~d~~~~~~y~n~fda~~Dav~~a~~k~g~ 257 (493)
+....|+++.|.|+=|-. +.... + .....++..++.. .++ +
T Consensus 460 ----------~~~~~Dv~~~N~Y~~wy~--~~~~~-----------------~-----~~~~~~~~~~~~~---~~~--~ 500 (604)
T PRK10150 460 ----------VSDLVDVLCLNRYYGWYV--DSGDL-----------------E-----TAEKVLEKELLAW---QEK--L 500 (604)
T ss_pred ----------ccCcccEEEEcccceecC--CCCCH-----------------H-----HHHHHHHHHHHHH---HHh--c
Confidence 133468889998753221 11100 0 0011222222211 111 2
Q ss_pred CCCcEEEeeccCCCCCC----CCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEecCCCCCCCC--CCCce
Q 011131 258 SGIPVIVTESGWPWLGG----GNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFNEDKRPGP--ISEKN 331 (493)
Q Consensus 258 ~~~~ivVsETGWPS~G~----~~~~~As~~na~~y~~~lv~~~~s~~GTP~rpg~~~~~y~F~~FDE~wK~G~--~~E~~ 331 (493)
++|++++|.|+.+.-+ .+. .-+.+.|..|++...+.+.+. |. -+-.|+..+||-....|. ....+
T Consensus 501 -~kP~~isEyg~~~~~~~h~~~~~-~~~ee~q~~~~~~~~~~~~~~------p~-~~G~~iW~~~D~~~~~g~~~~~g~~ 571 (604)
T PRK10150 501 -HKPIIITEYGADTLAGLHSMYDD-MWSEEYQCAFLDMYHRVFDRV------PA-VVGEQVWNFADFATSQGILRVGGNK 571 (604)
T ss_pred -CCCEEEEccCCccccccccCCCC-CCCHHHHHHHHHHHHHHHhcC------Cc-eEEEEEEeeeccCCCCCCcccCCCc
Confidence 7999999999766321 111 146788888888777766532 33 345899999996554331 12357
Q ss_pred eeeecCCCceeeec
Q 011131 332 WGVFFTNGTSVYPL 345 (493)
Q Consensus 332 wGlf~~d~~~ky~l 345 (493)
.||++.||+||-..
T Consensus 572 ~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 572 KGIFTRDRQPKSAA 585 (604)
T ss_pred ceeEcCCCCChHHH
Confidence 89999999998654
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.19 E-value=0.00021 Score=70.65 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=83.5
Q ss_pred cceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccC-------------Ch-------HHHHHHhhCCCeEEEEecCcc
Q 011131 24 AYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDA-------------DS-------HMLKALSKSGIEVIVGVLNEE 83 (493)
Q Consensus 24 ~~~GVnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~-------------d~-------~vL~A~a~~gi~V~lGv~n~~ 83 (493)
...|+|-. ..+.. ..+++++.+++.|++.|||.-. +. .+|+++++.||+|+|.+....
T Consensus 9 ~~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 9 NWRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred Eeeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 34566655 22112 7789999999999999999721 11 578899999999999998740
Q ss_pred ----hhhhcccHHHHHHHHHH---hh-cccCCCceEEEEEeccccccCCCC------CHHHHHHHHHHHHHHHHhCCCCC
Q 011131 84 ----VLGIGESASAAAGWINK---NV-AAYMPTTNITAIAVGSQVLTSIPN------AASVLVSAMNNLHKALVASDLNF 149 (493)
Q Consensus 84 ----~~~la~~~~~a~~wv~~---~v-~~~~~~~~I~~I~VGNEvl~~~~~------~~~~Lv~am~~v~~aL~~~gl~~ 149 (493)
............+|+++ .+ ..|.....|.++=+.||+...... ....+.+.++.+.+++++.+-..
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 11111122223333322 23 333244568899999999876432 23678899999999999998765
Q ss_pred ceEEe
Q 011131 150 QVKIS 154 (493)
Q Consensus 150 ~IkVs 154 (493)
.|-|+
T Consensus 167 ~i~~~ 171 (281)
T PF00150_consen 167 LIIVG 171 (281)
T ss_dssp EEEEE
T ss_pred eeecC
Confidence 34333
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.49 E-value=0.013 Score=58.37 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=53.6
Q ss_pred HHHHHHhcCCCCCcEEEeeccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEecCC-CCCCCC
Q 011131 248 TYYSIEGLNFSGIPVIVTESGWPWLGGGNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFNE-DKRPGP 326 (493)
Q Consensus 248 v~~a~~k~g~~~~~ivVsETGWPS~G~~~~~~As~~na~~y~~~lv~~~~s~~GTP~rpg~~~~~y~F~~FDE-~wK~G~ 326 (493)
+.+.|++++-.+++|.|||.+-|..+ +.+.|+.+++++++.+.+. | . ...+++..+.|. .|.++
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~- 235 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG- 235 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC-
Confidence 33444444444799999999988642 3478889999999988764 2 1 233555555553 45443
Q ss_pred CCCceeeeecCCCceeeec
Q 011131 327 ISEKNWGVFFTNGTSVYPL 345 (493)
Q Consensus 327 ~~E~~wGlf~~d~~~ky~l 345 (493)
.+-|||+.|++||-..
T Consensus 236 ---~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 236 ---GAPLLFDANYQPKPAY 251 (254)
T ss_pred ---CCceeECCCCCCChhh
Confidence 4679999999888543
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=97.12 E-value=0.073 Score=57.30 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCCEEEEcc------------CCh-------HHHHHHhhCCCeEEEEecCcch
Q 011131 40 ASDIVAILRANQITHVRLYD------------ADS-------HMLKALSKSGIEVIVGVLNEEV 84 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRiY~------------~d~-------~vL~A~a~~gi~V~lGv~n~~~ 84 (493)
-++++++|+++|++++|+=- .|. +++..+.+.||+++|.+.--++
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~ 119 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDL 119 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCc
Confidence 47899999999999998621 131 6889999999999999964333
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.05 E-value=0.036 Score=56.30 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=69.1
Q ss_pred ceeEEecCCCCCC---CCH---HHHHHHHHhCCCCEEEEcc--CChHHHHHHhhCCCeEEEEecCcch---hhh------
Q 011131 25 YVGVNIGTDVSNM---PSA---SDIVAILRANQITHVRLYD--ADSHMLKALSKSGIEVIVGVLNEEV---LGI------ 87 (493)
Q Consensus 25 ~~GVnYg~~~~nl---ps~---~~vv~llk~~~i~~VRiY~--~d~~vL~A~a~~gi~V~lGv~n~~~---~~l------ 87 (493)
..|||+......+ ++. .++++++|+.|++.||+.. .++..+.++-..||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 4699988654332 333 3457789999999999964 4679999999999999988876211 000
Q ss_pred ccc---HHHHHHHHHHhhcccCCCceEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEeccc
Q 011131 88 GES---ASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPH 157 (493)
Q Consensus 88 a~~---~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~ 157 (493)
..+ .+.+.+.+++.|..+.-...|..=.+|||. .....++.+.+.+++.--++ +|+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptR--pv~~~~ 158 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTR--PVTYAS 158 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTS--EEEEET
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCC--ceeecc
Confidence 011 223334456666665544568899999998 22333444555554443333 565543
No 13
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.99 E-value=0.043 Score=54.40 Aligned_cols=190 Identities=14% Similarity=0.114 Sum_probs=105.1
Q ss_pred CeEEEEecCcchhhhcccHHHHHHHHHHhhcccCCCceEEEEEeccccccCC--CCCHHHHHHHHHHHHHHHHhCCCCCc
Q 011131 73 IEVIVGVLNEEVLGIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSI--PNAASVLVSAMNNLHKALVASDLNFQ 150 (493)
Q Consensus 73 i~V~lGv~n~~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~--~~~~~~Lv~am~~v~~aL~~~gl~~~ 150 (493)
++-+-.+|.....+ ..|+. +|... ...++.|..=||+=... ..++++.+...+++.+.|+. . .
T Consensus 39 ~efvPmlwg~~~~~--------~~~~~-~v~~~--~~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~---~-~ 103 (239)
T PF11790_consen 39 LEFVPMLWGPGSDD--------DDWLA-NVQNA--HPGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS---P-G 103 (239)
T ss_pred eeEeecccCCCCCc--------hHHHH-HHHhh--ccCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc---C-C
Confidence 67777777643221 12222 22222 34678899999997654 34577777777777776663 2 3
Q ss_pred eEEeccccCccccCCCCCCccccccchhHHHHHHHHHHH--hcCCcccccccCCccccCCCCccccccccccCCCCCCce
Q 011131 151 VKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLK--NTKSFYMLNAYPYYGYTNGNGIFPIDYALFRPMPSVKQI 228 (493)
Q Consensus 151 IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~--~~~d~~~vNiyPyf~~~~~~~~i~l~~Alf~~~~~~~g~ 228 (493)
+|++.+.....-. .+|+.. +-|...++-.. +..|++.||.| . .+.
T Consensus 104 ~~l~sPa~~~~~~--~~~~g~-------~Wl~~F~~~~~~~~~~D~iavH~Y---~--~~~------------------- 150 (239)
T PF11790_consen 104 VKLGSPAVAFTNG--GTPGGL-------DWLSQFLSACARGCRVDFIAVHWY---G--GDA------------------- 150 (239)
T ss_pred cEEECCeecccCC--CCCCcc-------HHHHHHHHhcccCCCccEEEEecC---C--cCH-------------------
Confidence 7777664311100 011111 22333333222 35677777666 1 000
Q ss_pred ecCCCCcccccHHHHHHHHHHHHHHhcCCCCCcEEEeeccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 011131 229 VDPNTLFHYNSMFDAMVDATYYSIEGLNFSGIPVIVTESGWPWLGGGNETDATLENAETYNNNMIRRVLNDTGPPSQPDM 308 (493)
Q Consensus 229 ~d~~~~~~y~n~fda~~Dav~~a~~k~g~~~~~ivVsETGWPS~G~~~~~~As~~na~~y~~~lv~~~~s~~GTP~rpg~ 308 (493)
.-|...++. ..++.| +||+|||.|+...+. ..+.+.++.|++..+..+.+. |.
T Consensus 151 ----------~~~~~~i~~---~~~~~~---kPIWITEf~~~~~~~----~~~~~~~~~fl~~~~~~ld~~------~~- 203 (239)
T PF11790_consen 151 ----------DDFKDYIDD---LHNRYG---KPIWITEFGCWNGGS----QGSDEQQASFLRQALPWLDSQ------PY- 203 (239)
T ss_pred ----------HHHHHHHHH---HHHHhC---CCEEEEeecccCCCC----CCCHHHHHHHHHHHHHHHhcC------CC-
Confidence 012222333 334443 899999999876222 377889999999999998643 22
Q ss_pred cceEEEEEecCCCCCCCCCCCceeeeecCCCce
Q 011131 309 PINTYVYELFNEDKRPGPISEKNWGVFFTNGTS 341 (493)
Q Consensus 309 ~~~~y~F~~FDE~wK~G~~~E~~wGlf~~d~~~ 341 (493)
--.++||. |-..+. .+..+-.|++.+|++
T Consensus 204 VeryawF~-~~~~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 204 VERYAWFG-FMNDGS---GVNPNSALLDADGSL 232 (239)
T ss_pred eeEEEecc-cccccC---CCccccccccCCCCc
Confidence 23477787 322222 235556777777744
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.13 E-value=0.015 Score=62.94 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCCCEEEEcc-------------CCh-------HHHHHHhhCCCeEEEEecCcchhhhc------ccHHH
Q 011131 40 ASDIVAILRANQITHVRLYD-------------ADS-------HMLKALSKSGIEVIVGVLNEEVLGIG------ESASA 93 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRiY~-------------~d~-------~vL~A~a~~gi~V~lGv~n~~~~~la------~~~~~ 93 (493)
-++++++||++|++..|+== .|+ +++..|...||+.+|.+.--+++..- .+...
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 48899999999999998741 122 68999999999999999865444311 11121
Q ss_pred HH---HHHHHhhcccCCCceEEEEEeccccccC-------C---C--CC-------HHHHHHHHHHHHHHHHhCCCCCce
Q 011131 94 AA---GWINKNVAAYMPTTNITAIAVGSQVLTS-------I---P--NA-------ASVLVSAMNNLHKALVASDLNFQV 151 (493)
Q Consensus 94 a~---~wv~~~v~~~~~~~~I~~I~VGNEvl~~-------~---~--~~-------~~~Lv~am~~v~~aL~~~gl~~~I 151 (493)
++ +..+.-+..+ .+.|+.-+.=||...- + + .. .-.++-|-..+.+++++.... -
T Consensus 140 ~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~--~ 215 (455)
T PF00232_consen 140 VDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD--G 215 (455)
T ss_dssp HHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--S
T ss_pred HHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--e
Confidence 11 1122222333 3568888888998541 1 0 11 223555555566666665543 4
Q ss_pred EEeccccCc
Q 011131 152 KISTPHSMD 160 (493)
Q Consensus 152 kVsTa~~~~ 160 (493)
+|+.+++..
T Consensus 216 ~IGi~~~~~ 224 (455)
T PF00232_consen 216 KIGIALNFS 224 (455)
T ss_dssp EEEEEEEEE
T ss_pred EEecccccc
Confidence 666665543
No 15
>PLN02998 beta-glucosidase
Probab=95.21 E-value=2.2 Score=46.95 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCEEEEc-------c-----CCh-------HHHHHHhhCCCeEEEEecCcchh
Q 011131 40 ASDIVAILRANQITHVRLY-------D-----ADS-------HMLKALSKSGIEVIVGVLNEEVL 85 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRiY-------~-----~d~-------~vL~A~a~~gi~V~lGv~n~~~~ 85 (493)
-+|+++++|++|++.-|+= = .|+ +++.+|.+.||+-+|.++--+++
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP 148 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLP 148 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 3789999999999888752 1 232 68999999999999999865554
No 16
>PLN02814 beta-glucosidase
Probab=95.20 E-value=2.2 Score=47.04 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCEEEE-------cc-----CCh-------HHHHHHhhCCCeEEEEecCcchhh
Q 011131 40 ASDIVAILRANQITHVRL-------YD-----ADS-------HMLKALSKSGIEVIVGVLNEEVLG 86 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRi-------Y~-----~d~-------~vL~A~a~~gi~V~lGv~n~~~~~ 86 (493)
-+|+++++|++|++.-|. += .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 478999999999888774 21 132 689999999999999998655543
No 17
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.87 E-value=1.3 Score=53.06 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=59.6
Q ss_pred eeEEecCCCCC---CCCH---HHHHHHHHhCCCCEEEEcc--CChHHHHHHhhCCCeEEEEecCcch--------hhhcc
Q 011131 26 VGVNIGTDVSN---MPSA---SDIVAILRANQITHVRLYD--ADSHMLKALSKSGIEVIVGVLNEEV--------LGIGE 89 (493)
Q Consensus 26 ~GVnYg~~~~n---lps~---~~vv~llk~~~i~~VRiY~--~d~~vL~A~a~~gi~V~lGv~n~~~--------~~la~ 89 (493)
.|+|+-..... -.++ .++++++|+.|++.||+-- .++..+.++-..||-|+--++.... ..+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 58886433221 1233 4567899999999999853 3568899999999999886532110 01112
Q ss_pred cH---HHHHHHHHHhhcccCCCceEEEEEeccccc
Q 011131 90 SA---SAAAGWINKNVAAYMPTTNITAIAVGSQVL 121 (493)
Q Consensus 90 ~~---~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl 121 (493)
++ ++..+-+++.|....-...|..-++|||.-
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 22 111233555565554445788999999974
No 18
>PLN02849 beta-glucosidase
Probab=94.42 E-value=5.7 Score=43.84 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCCEEEE-------cc-----CCh-------HHHHHHhhCCCeEEEEecCcchhh
Q 011131 40 ASDIVAILRANQITHVRL-------YD-----ADS-------HMLKALSKSGIEVIVGVLNEEVLG 86 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRi-------Y~-----~d~-------~vL~A~a~~gi~V~lGv~n~~~~~ 86 (493)
-+|+++|||++|++.-|. +- .|+ +++.++.+.||+-+|.+.--+++.
T Consensus 81 Y~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~ 146 (503)
T PLN02849 81 YKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQ 146 (503)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcH
Confidence 478999999999888774 21 132 689999999999999998655543
No 19
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=93.98 E-value=9.5 Score=41.70 Aligned_cols=47 Identities=9% Similarity=0.144 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCCEEEEc---------c---CCh-------HHHHHHhhCCCeEEEEecCcchhh
Q 011131 40 ASDIVAILRANQITHVRLY---------D---ADS-------HMLKALSKSGIEVIVGVLNEEVLG 86 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRiY---------~---~d~-------~vL~A~a~~gi~V~lGv~n~~~~~ 86 (493)
-+|+++|||++|++.-|.= + .|+ +++.+|.+.||+-+|.++--+++.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 5899999999999888752 1 132 689999999999999998655543
No 20
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=92.07 E-value=22 Score=39.07 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCEEEE-------cc------CCh-------HHHHHHhhCCCeEEEEecCcchhh
Q 011131 40 ASDIVAILRANQITHVRL-------YD------ADS-------HMLKALSKSGIEVIVGVLNEEVLG 86 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRi-------Y~------~d~-------~vL~A~a~~gi~V~lGv~n~~~~~ 86 (493)
-+++++|||++|++.-|. += .|+ +++.+|.+.||+-+|.++--+++.
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 588999999999988875 21 132 688999999999999998655543
No 21
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=89.45 E-value=37 Score=37.28 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCEEEE-------cc------CCh-------HHHHHHhhCCCeEEEEecCcchh
Q 011131 40 ASDIVAILRANQITHVRL-------YD------ADS-------HMLKALSKSGIEVIVGVLNEEVL 85 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRi-------Y~------~d~-------~vL~A~a~~gi~V~lGv~n~~~~ 85 (493)
-+++++|||++|++..|+ +- .|+ +++.+|.+.||+.+|.++=-+++
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 589999999999887764 21 132 68999999999999999644443
No 22
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=88.99 E-value=40 Score=37.02 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCEEEE-------cc------CCh-------HHHHHHhhCCCeEEEEecCcchhh
Q 011131 40 ASDIVAILRANQITHVRL-------YD------ADS-------HMLKALSKSGIEVIVGVLNEEVLG 86 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRi-------Y~------~d~-------~vL~A~a~~gi~V~lGv~n~~~~~ 86 (493)
-++++++|+++|++..|+ +- .|+ +++.++.+.||+.+|.+.--+++.
T Consensus 73 y~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 73 YKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred hHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 488999999999888775 21 132 689999999999999998765553
No 23
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=87.31 E-value=5.3 Score=41.99 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=54.0
Q ss_pred HHHHHHHHHhCCCCEEEEccC------------C----hHHHHHHhhCCCeEEEEecCcchh--------hh--------
Q 011131 40 ASDIVAILRANQITHVRLYDA------------D----SHMLKALSKSGIEVIVGVLNEEVL--------GI-------- 87 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRiY~~------------d----~~vL~A~a~~gi~V~lGv~n~~~~--------~l-------- 87 (493)
-+++++++|+.|++.|||-.. | -.+|..+++.||+|+|+++....+ .+
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 478899999999999998432 1 168888999999999999742111 00
Q ss_pred ----------c-cc---HHHHHHHHHHhhcccCCCceEEEEEecccccc
Q 011131 88 ----------G-ES---ASAAAGWINKNVAAYMPTTNITAIAVGSQVLT 122 (493)
Q Consensus 88 ----------a-~~---~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~ 122 (493)
. .+ .+.+.+.+++.+..|-....|.++.|.||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0 01 13344555555555654567999999999866
No 24
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=86.59 E-value=54 Score=35.88 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCEEEE-------cc-----CCh-------HHHHHHhhCCCeEEEEecCcchhh
Q 011131 40 ASDIVAILRANQITHVRL-------YD-----ADS-------HMLKALSKSGIEVIVGVLNEEVLG 86 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRi-------Y~-----~d~-------~vL~A~a~~gi~V~lGv~n~~~~~ 86 (493)
-+++++|||++|++.-|+ += .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 588999999999887775 21 132 688999999999999999765543
No 25
>PRK09936 hypothetical protein; Provisional
Probab=84.16 E-value=8.3 Score=39.52 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=47.2
Q ss_pred HHHHHhhhcccccceeEEecCCCCCC-CCHH---HHHHHHHhCCCCEEEE-c----cCC--------hHHHHHHhhCCCe
Q 011131 12 FLAIGLFTNVLGAYVGVNIGTDVSNM-PSAS---DIVAILRANQITHVRL-Y----DAD--------SHMLKALSKSGIE 74 (493)
Q Consensus 12 ~~~~~~~~~~~~~~~GVnYg~~~~nl-ps~~---~vv~llk~~~i~~VRi-Y----~~d--------~~vL~A~a~~gi~ 74 (493)
+|++++++...-+--|+=|-|...+. -+++ +..+.++..|++.+=+ | +.| .+.|+++.+.||+
T Consensus 8 ~l~~l~~~~~~~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~ 87 (296)
T PRK09936 8 LLTLLLVSPFSQAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLK 87 (296)
T ss_pred HHHHHHcCchhhccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCE
Confidence 33334443322234677799997763 3444 4566777889976644 2 222 3788888999999
Q ss_pred EEEEecCcc
Q 011131 75 VIVGVLNEE 83 (493)
Q Consensus 75 V~lGv~n~~ 83 (493)
|.||++-|.
T Consensus 88 v~vGL~~Dp 96 (296)
T PRK09936 88 LVVGLYADP 96 (296)
T ss_pred EEEcccCCh
Confidence 999999864
No 26
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=83.95 E-value=52 Score=36.04 Aligned_cols=249 Identities=14% Similarity=0.182 Sum_probs=112.2
Q ss_pred HHHHhCCCCEEEEccC--C---------------------hHHHHHHhhCCCeEEEEecC--cchhh-----h-------
Q 011131 45 AILRANQITHVRLYDA--D---------------------SHMLKALSKSGIEVIVGVLN--EEVLG-----I------- 87 (493)
Q Consensus 45 ~llk~~~i~~VRiY~~--d---------------------~~vL~A~a~~gi~V~lGv~n--~~~~~-----l------- 87 (493)
.+.+..||+.||+... | -.++..+.+.||+-+|-+-- ..+.+ +
T Consensus 47 ~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~~ 126 (486)
T PF01229_consen 47 ELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNIS 126 (486)
T ss_dssp HHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-S
T ss_pred HHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCcC
Confidence 3334679999999843 1 15888899999997665542 11100 0
Q ss_pred -cccHHHH----HHHHHHhhcccCCCceEE--EEEeccccccCC---CCCHHHHHHHHHHHHHHHHhCCCCCceEEeccc
Q 011131 88 -GESASAA----AGWINKNVAAYMPTTNIT--AIAVGSQVLTSI---PNAASVLVSAMNNLHKALVASDLNFQVKISTPH 157 (493)
Q Consensus 88 -a~~~~~a----~~wv~~~v~~~~~~~~I~--~I~VGNEvl~~~---~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~ 157 (493)
..+...- .++++.-+..| +...|+ ..=|=||+=... ..+..+-....+.+.++|++..- .+||+-+-
T Consensus 127 pp~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p--~~~vGGp~ 203 (486)
T PF01229_consen 127 PPKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDP--ELKVGGPA 203 (486)
T ss_dssp -BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-T--TSEEEEEE
T ss_pred CcccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCC--CCcccCcc
Confidence 0111211 22233333333 111111 456789864432 23345566777777788877643 47888761
Q ss_pred cCccccCCCCCCccccccchhHHHHHHHHHHHhc---CCcccccccCCccccCCCCccccccccccCCCCCCceecCCCC
Q 011131 158 SMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNT---KSFYMLNAYPYYGYTNGNGIFPIDYALFRPMPSVKQIVDPNTL 234 (493)
Q Consensus 158 ~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~~~---~d~~~vNiyPyf~~~~~~~~i~l~~Alf~~~~~~~g~~d~~~~ 234 (493)
.. + + ....+...++|+.+. -||+..|.||+-....... .....-.
T Consensus 204 ~~--~--~-----------~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~----------------~~~~~~~- 251 (486)
T PF01229_consen 204 FA--W--A-----------YDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINE----------------NMYERIE- 251 (486)
T ss_dssp EE--T--T------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-----------------EEEEB--
T ss_pred cc--c--c-----------HHHHHHHHHHHHhcCCCCCCEEEEEecccccccccch----------------hHHhhhh-
Confidence 10 0 0 012356667777653 4888888887533211100 0000000
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCcEEEeeccCCCCCCCCCC-CCChHHHHHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 011131 235 FHYNSMFDAMVDATYYSIEGLNFSGIPVIVTESGWPWLGGGNET-DATLENAETYNNNMIRRVLNDTGPPSQPDMPINTY 313 (493)
Q Consensus 235 ~~y~n~fda~~Dav~~a~~k~g~~~~~ivVsETGWPS~G~~~~~-~As~~na~~y~~~lv~~~~s~~GTP~rpg~~~~~y 313 (493)
....+++. +.-+...+...+++++++.++| |.+.-..... --|.-+|+-..+++++.... .++.|
T Consensus 252 -~~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~ 317 (486)
T PF01229_consen 252 -DSRRLFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSF 317 (486)
T ss_dssp --HHHHHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEE
T ss_pred -hHHHHHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhh
Confidence 01112222 2223334555678899999999 8765443211 13455555555556665532 12322
Q ss_pred E---E-EecCCCCCCCCCCCceeeeecCCCcee
Q 011131 314 V---Y-ELFNEDKRPGPISEKNWGVFFTNGTSV 342 (493)
Q Consensus 314 ~---F-~~FDE~wK~G~~~E~~wGlf~~d~~~k 342 (493)
- | ..|.|+--+....-.-|||++.+|-+|
T Consensus 318 sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 318 SYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp EES-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred hccchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 1 1 134333222223445599999998666
No 27
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=82.69 E-value=81 Score=34.65 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCEEEE-------cc------CCh-------HHHHHHhhCCCeEEEEecCcchh
Q 011131 40 ASDIVAILRANQITHVRL-------YD------ADS-------HMLKALSKSGIEVIVGVLNEEVL 85 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRi-------Y~------~d~-------~vL~A~a~~gi~V~lGv~n~~~~ 85 (493)
-++++++||++|++.-|+ += .|+ +++..|.+.||+-+|.++--+++
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 588999999999888774 31 232 68999999999999999866554
No 28
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=80.51 E-value=16 Score=38.36 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=75.5
Q ss_pred CCCEEEEccC-ChHHHHHHhhCCCeEEEEecCcchhhhcccHHHHHHHHHHhhcccCCCceEEEEEeccccccC-CCCCH
Q 011131 51 QITHVRLYDA-DSHMLKALSKSGIEVIVGVLNEEVLGIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTS-IPNAA 128 (493)
Q Consensus 51 ~i~~VRiY~~-d~~vL~A~a~~gi~V~lGv~n~~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~-~~~~~ 128 (493)
.+++|-+|+. |+.++..+.+.|++|++..-.. .+.+ ++++.-.+++++.| .+...-...+|-+==|-... +....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 4788998864 7899999999999999864322 2223 34444444544433 22211234555554443322 12235
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCccccc-cchhHHHHHHHHHHHhcCCcccccccCCc
Q 011131 129 SVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATFN-SAWNSTIYQILQFLKNTKSFYMLNAYPYY 203 (493)
Q Consensus 129 ~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g~F~-~~~~~~l~~ll~fL~~~~d~~~vNiyPyf 203 (493)
..+..-|+.+|++|++.+.... |+.+..+. |+....+ -|+ . -|++..|++.+-.|=|.
T Consensus 132 ~~~t~llkelr~~l~~~~~~~~--Lsvav~~~-------p~~~~~~~yd~----~----~l~~~vD~v~lMtYD~h 190 (358)
T cd02875 132 YALTELVKETTKAFKKENPGYQ--ISFDVAWS-------PSCIDKRCYDY----T----GIADASDFLVVMDYDEQ 190 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCCcE--EEEEEecC-------cccccccccCH----H----HHHhhCCEeeEEeeccc
Confidence 6788999999999998765432 44332221 1111111 122 2 24667789999888654
No 29
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=73.84 E-value=15 Score=40.26 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=61.6
Q ss_pred HHHHHHhhcccCCCceEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCccccc
Q 011131 95 AGWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATFN 174 (493)
Q Consensus 95 ~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g~F~ 174 (493)
...|..-|.+|--...|.+-..-||.+.+.+.....++...+.+.+.++..+-+.-|.|+ +...-|..--|| .+.|
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvG--D~~sp~~~~~py-N~r~- 198 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVG--DPASPWPQYAPY-NARF- 198 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecC--CcCCcccccCCc-ccce-
Confidence 456777777775566788888889988777778888999999999999887765534444 433323322222 2222
Q ss_pred cchhHHHHHHHHHHHhcCCcccccccCCccc
Q 011131 175 SAWNSTIYQILQFLKNTKSFYMLNAYPYYGY 205 (493)
Q Consensus 175 ~~~~~~l~~ll~fL~~~~d~~~vNiyPyf~~ 205 (493)
+.||-.-++||+|..
T Consensus 199 ----------------~vDya~~hLY~hyd~ 213 (587)
T COG3934 199 ----------------YVDYAANHLYRHYDT 213 (587)
T ss_pred ----------------eeccccchhhhhccC
Confidence 457778899997663
No 30
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=72.50 E-value=24 Score=42.45 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=61.0
Q ss_pred ceeEEecCCCCC---CCCH---HHHHHHHHhCCCCEEEEcc--CChHHHHHHhhCCCeEEEEecCcch-----hhhcccH
Q 011131 25 YVGVNIGTDVSN---MPSA---SDIVAILRANQITHVRLYD--ADSHMLKALSKSGIEVIVGVLNEEV-----LGIGESA 91 (493)
Q Consensus 25 ~~GVnYg~~~~n---lps~---~~vv~llk~~~i~~VRiY~--~d~~vL~A~a~~gi~V~lGv~n~~~-----~~la~~~ 91 (493)
..|+|+-..... -.++ .++++++|+.|++.||+-- .++..+..+-..||-|+--++.... ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 358887543221 2344 4467889999999999943 3678999999999999987654210 1111122
Q ss_pred ---HHHHHHHHHhhcccCCCceEEEEEeccccc
Q 011131 92 ---SAAAGWINKNVAAYMPTTNITAIAVGSQVL 121 (493)
Q Consensus 92 ---~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl 121 (493)
++..+-+++.|....-...|..-++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 122223445555554445799999999963
No 31
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=71.90 E-value=53 Score=30.78 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=55.9
Q ss_pred HHHHHHHHhCCCCEEEE----------ccC------------C--hHHHHHHhhCCCeEEEEecCcc-hhhhcccHHHHH
Q 011131 41 SDIVAILRANQITHVRL----------YDA------------D--SHMLKALSKSGIEVIVGVLNEE-VLGIGESASAAA 95 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRi----------Y~~------------d--~~vL~A~a~~gi~V~lGv~n~~-~~~la~~~~~a~ 95 (493)
++.++.||+.||+.|=+ |.+ | ..+|+++.+.||||++|++-+. --. ..+.+...
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~~ 101 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD-QGDLDWEA 101 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHHH
Confidence 45678889999987722 111 1 2688999999999999999642 111 11111110
Q ss_pred ---HHHHHhh-cccCCCceEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhC
Q 011131 96 ---GWINKNV-AAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVAS 145 (493)
Q Consensus 96 ---~wv~~~v-~~~~~~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~ 145 (493)
.-+.+.+ ..|.....+.+--+-.|+=... ....++.+.+.+.|++.
T Consensus 102 ~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 102 ERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHHHHHHHHHh
Confidence 1122222 2332234577777777775433 22355556666666654
No 32
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=70.17 E-value=15 Score=38.20 Aligned_cols=177 Identities=17% Similarity=0.231 Sum_probs=69.5
Q ss_pred HHHHHhhCCCeEEEEecCcchhhhcccHHHHHHHHHHhhcccCC-----CceEEEEEeccccccCC---CCCHHHHHHHH
Q 011131 64 MLKALSKSGIEVIVGVLNEEVLGIGESASAAAGWINKNVAAYMP-----TTNITAIAVGSQVLTSI---PNAASVLVSAM 135 (493)
Q Consensus 64 vL~A~a~~gi~V~lGv~n~~~~~la~~~~~a~~wv~~~v~~~~~-----~~~I~~I~VGNEvl~~~---~~~~~~Lv~am 135 (493)
+-+-+..+|++|+.|+.--.-..........-.|--+|...++. .=+|.+-=.|||.-..+ ..++.++....
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 33445579999999997321111001113345787777544432 12577788899975433 24578888888
Q ss_pred HHHHHHHHhC---CCCCceEEeccccCccccCCCCCCccccccchhHHHHHHHHHHHh-cCCcccccccCCccccCCCCc
Q 011131 136 NNLHKALVAS---DLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKN-TKSFYMLNAYPYYGYTNGNGI 211 (493)
Q Consensus 136 ~~v~~aL~~~---gl~~~IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~~-~~d~~~vNiyPyf~~~~~~~~ 211 (493)
..+|+.|++. .+.+ -+|.-+.. .|..++ +++.|+-... ..|.+.-|.|+ +....++.
T Consensus 194 ~~Lr~il~~iy~~~~~~-P~v~gP~~-------------~~d~~w---~~~FL~~~g~~~vD~vT~H~Y~-lg~g~d~~- 254 (319)
T PF03662_consen 194 IQLRKILNEIYKNALPG-PLVVGPGG-------------FFDADW---LKEFLKASGPGVVDAVTWHHYN-LGSGRDPA- 254 (319)
T ss_dssp ---HHHHHHHHHH-TT----EEEEEE-------------SS-GGG---HHHHHHHTTTT--SEEEEEEEE-E--TT-TT-
T ss_pred HHHHHHHHHHHhcCCCC-CeEECCCC-------------CCCHHH---HHHHHHhcCCCccCEEEEEecC-CCCCchHH-
Confidence 8888888763 0111 12433321 223333 3444443334 36888888884 33222221
Q ss_pred cccccccccCCCCCCceecCCCCcccccHHHHHHHHHHHHHHhcCCCCCcEEEeeccCCCCCCCC
Q 011131 212 FPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEGLNFSGIPVIVTESGWPWLGGGN 276 (493)
Q Consensus 212 i~l~~Alf~~~~~~~g~~d~~~~~~y~n~fda~~Dav~~a~~k~g~~~~~ivVsETGWPS~G~~~ 276 (493)
+...+. ++ .|-+-+..++..+...+++.+ ++++++|+|||=...|+..
T Consensus 255 --l~~~~l----------~p----~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG~~ 302 (319)
T PF03662_consen 255 --LIEDFL----------NP----SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGGAP 302 (319)
T ss_dssp ---HHHHT----------S------HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT--T
T ss_pred --HHHHhc----------Ch----hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCCCC
Confidence 100111 11 121222233333433334333 6799999999966656543
No 33
>PLN03059 beta-galactosidase; Provisional
Probab=63.76 E-value=1.2e+02 Score=35.63 Aligned_cols=116 Identities=11% Similarity=0.045 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCCCEEEEccC-----------C-------hHHHHHHhhCCCeEEEEe---------------cCcchhh-
Q 011131 41 SDIVAILRANQITHVRLYDA-----------D-------SHMLKALSKSGIEVIVGV---------------LNEEVLG- 86 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRiY~~-----------d-------~~vL~A~a~~gi~V~lGv---------------~n~~~~~- 86 (493)
.+.++.+|+.|++.|-+|-. | ..-|+.+++.|+.|+|=. |.-..+.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i 141 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGI 141 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCc
Confidence 35678889999999999943 1 246778889999998843 2111111
Q ss_pred -hcc-c---HHHHHHHHHHhhcc-----c-C-CCceEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEe
Q 011131 87 -IGE-S---ASAAAGWINKNVAA-----Y-M-PTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKIS 154 (493)
Q Consensus 87 -la~-~---~~~a~~wv~~~v~~-----~-~-~~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVs 154 (493)
+.+ + .++.++|+..-+.. + + ....|..+=|-||.=.-....-..=..+|+.+++.++++|+. ||.-
T Consensus 142 ~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~ 219 (840)
T PLN03059 142 EFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTG--VPWV 219 (840)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCC--cceE
Confidence 111 2 24556676544321 1 1 135799999999953210000012267999999999999984 7776
Q ss_pred cccc
Q 011131 155 TPHS 158 (493)
Q Consensus 155 Ta~~ 158 (493)
|.+.
T Consensus 220 t~dg 223 (840)
T PLN03059 220 MCKQ 223 (840)
T ss_pred ECCC
Confidence 6654
No 34
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=63.73 E-value=62 Score=32.37 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHhhhcccccceeEEecCCCCCCC--CHHHHHHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEecCc
Q 011131 5 KWLGSVVFLAIGLFTNVLGAYVGVNIGTDVSNMP--SASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNE 82 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~GVnYg~~~~nlp--s~~~vv~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~n~ 82 (493)
++..+.++++++++++|.... -..++ .+.|++.+|.++||+.-|.=+ ++.|. .+-|..+
T Consensus 4 ~~~~l~~l~l~l~L~gCk~~L--------y~gL~e~eANemlAlL~~~gI~A~K~~~---------~~g~~--~l~Ve~~ 64 (246)
T COG4669 4 LRKYLFLLLLILLLTGCKVDL--------YTGLSEKEANEMLALLMSHGINAEKKAD---------KDGGT--SLLVEES 64 (246)
T ss_pred HHHHHHHHHHHHHHhcchHHH--------HcCCCHhHHHHHHHHHHHcCCcceeecc---------CCCce--EEEEcHH
Confidence 333445555555555554211 11233 467899999999999888811 22222 3444432
Q ss_pred chhhhcccHHHHHHHHHHhhcccCCCceEEEEEeccccccCCCCC-HHHHHHHHHHHHHHHHhC-C-CCCceEEeccccC
Q 011131 83 EVLGIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNA-ASVLVSAMNNLHKALVAS-D-LNFQVKISTPHSM 159 (493)
Q Consensus 83 ~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~-~~~Lv~am~~v~~aL~~~-g-l~~~IkVsTa~~~ 159 (493)
+..+|.+|++.+=.|.-+.+++.-++=.+--+...... +...-..=|++-+.|+.- | +..+|.|+-++.
T Consensus 65 -------~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR~~~~~eQ~le~tLs~mDGVi~ArV~I~lp~~- 136 (246)
T COG4669 65 -------DFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKARLNYAKEQQLEQTLSKMDGVISARVHISLPED- 136 (246)
T ss_pred -------HHHHHHHHHHhcCCCCCCCCcHHHhCCcccccCCcHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEEEcCCC-
Confidence 23567899998876665555554444444433322111 111112223444455442 2 233466666655
Q ss_pred ccccCC-CCCCcccc---ccch
Q 011131 160 DIIPRP-FPPSTATF---NSAW 177 (493)
Q Consensus 160 ~vl~~s-~pPs~g~F---~~~~ 177 (493)
+..... -|-|+..| ++|.
T Consensus 137 ~~~g~~~~P~saSVfIky~~~~ 158 (246)
T COG4669 137 DDEGKNALPSSASVFIKYSPDV 158 (246)
T ss_pred CccCCCCCCceeEEEEEecCCC
Confidence 444433 33344444 5565
No 35
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=62.72 E-value=11 Score=35.51 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=27.5
Q ss_pred HHHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 011131 43 IVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVL 80 (493)
Q Consensus 43 vv~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~ 80 (493)
-+|.|+.+|+++||+.+.+|.=+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36899999999999999999999999999999975544
No 36
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=61.08 E-value=31 Score=26.64 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEccCC-----hHHHHHHhhCCCeEEEEecC
Q 011131 38 PSASDIVAILRANQITHVRLYDAD-----SHMLKALSKSGIEVIVGVLN 81 (493)
Q Consensus 38 ps~~~vv~llk~~~i~~VRiY~~d-----~~vL~A~a~~gi~V~lGv~n 81 (493)
-++++.++..+++|++.|=+=|-+ ....+.+++.||+|+.|+-.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 468899999999999999887765 35666677899999999864
No 37
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.19 E-value=30 Score=36.66 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=38.5
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCcEEEeeccCCCCCCCCC---CCCChHHHHHHHHHHHHhhhcC
Q 011131 237 YNSMFDAMVDATYYSIEGLNFSGIPVIVTESGWPWLGGGNE---TDATLENAETYNNNMIRRVLND 299 (493)
Q Consensus 237 y~n~fda~~Dav~~a~~k~g~~~~~ivVsETGWPS~G~~~~---~~As~~na~~y~~~lv~~~~s~ 299 (493)
|.|-|++-+-.......-.|++..+|+.| |||.|.-.+ .-.|...++.-++++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 55666654433333334457778899887 999997532 1256666777777788877654
No 38
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=56.63 E-value=13 Score=37.89 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=54.0
Q ss_pred ceEEEEEecccccc----CCC----CCHHHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCcc----ccccc
Q 011131 109 TNITAIAVGSQVLT----SIP----NAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTA----TFNSA 176 (493)
Q Consensus 109 ~~I~~I~VGNEvl~----~~~----~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g----~F~~~ 176 (493)
..|..++||.|-.- |+. -.+..|...+.+||+.| | ..+|||.+-.|+.+.. +.|..| .|+-
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~-~~p~dg~gd~~f~L- 90 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFG-YQPADGSGDVYFHL- 90 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcC-cCCCCCCCcccccC-
Confidence 56899999999743 211 12567888888888886 3 3479999999988764 455554 4542
Q ss_pred hhHHHHHHHHHHHhcCCcccccccCCc
Q 011131 177 WNSTIYQILQFLKNTKSFYMLNAYPYY 203 (493)
Q Consensus 177 ~~~~l~~ll~fL~~~~d~~~vNiyPyf 203 (493)
.|+. -....|+++|+-|.=.
T Consensus 91 -----DpLW--a~~~IDfIGID~Y~PL 110 (299)
T PF13547_consen 91 -----DPLW--ADPNIDFIGIDNYFPL 110 (299)
T ss_pred -----cccc--cCCcCCEEEeeccccc
Confidence 2332 1346788899887433
No 39
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=56.35 E-value=19 Score=34.61 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=30.5
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHHhhCCCeEE
Q 011131 44 VAILRANQITHVRLYDADSHMLKALSKSGIEVI 76 (493)
Q Consensus 44 v~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~ 76 (493)
.|.|+.+|+++||+.+.++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998888889999999987
No 40
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=56.07 E-value=19 Score=34.77 Aligned_cols=33 Identities=27% Similarity=0.563 Sum_probs=30.7
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHHhhCCCeEE
Q 011131 44 VAILRANQITHVRLYDADSHMLKALSKSGIEVI 76 (493)
Q Consensus 44 v~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~ 76 (493)
+|.|+.+||++||+.+.++.=+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998878889999999997
No 41
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=53.31 E-value=75 Score=32.33 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=50.2
Q ss_pred ChHHHHHHhhCCCeEEEEecCcc--------hhhhcccHHHHHHHHHHhhcccCCCceEEEEEeccccccCCCCCHHHHH
Q 011131 61 DSHMLKALSKSGIEVIVGVLNEE--------VLGIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLV 132 (493)
Q Consensus 61 d~~vL~A~a~~gi~V~lGv~n~~--------~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~Lv 132 (493)
++.++.++++.|+||++.|.+.. ...+.++++.-...+ +++..+...-.+.+|-+-=|.+. .......+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~--~~d~~~~~ 123 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVP--PEDREAYT 123 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCC--HHHHHHHH
Confidence 35788888889999999887642 123444443323332 23332221113455655545542 22355688
Q ss_pred HHHHHHHHHHHhCCC
Q 011131 133 SAMNNLHKALVASDL 147 (493)
Q Consensus 133 ~am~~v~~aL~~~gl 147 (493)
.-|+.+|++|.+.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987764
No 42
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=49.69 E-value=77 Score=29.73 Aligned_cols=84 Identities=13% Similarity=0.273 Sum_probs=46.4
Q ss_pred HHHHHHhhC--CCeEEEEecCcchhh---hcccHHHHHHHHHHhhcccCCCceEEEEEeccccccCCC-CCHHHHHHHHH
Q 011131 63 HMLKALSKS--GIEVIVGVLNEEVLG---IGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIP-NAASVLVSAMN 136 (493)
Q Consensus 63 ~vL~A~a~~--gi~V~lGv~n~~~~~---la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~-~~~~~Lv~am~ 136 (493)
..++.+++. |+||++.|....... +..+.+..++.++ ++..+...-++.+|-+==|...... .....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 456666665 999999998643222 2444443333322 2222222224455555334332211 12578999999
Q ss_pred HHHHHHHhCCC
Q 011131 137 NLHKALVASDL 147 (493)
Q Consensus 137 ~v~~aL~~~gl 147 (493)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999977643
No 43
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=49.49 E-value=97 Score=32.19 Aligned_cols=80 Identities=11% Similarity=0.226 Sum_probs=42.5
Q ss_pred HHHhh--CCCeEEEEecC--c---chhhhcccHHHHHHHHHHhhcccCCCceEEEEEeccccccC---CCCCHHHHHHHH
Q 011131 66 KALSK--SGIEVIVGVLN--E---EVLGIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTS---IPNAASVLVSAM 135 (493)
Q Consensus 66 ~A~a~--~gi~V~lGv~n--~---~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~---~~~~~~~Lv~am 135 (493)
.++++ .++||++.|-. . ....+.++++....+++.. ..++..-.+.+|-+==|.... .......++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~i-v~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSA-IAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHH-HHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34454 58999988853 1 2334455544434443332 222211134455443333221 112356788999
Q ss_pred HHHHHHHHhCC
Q 011131 136 NNLHKALVASD 146 (493)
Q Consensus 136 ~~v~~aL~~~g 146 (493)
+.+|++|.+.+
T Consensus 141 ~~lr~~l~~~~ 151 (362)
T cd02872 141 KELREAFEPEA 151 (362)
T ss_pred HHHHHHHHhhC
Confidence 99999999874
No 44
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=47.16 E-value=1.5e+02 Score=31.79 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCCCEEEEccC----------Ch------------HHHHHHhhCCCeEEEEecCcc-------h----hhh
Q 011131 41 SDIVAILRANQITHVRLYDA----------DS------------HMLKALSKSGIEVIVGVLNEE-------V----LGI 87 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRiY~~----------d~------------~vL~A~a~~gi~V~lGv~n~~-------~----~~l 87 (493)
+++...+|+.||+.|||.-. +| ++++.+.+.||+|++.+-... . ...
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 67788999999999999732 22 356677789999999854321 0 011
Q ss_pred cc---c-HHHHHHHHHHhhcccCCCceEEEEEecccccc-CCCCCHHHH-HHHHHHHHHHHHhCC
Q 011131 88 GE---S-ASAAAGWINKNVAAYMPTTNITAIAVGSQVLT-SIPNAASVL-VSAMNNLHKALVASD 146 (493)
Q Consensus 88 a~---~-~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~-~~~~~~~~L-v~am~~v~~aL~~~g 146 (493)
.. + ......| +.....|-....|.+|-+=||+.. ..+.....- -+|...|++.+...-
T Consensus 156 ~~~~~~~~~~~~~w-~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 156 KEENENVEATIDIW-KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNA 219 (407)
T ss_pred cccchhHHHHHHHH-HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcC
Confidence 11 0 1112222 222233334567888888899984 112222222 488888876655443
No 45
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=45.56 E-value=34 Score=32.79 Aligned_cols=36 Identities=39% Similarity=0.498 Sum_probs=31.5
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEe
Q 011131 44 VAILRANQITHVRLYDADSHMLKALSKSGIEVIVGV 79 (493)
Q Consensus 44 v~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv 79 (493)
.|.|+.+|+++||+.+..+.=+.+|.+.||+|.=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 689999999999999998878889999999997333
No 46
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=45.35 E-value=1.4e+02 Score=31.11 Aligned_cols=57 Identities=23% Similarity=0.178 Sum_probs=39.8
Q ss_pred cceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEecC
Q 011131 24 AYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLN 81 (493)
Q Consensus 24 ~~~GVnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~n 81 (493)
..+|||.-...++ |..++.++.+.+.+...|=+..-+|...+.+++.||+|+.-|+.
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 4578887544332 33456677777777777766655666678999999999988874
No 47
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=45.29 E-value=27 Score=37.16 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=30.2
Q ss_pred HHHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEE
Q 011131 43 IVAILRANQITHVRLYDADSHMLKALSKSGIEVIV 77 (493)
Q Consensus 43 vv~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~l 77 (493)
-.|+||.+||++||+. .+|.=+.++.+.||+|.=
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 3789999999999999 788888899999999973
No 48
>PLN00196 alpha-amylase; Provisional
Probab=43.44 E-value=1e+02 Score=33.41 Aligned_cols=55 Identities=35% Similarity=0.432 Sum_probs=37.3
Q ss_pred eeEEecCCCCCCCC---HHHHHHHHHhCCCCEE-----------------EEccCC-h---------HHHHHHhhCCCeE
Q 011131 26 VGVNIGTDVSNMPS---ASDIVAILRANQITHV-----------------RLYDAD-S---------HMLKALSKSGIEV 75 (493)
Q Consensus 26 ~GVnYg~~~~nlps---~~~vv~llk~~~i~~V-----------------RiY~~d-~---------~vL~A~a~~gi~V 75 (493)
-|++|-....+.-. ..+-+..|+++||+.| +.|+.| + .+++++.+.||+|
T Consensus 29 Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkV 108 (428)
T PLN00196 29 QGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQV 108 (428)
T ss_pred EeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEE
Confidence 48887553333222 2344668899999888 445555 2 5778888999999
Q ss_pred EEEec
Q 011131 76 IVGVL 80 (493)
Q Consensus 76 ~lGv~ 80 (493)
++.+-
T Consensus 109 ilDvV 113 (428)
T PLN00196 109 IADIV 113 (428)
T ss_pred EEEEC
Confidence 99875
No 49
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=42.47 E-value=32 Score=36.58 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=31.5
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 011131 44 VAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVL 80 (493)
Q Consensus 44 v~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~ 80 (493)
.|+|+.+|+++||+.. +|.=..+|.+.||+|.==++
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 7899999999999999 89888999999999974443
No 50
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=39.78 E-value=67 Score=28.02 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCEEEEcc--CC---hHHHHHHhhCCCeEE
Q 011131 40 ASDIVAILRANQITHVRLYD--AD---SHMLKALSKSGIEVI 76 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRiY~--~d---~~vL~A~a~~gi~V~ 76 (493)
.+++.+.++++|++.|+++- .. ..+|++|+..|+++.
T Consensus 49 a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 49 AEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 35566788889999999983 33 479999999999864
No 51
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=38.67 E-value=42 Score=35.26 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=30.8
Q ss_pred HHHHHHhCCCCEEEEccCC-hHHHHHHhhCCCeEE
Q 011131 43 IVAILRANQITHVRLYDAD-SHMLKALSKSGIEVI 76 (493)
Q Consensus 43 vv~llk~~~i~~VRiY~~d-~~vL~A~a~~gi~V~ 76 (493)
-.|+|+.+|+++||+...+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4789999999999999999 888889999999986
No 52
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=38.37 E-value=1.2e+02 Score=29.75 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=26.0
Q ss_pred HhcCCCCCcEEEeeccCCCCCCCCC---CCCChHHHHHHHHHHHHhhhc
Q 011131 253 EGLNFSGIPVIVTESGWPWLGGGNE---TDATLENAETYNNNMIRRVLN 298 (493)
Q Consensus 253 ~k~g~~~~~ivVsETGWPS~G~~~~---~~As~~na~~y~~~lv~~~~s 298 (493)
..++++..+|+. .|||.|...+ ...+...++..+.++++.+..
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 445677766654 5999997532 113444555556667777654
No 53
>PRK08815 GTP cyclohydrolase; Provisional
Probab=38.10 E-value=46 Score=35.47 Aligned_cols=37 Identities=38% Similarity=0.443 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 011131 44 VAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVL 80 (493)
Q Consensus 44 v~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~ 80 (493)
.|+|+.+|+++||+...++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888899999999974454
No 54
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.80 E-value=48 Score=35.52 Aligned_cols=38 Identities=42% Similarity=0.463 Sum_probs=33.5
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEecC
Q 011131 44 VAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLN 81 (493)
Q Consensus 44 v~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~n 81 (493)
.|+|+.+|+++||+...++.=+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 78999999999999999998889999999999855553
No 55
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=37.41 E-value=73 Score=28.50 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 011131 41 SDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVL 80 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~ 80 (493)
.++.++|+.+|++.|=+...-+..+.+|++.||+|..+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 4678999999999999999999999999999999999977
No 56
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=37.00 E-value=48 Score=36.21 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 011131 44 VAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVL 80 (493)
Q Consensus 44 v~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~ 80 (493)
.|+|+.+||++||+...+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7899999999999999999888999999999974444
No 57
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=36.19 E-value=51 Score=35.47 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=33.0
Q ss_pred HHHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 011131 43 IVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVL 80 (493)
Q Consensus 43 vv~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~ 80 (493)
-.|+|+.+|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 37899999999999999999888899999999974444
No 58
>PRK09989 hypothetical protein; Provisional
Probab=35.64 E-value=3.9e+02 Score=26.10 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=39.9
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEcc---CC-hHHHHHHhhCCCeEEE
Q 011131 25 YVGVNIGTDVSNMPSASDIVAILRANQITHVRLYD---AD-SHMLKALSKSGIEVIV 77 (493)
Q Consensus 25 ~~GVnYg~~~~nlps~~~vv~llk~~~i~~VRiY~---~d-~~vL~A~a~~gi~V~l 77 (493)
.+.+|.+..-.++ +-.+.++.+++.||+.|-+.. .+ ..+.+.++++||+|..
T Consensus 3 ~~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 3 RFAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred ceeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 3567777776665 567889999999999999843 34 3677788899999876
No 59
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=35.46 E-value=4.7e+02 Score=27.06 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=66.4
Q ss_pred HHHHHHHHhCCCCEEEEccC-----------C-------hHHHHHHhhCCCeEEEEecCc--------chhh--------
Q 011131 41 SDIVAILRANQITHVRLYDA-----------D-------SHMLKALSKSGIEVIVGVLNE--------EVLG-------- 86 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRiY~~-----------d-------~~vL~A~a~~gi~V~lGv~n~--------~~~~-------- 86 (493)
.++++.+|+.|++.|-+|-. | ...|+.+++.|+.|+|=.-.- .++.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~ 106 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDI 106 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccccc
Confidence 56788999999999999953 1 257888899999998743310 0111
Q ss_pred -hc-cc---HHHHHHHHHHh---hcccCC--CceEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEec
Q 011131 87 -IG-ES---ASAAAGWINKN---VAAYMP--TTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKIST 155 (493)
Q Consensus 87 -la-~~---~~~a~~wv~~~---v~~~~~--~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT 155 (493)
+. .+ .++...|.+.. +.++.- ...|..+=|-||.-.. ..-..+|+.++++.++.+....+..++
T Consensus 107 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~-----~~~~~Y~~~l~~~~~~~g~~~~~~~t~ 180 (319)
T PF01301_consen 107 RLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSY-----GTDRAYMEALKDAYRDWGIDPVLLYTT 180 (319)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCT-----SS-HHHHHHHHHHHHHTT-SSSBEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCC-----cccHhHHHHHHHHHHHhhCccceeecc
Confidence 11 11 24556665432 344321 2479999999997622 223678889999999998764343443
No 60
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=35.39 E-value=3e+02 Score=24.03 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=63.8
Q ss_pred HHHHHhCCCCEEEEccCCh----------HHHHHHhhCCCeEEEEecCcchhhhcccHHHHHHHHHHhhcccCCCceEEE
Q 011131 44 VAILRANQITHVRLYDADS----------HMLKALSKSGIEVIVGVLNEEVLGIGESASAAAGWINKNVAAYMPTTNITA 113 (493)
Q Consensus 44 v~llk~~~i~~VRiY~~d~----------~vL~A~a~~gi~V~lGv~n~~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~ 113 (493)
++.|.+.|.++|-+...+. ...+++++.|++...-.......... .......|+++. .| ++
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~p----da 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RP----DA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SS----SE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CC----cE
Confidence 3556778888888776331 35678888999865443332211111 111222366433 22 38
Q ss_pred EEeccccccCCCCCHHHHHHHHHHHHHHHHhCCC--CCceEEeccccCccccCCCCCCccccccchhHHHHHHHHHH
Q 011131 114 IAVGSQVLTSIPNAASVLVSAMNNLHKALVASDL--NFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFL 188 (493)
Q Consensus 114 I~VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~gl--~~~IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL 188 (493)
|+++|+.+. ..+..+|++.|+ .++|.|-+-+....... ..|.-..++.+...+-+..++.|
T Consensus 72 ii~~~~~~a-------------~~~~~~l~~~g~~vP~di~vv~~~~~~~~~~-~~p~it~i~~~~~~~g~~a~~~l 134 (160)
T PF13377_consen 72 IICSNDRLA-------------LGVLRALRELGIRVPQDISVVSFDDSPLLEF-FSPPITTIDQDPREMGREAVELL 134 (160)
T ss_dssp EEESSHHHH-------------HHHHHHHHHTTSCTTTTSEEEEESSSGHHHC-SSSTSEEEEE-HHHHHHHHHHHH
T ss_pred EEEcCHHHH-------------HHHHHHHHHcCCcccccccEEEecCcHHHHH-HcCCCceecCCHHHHHHHHHHHH
Confidence 888887542 223356666776 45687777665444432 33445555555433334444433
No 61
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=35.17 E-value=54 Score=36.69 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=34.2
Q ss_pred HHHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEecC
Q 011131 43 IVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLN 81 (493)
Q Consensus 43 vv~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~n 81 (493)
..|+|+.+||++||+...+|.=+.++++.||+|.=-++.
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 378999999999999999999999999999999855553
No 62
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=34.67 E-value=1.6e+02 Score=30.11 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=43.7
Q ss_pred HHHHhh--CCCeEEEEecCc----chhhhcccHHHHHHHHHHhhcccCCCceEEEEEeccccccCCCCCHHHHHHHHHHH
Q 011131 65 LKALSK--SGIEVIVGVLNE----EVLGIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNL 138 (493)
Q Consensus 65 L~A~a~--~gi~V~lGv~n~----~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v 138 (493)
+.++++ .++||++.|... ....+.++.+...++++ +|..++..-...+|-+==|...........++..|+.+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 555665 389999988752 23344444433333332 22222222245566664444322112345788899999
Q ss_pred HHHHHhC
Q 011131 139 HKALVAS 145 (493)
Q Consensus 139 ~~aL~~~ 145 (493)
|+.|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999864
No 63
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=34.13 E-value=2.4e+02 Score=30.00 Aligned_cols=61 Identities=20% Similarity=0.344 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCccccccchhHHHHHHHHHHHhcCCcccccccCCccc
Q 011131 126 NAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPYYGY 205 (493)
Q Consensus 126 ~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~~~~d~~~vNiyPyf~~ 205 (493)
.+..+...+++.+|+.. .| +.|++..-. .+| |. -.+-+...++|+.+.. +-.+++|||--.
T Consensus 270 ~~~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P---gE----T~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 270 YTRDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP---GE----SEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred CCHHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC---CC----CHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 45677888888887742 12 445554322 133 11 1234567788876643 445666665443
No 64
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=33.89 E-value=91 Score=27.66 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCEEEEc--c--------CC---hHHHHHHhhCCCeEE
Q 011131 40 ASDIVAILRANQITHVRLY--D--------AD---SHMLKALSKSGIEVI 76 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRiY--~--------~d---~~vL~A~a~~gi~V~ 76 (493)
.+++.+.++++|++.|+++ + .. ..+|++|+..||+|.
T Consensus 52 a~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 52 AGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 3566778888999988887 3 22 479999999999974
No 65
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=33.12 E-value=66 Score=34.90 Aligned_cols=96 Identities=17% Similarity=0.257 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCCEEEEc--cCCh----------------HHHHHHhhCCC-----eEEEEecCcchhhhcccHHHHHHH
Q 011131 41 SDIVAILRANQITHVRLY--DADS----------------HMLKALSKSGI-----EVIVGVLNEEVLGIGESASAAAGW 97 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRiY--~~d~----------------~vL~A~a~~gi-----~V~lGv~n~~~~~la~~~~~a~~w 97 (493)
++.+++|+..|+++|-+= +.|+ ..++.+++.|+ .+|.|+|.+..+++......+.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~- 230 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA- 230 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh-
Confidence 567888888888876543 1221 23444555665 36888887766555433222211
Q ss_pred HHHhhcccCCCceEEEEE-------------eccccccCCCCCHHHHHHHHHHHHHHHHhCCCCC
Q 011131 98 INKNVAAYMPTTNITAIA-------------VGSQVLTSIPNAASVLVSAMNNLHKALVASDLNF 149 (493)
Q Consensus 98 v~~~v~~~~~~~~I~~I~-------------VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~gl~~ 149 (493)
.-| +.|.... +|.+.+ ......+..++.+.+.|.++||..
T Consensus 231 -------l~p-~~i~~y~l~~~p~~~~~~~~~~~~~l----p~~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 231 -------LSP-DRIAVFGYAHVPSRRKNQRLIDEAAL----PDAEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred -------cCC-CEEEEeccccccchhhHHhcCCccCC----cCHHHHHHHHHHHHHHHHHCCCEE
Confidence 111 1221111 111111 124566777888999999999953
No 66
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=32.76 E-value=94 Score=32.44 Aligned_cols=76 Identities=25% Similarity=0.186 Sum_probs=51.6
Q ss_pred HHHHHHhhCCCeEEEEecCcchhhhcccHHHHHHHHHHhhcccCCCceEEEEEeccccccCCCCCHHHHHHHHHHHHHHH
Q 011131 63 HMLKALSKSGIEVIVGVLNEEVLGIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKAL 142 (493)
Q Consensus 63 ~vL~A~a~~gi~V~lGv~n~~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~~aL 142 (493)
.||+++.+.|-.+.+|=.- .+.+ .++.|..|+...+..++ ++|.+|+.-|.-... - +-++|
T Consensus 176 ~VLkp~idsGkik~~Ge~~--~d~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag------G-------aI~aL 236 (341)
T COG4213 176 KVLKPLIDSGKIKVVGEQW--TDGW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG------G-------AIAAL 236 (341)
T ss_pred HHHHHHhhCCceEEeeecc--cccc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH------H-------HHHHH
Confidence 7899888888444466432 2333 46778889988888774 569998887763221 1 22578
Q ss_pred HhCCCCCceEEeccc
Q 011131 143 VASDLNFQVKISTPH 157 (493)
Q Consensus 143 ~~~gl~~~IkVsTa~ 157 (493)
++.||.+++|||=-+
T Consensus 237 ~a~Gl~g~vpVsGQD 251 (341)
T COG4213 237 KAQGLAGKVPVSGQD 251 (341)
T ss_pred HhcccCCCCcccCcc
Confidence 889999889977544
No 67
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=32.65 E-value=1.9e+02 Score=34.15 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=59.0
Q ss_pred eeEEecCCCCCC-----C-CHHHHHHHHHhCCCCEEEEccC--ChHHHHHHhhCCCeEEEEecCcch--hhhcccHHHHH
Q 011131 26 VGVNIGTDVSNM-----P-SASDIVAILRANQITHVRLYDA--DSHMLKALSKSGIEVIVGVLNEEV--LGIGESASAAA 95 (493)
Q Consensus 26 ~GVnYg~~~~nl-----p-s~~~vv~llk~~~i~~VRiY~~--d~~vL~A~a~~gi~V~lGv~n~~~--~~la~~~~~a~ 95 (493)
.|||.=+...-+ . ...++++++|+.+++.||+.-- ++.-++-+...||-|+--...... +.-..-.+.+.
T Consensus 303 kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~ 382 (808)
T COG3250 303 RGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVS 382 (808)
T ss_pred eeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHH
Confidence 477765543322 1 2466788999999999999842 567888888999999876654211 10001112233
Q ss_pred HHHHHhhcccCCCceEEEEEecccccc
Q 011131 96 GWINKNVAAYMPTTNITAIAVGSQVLT 122 (493)
Q Consensus 96 ~wv~~~v~~~~~~~~I~~I~VGNEvl~ 122 (493)
.-+++.|...--.-.|..=++|||.-.
T Consensus 383 ~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 383 EEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred HHHHHHHHhccCCCcEEEEeccccccC
Confidence 334455544322346888999999643
No 68
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.61 E-value=1.1e+02 Score=30.18 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHHHhhCCCeEEEEecCcch---hhhcccHHHHHHHHHHhhcccCCCceEEEEEeccccccCCCCCHHHHHHHHHHHH
Q 011131 63 HMLKALSKSGIEVIVGVLNEEV---LGIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLH 139 (493)
Q Consensus 63 ~vL~A~a~~gi~V~lGv~n~~~---~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~ 139 (493)
..+++++..|+||++.|..... ..+..+++...+++++ +..+...-.+.+|-+==|-.... .......|+.+|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~~---~~~~~~fv~~Lr 125 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDVT---FGDYLVFIRALY 125 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCcc---HhHHHHHHHHHH
Confidence 4566777789999998876432 2233444444444333 22222111344554444443211 356778899999
Q ss_pred HHHHhCCC
Q 011131 140 KALVASDL 147 (493)
Q Consensus 140 ~aL~~~gl 147 (493)
++|++.|+
T Consensus 126 ~~l~~~~~ 133 (253)
T cd06545 126 AALKKEGK 133 (253)
T ss_pred HHHhhcCc
Confidence 99987664
No 69
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.08 E-value=3.9e+02 Score=25.55 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=60.8
Q ss_pred HHHHHHHHhCCCCEEEEccCCh---------HHHHHHhhCCCeEEEE--ecCcchhhhcccHHHHHHHHHHhhcccCCCc
Q 011131 41 SDIVAILRANQITHVRLYDADS---------HMLKALSKSGIEVIVG--VLNEEVLGIGESASAAAGWINKNVAAYMPTT 109 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRiY~~d~---------~vL~A~a~~gi~V~lG--v~n~~~~~la~~~~~a~~wv~~~v~~~~~~~ 109 (493)
...++.|.+.|.++|=+..... ...++++..|+++.+- .+.....+.....+.+.+|++++ .
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~ 170 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-------P 170 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-------C
Confidence 4556667677777776554321 2345667788876211 11111111111223444554432 1
Q ss_pred eEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCC--CCceEEeccccCccccCCCCCCccccccchhHHHHHHHHH
Q 011131 110 NITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDL--NFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQF 187 (493)
Q Consensus 110 ~I~~I~VGNEvl~~~~~~~~~Lv~am~~v~~aL~~~gl--~~~IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll~f 187 (493)
.+++|++.|+.+. .. +.++|++.|+ .++|.|.+-+....+..-..|.-.....+...+-+..++.
T Consensus 171 ~~~ai~~~~d~~a---------~g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~~~ 237 (265)
T cd01543 171 KPVGIFACTDARA---------RQ----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAAKL 237 (265)
T ss_pred CCcEEEecChHHH---------HH----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHHHH
Confidence 3567888776542 22 2345555665 3567776666543322222343444554443333444444
Q ss_pred H
Q 011131 188 L 188 (493)
Q Consensus 188 L 188 (493)
|
T Consensus 238 l 238 (265)
T cd01543 238 L 238 (265)
T ss_pred H
Confidence 4
No 70
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=31.22 E-value=1.2e+02 Score=24.95 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=31.5
Q ss_pred CceEEEEEeccc-cccC--------CCCCHHHHHHHHHHHHHHHHhCCCCCceEEecc
Q 011131 108 TTNITAIAVGSQ-VLTS--------IPNAASVLVSAMNNLHKALVASDLNFQVKISTP 156 (493)
Q Consensus 108 ~~~I~~I~VGNE-vl~~--------~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa 156 (493)
...|.+-=|+|| .... .......+.+.|+++-+.+++.+-. .|||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~--~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPS--QPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TT--S-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCC--CcEEee
Confidence 468999999999 5411 1123578999999999999988754 577764
No 71
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=31.20 E-value=1.1e+02 Score=31.55 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=30.3
Q ss_pred HHHHHhCCCCEEEEccCCh-HHHHHHhhCCCeEEEEecCcch
Q 011131 44 VAILRANQITHVRLYDADS-HMLKALSKSGIEVIVGVLNEEV 84 (493)
Q Consensus 44 v~llk~~~i~~VRiY~~d~-~vL~A~a~~gi~V~lGv~n~~~ 84 (493)
-+.|+..|.+. .+-..|. -..+++++-.+.++++.|.+..
T Consensus 51 ~~iLk~~Gy~v-~~~~~~~~~~~~sla~gd~D~~~~~W~p~~ 91 (302)
T COG2113 51 KKILKGLGYTV-ELVTLDTAVMYQSLAKGDLDVFPEAWLPTT 91 (302)
T ss_pred HHHHHhCCCcc-eeeeccHHHHHHHHHcCCCccccceecCCC
Confidence 34678899655 6666664 5668899999999999997654
No 72
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.78 E-value=1.4e+02 Score=26.94 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=35.3
Q ss_pred CHHHHHHHHHhCCCCEEEEccC---------------------C--hHHHHHHhhCCCeEEEEecCc
Q 011131 39 SASDIVAILRANQITHVRLYDA---------------------D--SHMLKALSKSGIEVIVGVLNE 82 (493)
Q Consensus 39 s~~~vv~llk~~~i~~VRiY~~---------------------d--~~vL~A~a~~gi~V~lGv~n~ 82 (493)
++++.++.||..+++.|-+|.- | .++++|+.+.||+|++-+-..
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3678899999988998888753 1 268899999999999887754
No 73
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=29.43 E-value=88 Score=27.27 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCEEEEc--cCC---hHHHHHHhhCCCeEEE
Q 011131 41 SDIVAILRANQITHVRLY--DAD---SHMLKALSKSGIEVIV 77 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRiY--~~d---~~vL~A~a~~gi~V~l 77 (493)
+.+.+.++++|++.|+++ +.. ..+|++|+.+|++|..
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 455677788999988888 333 4799999999998643
No 74
>CHL00041 rps11 ribosomal protein S11
Probab=29.07 E-value=1.3e+02 Score=26.68 Aligned_cols=36 Identities=11% Similarity=0.288 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCEEEEcc--CC---hHHHHHHhhCCCeEE
Q 011131 41 SDIVAILRANQITHVRLYD--AD---SHMLKALSKSGIEVI 76 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRiY~--~d---~~vL~A~a~~gi~V~ 76 (493)
+++.+.++++|++.|+++- .. ..++++|+..|++|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 5566777889999888883 32 478999999999864
No 75
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=28.56 E-value=1.3e+02 Score=27.32 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCEEEEc--c--------CC---hHHHHHHhhCCCeEE
Q 011131 40 ASDIVAILRANQITHVRLY--D--------AD---SHMLKALSKSGIEVI 76 (493)
Q Consensus 40 ~~~vv~llk~~~i~~VRiY--~--------~d---~~vL~A~a~~gi~V~ 76 (493)
.+++.+.++++|++.|+++ + .. ..+|++|+..||+|.
T Consensus 59 ae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 59 AEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 3566778888999988887 3 32 379999999999964
No 76
>PRK07198 hypothetical protein; Validated
Probab=28.15 E-value=54 Score=35.17 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=33.2
Q ss_pred HHHHHhCCCCEE-EEccCChHHHHHHhhCCCeEEEEec
Q 011131 44 VAILRANQITHV-RLYDADSHMLKALSKSGIEVIVGVL 80 (493)
Q Consensus 44 v~llk~~~i~~V-RiY~~d~~vL~A~a~~gi~V~lGv~ 80 (493)
.|+|+.+||++| |+.+.++.=+.++.+.||+|.=-|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 678999999999 9999999888999999999985555
No 77
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.97 E-value=4.5e+02 Score=29.00 Aligned_cols=58 Identities=14% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCccccccchhHHHHHHHHHHHhcCCcccccccCC
Q 011131 126 NAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPY 202 (493)
Q Consensus 126 ~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~~~~d~~~vNiyPy 202 (493)
.+..+...+++.+|++. . .|.|++..-. .|| |.= ..-+...++|+.+.. +-.+++|+|
T Consensus 289 ~t~~~~~~~v~~lr~~~-----~-~i~i~~~~Iv-----GfP---gET----~edf~~Tl~~i~~~~-~~~~~~f~~ 346 (502)
T PRK14326 289 YRSERFLGILEKVRAAM-----P-DAAITTDIIV-----GFP---GET----EEDFQATLDVVREAR-FSSAFTFQY 346 (502)
T ss_pred CCHHHHHHHHHHHHHhC-----C-CCeEEEEEEE-----ECC---CCC----HHHHHHHHHHHHHcC-CCEEEEEee
Confidence 46777888888887752 1 2666654322 244 211 234567788886533 333455554
No 78
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.74 E-value=1.6e+02 Score=28.86 Aligned_cols=82 Identities=11% Similarity=0.263 Sum_probs=49.7
Q ss_pred ccceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCC-----hHHHHHHhhCCCeEEEEecCcchhhhcccHHHHHHH
Q 011131 23 GAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDAD-----SHMLKALSKSGIEVIVGVLNEEVLGIGESASAAAGW 97 (493)
Q Consensus 23 ~~~~GVnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~d-----~~vL~A~a~~gi~V~lGv~n~~~~~la~~~~~a~~w 97 (493)
-+.+||.|-...-.++. . --+++|||+- ..+.++....-+.++|..-.....++ .....|
T Consensus 42 ~sTiGIDFk~kti~l~g----------~-~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W 106 (207)
T KOG0078|consen 42 ISTIGIDFKIKTIELDG----------K-KIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNW 106 (207)
T ss_pred cceEEEEEEEEEEEeCC----------e-EEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHH
Confidence 45678887665544443 1 2477889885 35666666444444444443333343 344668
Q ss_pred HHHhhcccCCCceEEEEEeccccc
Q 011131 98 INKNVAAYMPTTNITAIAVGSQVL 121 (493)
Q Consensus 98 v~~~v~~~~~~~~I~~I~VGNEvl 121 (493)
++ +|..|.+. .|.-+.|||-.=
T Consensus 107 ~~-~I~e~a~~-~v~~~LvGNK~D 128 (207)
T KOG0078|consen 107 IK-NIDEHASD-DVVKILVGNKCD 128 (207)
T ss_pred HH-HHHhhCCC-CCcEEEeecccc
Confidence 64 67777654 788999999753
No 79
>PRK05309 30S ribosomal protein S11; Validated
Probab=26.61 E-value=1.5e+02 Score=26.78 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCEEEEcc--CC---hHHHHHHhhCCCeEE
Q 011131 41 SDIVAILRANQITHVRLYD--AD---SHMLKALSKSGIEVI 76 (493)
Q Consensus 41 ~~vv~llk~~~i~~VRiY~--~d---~~vL~A~a~~gi~V~ 76 (493)
+.+.+.++++|++.|+++- .. ..+|.+|+..|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 5566778889999999993 32 479999999999864
No 80
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.33 E-value=5.6e+02 Score=27.65 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCccccccchhHHHHHHHHHHHhcCCcccccccCC
Q 011131 126 NAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPY 202 (493)
Q Consensus 126 ~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~~~~d~~~vNiyPy 202 (493)
.+.++++.+++.+|++. . .+.+++..-.+ +| |.= .+-+...++|+.+. .+-.+++|+|
T Consensus 269 ~~~~~~~~~v~~lr~~~----~--~i~i~~d~IvG-----~P---gEt----~ed~~~tl~~i~~l-~~~~i~~f~y 326 (440)
T PRK14334 269 YRREKYLERIAEIREAL----P--DVVLSTDIIVG-----FP---GET----EEDFQETLSLYDEV-GYDSAYMFIY 326 (440)
T ss_pred CCHHHHHHHHHHHHHhC----C--CcEEEEeEEEE-----CC---CCC----HHHHHHHHHHHHhc-CCCEeeeeEe
Confidence 45677888888887763 2 24455533221 33 111 23345667887653 3445666654
No 81
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=26.21 E-value=3.2e+02 Score=27.61 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=58.3
Q ss_pred hCCCeEEEEecCc-----chhhhcccHHHHHHH---HHHhhcccCCCceEEEEEeccccccCC--CCCHHHHHHHHHHHH
Q 011131 70 KSGIEVIVGVLNE-----EVLGIGESASAAAGW---INKNVAAYMPTTNITAIAVGSQVLTSI--PNAASVLVSAMNNLH 139 (493)
Q Consensus 70 ~~gi~V~lGv~n~-----~~~~la~~~~~a~~w---v~~~v~~~~~~~~I~~I~VGNEvl~~~--~~~~~~Lv~am~~v~ 139 (493)
+.|+||++.|... ....+..+.+..... +.+-+..| .+.+|-+==|..... ..........|+.+|
T Consensus 71 ~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y----~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~ 146 (343)
T PF00704_consen 71 NPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKY----GFDGIDIDWEYPSSSGDPQDKDNYTAFLKELR 146 (343)
T ss_dssp HTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHH----T-SEEEEEESSTTSTSSTTHHHHHHHHHHHHH
T ss_pred ccCceEEEEeccccccccccccccccHHHHHHHHHhhhhhhccc----Ccceeeeeeeeccccccchhhhhhhhhhhhhh
Confidence 5699998877654 223333333222222 22223343 356666644443322 235678889999999
Q ss_pred HHHHhCCCC-CceEEeccccCccccCCCCCCccccccchhHHHHHHHHHHHhcCCcccccccCCcc
Q 011131 140 KALVASDLN-FQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPYYG 204 (493)
Q Consensus 140 ~aL~~~gl~-~~IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~~~~d~~~vNiyPyf~ 204 (493)
++|++.+-. +.+.++.+.... .. ....+ -+.-|.+..|++.+-.|-|..
T Consensus 147 ~~l~~~~~~~~~~~ls~a~p~~---------~~-----~~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 147 KALKRANRSGKGYILSVAVPPS---------PD-----YYDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHHHSTSEEEEEEECS---------HH-----HHTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hhhcccccccceeEEeeccccc---------cc-----ccccc--ccccccccccccccccccCCC
Confidence 999885110 013345442111 00 00001 133456778999888886665
No 82
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=26.11 E-value=5.6e+02 Score=26.11 Aligned_cols=85 Identities=13% Similarity=0.239 Sum_probs=44.8
Q ss_pred hHHHHHHhh--CCCeEE--E--EecCc-chhhhcccHHHHHHHHHHhhcccCCCceEEEEEecc-ccccC--CCCCHHHH
Q 011131 62 SHMLKALSK--SGIEVI--V--GVLNE-EVLGIGESASAAAGWINKNVAAYMPTTNITAIAVGS-QVLTS--IPNAASVL 131 (493)
Q Consensus 62 ~~vL~A~a~--~gi~V~--l--Gv~n~-~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGN-Evl~~--~~~~~~~L 131 (493)
...+.+++. .++||+ + |=|.. ....++++++.-.+++++ +..+...-.+.+|-+=- |.... .+.....+
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~ 132 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKEL 132 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHHcCCCcEEEechhhhcccCCHHHHHHH
Confidence 344556664 479998 4 33433 245566665554444433 33332222344554421 11110 01234567
Q ss_pred HHHHHHHHHHHHhCCC
Q 011131 132 VSAMNNLHKALVASDL 147 (493)
Q Consensus 132 v~am~~v~~aL~~~gl 147 (493)
+.-|+.+|++|.+.|+
T Consensus 133 ~~~l~el~~~l~~~~~ 148 (318)
T cd02876 133 IQLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 8899999999988765
No 83
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.81 E-value=5.3e+02 Score=29.32 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=29.8
Q ss_pred HHHHHH----HHHhCCCCEEEEccC--Ch----HHHHHHhhCCCeEEEEecC
Q 011131 40 ASDIVA----ILRANQITHVRLYDA--DS----HMLKALSKSGIEVIVGVLN 81 (493)
Q Consensus 40 ~~~vv~----llk~~~i~~VRiY~~--d~----~vL~A~a~~gi~V~lGv~n 81 (493)
+++|++ ..+.+|++.+|+||+ |. ..++++++.|..+...|-.
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~y 145 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICY 145 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEe
Confidence 455544 455799999999997 32 4567778899987776554
No 84
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=25.52 E-value=1.3e+02 Score=29.08 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=35.2
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHHhhCCCeEEEEecCc
Q 011131 44 VAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNE 82 (493)
Q Consensus 44 v~llk~~~i~~VRiY~~d~~vL~A~a~~gi~V~lGv~n~ 82 (493)
.|+|+.+||+.||+-..+|.=..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 678999999999999999988889999999999888864
No 85
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=25.09 E-value=78 Score=32.71 Aligned_cols=220 Identities=14% Similarity=0.146 Sum_probs=106.8
Q ss_pred HHHHHHhhCCCeEE--EEecCcchhh----h---cc-----cHHHHHHHHHHhhcccCCC-ceEEEEEeccccccCCC--
Q 011131 63 HMLKALSKSGIEVI--VGVLNEEVLG----I---GE-----SASAAAGWINKNVAAYMPT-TNITAIAVGSQVLTSIP-- 125 (493)
Q Consensus 63 ~vL~A~a~~gi~V~--lGv~n~~~~~----l---a~-----~~~~a~~wv~~~v~~~~~~-~~I~~I~VGNEvl~~~~-- 125 (493)
.++.-++..||+|- .=||-...+. . .. -.+...+++++-+..| .. .+|...=|=||++..+.
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 56777778888864 3344332221 1 10 1233446666655554 43 47888888899998653
Q ss_pred -----CC------HHHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCccccccchhHHHHHHHHHHHhcCCc
Q 011131 126 -----NA------ASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSF 194 (493)
Q Consensus 126 -----~~------~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~~~~d~ 194 (493)
.. ...+..+.+-.|++..+ ++.-.-+- +++. + .-..-+..+++.|.+.+-+
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~NDy-~~~~----~-------~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYNDY-NIES----P-------AKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEES-STTS----T-------HHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEeccc-cccc----h-------HHHHHHHHHHHHHHhCCCc
Confidence 11 24566677777777653 33333221 1111 1 1123345566666654433
Q ss_pred ccccccCCccccCCCCccccccccccCCCCCCceecCCCCcccccHHHHHHHHHHHHHHhcCCCCCcEEEeeccCCCCCC
Q 011131 195 YMLNAYPYYGYTNGNGIFPIDYALFRPMPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEGLNFSGIPVIVTESGWPWLGG 274 (493)
Q Consensus 195 ~~vNiyPyf~~~~~~~~i~l~~Alf~~~~~~~g~~d~~~~~~y~n~fda~~Dav~~a~~k~g~~~~~ivVsETGWPS~G~ 274 (493)
+ +..+ || +..... +. .+.+...|+++.--+++|.|||.-=.....
T Consensus 204 I--------dgIG-----------~Q------~H~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~ 248 (320)
T PF00331_consen 204 I--------DGIG-----------LQ------SHFDAG----YP------PEQIWNALDRFASLGLPIHITELDVRDDDN 248 (320)
T ss_dssp S---------EEE-----------EE------EEEETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSST
T ss_pred c--------ceec-----------hh------hccCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCC
Confidence 1 1110 11 112111 11 333444555554456999999974333322
Q ss_pred CCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCcce-EEEEEecCCC-CCCCCCCCceeeeecCCCceeee
Q 011131 275 GNETDATLENAETYNNNMIRRVLNDTGPPSQPDMPIN-TYVYELFNED-KRPGPISEKNWGVFFTNGTSVYP 344 (493)
Q Consensus 275 ~~~~~As~~na~~y~~~lv~~~~s~~GTP~rpg~~~~-~y~F~~FDE~-wK~G~~~E~~wGlf~~d~~~ky~ 344 (493)
... ....+.++.+++.+++.+.+.. |. .++ +.+..+.|.. |.+... -.+=+||+.|.+||-.
T Consensus 249 ~~~-~~~~~~qA~~~~~~~~~~~~~~-----~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 249 PPD-AEEEEAQAEYYRDFLTACFSHP-----PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp TSC-HHHHHHHHHHHHHHHHHHHHTT-----HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhCC-----cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 110 2346678889999999887641 01 233 3344455532 554311 1233688889888843
No 86
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=24.47 E-value=1.9e+02 Score=30.46 Aligned_cols=123 Identities=19% Similarity=0.353 Sum_probs=68.8
Q ss_pred ecCCCCCCCCHHH---HHHHHHhCCCCEEEEccC------------ChHHHHHHhhCCCeEEE--------EecCcchhh
Q 011131 30 IGTDVSNMPSASD---IVAILRANQITHVRLYDA------------DSHMLKALSKSGIEVIV--------GVLNEEVLG 86 (493)
Q Consensus 30 Yg~~~~nlps~~~---vv~llk~~~i~~VRiY~~------------d~~vL~A~a~~gi~V~l--------Gv~n~~~~~ 86 (493)
|.|.|=| |+++| +++.||+. +..-+||. |.-.++-+-+.|+++++ |++++....
T Consensus 188 hNPTGmD-PT~EQW~qia~vik~k--~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGn 264 (410)
T KOG1412|consen 188 HNPTGMD-PTREQWKQIADVIKSK--NLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGN 264 (410)
T ss_pred cCCCCCC-CCHHHHHHHHHHHHhc--CceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccc
Confidence 6676655 77765 56677765 35556653 34577888888888875 677764333
Q ss_pred h---cccHHHHHHHHHHhhc----cc--CC---CceEEEEEeccccccCC------CCCHHHHHHHHHHHHHHHHhCCCC
Q 011131 87 I---GESASAAAGWINKNVA----AY--MP---TTNITAIAVGSQVLTSI------PNAASVLVSAMNNLHKALVASDLN 148 (493)
Q Consensus 87 l---a~~~~~a~~wv~~~v~----~~--~~---~~~I~~I~VGNEvl~~~------~~~~~~Lv~am~~v~~aL~~~gl~ 148 (493)
+ ..+++ ...-|+..+. .- .| ..+|. -|+|... ..+...+...|+.+|++|++.
T Consensus 265 ltvv~~n~a-~i~~v~SQl~lviR~~~SNPPAyGArIV-----~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~--- 335 (410)
T KOG1412|consen 265 LTVVVNNPA-VIAGVKSQLTLVIRSNWSNPPAYGARIV-----HKVLSTPELREQWIQSIKTMSSRIKKMRTALRDH--- 335 (410)
T ss_pred eEEEecChh-HHHHHHHHHHHHHhhccCCCcchhhHHH-----HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 2 12211 1111222211 00 01 01111 2444332 234566778889999999864
Q ss_pred CceEEeccccCccccCC
Q 011131 149 FQVKISTPHSMDIIPRP 165 (493)
Q Consensus 149 ~~IkVsTa~~~~vl~~s 165 (493)
=+...|+-+||-+.+.
T Consensus 336 -L~aL~TPGtWDHI~~Q 351 (410)
T KOG1412|consen 336 -LVALKTPGTWDHITQQ 351 (410)
T ss_pred -HHhcCCCCcHHHHHhh
Confidence 2678999999877553
No 87
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=22.98 E-value=1.1e+02 Score=33.04 Aligned_cols=41 Identities=32% Similarity=0.394 Sum_probs=30.0
Q ss_pred HHHHH----HHHhCCCCEEEEccC--Ch----HHHHHHhhCCCeEEEEecC
Q 011131 41 SDIVA----ILRANQITHVRLYDA--DS----HMLKALSKSGIEVIVGVLN 81 (493)
Q Consensus 41 ~~vv~----llk~~~i~~VRiY~~--d~----~vL~A~a~~gi~V~lGv~n 81 (493)
++||+ ..-.+|++.+|+||+ |. ..++|.+++|..+...+.-
T Consensus 97 DDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 97 DDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred hHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEe
Confidence 45554 334689999999998 43 5678888999887766654
No 88
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=22.23 E-value=2.7e+02 Score=23.92 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=27.1
Q ss_pred cccceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEE
Q 011131 22 LGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRL 57 (493)
Q Consensus 22 ~~~~~GVnYg~~~~nlps~~~vv~llk~~~i~~VRi 57 (493)
+...+-|+-...+..+++.+++.+.|++.||..-++
T Consensus 30 e~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 30 EDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred CCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 345677777766767888889999999999865554
No 89
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=21.72 E-value=1.7e+02 Score=32.67 Aligned_cols=75 Identities=17% Similarity=0.433 Sum_probs=47.9
Q ss_pred CCCCCcEEEeeccCCCCCCCCC--C-----CCChHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEecC-CCCCCCCC
Q 011131 256 NFSGIPVIVTESGWPWLGGGNE--T-----DATLENAETYNNNMIRRVLNDTGPPSQPDMPINTYVYELFN-EDKRPGPI 327 (493)
Q Consensus 256 g~~~~~ivVsETGWPS~G~~~~--~-----~As~~na~~y~~~lv~~~~s~~GTP~rpg~~~~~y~F~~FD-E~wK~G~~ 327 (493)
-|+|.+|.|+|-|-+...+... . ..=++..+.|++.+.+.+.. .|.- -..+|+.++-| =.|..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn-----v~GYf~WSLmDnfEw~~G-- 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN-----VKGYFVWSLLDNFEWLDG-- 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc-----eeeEEEeEcccchhhhcC--
Confidence 4779999999999988654321 0 12344556666766666653 2221 23488888887 235555
Q ss_pred CCceeeeecCC
Q 011131 328 SEKNWGVFFTN 338 (493)
Q Consensus 328 ~E~~wGlf~~d 338 (493)
..-.|||++.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 46789999853
No 90
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=21.25 E-value=5.6e+02 Score=22.93 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=30.9
Q ss_pred HHHHHHhhCCCeEEEEecCcchhhhcccHHHHHHHHHHhhcccCCCceEEEEEeccccccCC-CCCHHHH
Q 011131 63 HMLKALSKSGIEVIVGVLNEEVLGIGESASAAAGWINKNVAAYMPTTNITAIAVGSQVLTSI-PNAASVL 131 (493)
Q Consensus 63 ~vL~A~a~~gi~V~lGv~n~~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~-~~~~~~L 131 (493)
.+++.|++.|++|.----.++...+..++. ..+-+++.=..-+| .++|-.|++..+ +-+..+|
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~-V~~~L~~~G~e~LP-----itlVdGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPE-VNQLLQTEGAEALP-----ITLVDGEIVKTGRYPTNEEL 94 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHH-HHHHHHHH-GGG-S-----EEEETTEEEEESS---HHHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHH-HHHHHHHcCcccCC-----EEEECCEEEEecCCCCHHHH
Confidence 456777788888777655555555555532 23333333222234 466777777654 3333444
No 91
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.04 E-value=2.4e+02 Score=27.38 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=38.5
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccC---C-hHHHHHHhhCCCeEEE
Q 011131 26 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDA---D-SHMLKALSKSGIEVIV 77 (493)
Q Consensus 26 ~GVnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~---d-~~vL~A~a~~gi~V~l 77 (493)
+.||++..-..+ +.++.++.+++.|++.|-++.. + ..+.+.++++||+|..
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 567877655444 5788999999999999999742 3 3567778899999753
No 92
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=20.48 E-value=9.1e+02 Score=25.81 Aligned_cols=61 Identities=16% Similarity=0.299 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEeccccCccccCCCCCCccccccchhHHHHHHHHHHHhcCCcccccccCCccc
Q 011131 126 NAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPSTATFNSAWNSTIYQILQFLKNTKSFYMLNAYPYYGY 205 (493)
Q Consensus 126 ~~~~~Lv~am~~v~~aL~~~gl~~~IkVsTa~~~~vl~~s~pPs~g~F~~~~~~~l~~ll~fL~~~~d~~~vNiyPyf~~ 205 (493)
.+..+++.+++.+|++. . .+.|++..-. .+| | |-.+.+...++|+.+. .+-.+++++|--+
T Consensus 267 ~~~~~~~~~i~~l~~~~----~--~i~i~~~~I~-----G~P---g----ET~e~~~~t~~fl~~~-~~~~~~~~~~sp~ 327 (430)
T TIGR01125 267 GSGEQQLDFIERLREKC----P--DAVLRTTFIV-----GFP---G----ETEEDFQELLDFVEEG-QFDRLGAFTYSPE 327 (430)
T ss_pred CCHHHHHHHHHHHHHhC----C--CCeEeEEEEE-----ECC---C----CCHHHHHHHHHHHHhc-CCCEEeeeeccCC
Confidence 45677888888887752 1 2444443211 133 1 1124467788888664 3455677766554
No 93
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.47 E-value=8.5e+02 Score=24.36 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=47.9
Q ss_pred HHHHHHhCCCCEEEEccCC------hHHHHHHhhCCCeEEEEecCcchhhhcccHHHHHHHHHHhhcccCCCceEEEEEe
Q 011131 43 IVAILRANQITHVRLYDAD------SHMLKALSKSGIEVIVGVLNEEVLGIGESASAAAGWINKNVAAYMPTTNITAIAV 116 (493)
Q Consensus 43 vv~llk~~~i~~VRiY~~d------~~vL~A~a~~gi~V~lGv~n~~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~V 116 (493)
+++.....|++.||++... ..+++.+++.|++|.+++...- ..+++...+++++.. .+ + +..|.+
T Consensus 87 ~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~----~~~~~~~~~~~~~~~-~~-g---~~~i~l 157 (266)
T cd07944 87 LLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAIS----GYSDEELLELLELVN-EI-K---PDVFYI 157 (266)
T ss_pred HHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeec----CCCHHHHHHHHHHHH-hC-C---CCEEEE
Confidence 3444556788899998653 2455666678999888876421 123444444444432 22 2 222322
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHH
Q 011131 117 GSQVLTSIPNAASVLVSAMNNLHKAL 142 (493)
Q Consensus 117 GNEvl~~~~~~~~~Lv~am~~v~~aL 142 (493)
.. .-+...+.++-..++.+|+.+
T Consensus 158 ~D---T~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 158 VD---SFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred ec---CCCCCCHHHHHHHHHHHHHhc
Confidence 22 112345677777777776654
Done!