Query 011133
Match_columns 493
No_of_seqs 329 out of 2047
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 21:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 2.2E-95 7E-100 770.4 42.8 475 2-482 1-481 (553)
2 1jgt_A Beta-lactam synthetase; 100.0 2.2E-77 7.6E-82 627.4 34.5 387 60-480 57-472 (513)
3 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 6.9E-76 2.4E-80 615.3 27.0 394 42-462 26-455 (503)
4 1ao0_A Glutamine phosphoribosy 100.0 2.5E-36 8.6E-41 312.9 23.6 231 2-242 1-287 (459)
5 1xff_A D-fructose-6-, glucosam 100.0 2.8E-35 9.6E-40 279.7 22.6 179 2-190 1-222 (240)
6 1ecf_A Glutamine phosphoribosy 100.0 1.5E-31 5.1E-36 279.9 21.4 179 2-185 1-235 (504)
7 2bpl_A Glucosamine--fructose-6 100.0 2.7E-31 9.4E-36 284.8 21.5 176 2-187 1-219 (608)
8 3mdn_A Glutamine aminotransfer 99.9 1.1E-26 3.8E-31 223.3 11.6 142 43-190 82-255 (274)
9 1te5_A Conserved hypothetical 99.9 2.4E-23 8.3E-28 198.7 6.2 174 1-188 1-252 (257)
10 1ea0_A Glutamate synthase [NAD 99.6 2.3E-15 7.9E-20 169.0 14.3 159 17-183 144-394 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.6 1.1E-14 3.9E-19 163.8 16.2 159 17-183 144-393 (1520)
12 2e18_A NH(3)-dependent NAD(+) 99.1 7.3E-11 2.5E-15 112.7 6.5 133 207-354 6-141 (257)
13 1kqp_A NAD+ synthase, NH(3)-de 99.0 3.2E-10 1.1E-14 108.8 7.9 144 205-355 20-170 (271)
14 1xng_A NH(3)-dependent NAD(+) 99.0 2.3E-10 7.9E-15 109.8 6.6 131 207-354 9-144 (268)
15 3bl5_A Queuosine biosynthesis 99.0 6.7E-10 2.3E-14 103.2 9.5 117 225-353 3-130 (219)
16 3n05_A NH(3)-dependent NAD(+) 99.0 8.1E-10 2.8E-14 117.8 8.4 138 206-355 305-446 (590)
17 3k32_A Uncharacterized protein 98.9 2.7E-09 9.2E-14 97.9 9.6 110 226-350 7-116 (203)
18 3fiu_A NH(3)-dependent NAD(+) 98.8 5.2E-09 1.8E-13 98.9 8.2 133 206-353 12-153 (249)
19 3p52_A NH(3)-dependent NAD(+) 98.8 2.6E-09 8.9E-14 101.0 5.9 132 207-353 6-144 (249)
20 2pg3_A Queuosine biosynthesis 98.8 1.9E-08 6.6E-13 94.2 10.3 158 226-411 3-177 (232)
21 1wxi_A NH(3)-dependent NAD(+) 98.8 9.4E-09 3.2E-13 98.6 8.1 138 214-354 26-172 (275)
22 1wy5_A TILS, hypothetical UPF0 98.7 7.9E-08 2.7E-12 94.4 10.8 125 208-347 5-137 (317)
23 2dpl_A GMP synthetase, GMP syn 98.7 3.2E-08 1.1E-12 96.6 7.6 125 209-348 5-133 (308)
24 2hma_A Probable tRNA (5-methyl 98.6 4.3E-08 1.5E-12 98.3 8.1 115 225-349 9-137 (376)
25 2nz2_A Argininosuccinate synth 98.6 1.5E-07 5.1E-12 95.1 11.1 112 224-346 4-122 (413)
26 1kor_A Argininosuccinate synth 98.6 1.7E-07 5.8E-12 94.5 11.2 110 227-346 2-118 (400)
27 1vl2_A Argininosuccinate synth 98.6 1.5E-07 5.2E-12 94.4 10.5 109 226-345 15-130 (421)
28 2der_A TRNA-specific 2-thiouri 98.5 1.5E-07 5.2E-12 94.3 8.4 113 225-348 17-145 (380)
29 3sdb_A Glutamine-dependent NAD 98.5 3.2E-08 1.1E-12 106.7 3.4 87 207-296 341-431 (680)
30 3q4g_A NH(3)-dependent NAD(+) 98.5 1.1E-07 3.9E-12 90.8 5.9 81 216-296 29-113 (279)
31 1k92_A Argininosuccinate synth 98.3 5.7E-07 2E-11 91.2 7.5 113 221-344 6-130 (455)
32 3a2k_A TRNA(Ile)-lysidine synt 98.3 1.4E-06 4.8E-11 90.0 9.7 119 214-347 5-131 (464)
33 3tqi_A GMP synthase [glutamine 98.2 2.2E-06 7.7E-11 89.7 9.1 127 208-349 214-344 (527)
34 1gpm_A GMP synthetase, XMP ami 98.2 1.6E-06 5.4E-11 90.9 7.6 125 207-346 210-339 (525)
35 3dpi_A NAD+ synthetase; ssgcid 98.2 1.4E-06 4.9E-11 83.2 5.8 133 213-354 32-181 (285)
36 2ywb_A GMP synthase [glutamine 98.2 4.4E-06 1.5E-10 87.1 9.3 124 208-347 193-320 (503)
37 1sur_A PAPS reductase; assimil 98.1 3.3E-06 1.1E-10 77.9 7.1 118 213-347 35-159 (215)
38 3ilv_A Glutamine-dependent NAD 98.1 6.2E-06 2.1E-10 88.4 9.2 90 207-296 283-407 (634)
39 2vxo_A GMP synthase [glutamine 98.1 2.8E-05 9.7E-10 83.6 13.4 79 207-295 223-304 (697)
40 2c5s_A THII, probable thiamine 98.0 7.2E-06 2.5E-10 83.3 7.7 108 225-348 187-303 (413)
41 1ni5_A Putative cell cycle pro 98.0 1.6E-05 5.4E-10 81.3 9.7 111 218-347 6-120 (433)
42 3uow_A GMP synthetase; structu 97.9 1.9E-05 6.4E-10 83.1 8.3 78 208-295 239-320 (556)
43 4f4h_A Glutamine dependent NAD 97.9 5.8E-05 2E-09 79.6 12.1 139 206-355 279-426 (565)
44 2o8v_A Phosphoadenosine phosph 97.8 1.9E-05 6.4E-10 74.7 5.5 108 226-347 46-160 (252)
45 1zun_A Sulfate adenylyltransfe 97.8 6.8E-05 2.3E-09 73.4 9.0 113 225-349 46-160 (325)
46 2oq2_A Phosphoadenosine phosph 97.7 9.5E-05 3.2E-09 70.2 8.6 113 226-348 42-164 (261)
47 1vbk_A Hypothetical protein PH 97.4 0.0002 6.8E-09 69.5 7.0 80 226-347 180-267 (307)
48 3rjz_A N-type ATP pyrophosphat 97.4 0.00021 7.3E-09 66.2 6.1 60 227-296 6-73 (237)
49 2goy_A Adenosine phosphosulfat 96.8 0.0045 1.5E-07 59.0 9.8 59 226-295 55-115 (275)
50 2wsi_A FAD synthetase; transfe 96.1 0.0069 2.4E-07 58.6 6.3 69 226-294 54-136 (306)
51 3fwk_A FMN adenylyltransferase 92.8 0.14 4.7E-06 49.0 5.9 66 226-291 59-138 (308)
52 1ofd_A Ferredoxin-dependent gl 25.0 65 0.0022 37.4 5.0 31 2-32 1-32 (1520)
53 1ea0_A Glutamate synthase [NAD 23.6 62 0.0021 37.4 4.6 38 2-39 1-47 (1479)
54 1vl1_A 6PGL, 6-phosphogluconol 22.2 2.8E+02 0.0096 24.7 8.0 33 204-236 23-55 (232)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=2.2e-95 Score=770.36 Aligned_cols=475 Identities=55% Similarity=0.955 Sum_probs=419.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEECCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEeeEEcCh
Q 011133 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n~ 81 (493)
|||+|+++.++........+..|+.+|+|||||++|++..+++++||+||+|+|...+.||+.+++++++++|||+|||+
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~ 80 (553)
T 1ct9_A 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH 80 (553)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTH
T ss_pred CEEEEEEcCCCcchhHHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECH
Confidence 99999998664322335678899999999999999999999999999999999977799999988889999999999999
Q ss_pred HHHHHHh-cCCCccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeC
Q 011133 82 EALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (493)
Q Consensus 82 ~el~~~l-~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (493)
.+|+++| ..+.|++.||||+|+++|++||.+++++++|+|||++||..+++++++||++|+|||||+...++.++||||
T Consensus 81 ~eLr~~L~~~~~f~s~sDtEvil~l~~~~g~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe 160 (553)
T 1ct9_A 81 QALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASE 160 (553)
T ss_dssp HHHHHHHTTTSCCCSCCTTHHHHHHHHHHTTTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESS
T ss_pred HHHHHHHhccCccCCCCcHHHHHHHHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeec
Confidence 9999999 337899999999999999999999999999999999999988999999999999999999843578999999
Q ss_pred cchhccccCCcEEeCCCcEEEecCCceeeeeCCCCCCC-CCCCCCCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchh
Q 011133 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239 (493)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs 239 (493)
+++|...+++|++|+||+++.++.++.++||++.+... ..++.++.+++++++|.+||++|+.+++|||++||||+|||
T Consensus 161 ~~al~~~~~~i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS 240 (553)
T 1ct9_A 161 MKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSS 240 (553)
T ss_dssp GGGTTTTCSEEEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHH
T ss_pred hHHHHhhcCCEEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHH
Confidence 99999989999999999999887677889999876442 23455778999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccc----cccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHHHHHHhhccccc
Q 011133 240 LVASITARHLAGTKAA----RQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV 315 (493)
Q Consensus 240 ~iaa~a~~~~~~~~~~----~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 315 (493)
+|++++++...+.... ..|..++++||+++++++|..+|+++|+++|++|+++.++.+++.+.+++++++.+++++
T Consensus 241 ~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~ 320 (553)
T 1ct9_A 241 IISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDV 320 (553)
T ss_dssp HHHHHHHHHC----------------CEEEEEESTTCHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHhhccccccccccccccCceeEEEecCCCCcHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCc
Confidence 9999999876421000 001024899999999889999999999999999999999999999999999998887765
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCCChhHHhHHHHHHHHhhcccccccccccccccCceec
Q 011133 316 TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEAR 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~r 395 (493)
+.++..+++|.+++.+++.|++|+|||+||||+||||++|+..|....|.+++.+++.+++.++++|.||++|++|+|+|
T Consensus 321 ~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElfgGY~~~~~~~~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~R 400 (553)
T 1ct9_A 321 TTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEAR 400 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHTCSGGGGGCCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEE
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEECCCchhcccCcHhHhhCcchhhHHHHHHHHHHHHhhhcchhhhhHHhhcCceeE
Confidence 44555678899999999999999999999999999999998888888888888888999999999999999999999999
Q ss_pred cccCChHHHHHHHcCCccccccCCCCCCcchHHHHHhhccCCCCCCChhhhcccCCCCCCCCchhhHHHHHHHHHhhcCC
Q 011133 396 VPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVHI 475 (493)
Q Consensus 396 ~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~~~~~~~~~l~~ 475 (493)
+||||++|||||++||+++|+.++. ..+|+|||+||++ +||++|++|+|+||+.|.+..|++.+++++++++++
T Consensus 401 ~PfLD~~lve~a~~lP~~~k~~~~g--~~~K~iLR~a~~~----~LP~~i~~R~K~~f~~p~~~~w~~~l~~~~~~~~~~ 474 (553)
T 1ct9_A 401 VPFLDKKFLDVAMRINPQDKMCGNG--KMEKHILRECFEA----YLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSD 474 (553)
T ss_dssp CGGGCHHHHHHHHHSCGGGTCC-----CCTTHHHHHHHGG----GSCHHHHTCCCCTTCCTTCHHHHHHHHHHHHHHSCH
T ss_pred CCcCCHHHHHHHhcCCHHHhccCCC--CcchHHHHHHHHh----hCCHHHHcCCCcCCCCCccHhHHHHHHHHHHHHhCh
Confidence 9999999999999999999998631 2489999999999 999999999999999999877998899999999999
Q ss_pred cccccCC
Q 011133 476 PSYADFS 482 (493)
Q Consensus 476 ~~l~~~g 482 (493)
+.+++.|
T Consensus 475 ~~~~~~~ 481 (553)
T 1ct9_A 475 QQLETAR 481 (553)
T ss_dssp HHHHTHH
T ss_pred HHHHhhh
Confidence 8887644
No 2
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=100.00 E-value=2.2e-77 Score=627.39 Aligned_cols=387 Identities=23% Similarity=0.328 Sum_probs=329.6
Q ss_pred CCCceeCC----CcEEEEEeeEEcChHHHHHHhcCCCccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEE
Q 011133 60 DQPLYNED----KKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIV 135 (493)
Q Consensus 60 ~qP~~~~~----~~~~~~~nG~i~n~~el~~~l~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~ 135 (493)
.||+.+.. ++++++|||||||+.||+++|. +.|++.||||+|+++|++||.+++++++|+|||++||.. ++++
T Consensus 57 ~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~-~~f~t~sDtEvil~l~~~~g~~~~~~l~G~fA~~i~d~~--~l~~ 133 (513)
T 1jgt_A 57 APDRAVARSLTGAPTTAVLAGEIYNRDELLSVLP-AGPAPEGDAELVLRLLERYDLHAFRLVNGRFATVVRTGD--RVLL 133 (513)
T ss_dssp CGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSC-SSCCCSSHHHHHHHHHHHHGGGGGGTCCEEEEEEEEETT--EEEE
T ss_pred CCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhC-CCCCCCCHHHHHHHHHHHHhHHhHhhcCeeEEEEEEECC--EEEE
Confidence 68887543 7899999999999999999995 889999999999999999999999999999999999984 4999
Q ss_pred EecCCCCceEEEEEecCcEEEEEeCcchhcccc----------------CCcEEeCCCcEEEec--CCc--eeeeeCCCC
Q 011133 136 ARDAIGITSLYIGWGLDGSIWISSELKGLNDDC----------------EHFEAFPPGHLYSSK--SGG--LKRWYNPTW 195 (493)
Q Consensus 136 ~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~----------------~~i~~l~pG~~~~~~--~~~--~~~~~~~~~ 195 (493)
+||++|+|||||+.. ++.++||||+++|.... ++|++|+||+++.++ .++ .++||++..
T Consensus 134 aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~l~i~~~~g~~~~~~yw~~~~ 212 (513)
T 1jgt_A 134 ATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAVMDIDLGSGTAVTHRTWTPGL 212 (513)
T ss_dssp EECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEEEEEETTTTEEEEEECCCCCC
T ss_pred EECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcEEEEEcCCCCEEEEeecCCcc
Confidence 999999999999985 78899999999998764 899999999999887 554 578999765
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcH
Q 011133 196 YSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDL 275 (493)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~ 275 (493)
.. ...+.++.+++++++|.+||++|+.+++++|++||||+|||+|++++++.. .++.+||+++++.+|.
T Consensus 213 ~~-~~~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~----------~~v~tfti~~~~~~E~ 281 (513)
T 1jgt_A 213 SR-RILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA----------GELDTVSMGTDTSNEF 281 (513)
T ss_dssp SC-BCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH----------SSCEEEEEECSSCCCH
T ss_pred cc-cCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC----------CCceEEEcCCCCCCHH
Confidence 32 223445677899999999999999999999999999999999999999875 4799999999988999
Q ss_pred HHHHHHHHHhCCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 011133 276 KYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (493)
Q Consensus 276 ~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~ 355 (493)
.+|+++|+++|++|+++.++++++.+.+++.+++.+.+++....+.+++|.+++.+ +.|++|++||+||||+|+||.+|
T Consensus 282 ~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g~~VvltG~GaDElfgGY~~~ 360 (513)
T 1jgt_A 282 REARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGPERRILTGYGADIPLGGMHRE 360 (513)
T ss_dssp HHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTTHHHHTTTCCC
T ss_pred HHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcCCCEEEeCCChhhcccCcccc
Confidence 99999999999999999999998888999999888776543344556778888777 67999999999999999999987
Q ss_pred ccCCChhHHhHHHHHHHHhhccccccccccccc----ccCceeccccCChHHHHHHHcCCccccccCCCCCCcchHHHHH
Q 011133 356 HKAPNKEEFHRETCHKIKALHQYDCLRANKSTS----AWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRK 431 (493)
Q Consensus 356 ~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~----~~gie~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~iLR~ 431 (493)
+....+..+ .+++++..+++ ||++| ++|+|+|+||||++|||||++||+++|++++. +|+|||+
T Consensus 361 ---~~~~~l~~e---~l~~l~~~~ll--Dr~sm~la~a~glE~R~PfLD~~lve~a~~lP~~~k~~~~~----~K~iLR~ 428 (513)
T 1jgt_A 361 ---DRLPALDTV---LAHDMATFDGL--NEMSPVLSTLAGHWTTHPYWDREVLDLLVSLEAGLKRRHGR----DKWVLRA 428 (513)
T ss_dssp ---SCCHHHHHH---HHHHHHHCTTC--CTTCTHHHHTTTCEEECGGGSHHHHHHHHHBCHHHHEETTE----ETHHHHH
T ss_pred ---CChhhcCHH---HHHHHhhccch--hhhhhhhhhhcCcceECCCCCHHHHHHHHcCCHHHhcCCCC----CHHHHHH
Confidence 334445544 34556666777 99999 99999999999999999999999999998864 8999999
Q ss_pred hhccCCCCCCChhhhcccCCCCCCCCchhhHHHHHHHH-HhhcCCccccc
Q 011133 432 AFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHA-EQHVHIPSYAD 480 (493)
Q Consensus 432 a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~~~~~~-~~~l~~~~l~~ 480 (493)
||++ +||++|++|+|+||+.|.+..|+ +++++ ++++++..++.
T Consensus 429 a~~~----~lP~~i~~R~K~gf~~p~~~~~~--l~~~~~~~~~~~~~~~~ 472 (513)
T 1jgt_A 429 AMAD----ALPAETVNRPKLGVHEGSGTTSS--FSRLLLDHGVAEDRVHE 472 (513)
T ss_dssp HHTT----TSCHHHHHSCCC---------CH--HHHHHHHHCCCTTSHHH
T ss_pred HHHh----hCCHHHHhCCcCCCCCChhHHHH--HHHHHHHhhcCHHHHHH
Confidence 9999 99999999999999999987886 78888 88788775553
No 3
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=100.00 E-value=6.9e-76 Score=615.26 Aligned_cols=394 Identities=23% Similarity=0.355 Sum_probs=334.2
Q ss_pred CCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEeeEEcChH---HHHHHhcCCCccCCCHHHHHHHHHHHHhHhHHhhcc
Q 011133 42 GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHE---ALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLD 118 (493)
Q Consensus 42 ~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n~~---el~~~l~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~ 118 (493)
+.+++||+|++|.+ ..+.||+.+++++++++ |+|||+. ||+++|.| .|.+.||||+|+++|++||.+++++++
T Consensus 26 ~~~~igh~R~~t~~-~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g-~f~s~sDtEvil~l~~~~g~~~l~~l~ 101 (503)
T 1q15_A 26 KGEALSNGYLFIEQ-NGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEG-EAYLANDAELLALLFTRLGANALALAE 101 (503)
T ss_dssp EEEEETTEEEEEET-TCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCG-GGGGCCHHHHHHHHHHHHCGGGGGGCC
T ss_pred CceeEeeeeEEEcC-CCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhC-CCCCCChHHHHHHHHHHHHHHHHHHcC
Confidence 35789999999974 57899999888888888 9999999 99999977 899999999999999999999999999
Q ss_pred ccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcE-----------------EEEEeCcchhccc--------cCCcEE
Q 011133 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGS-----------------IWISSELKGLNDD--------CEHFEA 173 (493)
Q Consensus 119 G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~-----------------~~faSe~~~l~~~--------~~~i~~ 173 (493)
|+|||++||+.++ ++++||++|+|||||+.. ++. ++||||+++|... +++|++
T Consensus 102 G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~~~v~~ 179 (503)
T 1q15_A 102 GDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQR 179 (503)
T ss_dssp SSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSBTTEEE
T ss_pred EEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCcccCCeEE
Confidence 9999999999877 999999999999999974 666 8999999999886 899999
Q ss_pred eCCCcEEEecCCc------eeeeeCCCCCCC-CCCCCCCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHH
Q 011133 174 FPPGHLYSSKSGG------LKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITA 246 (493)
Q Consensus 174 l~pG~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~ 246 (493)
|+||+++.++.++ .++||++..... ...+.++.+++++++|.+||++|+.+++||+++||||+|||+|+++++
T Consensus 180 l~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~ 259 (503)
T 1q15_A 180 LKPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALAS 259 (503)
T ss_dssp CCSSEEEEEEECTTCCEEEEEEESCCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHT
T ss_pred ECCCeEEEEeCCCcccccceeeecCCcccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHH
Confidence 9999998876432 678999765331 222345567899999999999999999999999999999999999998
Q ss_pred HHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHH
Q 011133 247 RHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFL 326 (493)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 326 (493)
+.. .++.+||+++++.+|..+|+++|+++|++|+++.++++++.+.+++.+++.+.+++....+.+++|.
T Consensus 260 ~~~----------~~~~~~t~~~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~ 329 (503)
T 1q15_A 260 RHF----------KKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFN 329 (503)
T ss_dssp TTC----------SEEEEEEEEETTBCCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HhC----------CCcEEEEEeCCCccHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHH
Confidence 754 4799999999988999999999999999999999999998899999999888765434445677888
Q ss_pred HHHHHHhCCCeEEEeccCccccccCCccc-ccCCChhHHhHHHHHHHHhhcccccccccccccccCceeccccCChHHHH
Q 011133 327 MSRKIKSLGVKMVISGEGSDEIFGGYLYF-HKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFIN 405 (493)
Q Consensus 327 ~~~~a~~~g~~v~ltG~GgDelfgGy~~~-~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~r~PflD~~lve 405 (493)
+++.| +.|++|+|||+||||+|+||++| .+.+....+..+..+++. +++.|.||++|++|+|+|+||||++|||
T Consensus 330 l~~~a-~~~~~VvltG~GaDElf~GY~~~~~~~~~~~~l~~e~~~r~~----~~L~r~Dr~~ma~glE~R~PfLD~~lve 404 (503)
T 1q15_A 330 VYRQA-QGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTR----WTGEFATHGASCYGIDIRHPFWSHSLIS 404 (503)
T ss_dssp HHHHH-BTTBSEEECCTTHHHHHTTTSCTTCCCSCHHHHHHHHHHHHH----HHSTTCCHHHHHTTCEEECTTCCHHHHH
T ss_pred HHHHH-HCCCCEEEeCCChhhhccChHHHHHhcCCHHHHhHHHHHHHH----HhhhhhhHHHHHcCCCEECCCCCHHHHH
Confidence 88887 57899999999999999999988 455555555555554443 5688999999999999999999999999
Q ss_pred HHHcCCccccccCCCCCCcchHHHHHhhccCCCCCCChhhhcccCCCCCCCCchhhH
Q 011133 406 VAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWI 462 (493)
Q Consensus 406 ~~~~lP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~ 462 (493)
||++||+++|+.++. +|+|||+||++.. +||++|++|+|+||+.|++..|+
T Consensus 405 ~a~~lP~~~k~~~~~----~K~iLR~a~~~~~--~lP~~i~~R~K~gf~~~~~~~~~ 455 (503)
T 1q15_A 405 LCHALHPDYKIFDNE----VKNILREYADSLQ--LLPKDIVWRKKIGIHEGSSVNQA 455 (503)
T ss_dssp HHHTBCGGGTEETTE----ESHHHHHHHHHTS--CSCHHHHCC---------CHHHH
T ss_pred HHHhCCHHHHhCCCC----cHHHHHHHHhcCC--cCCHHHhcCCCCCCCCCcchHHH
Confidence 999999999998865 8999999998721 59999999999999999986664
No 4
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=100.00 E-value=2.5e-36 Score=312.94 Aligned_cols=231 Identities=24% Similarity=0.376 Sum_probs=185.5
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE---------------------------CCEEEEEeeeeec
Q 011133 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (493)
|||+|+++.+ . ....+..|+.+|+|||||+.|++.. +++++||+|++|.
T Consensus 1 CGI~G~~~~~--~--~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~R~at~ 76 (459)
T 1ao0_A 1 CGVFGIWGHE--E--APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATA 76 (459)
T ss_dssp CEEEEEESCT--B--HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEEECCC-
T ss_pred CEEEEEECCc--c--hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEEEEecCCC
Confidence 9999999764 1 2455778999999999999999986 4589999999999
Q ss_pred CCC--CCCCCcee---CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh--------HhHHhhccc
Q 011133 55 DPA--SGDQPLYN---EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (493)
Q Consensus 55 ~~~--~~~qP~~~---~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g--------~~~~~~l~G 119 (493)
|.. .++||+.. .+++++++|||+|||+.+|+++| .|+.|.+.||||+|+++|++|| .+++++++|
T Consensus 77 g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G 156 (459)
T 1ao0_A 77 GGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKG 156 (459)
T ss_dssp ---CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCE
T ss_pred CCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcc
Confidence 964 48999986 56889999999999999999999 6889999999999999999987 789999999
Q ss_pred cEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCc--eeeeeCCCC-
Q 011133 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG--LKRWYNPTW- 195 (493)
Q Consensus 120 ~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~--~~~~~~~~~- 195 (493)
+|||++||+ ++++++||++|+|||||+.. ++.++||||.++|... .+.|++|+||+++.++.++ ..+||++..
T Consensus 157 ~fa~~i~d~--~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~~~~~ 233 (459)
T 1ao0_A 157 AYAFLIMTE--TEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSMNINR 233 (459)
T ss_dssp EEEEEEECS--SEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCSSCCC
T ss_pred ceEEEEEeC--CEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCCCccc
Confidence 999999995 89999999999999999985 6789999999999875 6789999999999887765 457887531
Q ss_pred -------CCCCCCC---CCCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHH
Q 011133 196 -------YSEAIPS---TPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVA 242 (493)
Q Consensus 196 -------~~~~~~~---~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~ia 242 (493)
.....|. ..+.+.+.+..+.+.+.+.+.....+ +.+-.||+.+.
T Consensus 234 ~~c~feyiyfarp~s~~~~~~v~~~r~~lg~~La~~~~~~~Dv---VV~VP~~g~~~ 287 (459)
T 1ao0_A 234 SICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESAVEADV---VTGVPDSSISA 287 (459)
T ss_dssp CEEHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHCCCCSE---EECCTTTTHHH
T ss_pred cccceeeeeccCCcchhccHhHHHHHHHHHHHHHHhcccCCcE---EEEECCcHHHH
Confidence 1111221 34467788888988888876432222 23446666543
No 5
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=100.00 E-value=2.8e-35 Score=279.65 Aligned_cols=179 Identities=32% Similarity=0.445 Sum_probs=158.5
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceE-EE---------------------------CCEEEEEeeeee
Q 011133 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-QH---------------------------GDFYLAHQRLAI 53 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~-~~---------------------------~~~~l~h~rl~~ 53 (493)
|||+|+++.++. ...+..|+..|+|||||+.|++ .. +.+++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at 76 (240)
T 1xff_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (240)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCS
T ss_pred CcEEEEEcCcch----HHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEEEEeccC
Confidence 999999986532 3567889999999999999999 52 468999999999
Q ss_pred cCC--CCCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHhH----------hHHhhccc
Q 011133 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDG 119 (493)
Q Consensus 54 ~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g~----------~~~~~l~G 119 (493)
.|. ..++||+.+ ++++++|||+|||+.+|+++| .|+.|.+.||||+|+++|++++. +++++++|
T Consensus 77 ~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G 154 (240)
T 1xff_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (240)
T ss_dssp SSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCE
T ss_pred CCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 985 358999987 689999999999999999999 68999999999999999999864 79999999
Q ss_pred cEEEEEEECC-CCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccccCCcEEeCCCcEEEecCCceeee
Q 011133 120 MFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRW 190 (493)
Q Consensus 120 ~fa~~~~d~~-~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~ 190 (493)
+|||++||.. .++++++||+ |||||+.. ++.++||||+++|.....++..|+||+++.++.++++.|
T Consensus 155 ~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pG~~~~i~~~~~~~~ 222 (240)
T 1xff_A 155 AYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIF 222 (240)
T ss_dssp EEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSEEEECCTTCEEEECSSCEEEE
T ss_pred ceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCeEEEECCCEEEEEECCeEEEE
Confidence 9999999975 5899999998 99999984 678999999999998888899999999999887665443
No 6
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.98 E-value=1.5e-31 Score=279.85 Aligned_cols=179 Identities=22% Similarity=0.386 Sum_probs=152.6
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEEC----------------------------CEEEEEeeeee
Q 011133 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLAI 53 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~~ 53 (493)
|||+|+++.+.. ...+..|+.+|+|||||++|++..+ ++++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT 76 (504)
T 1ecf_A 1 CGIVGIAGVMPV----NQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPT 76 (504)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCB
T ss_pred CEEEEEEcChhH----HHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCc
Confidence 999999975421 3457789999999999999999763 48999999999
Q ss_pred cCCC--CCCCCceeC-CCcEEEEEeeEEcChHHHHHHh--c-CCCccCCCHHHHHHHHHHHH----hH------------
Q 011133 54 IDPA--SGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--T-NHKFRTGSDCDVIAHLYEEY----GE------------ 111 (493)
Q Consensus 54 ~~~~--~~~qP~~~~-~~~~~~~~nG~i~n~~el~~~l--~-~~~~~~~~D~e~i~~~~~~~----g~------------ 111 (493)
.|.. .++||+... +++++++|||+|||+.+|+++| . +..|.+.||||+|+++|.++ |.
T Consensus 77 ~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~ 156 (504)
T 1ecf_A 77 AGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAI 156 (504)
T ss_dssp TTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHH
T ss_pred CCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHH
Confidence 9964 599999854 3569999999999999999999 2 47899999999999999886 32
Q ss_pred -hHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEec--C--cEEEEEeCcchhccc-cCCcEEeCCCcEEEecCC
Q 011133 112 -NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL--D--GSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSG 185 (493)
Q Consensus 112 -~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~--~--~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~ 185 (493)
+++++++|+|||++|+.. ++++++||++|+|||||+... + +.++||||.++|... ++.|+.|+||+++.++.+
T Consensus 157 ~~~~~~l~G~fa~v~~~~~-~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~~ 235 (504)
T 1ecf_A 157 AATNRLIRGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITEE 235 (504)
T ss_dssp HHHHHHCCEEEEEEEEETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEETT
T ss_pred HHhhhhcCccceEEEEEcC-CeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeCC
Confidence 579999999999999854 589999999999999999852 3 479999999999875 567999999999888644
No 7
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.97 E-value=2.7e-31 Score=284.81 Aligned_cols=176 Identities=33% Similarity=0.464 Sum_probs=157.3
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE----------------------------CCEEEEEeeeee
Q 011133 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----------------------------GDFYLAHQRLAI 53 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~----------------------------~~~~l~h~rl~~ 53 (493)
|||+|+++.++. ...+..|+..|+|||||+.|++.. +.+++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at 76 (608)
T 2bpl_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (608)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCC
T ss_pred CeEEEEEcCCch----HHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCC
Confidence 999999976532 356788999999999999999976 458999999999
Q ss_pred cCCC--CCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHH---hH-------hHHhhccc
Q 011133 54 IDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY---GE-------NFVDMLDG 119 (493)
Q Consensus 54 ~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~---g~-------~~~~~l~G 119 (493)
.|.. .++||+.+ ++++++|||+|||+.+|+++| .|+.|.+.||||+|+++|+++ |. +++++++|
T Consensus 77 ~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G 154 (608)
T 2bpl_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (608)
T ss_dssp SSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCS
T ss_pred CCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcC
Confidence 9853 58999987 789999999999999999999 689999999999999999987 74 68999999
Q ss_pred cEEEEEEECCC-CEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccccCCcEEeCCCcEEEecCCce
Q 011133 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (493)
Q Consensus 120 ~fa~~~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~ 187 (493)
+|||++||..+ ++++++||+ +||||+.. ++.++||||+++|......+..|+||+++.++.+++
T Consensus 155 ~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~~~~~l~~G~i~~i~~~~~ 219 (608)
T 2bpl_A 155 AYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSV 219 (608)
T ss_dssp SEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCCEEEECCTTCEEEECSSCE
T ss_pred ceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCCeEEEECCCeEEEEECCeE
Confidence 99999999987 899999998 99999985 678999999999998888999999999988775543
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.94 E-value=1.1e-26 Score=223.27 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=110.0
Q ss_pred CEEEEEeeeeecCC--CCCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cC--CCc---cCCCHHHHHHHHHHHHhH--
Q 011133 43 DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN--HKF---RTGSDCDVIAHLYEEYGE-- 111 (493)
Q Consensus 43 ~~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~--~~~---~~~~D~e~i~~~~~~~g~-- 111 (493)
.+++||+|++|.|. ..|+|||.. ++++++|||+|+|+.+|+++| .+ +.| .+.||||+|++++.++|.
T Consensus 82 ~~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~ 159 (274)
T 3mdn_A 82 GLFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEH 159 (274)
T ss_dssp EEEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTT
T ss_pred CEEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcC
Confidence 37899999999985 359999987 679999999999999999999 34 334 689999999999988774
Q ss_pred -------hHHhhcccc-----------EEEEEEECCCCEEEEEecC-CCCceEEEEEecC--cEEEEEeCcchhccccCC
Q 011133 112 -------NFVDMLDGM-----------FSFVLLDTRDNSFIVARDA-IGITSLYIGWGLD--GSIWISSELKGLNDDCEH 170 (493)
Q Consensus 112 -------~~~~~l~G~-----------fa~~~~d~~~~~l~~~rD~-~G~~pLyy~~~~~--~~~~faSe~~~l~~~~~~ 170 (493)
+++++++|+ |+++++|+ ++|+++||+ +|++||+|+...+ +.++||||. |......
T Consensus 160 ~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~~~ 235 (274)
T 3mdn_A 160 DPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDEGD 235 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CCSC
T ss_pred CHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCCce
Confidence 689999998 99999987 799999998 9999966655433 789999998 4334467
Q ss_pred cEEeCCCcEEEecCCceeee
Q 011133 171 FEAFPPGHLYSSKSGGLKRW 190 (493)
Q Consensus 171 i~~l~pG~~~~~~~~~~~~~ 190 (493)
++.|+||+++.++.++++.+
T Consensus 236 ~~~v~pGeiv~i~~~~v~~~ 255 (274)
T 3mdn_A 236 WTELRPGRMLTIGAEGAAER 255 (274)
T ss_dssp CEECCSSEEEEEETTEEEEE
T ss_pred EEEECcCEEEEEeCCeEEEE
Confidence 99999999999887765543
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.88 E-value=2.4e-23 Score=198.73 Aligned_cols=174 Identities=17% Similarity=0.143 Sum_probs=134.7
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccC------CCCCceEEEC-----------------------------CEE
Q 011133 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRG------PDWSGLYQHG-----------------------------DFY 45 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RG------pd~~g~~~~~-----------------------------~~~ 45 (493)
||||+|+++... .. +...+..|+||| +|+.|+.... .++
T Consensus 1 MCgi~G~~~~~~--~~----~~~gL~~Lq~RG~~~~~~~DgaGIa~~~~~~~~~~k~~g~v~~~~~~~~l~~~~l~g~~~ 74 (257)
T 1te5_A 1 MCELLGMSANVP--TD----IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETV 74 (257)
T ss_dssp -CCEEEEEEEEE--EE----CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEE
T ss_pred CCeEEEEEcCCC--cc----HHHHHHHHHhccCCCCCCCCeEEEEEEeCCceEEEECCCccccchHHHHHhhCCccccEE
Confidence 999999997432 11 112467899999 7999987642 368
Q ss_pred EEEeeeeecCCC--CCCCCceeC--CCcEEEEEeeEEcChHHHHHHhcCCCccCCCHHHHHHHHHHHHh-----------
Q 011133 46 LAHQRLAIIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG----------- 110 (493)
Q Consensus 46 l~h~rl~~~~~~--~~~qP~~~~--~~~~~~~~nG~i~n~~el~~~l~~~~~~~~~D~e~i~~~~~~~g----------- 110 (493)
+||+|+++.|.. .|+||+... .++++++|||.|.|+.+ +.+ ++.|.+.||||+|++++.+.-
T Consensus 75 IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~--~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~ 151 (257)
T 1te5_A 75 IGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPG--FYRPVGETDSEAAFCDLLNRVRRAFPEPVPVE 151 (257)
T ss_dssp EEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCC--SSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred EEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhc--cCCcccCCHHHHHHHHHHHHHHHhcCCCchHH
Confidence 999999999854 499999864 56899999999999998 654 355899999999999987632
Q ss_pred --HhHHhhcc------ccEEEEEEECCCCEEEEEec----------CCCCceEEE-------EE---ecCcEEEEEeCcc
Q 011133 111 --ENFVDMLD------GMFSFVLLDTRDNSFIVARD----------AIGITSLYI-------GW---GLDGSIWISSELK 162 (493)
Q Consensus 111 --~~~~~~l~------G~fa~~~~d~~~~~l~~~rD----------~~G~~pLyy-------~~---~~~~~~~faSe~~ 162 (493)
.+++.++. |.|++++.|. ++|+++|| ++|.+||.. .. ..++.++||||.
T Consensus 152 a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~- 228 (257)
T 1te5_A 152 VLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP- 228 (257)
T ss_dssp HHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC-
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc-
Confidence 13555555 9999999998 89999999 999999965 20 123468999995
Q ss_pred hhccccCCcEEeCCCcEEEecCCcee
Q 011133 163 GLNDDCEHFEAFPPGHLYSSKSGGLK 188 (493)
Q Consensus 163 ~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (493)
|. ..+.++.|+||+++.++.+.+.
T Consensus 229 -l~-~~~~wr~v~pGe~v~i~~~~~~ 252 (257)
T 1te5_A 229 -LT-DNENWTLQQSGEWVLWWGGEVL 252 (257)
T ss_dssp -SS-SSSSCEEECTTCEEEEETTEEE
T ss_pred -cC-CCCCeeEeCCCEEEEEECCEEE
Confidence 44 3578999999999998877643
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.61 E-value=2.3e-15 Score=169.03 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhhhccCCC----CCceEEEC-----------------------------CEEEEEeeeeecCCC--CCCC
Q 011133 17 KRVRVLELSRRLKHRGPD----WSGLYQHG-----------------------------DFYLAHQRLAIIDPA--SGDQ 61 (493)
Q Consensus 17 ~~~~~~~~~~~l~~RGpd----~~g~~~~~-----------------------------~~~l~h~rl~~~~~~--~~~q 61 (493)
....+......++||+.+ +.++...+ .++++|+|++|.+.. .++|
T Consensus 144 ~~r~ly~~r~~le~~~~~~~~~~~yi~Sls~~~~vyKGmgl~~~v~~~y~dL~d~~~~g~~aigH~RySTnt~p~w~~AQ 223 (1479)
T 1ea0_A 144 FELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQ 223 (1479)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGGGGSTTCCBSEEEEEECCCSCSCCCSTTSS
T ss_pred HHHHHHHHHHHHHHhhhhccCCcEEEEEecCcEEEEecCcCHHHhhhhhhhhcccccceeEEEeeecccCCCCCCcccCC
Confidence 345566778889999954 34444322 489999999998864 4889
Q ss_pred CceeCCCcEEEEEeeEEcChHHHHHHhc------------------C-CCccCCCHHHHH---HHHHHHHh---------
Q 011133 62 PLYNEDKKIVVTVNGEIYNHEALRERLT------------------N-HKFRTGSDCDVI---AHLYEEYG--------- 110 (493)
Q Consensus 62 P~~~~~~~~~~~~nG~i~n~~el~~~l~------------------~-~~~~~~~D~e~i---~~~~~~~g--------- 110 (493)
||. +++|||||.|...+++.+. + ..|.+.||||++ ++++.+.|
T Consensus 224 Pf~------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g~~l~~A~~~ 297 (1479)
T 1ea0_A 224 PFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMM 297 (1479)
T ss_dssp CCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccE------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 995 3999999999999997641 1 237899999999 55443434
Q ss_pred -----------------------HhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc
Q 011133 111 -----------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167 (493)
Q Consensus 111 -----------------------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~ 167 (493)
..+++.++|.|++++.|. +.++++|||.|.|||.|+..+++.+++|||..+|...
T Consensus 298 liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~ 375 (1479)
T 1ea0_A 298 LVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKID 375 (1479)
T ss_dssp HSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCC
T ss_pred hCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccCc
Confidence 123678999999999988 8999999999999999998666789999999999655
Q ss_pred cCCc-E--EeCCCcEEEec
Q 011133 168 CEHF-E--AFPPGHLYSSK 183 (493)
Q Consensus 168 ~~~i-~--~l~pG~~~~~~ 183 (493)
...+ + +|.||+++.++
T Consensus 376 ~a~~vrkg~l~PGemv~id 394 (1479)
T 1ea0_A 376 ETQVIEKGRLGPGEMIAVD 394 (1479)
T ss_dssp GGGEEEEEECCTTCEEEEE
T ss_pred chheeeccCCCCCeEEEEE
Confidence 4443 4 89999998775
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.58 E-value=1.1e-14 Score=163.78 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhhhccCCCCCceEEEC-----------------------------CEEEEEeeeeecCCC--CCCCCcee
Q 011133 17 KRVRVLELSRRLKHRGPDWSGLYQHG-----------------------------DFYLAHQRLAIIDPA--SGDQPLYN 65 (493)
Q Consensus 17 ~~~~~~~~~~~l~~RGpd~~g~~~~~-----------------------------~~~l~h~rl~~~~~~--~~~qP~~~ 65 (493)
....+......++||+.++.++...+ .++++|+|++|.+.. .++|||.
T Consensus 144 ~~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~- 222 (1520)
T 1ofd_A 144 LDRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMR- 222 (1520)
T ss_dssp HHHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCS-
T ss_pred HHHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchh-
Confidence 44567777889999997655555432 589999999998865 3899995
Q ss_pred CCCcEEEEEeeEEcChHHHHHH-----------------h--cC-CCccCCCHHHHHHHHHH---HHh------------
Q 011133 66 EDKKIVVTVNGEIYNHEALRER-----------------L--TN-HKFRTGSDCDVIAHLYE---EYG------------ 110 (493)
Q Consensus 66 ~~~~~~~~~nG~i~n~~el~~~-----------------l--~~-~~~~~~~D~e~i~~~~~---~~g------------ 110 (493)
+++|||||.|...+++. | .+ ..|.+.||||++.++++ +.|
T Consensus 223 -----~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~~A~~~liP 297 (1520)
T 1ofd_A 223 -----LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILVP 297 (1520)
T ss_dssp -----SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHSC
T ss_pred -----eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHHHHHHHhCc
Confidence 39999999999888822 2 12 35789999999964443 444
Q ss_pred ----------------------HhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhcccc
Q 011133 111 ----------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC 168 (493)
Q Consensus 111 ----------------------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~ 168 (493)
..+++.++|.|++++.|. +.++++|||.|.|||.|+..+++.+++|||..+|....
T Consensus 298 eaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~ 375 (1520)
T 1ofd_A 298 EAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPE 375 (1520)
T ss_dssp CCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCG
T ss_pred chhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcc
Confidence 112578899999999998 89999999999999999887667899999999996554
Q ss_pred CC-cE--EeCCCcEEEec
Q 011133 169 EH-FE--AFPPGHLYSSK 183 (493)
Q Consensus 169 ~~-i~--~l~pG~~~~~~ 183 (493)
.. ++ +|.||+++.++
T Consensus 376 a~~vrkg~l~PGemv~id 393 (1520)
T 1ofd_A 376 VDIVEKGRLAPGQMIAVD 393 (1520)
T ss_dssp GGEEEEEECCTTCEEEEE
T ss_pred hheeeccCCCCCeEEEEE
Confidence 33 34 89999998775
No 12
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.10 E-value=7.3e-11 Score=112.67 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhC
Q 011133 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG 286 (493)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg 286 (493)
.+++.+.+.+.+++. ...++.+.||||+||+++++++.+.... .++.++++.+....|...|+++|+.+|
T Consensus 6 ~~~~~~~l~~~i~~~--~~~~vvv~lSGGiDSs~~~~l~~~~~g~--------~~v~av~~~~~~~~~~~~a~~~a~~lg 75 (257)
T 2e18_A 6 YDKVIERILEFIREK--GNNGVVIGISGGVDSATVAYLATKALGK--------EKVLGLIMPYFENKDVEDAKLVAEKLG 75 (257)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCSSCSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CCCcEEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEEeCCCCchHHHHHHHHHHHhC
Confidence 456677777777776 5568999999999999999999887521 468888887653478899999999999
Q ss_pred CcceEEEeChhhhHHHHHHHHHhhcccccccccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011133 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
++|+++.+++. .+.+.+.+.. .+......+ .+.+..+.+.|.+.|+.++.||+. ||.+.||..
T Consensus 76 i~~~~i~i~~~--~~~~~~~l~~--~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~-~e~~~Gy~t 141 (257)
T 2e18_A 76 IGYKVINIKPI--VDSFVENLEL--NLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNR-SEFLTGYFT 141 (257)
T ss_dssp CEEEECCCHHH--HHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCH-HHHHHTCSC
T ss_pred CCEEEEEChHH--HHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCch-hHHhcCCee
Confidence 99988877532 2222221111 001000011 123445667777889999999985 567788843
No 13
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.03 E-value=3.2e-10 Score=108.76 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=88.0
Q ss_pred CcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccC-CcceeeeeccCCCCcHHHHHHHHH
Q 011133 205 YDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWG-TQLHSFCVGLEGSPDLKYAKEVAD 283 (493)
Q Consensus 205 ~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~-~~~~~~t~~~~~~~d~~~A~~va~ 283 (493)
+.++++.+.|.+.|+++.. ..+.+.||||+||++++++|++....-+.. .+ .++.++++.+....|...|+++|+
T Consensus 20 ~~i~~~~~~L~d~v~~~g~--~~vvvgLSGGvDSsv~a~La~~a~~~lg~~--~~~~~v~av~~~~~~~~d~~~A~~va~ 95 (271)
T 1kqp_A 20 QEIEDRVNFLKQYVKKTGA--KGFVLGISGGQDSTLAGRLAQLAVESIREE--GGDAQFIAVRLPHGTQQDEDDAQLALK 95 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTC--CEEEEECCSSHHHHHHHHHHHHHHHHHHHT--TCCCEEEEEECCSSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--CCEEEECCCCHHHHHHHHHHHHHHHHhccc--CCCceEEEEEeCCCCCCCHHHHHHHHH
Confidence 3455677777777776543 357788999999999999988765210000 00 256677766433457899999999
Q ss_pred HhCC-cceEEEeChhhhHHHHHHHHHhh-ccc-ccccccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 011133 284 YLGT-VHHEFHFTVQDGIDAIEEVIYHV-ETY-DVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (493)
Q Consensus 284 ~lg~-~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~---~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~ 355 (493)
++|+ +|+++.+++ ..+.+.+.+... +.+ ......+ -..+..++..|.+.|. +++++.+.||++.||..+
T Consensus 96 ~lgi~~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~-lvl~tgn~~E~~~Gy~t~ 170 (271)
T 1kqp_A 96 FIKPDKSWKFDIKS--TVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGL-LVLGTDHAAEAVTGFFTK 170 (271)
T ss_dssp HHCCSEEEECCCHH--HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTC-EEBCCCCHHHHTTTCSCT
T ss_pred hcCCCeEEEeccHH--HHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCC-EEEECccHHHhccCCccc
Confidence 9999 888887753 233333333321 111 1101111 1223444555666675 567777789999999643
No 14
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.02 E-value=2.3e-10 Score=109.82 Aligned_cols=131 Identities=16% Similarity=0.108 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHH
Q 011133 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADY 284 (493)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~ 284 (493)
.+.+.+.|.+.+... ...++.+.||||+||+++++++.+... .++.++++.+.. ..|...|+++|+.
T Consensus 9 ~~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~~~l~~~~~~---------~~v~av~~~~~~~~~~e~~~a~~~a~~ 77 (268)
T 1xng_A 9 IVYLCDFLEKEVQKR--GFKKVVYGLSGGLDSAVVGVLCQKVFK---------ENAHALLMPSSVSMPENKTDALNLCEK 77 (268)
T ss_dssp HHHHHHHHHHHHHHT--TCCCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEECCCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEccCcHHHHHHHHHHHHhCC---------CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 344555555555442 345799999999999999999988751 478899987653 3578899999999
Q ss_pred hCCcceEEEeChhhhHHHHHHHHHhhcccccccccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011133 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 285 lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
+|++|+++.+++. .+.+.+. ..........+ ...+..+.+.|.+.|+.|+.||+ .||.+.||..
T Consensus 78 lgi~~~~i~i~~~--~~~~~~~---~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-~~E~~~Gy~t 144 (268)
T 1xng_A 78 FSIPYTEYSIAPY--DAIFSSH---FKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSN-KSERMLGYGT 144 (268)
T ss_dssp HTCCEEECCCHHH--HHHHHHH---CTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHHHTCSC
T ss_pred cCCCEEEEeChHH--HHHHHHH---hhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCc-HHHHhcCccc
Confidence 9999988877541 2221111 11000000111 12234556677788998887775 6888989853
No 15
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.02 E-value=6.7e-10 Score=103.23 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=73.6
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhCCcceEEEeCh-hhhH-
Q 011133 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTV-QDGI- 300 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~-~~~~- 300 (493)
..+++++||||+||+++++++.+.. .++.++++.+.. .+|.++++++|+++|++|+.+.++. .+..
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~~----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~ 72 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKEF----------EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLAP 72 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGST
T ss_pred CCCEEEEccCcHHHHHHHHHHHHcC----------CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhcc
Confidence 4579999999999999999998763 478888876543 3678899999999999999998764 2111
Q ss_pred -----HHHHHHHHhhcccccccccchHHHH--HHHHHHHhCCCeEEEeccCccccccCCc
Q 011133 301 -----DAIEEVIYHVETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (493)
Q Consensus 301 -----~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~g~~v~ltG~GgDelfgGy~ 353 (493)
+.+..-......+. .........| .+.+.|++.|+++++||+++|+. ++|+
T Consensus 73 ~~l~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~-~~~~ 130 (219)
T 3bl5_A 73 NALTRNDIEIEVKDGELPS-TFVPGRNLVFLSFASILAYQIGARHIITGVCETDF-SGYP 130 (219)
T ss_dssp GGGC--------------C-CCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-----CCG
T ss_pred cccccccccccccccCCCC-ceeechHHHHHHHHHHHHHHcCCCEEEEecccccc-CCCC
Confidence 01111000001111 1111222233 34577788899999999999995 5664
No 16
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.96 E-value=8.1e-10 Score=117.77 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=94.2
Q ss_pred cHHHHHHHHHHHHHHhhccC--cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC--CcHHHHHHH
Q 011133 206 DPLVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEV 281 (493)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~v 281 (493)
..+++.+.+...++++++.. .++.+.||||+||+++++++++.+.. .++.++++..... .|...|+++
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~--------~~v~~v~m~~~~~~~~~~~~A~~l 376 (590)
T 3n05_A 305 ADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA--------QNVYGVSMPSKYSSDHSKGDAAEL 376 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCSSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCc--------ccEEEEEECCCCCCHHHHHHHHHH
Confidence 45677777777787777543 57899999999999999999987521 4788999876543 578899999
Q ss_pred HHHhCCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 011133 282 ADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (493)
Q Consensus 282 a~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~ 355 (493)
|+++|++|+++.+++. .+.+...+. .+......+...+.+..+...|.+.|..|+.|| +.||++.||..+
T Consensus 377 a~~lgi~~~~i~i~~~--~~~~~~~l~-~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~~Gy~t~ 446 (590)
T 3n05_A 377 ARRTGLNFRTVSIEPM--FDAYMASLG-LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELAVGYSTL 446 (590)
T ss_dssp HHHHTCEEEECCSHHH--HHHHHHHHC-CCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHHHTCCCS
T ss_pred HHHcCCcEEEEEChHH--HHHHHHHhc-ccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHhcCchhh
Confidence 9999999999887542 222211111 000000011112234455666777899999999 888999898643
No 17
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.93 E-value=2.7e-09 Score=97.93 Aligned_cols=110 Identities=23% Similarity=0.217 Sum_probs=74.0
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHHH
Q 011133 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~ 305 (493)
.++++++|||+||+++++++.+. |.++.++++.+...+|..+++++|+.+|++|+.+.++.......+..
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~----------g~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~ 76 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKL----------GYNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDRKIVEKAADM 76 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHT----------TEEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCTHHHHHHHHH
T ss_pred CeEEEEEECcHHHHHHHHHHHHc----------CCCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHH
Confidence 57999999999999999988764 35788888876544588999999999999999998875422222222
Q ss_pred HHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccccc
Q 011133 306 VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (493)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfg 350 (493)
... ...+.. ........+...+++ |+++++||+.+|+..-
T Consensus 77 ~~~-~~~~~~---~c~~~~~~~l~~~A~-g~~~i~tGh~~dD~~e 116 (203)
T 3k32_A 77 IIE-HKYPGP---AIQYVHKTVLEILAD-EYSILADGTRRDDRVP 116 (203)
T ss_dssp HHH-HSSSHH---HHHHHHHHHHHHHTT-TCSEEECCCCTTCCSS
T ss_pred HHh-cCCCcc---HHHHHHHHHHHHHhc-CCCEEEECCCcccchh
Confidence 221 111110 011122223333334 8999999999998653
No 18
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.84 E-value=5.2e-09 Score=98.90 Aligned_cols=133 Identities=15% Similarity=0.185 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHH
Q 011133 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVAD 283 (493)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~ 283 (493)
..+++.+.|.+.|++. ...++.+.||||+||+++++++.+.+. ..+ ++++.... ..|...|+++|+
T Consensus 12 ~~~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~a~l~~~~~~---------~~~-av~~~~~~~~~~~~~~a~~~a~ 79 (249)
T 3fiu_A 12 YSQKLVNWLSDSCMNY--PAEGFVIGLSGGIDSAVAASLAVKTGL---------PTT-ALILPSDNNQHQDMQDALELIE 79 (249)
T ss_dssp HHHHHHHHHHHHHHTT--TCSEEEEECCSSHHHHHHHHHHHHTTS---------CEE-EEECCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEecCcHHHHHHHHHHHHhCC---------CCE-EEEecCCCCCHHHHHHHHHHHH
Confidence 3455666666666553 335689999999999999999998652 234 88876542 357889999999
Q ss_pred HhCCcceEEEeChhhhHHHHHHHHHhh-c---ccccccccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 011133 284 YLGTVHHEFHFTVQDGIDAIEEVIYHV-E---TYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (493)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~-~---~~~~~~~~~---~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~ 353 (493)
.+|++|+++.+++. .+.+.+.+... . .+...+..+ .+-+..+...|.+.|+.++-|| ..||.+.||.
T Consensus 80 ~lgi~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TG-n~sE~~~G~~ 153 (249)
T 3fiu_A 80 MLNIEHYTISIQPA--YEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTD-NACEWYMGYF 153 (249)
T ss_dssp HHTCEEEECCCHHH--HHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCC-CHHHHHHTCS
T ss_pred HhCCCEEEEEChHH--HHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECC-CHHHHhcCch
Confidence 99999998877532 22222211100 1 111000001 1122345566777899999999 5678887875
No 19
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=98.83 E-value=2.6e-09 Score=100.95 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhhcc--CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHH
Q 011133 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVA 282 (493)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va 282 (493)
.+++.+.+...+++.++. ..++.+.||||+||+++++++.+.. |.++.++++.... ..|...|+++|
T Consensus 6 ~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~---------g~~v~av~~~~~~~~~~~~~~a~~~a 76 (249)
T 3p52_A 6 WQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRAL---------KENVFALLMPTQISNKANLEDALRLC 76 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHH---------TTSEEEEECCSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHc---------CCcEEEEEecCCCCCHHHHHHHHHHH
Confidence 344455555555554433 4578999999999999999998875 3578899887653 35778999999
Q ss_pred HHhCCcceEEEeChhhhHHHHHHHHHhhcccccccccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 011133 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (493)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~ 353 (493)
+.+|++|+.+.+++ ..+.+ .....++......+ ..-+..+...|.+.|+.|+-||+ .||++-||.
T Consensus 77 ~~lgi~~~~v~i~~--~~~~~---~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn-~se~~~g~~ 144 (249)
T 3p52_A 77 ADLNLEYKIIEIQS--ILDAF---IKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSN-KSELLLGYG 144 (249)
T ss_dssp HHHTCEEEECCCHH--HHHHH---HTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHHHTCS
T ss_pred HHhCCCEEEEECcH--HHHHH---HHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCC-HHHHHccch
Confidence 99999998877653 22221 11111111100111 11223455667788887666655 566666664
No 20
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.79 E-value=1.9e-08 Score=94.23 Aligned_cols=158 Identities=17% Similarity=0.243 Sum_probs=93.5
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhCCc-ceEEEeCh-hhhHH
Q 011133 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTV-HHEFHFTV-QDGID 301 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg~~-~~~~~~~~-~~~~~ 301 (493)
.++.+++|||+||+++++++.+.. .++.++++.+.. ..|.+.|+++|+++|++ |+++.++. .++..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----------~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~ 72 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----------DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELAT 72 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSH
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----------CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhh
Confidence 368999999999999999998764 467788876543 35788999999999999 99988762 22211
Q ss_pred -HHHHH---H----HhhcccccccccchHHHH--HHHHHHHhCCCeEEEeccCccccccCCcccccCCChhHHhHHHHHH
Q 011133 302 -AIEEV---I----YHVETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHK 371 (493)
Q Consensus 302 -~l~~~---~----~~~~~~~~~~~~~~~~~~--~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~~~~~~e~~~~ 371 (493)
.+.+. + ...+....+........| ++...|.+.|++++++|+.+|+.. +|+.. +..| .+.
T Consensus 73 ~~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~-~~~~~-----r~~~----~~~ 142 (232)
T 2pg3_A 73 SSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFS-GYPDC-----RDEF----VKA 142 (232)
T ss_dssp HHHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSS-CCGGG-----SHHH----HHH
T ss_pred hhcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccC-CCCCC-----CHHH----HHH
Confidence 11110 0 000111111111111122 225667788999999999999875 45421 1122 222
Q ss_pred HHhhcccccccccccccccCceeccccCC---hHHHHHHHcCC
Q 011133 372 IKALHQYDCLRANKSTSAWGLEARVPFLD---KDFINVAMAID 411 (493)
Q Consensus 372 ~~~l~~~~l~r~dr~~~~~gie~r~PflD---~~lve~~~~lP 411 (493)
+..+... ++..++.+..|+++ .++++++..+-
T Consensus 143 ~~~~~~~--------~~~~~~~i~~PL~~~~K~ei~~~a~~~g 177 (232)
T 2pg3_A 143 LNQAIVL--------GIARDIRFETPLMWLNKAETWALADYYQ 177 (232)
T ss_dssp HHHHHHH--------HHTSCCEEECTTTTCCHHHHHHHHHHTT
T ss_pred HHHHHHH--------hCCCCeEEEEecCCCCHHHHHHHHHHcC
Confidence 2221110 11235678899988 34777766553
No 21
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.78 E-value=9.4e-09 Score=98.56 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=79.2
Q ss_pred HHHHHHHhhcc---CcceEEEecCCcchhHHHHHHHHHhccccccc-ccCCcceeeeeccCCCCcHHHHHHHHHHhCC-c
Q 011133 214 FENAVIKRLMT---DVPFGVLLSGGLDSSLVASITARHLAGTKAAR-QWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-V 288 (493)
Q Consensus 214 l~~aV~~rl~~---~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~-~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~-~ 288 (493)
+...++.+++. ...+.+.||||+||+++++++++....-+... ..+.++.++++.+....|...|+++|+.+|+ +
T Consensus 26 ~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~dA~~va~~lgi~~ 105 (275)
T 1wxi_A 26 SVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQPDR 105 (275)
T ss_dssp HHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHHHHHHHHHHcCCCe
Confidence 34444444433 33788999999999999999887642100000 0012678888776544588999999999999 8
Q ss_pred ceEEEeChhhhHHHHHHHHHhhc-ccccccccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011133 289 HHEFHFTVQDGIDAIEEVIYHVE-TYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~---~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
|+++.+++ ..+.+.+...... ++......+ -..+..+...|.+.|..|+ .+...+|.+.||..
T Consensus 106 ~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvl-gTgn~~E~~~Gy~t 172 (275)
T 1wxi_A 106 VLTVNIKG--AVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVV-GTDHAAEAITGFFT 172 (275)
T ss_dssp EEECCCHH--HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEB-CCCCHHHHTTTCSC
T ss_pred EEEEecHH--HHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEE-ECccHHHHccCccc
Confidence 88887753 2333322222211 111100111 1112234455666776555 44456788888854
No 22
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.67 E-value=7.9e-08 Score=94.42 Aligned_cols=125 Identities=10% Similarity=0.040 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHh--hccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCc-ceeeeeccCC----CCcHHHHHH
Q 011133 208 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQ-LHSFCVGLEG----SPDLKYAKE 280 (493)
Q Consensus 208 ~~l~~~l~~aV~~r--l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~-~~~~t~~~~~----~~d~~~A~~ 280 (493)
..+.+.+.+++++. +....+|.+++|||.||++++.++.+.... +|.+ +.++++...- ..|..++++
T Consensus 5 ~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~------~g~~~v~av~vd~g~r~~s~~~~~~v~~ 78 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY------FSLKEVALAHFNHMLRESAERDEEFCKE 78 (317)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT------TTCSEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH------cCCCEEEEEEEECCCCcccHHHHHHHHH
Confidence 35667777888775 456678999999999999999999875321 1346 7777775432 136788999
Q ss_pred HHHHhCCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHH-HHHHHHHhCCCeEEEeccCccc
Q 011133 281 VADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 281 va~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~g~~v~ltG~GgDe 347 (493)
+|+.+|++++.+.++...+.+. . .... ...+....| .+.+.+.+.|+++++||+.+|+
T Consensus 79 ~a~~lgi~~~v~~~~~~~~~~~-------~-~~~~-e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD 137 (317)
T 1wy5_A 79 FAKERNMKIFVGKEDVRAFAKE-------N-RMSL-EEAGRFLRYKFLKEILESEGFDCIATAHHLND 137 (317)
T ss_dssp HHHHHTCCEEEEECCHHHHHHH-------T-TCCH-HHHHHHHHHHHHHHHHHHTTCSEEECCCCHHH
T ss_pred HHHHcCCcEEEEEEechhhhcc-------C-CCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEeCchhH
Confidence 9999999999988865432111 0 0000 000111223 4556677889999999999885
No 23
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.66 E-value=3.2e-08 Score=96.63 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHH-HHHHh
Q 011133 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VADYL 285 (493)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~-va~~l 285 (493)
.+.+...+.+++.+. +.++.++||||+||+++++++.+.. |.++.++++... ...|...+++ +++++
T Consensus 5 ~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~---------g~~v~av~vd~g~~~~~e~~~~~~~~a~~l 74 (308)
T 2dpl_A 5 RFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAI---------GDRLHAVFVNTGFLRKGEPEFVVKTFRDEF 74 (308)
T ss_dssp HHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCCCTTHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhh---------CCCEEEEEEcCCCCChHHHHHHHHHHHHHc
Confidence 344455556666664 4689999999999999999998874 257888887543 3457777877 66789
Q ss_pred CCcceEEEeChhhhHHHHHHHHHhhcccccc-cccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011133 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVT-TIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
|++|+.+.++.. +.+.+.. ...|... .+........+.+.|++.|++.+++|+..|.+
T Consensus 75 gi~~~vv~~~~~-f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~ 133 (308)
T 2dpl_A 75 GMNLHYVDAQDR-FFSALKG----VTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDW 133 (308)
T ss_dssp CCEEEEEECHHH-HHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--
T ss_pred CCcEEEEECCHH-HHHhhhC----CCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccc
Confidence 999999887531 2221110 0011000 00001112244566777899999999998854
No 24
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.64 E-value=4.3e-08 Score=98.28 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=75.8
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC----------CCcHHHHHHHHHHhCCcceEEEe
Q 011133 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----------SPDLKYAKEVADYLGTVHHEFHF 294 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~----------~~d~~~A~~va~~lg~~~~~~~~ 294 (493)
..+|.+++|||+||+++++++.+.. .++.++++.... ..|...|+++|+.+|++|+.+.+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~ 78 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQG----------YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNF 78 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHcC----------CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 4579999999999999999998753 578888875431 13678899999999999999998
Q ss_pred Chhhh---HHHHHHHHHhhcccccccccchH-HHHHHHHHHHhCCCeEEEeccCccccc
Q 011133 295 TVQDG---IDAIEEVIYHVETYDVTTIRAST-PMFLMSRKIKSLGVKMVISGEGSDEIF 349 (493)
Q Consensus 295 ~~~~~---~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~g~~v~ltG~GgDelf 349 (493)
+.+.. ++.+.+......+|.+....+.. -+..+.+.|.+.|++.+.||+.+|...
T Consensus 79 ~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~ 137 (376)
T 2hma_A 79 EKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVAR 137 (376)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhh
Confidence 64321 11111111111223211111111 122456677889999999999999864
No 25
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.61 E-value=1.5e-07 Score=95.12 Aligned_cols=112 Identities=16% Similarity=0.142 Sum_probs=74.3
Q ss_pred cCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCc-ceEEEeChhhhHHH
Q 011133 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV-HHEFHFTVQDGIDA 302 (493)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~-~~~~~~~~~~~~~~ 302 (493)
+..+|++++|||+||++++.++.+.. ..+.++++.+....|.+.++++|+.+|++ ++.+.++ +++.+.
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~G----------~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~-~ef~~~ 72 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQG----------YDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS-REFVEE 72 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHTT----------EEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHH
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEeCh-HHHHHH
Confidence 34679999999999999999998752 57889998776567899999999999998 6666664 333322
Q ss_pred -HHHHHHhhccccc----c-cccchHHHHHHHHHHHhCCCeEEEeccCcc
Q 011133 303 -IEEVIYHVETYDV----T-TIRASTPMFLMSRKIKSLGVKMVISGEGSD 346 (493)
Q Consensus 303 -l~~~~~~~~~~~~----~-~~~~~~~~~~~~~~a~~~g~~v~ltG~GgD 346 (493)
+...+.....+.. . ..........+.+.|++.|++++++|+.++
T Consensus 73 ~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~ 122 (413)
T 2nz2_A 73 FIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGK 122 (413)
T ss_dssp THHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCc
Confidence 2222221111110 0 000011223456677788999999999883
No 26
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.60 E-value=1.7e-07 Score=94.47 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=73.6
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCC-cceEEEeChhhhHHH-HH
Q 011133 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-IE 304 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~-l~ 304 (493)
+|.+++|||+||++++.++.+.. |..+.++++......|.+.++++|+.+|+ +++++.+. +++.+. ..
T Consensus 2 kVvva~SGG~DSsvll~ll~~~~---------g~~V~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~-~ef~~~~~~ 71 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETY---------RAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLK-EEFVRDFVF 71 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHH---------TCEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECH-HHHHHHTHH
T ss_pred cEEEEEeChHHHHHHHHHHHHhh---------CCcEEEEEEeCCCHHHHHHHHHHHHHhCCCeEEEEeCc-HHHHHHhhH
Confidence 58899999999999999998763 35788888876556789999999999999 67777764 333322 11
Q ss_pred HHHHhhccc----cccc-ccchHHHHHHHHHHHhCCCeEEEeccCcc
Q 011133 305 EVIYHVETY----DVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSD 346 (493)
Q Consensus 305 ~~~~~~~~~----~~~~-~~~~~~~~~~~~~a~~~g~~v~ltG~GgD 346 (493)
..+.....+ .... .........+.+.|++.|++++++|+.+|
T Consensus 72 ~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 72 PMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 222211111 1000 00111123456777888999999999996
No 27
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.59 E-value=1.5e-07 Score=94.41 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=73.7
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCC-cceEEEeChhhhHHH-H
Q 011133 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-I 303 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~-l 303 (493)
.+|.+++|||+|||++++++.+.. ..|.++++......|.+.|+++|+.+|+ +|+++.+. +++.+. +
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~G----------~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvDl~-eef~~~v~ 83 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEKG----------FDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLR-REFVTDYI 83 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHHTH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCC----------CeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEecH-HHHHHhhh
Confidence 468999999999999999998763 6788999876555799999999999999 88988874 334332 1
Q ss_pred HHHHHhhcc----cccccc-cchHHHHHHHHHHHhCCCeEEEeccCc
Q 011133 304 EEVIYHVET----YDVTTI-RASTPMFLMSRKIKSLGVKMVISGEGS 345 (493)
Q Consensus 304 ~~~~~~~~~----~~~~~~-~~~~~~~~~~~~a~~~g~~v~ltG~Gg 345 (493)
...+..... +..... ......-.+.+.|.+.|++.+.+|..+
T Consensus 84 ~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~ 130 (421)
T 1vl2_A 84 FTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATG 130 (421)
T ss_dssp HHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred hHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCee
Confidence 122211111 110000 011112235566788899999999987
No 28
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.53 E-value=1.5e-07 Score=94.29 Aligned_cols=113 Identities=22% Similarity=0.226 Sum_probs=73.6
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC----------CCcHHHHHHHHHHhCCcceEEEe
Q 011133 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----------SPDLKYAKEVADYLGTVHHEFHF 294 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~----------~~d~~~A~~va~~lg~~~~~~~~ 294 (493)
..+|.+++|||+||+++++++.+. |.++.++++.... ..|...|+++|+.+|++|+.+.+
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~~----------G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~ 86 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQQ----------GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNF 86 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHTT----------CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHc----------CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 457999999999999999999875 3678888875421 13678899999999999999987
Q ss_pred ChhhhHHHH-HHHH---HhhcccccccccchH-HHHHHHHHHHh-CCCeEEEeccCcccc
Q 011133 295 TVQDGIDAI-EEVI---YHVETYDVTTIRAST-PMFLMSRKIKS-LGVKMVISGEGSDEI 348 (493)
Q Consensus 295 ~~~~~~~~l-~~~~---~~~~~~~~~~~~~~~-~~~~~~~~a~~-~g~~v~ltG~GgDel 348 (493)
+.+ +.+.+ ...+ ....++++....+.. -+-.+.+.|.+ .|++.+.||+.+|..
T Consensus 87 ~~~-f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~ 145 (380)
T 2der_A 87 AAE-YWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRA 145 (380)
T ss_dssp HHH-HHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEE
T ss_pred cHH-HHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccc
Confidence 632 22211 1111 111223211111111 11244566677 899999999999864
No 29
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.51 E-value=3.2e-08 Score=106.66 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhccC--cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC--CcHHHHHHHH
Q 011133 207 PLVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVA 282 (493)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~va 282 (493)
.+++.+.+...++++++.. ..+.+.||||+||++.+.++++....-+. .+.++.++++..... .+...|+++|
T Consensus 341 ~~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~---~~~~v~~v~m~~~~~~~~~~~~A~~la 417 (680)
T 3sdb_A 341 CYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGR---PRSDILAFALPGFATGEHTKNNAIKLA 417 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTC---CGGGEEEEECCC--------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCC---CCceEEEEEECCCCCCHHHHHHHHHHH
Confidence 3566677777787777654 46889999999999866666654311000 014688888875432 4677899999
Q ss_pred HHhCCcceEEEeCh
Q 011133 283 DYLGTVHHEFHFTV 296 (493)
Q Consensus 283 ~~lg~~~~~~~~~~ 296 (493)
+.+|++|+++.+++
T Consensus 418 ~~lgi~~~~i~i~~ 431 (680)
T 3sdb_A 418 RALGVTFSEIDIGD 431 (680)
T ss_dssp HHHTCEEEECCCHH
T ss_pred HHcCCCEEEEECHH
Confidence 99999999888753
No 30
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.48 E-value=1.1e-07 Score=90.79 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=54.3
Q ss_pred HHHHHhhcc--CcceEEEecCCcchhHHHHHHHHHhcccccc-cccCCcceeeeeccCCCCcHHHHHHHHHHhCC-cceE
Q 011133 216 NAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAA-RQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHE 291 (493)
Q Consensus 216 ~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~-~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~-~~~~ 291 (493)
+.++.+++. ...+.+.||||+||+++++++++....-+.. ...+..+.++++.+....+...|+++|+.+|+ +|++
T Consensus 29 ~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~~~~~~A~~~a~~lgi~~~~~ 108 (279)
T 3q4g_A 29 AFIKRKLTEARYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQKDEDEAQLALSFIRPTHSVS 108 (279)
T ss_dssp HHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSCSCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCChHHHHHHHHHHHHhCCCeEEE
Confidence 444444432 2468899999999999999876542110000 00013677888776555678999999999999 7888
Q ss_pred EEeCh
Q 011133 292 FHFTV 296 (493)
Q Consensus 292 ~~~~~ 296 (493)
+++++
T Consensus 109 i~i~~ 113 (279)
T 3q4g_A 109 VNIKA 113 (279)
T ss_dssp CCCHH
T ss_pred EECHH
Confidence 87753
No 31
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.35 E-value=5.7e-07 Score=91.22 Aligned_cols=113 Identities=19% Similarity=0.141 Sum_probs=74.7
Q ss_pred hhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhCC-cceEEEeChh
Q 011133 221 RLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQ 297 (493)
Q Consensus 221 rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg~-~~~~~~~~~~ 297 (493)
.+....+|.+++|||+||++++.++.+. |..|.++++.... ..|.+.|+++|+.+|+ +|+++.+. +
T Consensus 6 ~l~~~~KVvVA~SGGlDSSvll~~L~e~----------G~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~-e 74 (455)
T 1k92_A 6 HLPVGQRIGIAFSGGLDTSAALLWMRQK----------GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCR-K 74 (455)
T ss_dssp SCCTTSEEEEECCSSHHHHHHHHHHHHT----------TCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECH-H
T ss_pred hhcCCCeEEEEEcChHHHHHHHHHHHHc----------CCEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeCh-H
Confidence 4556678999999999999999999875 2578888876543 3588999999999999 88888875 3
Q ss_pred hhHHHHHHHHHhhccc--ccc-cccchHH------HHHHHHHHHhCCCeEEEeccC
Q 011133 298 DGIDAIEEVIYHVETY--DVT-TIRASTP------MFLMSRKIKSLGVKMVISGEG 344 (493)
Q Consensus 298 ~~~~~l~~~~~~~~~~--~~~-~~~~~~~------~~~~~~~a~~~g~~v~ltG~G 344 (493)
++.+..-..+.....+ ... +.....+ .-.+.+.|++.|++.+.+|+.
T Consensus 75 ef~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht 130 (455)
T 1k92_A 75 QLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGST 130 (455)
T ss_dssp HHHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 3433211222211111 000 0111111 224566778899999999995
No 32
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.31 E-value=1.4e-06 Score=89.98 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=78.1
Q ss_pred HHHHHHHh--hccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC-----CcHHHHHHHHHHhC
Q 011133 214 FENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYAKEVADYLG 286 (493)
Q Consensus 214 l~~aV~~r--l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~-----~d~~~A~~va~~lg 286 (493)
+.+.+++. +....++.|++|||.||++++.++++..... +..+.++++...-. .|...++++|+.+|
T Consensus 5 v~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~------~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg 78 (464)
T 3a2k_A 5 VRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW------KLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR 78 (464)
T ss_dssp HHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT------TCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc------CCeEEEEEEECCCCccccHHHHHHHHHHHHHcC
Confidence 44555553 4566789999999999999999998754321 35777777754322 36678999999999
Q ss_pred CcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHH-HHHHHHHhCCCeEEEeccCccc
Q 011133 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~g~~v~ltG~GgDe 347 (493)
++++.+.++...+.+. ..... ........| .+.+.+.+.|+.+++||+.+|.
T Consensus 79 i~~~v~~~~~~~~~~~--------~~~~~-e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD 131 (464)
T 3a2k_A 79 ILCETAQIDVPAFQRS--------AGLGA-QEAARICRYRFFAELMEKHQAGYVAVGHHGDD 131 (464)
T ss_dssp CEEEEEECCCHHHHTT--------TTCCS-HHHHHHHHHHHHHHHHHTTTCCEEECCCCHHH
T ss_pred CcEEEEEechhhhhhc--------cCCCH-HHHHHHHHHHHHHHHHHHcCcCEEEEeCChHH
Confidence 9999988764322110 00000 000011122 4456677889999999999885
No 33
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.23 E-value=2.2e-06 Score=89.73 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeecc--CCCCcHHHHHH-HHHH
Q 011133 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKE-VADY 284 (493)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~--~~~~d~~~A~~-va~~ 284 (493)
+.+.+.+.+.+++.+.. .++.++||||+||+++++++++.. |.++.++++.. ....|...+.+ +|+.
T Consensus 214 ~~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~---------G~~v~av~vd~g~~~~~e~~~~~~~~a~~ 283 (527)
T 3tqi_A 214 KHIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAI---------GDQLVCVLVDTGLLRLNEVDEVLNVFQKH 283 (527)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHH---------GGGEEEEEECCSCSCTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHh---------CCeEEEEEeccCCCChhHHHHHHHHHHHH
Confidence 34444445556666644 779999999999999999999874 35788888743 33457777765 9999
Q ss_pred hCCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHH-HHHHHHHhCCCeEEEeccCccccc
Q 011133 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIF 349 (493)
Q Consensus 285 lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~g~~v~ltG~GgDelf 349 (493)
+|++++.+.++.. +.+.+.. ...+........-.++ .+.+.|++.|++.+++|+..|.+.
T Consensus 284 lgi~~~vv~~~~~-~~~~l~g----~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~ 344 (527)
T 3tqi_A 284 LGAKVICVDAKDR-FMKALKG----ISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVI 344 (527)
T ss_dssp SCCEEEEECCHHH-HHSSSSS----CCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHH
T ss_pred cCCcEEEEeChHH-HHHhhcC----CCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccc
Confidence 9999998876422 1111000 0000000000000122 233556778999999999887764
No 34
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.22 E-value=1.6e-06 Score=90.93 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHH-HHH
Q 011133 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VAD 283 (493)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~-va~ 283 (493)
.+.+.+.+.+.+++.+.. .++.++||||+||+++++++++.. |.++.++++... ...|.+.+++ +|+
T Consensus 210 ~~~~~~~~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a~---------G~~v~av~v~~g~~~~~e~~~~~~~la~ 279 (525)
T 1gpm_A 210 PAKIIDDAVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRAI---------GKNLTCVFVDNGLLRLNEAEQVLDMFGD 279 (525)
T ss_dssp HHHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCSCTTHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHHh---------CCCEEEEEEeCCCCCchHHHHHHHHHHH
Confidence 345555566666666644 689999999999999999999874 257888887643 2356777755 899
Q ss_pred HhCCcceEEEeChhhhHHHHHHHHHhhccccccc-ccchHHHHHHHHHHHhC-CCeEEEeccCcc
Q 011133 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTT-IRASTPMFLMSRKIKSL-GVKMVISGEGSD 346 (493)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~-g~~v~ltG~GgD 346 (493)
++|++++.+.++. .+.+.+.. ...+.... +........+.+.|++. |++.+++|+..|
T Consensus 280 ~lgi~~~~v~~~~-~f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~ 339 (525)
T 1gpm_A 280 HFGLNIVHVPAED-RFLSALAG----ENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYP 339 (525)
T ss_dssp TTCCCEEEEECHH-HHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHH
T ss_pred HhCCcEEEEeccH-HHHHhhcC----CCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCc
Confidence 9999999988753 22222211 11111000 00001112344557777 899999999644
No 35
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=98.18 E-value=1.4e-06 Score=83.20 Aligned_cols=133 Identities=16% Similarity=0.120 Sum_probs=74.1
Q ss_pred HHHHHHHHhhcc--CcceEEEecCCcchhHHHHHHHHH---hcccccccccCC--cceeeeeccCCCCcHHHHHHHHHHh
Q 011133 213 AFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARH---LAGTKAARQWGT--QLHSFCVGLEGSPDLKYAKEVADYL 285 (493)
Q Consensus 213 ~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~---~~~~~~~~~~~~--~~~~~t~~~~~~~d~~~A~~va~~l 285 (493)
.+.+.++.++.. ...+.+.||||+||+++++++++. +... +. .+.++++.+....|...|+++|+.+
T Consensus 32 ~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~------~~~~~viav~~p~~~~~~~~dA~~~a~~l 105 (285)
T 3dpi_A 32 RRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRAS------GYDARFVAMRLPYGAQHDEADARRALAFV 105 (285)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHT------TCCCEEEEEECCSCC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhccc------CcccEEEEEEcCCCCHHHHHHHHHHHHHc
Confidence 333556666543 356889999999999998776653 2111 12 4667776654445678899999999
Q ss_pred C-CcceEEEeChhhhHHHHHHHHHhh-ccc-----cc---ccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011133 286 G-TVHHEFHFTVQDGIDAIEEVIYHV-ETY-----DV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 286 g-~~~~~~~~~~~~~~~~l~~~~~~~-~~~-----~~---~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
| ++|+++++++ ..+.+.+.+... .++ .. ..+..-+-+-.++..|.+.|.-|+-||+- .|++-||..
T Consensus 106 g~i~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~-sE~~~Gy~T 181 (285)
T 3dpi_A 106 RADETLTVDVKP--AADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHA-AESVMGFFT 181 (285)
T ss_dssp CCSEEEECCCHH--HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHHHHHHHH
T ss_pred CCCcEEEEEChH--HHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccH-HhhhCCccc
Confidence 9 6888887753 223222222110 011 00 00111122334556677778755556554 456667643
No 36
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.15 E-value=4.4e-06 Score=87.12 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHHHHHh
Q 011133 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYL 285 (493)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~va~~l 285 (493)
+.+.+...+.+++.+.. .++.+++|||+||+++++++++.. .++.++++... ...|.+.++++|+.+
T Consensus 193 ~~~~~~~i~~ir~~~~~-~kvvvalSGGvDSsvla~ll~~~g----------~~v~av~vd~g~~~~~e~~~v~~~~~~l 261 (503)
T 2ywb_A 193 EHVLEELLREVRERAGK-DRVLLAVSGGVDSSTLALLLAKAG----------VDHLAVFVDHGLLRLGEREEVEGALRAL 261 (503)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEEECSSHHHHHHHHHHHHHT----------CEEEEEEEECSCSCTTHHHHHHHHHHHT
T ss_pred hhhhHHHHHhhhhhccC-ccEEEEecCCcchHHHHHHHHHcC----------CeEEEEEEeCCCCChHHHHHHHHHHHHh
Confidence 33444444555555544 579999999999999999998862 57888887543 346788999999999
Q ss_pred CCcceEEEeChhhhHHHHHHHHHhhcccccc-cccchHHHHHHHHHHHhC-CCeEEEeccCccc
Q 011133 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVT-TIRASTPMFLMSRKIKSL-GVKMVISGEGSDE 347 (493)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~-g~~v~ltG~GgDe 347 (493)
|++++.+.++. .+.+.+. ....+... .+........+.+.|++. |++.+++|+..|.
T Consensus 262 gi~~~vv~~~~-~f~~~l~----g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D 320 (503)
T 2ywb_A 262 GVNLLVVDAKE-RFLKALK----GVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPD 320 (503)
T ss_dssp TCCEEEEECHH-HHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHH
T ss_pred CCCEEEEECcH-HHHHhhc----CCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCcc
Confidence 99999988753 2222111 00011000 000000111234456666 8999999997654
No 37
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.14 E-value=3.3e-06 Score=77.90 Aligned_cols=118 Identities=10% Similarity=0.041 Sum_probs=71.6
Q ss_pred HHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhCCcce
Q 011133 213 AFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHH 290 (493)
Q Consensus 213 ~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg~~~~ 290 (493)
.+..+++.. +.+|.|.+|||.||++++.++.+.. .++.++++...- ..+..+++++|+.+|++++
T Consensus 35 ~l~~~~~~~---~~~v~Va~SGGkDS~vLL~ll~~~~----------~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~ 101 (215)
T 1sur_A 35 RVAWALDNL---PGEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLK 101 (215)
T ss_dssp HHHHHHHHC---CSEEEEECCCCTTHHHHHHHHHHHS----------TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHc---CCCEEEEecCCHHHHHHHHHHHHhC----------CCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 444444432 2479999999999999999998874 466677665432 2356789999999999999
Q ss_pred EEEeChhhhHHHHHHHHHhhcccccc-cccchHH----HHHHHHHHHhCCCeEEEeccCccc
Q 011133 291 EFHFTVQDGIDAIEEVIYHVETYDVT-TIRASTP----MFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~----~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
.+..... ......+ ....+... ....... ...+.+.+++.|+.++++|.-.|+
T Consensus 102 v~~~~~~-~~~~~~~---~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd 159 (215)
T 1sur_A 102 VYRATES-AAWQEAR---YGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 159 (215)
T ss_dssp EEECSSC-HHHHHHH---HCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTS
T ss_pred EEeCCCC-HHHHHHh---cCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhh
Confidence 8876532 1111111 01101000 0000000 012344566778889999999988
No 38
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.09 E-value=6.2e-06 Score=88.35 Aligned_cols=90 Identities=21% Similarity=0.195 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhhcc--CcceEEEecCCcchhHHHHHHH-------HHhccccccccc------------CC-----
Q 011133 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITA-------RHLAGTKAARQW------------GT----- 260 (493)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~-------~~~~~~~~~~~~------------~~----- 260 (493)
.+++...+...++++++. ...+.+.||||+|||++|++++ +.+..++..... ..
T Consensus 283 ~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 362 (634)
T 3ilv_A 283 EFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQ 362 (634)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccc
Confidence 456666666666666643 3568899999999999998833 333211000000 00
Q ss_pred -------cceeeeeccCCC--CcHHHHHHHHHHhCCcceEEEeCh
Q 011133 261 -------QLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFTV 296 (493)
Q Consensus 261 -------~~~~~t~~~~~~--~d~~~A~~va~~lg~~~~~~~~~~ 296 (493)
-++++.++...+ .+...|+++|+.+|++|+++.+.+
T Consensus 363 ~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~ 407 (634)
T 3ilv_A 363 AKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDE 407 (634)
T ss_dssp HHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred hhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHH
Confidence 055666665443 356789999999999999988853
No 39
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.06 E-value=2.8e-05 Score=83.62 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccC-CcceeeeeccC--CCCcHHHHHHHHH
Q 011133 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWG-TQLHSFCVGLE--GSPDLKYAKEVAD 283 (493)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~-~~~~~~t~~~~--~~~d~~~A~~va~ 283 (493)
.+.+.+.+.+.+++.+. +.++.+.||||+||+++++++.+.. | .++.++++... ...|.+.|+++|+
T Consensus 223 ~~~~~~~~i~~Ir~~v~-~~~vvv~lSGGvDSsVla~Ll~~al---------G~~~V~aV~vd~g~~~~~e~e~a~~~a~ 292 (697)
T 2vxo_A 223 VQNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLNRAL---------NQEQVIAVHIDNGFMRKRESQSVEEALK 292 (697)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHHHHS---------CGGGEEEEEEECSCCCSSTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc-ccceEEEccCchHHHHHHHHHHHhc---------CCceEEEEEeccccCCcchHHHHHHHHH
Confidence 34555666667777664 4689999999999999999999875 3 47888887654 3467899999999
Q ss_pred HhCCcceEEEeC
Q 011133 284 YLGTVHHEFHFT 295 (493)
Q Consensus 284 ~lg~~~~~~~~~ 295 (493)
.+|++++.+.++
T Consensus 293 ~lGI~~~vvdi~ 304 (697)
T 2vxo_A 293 KLGIQVKVINAA 304 (697)
T ss_dssp HTTCCEEEEECH
T ss_pred HhCCcEEEecch
Confidence 999999998875
No 40
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.03 E-value=7.2e-06 Score=83.25 Aligned_cols=108 Identities=20% Similarity=0.248 Sum_probs=69.8
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CC-CcHHHHHHHHHHh-----CCcceEEEeCh
Q 011133 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GS-PDLKYAKEVADYL-----GTVHHEFHFTV 296 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~-~d~~~A~~va~~l-----g~~~~~~~~~~ 296 (493)
..++.+++|||+||++++.++.+. |.++.++++... .+ .+...++++|+.+ |++++.+.++.
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~~----------G~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~ 256 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMKR----------GVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTE 256 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHHB----------TEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHH
T ss_pred CCeEEEEeCCCChHHHHHHHHHHc----------CCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcH
Confidence 356889999999999999999874 357888887643 22 3557788889888 89999888753
Q ss_pred hhhHHHHHHHHHhhcccccccccchHHHH-HHHHHHHhCCCeEEEeccCcccc
Q 011133 297 QDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~g~~v~ltG~GgDel 348 (493)
.. ..+. ... +....+...--.++ .+.+.|.+.|+..++||+..|.+
T Consensus 257 ~~--~~i~---~~~-~~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ 303 (413)
T 2c5s_A 257 VQ--KTIN---KEI-PSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQV 303 (413)
T ss_dssp HH--HHHH---HHS-CGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSST
T ss_pred HH--HHHH---hcC-CcccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhh
Confidence 21 1111 111 10000010111223 33466778899999999998865
No 41
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=98.00 E-value=1.6e-05 Score=81.27 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=71.1
Q ss_pred HHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC----CcHHHHHHHHHHhCCcceEEE
Q 011133 218 VIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS----PDLKYAKEVADYLGTVHHEFH 293 (493)
Q Consensus 218 V~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~----~d~~~A~~va~~lg~~~~~~~ 293 (493)
+.+.+....+|.|++|||.||++++.++.+..... .|.++.++++...-. .|...++++|+.+|++++.+.
T Consensus 6 l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-----~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-----PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp HHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-----TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-----CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 44455667789999999999999999998764320 135677777754321 256789999999999999887
Q ss_pred eChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 011133 294 FTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 294 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
++.... ...+. .......|.+...+.+ ++++++||+.+|.
T Consensus 81 ~~~~~~----------~~~~e---~~aR~~Ry~~l~~~a~-~~~~i~tgH~~dD 120 (433)
T 1ni5_A 81 VQLAQE----------GLGIE---AQARQARYQAFARTLL-PGEVLVTAQHLDD 120 (433)
T ss_dssp CCCCCS----------SSTTT---THHHHHHHHHHHHTCC-TTEEEECCCCHHH
T ss_pred ecCCCC----------CCCHH---HHHHHHHHHHHHHHHh-hCCeEEeeccchH
Confidence 753200 00000 0001123333333333 4899999999885
No 42
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.90 E-value=1.9e-05 Score=83.14 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeecc--CCCCcHHHH-HHHHHH
Q 011133 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYA-KEVADY 284 (493)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~--~~~~d~~~A-~~va~~ 284 (493)
+.+.+...+.+++. ..+.++.++||||+||+++++++++.. |.++.++++.. ....|...+ +.+|++
T Consensus 239 ~~~~~~~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~---------G~~v~~v~vd~g~~~~~e~~~~~~~~~~~ 308 (556)
T 3uow_A 239 IRYHELELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIF---------KERFFGIFIDNGLLRKNEAENVYTFLKST 308 (556)
T ss_dssp HHHHHHHHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCSCTTHHHHHHHHHHHH
T ss_pred ccccccceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHh---------CCeEEEEEEecCCCChHHHHHHHHHHHHh
Confidence 44444455556555 436789999999999999999998865 35788888754 334566666 569999
Q ss_pred h-CCcceEEEeC
Q 011133 285 L-GTVHHEFHFT 295 (493)
Q Consensus 285 l-g~~~~~~~~~ 295 (493)
+ |++|+.+.++
T Consensus 309 l~gi~~~~vd~~ 320 (556)
T 3uow_A 309 FPDMNITKIDAS 320 (556)
T ss_dssp CTTSEEEEEECH
T ss_pred cCCCCeEEeccH
Confidence 9 9999998875
No 43
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=97.90 E-value=5.8e-05 Score=79.58 Aligned_cols=139 Identities=18% Similarity=0.166 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHHHhhccC--cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCc--HHHHHHH
Q 011133 206 DPLVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD--LKYAKEV 281 (493)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d--~~~A~~v 281 (493)
..+++.+.+.-.++++++.. ..+.+.||||+||++++++|.+.+.. .+|.++++....+.+ ...|+.+
T Consensus 279 ~~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~--------~~v~~v~mp~~~ts~~t~~~a~~l 350 (565)
T 4f4h_A 279 VEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGA--------ERVRAVMMPSRYTAGISTTDAADM 350 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCC--------ccEEEEeccccccccchHHHHHHH
Confidence 34567777777788777643 46789999999999999999888743 478899987665554 4679999
Q ss_pred HHHhCCcceEEEeChhhhHHHHHHHHHhh-cc-ccccccc---chHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 011133 282 ADYLGTVHHEFHFTVQDGIDAIEEVIYHV-ET-YDVTTIR---ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (493)
Q Consensus 282 a~~lg~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~ 355 (493)
|+.+|+.|+++.+++ ..+.+...+.+. .. ....+.. +-..+-.++..+.+.|.=|+=|| .-+|+--||..+
T Consensus 351 a~~lg~~~~~i~i~~--~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTg-n~sE~a~Gy~T~ 426 (565)
T 4f4h_A 351 ARRVGVRYDEIAIAP--MFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTG-NKSEMAVGYCTL 426 (565)
T ss_dssp HHHHTCEEEECCCHH--HHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECC-CHHHHHHTCSCT
T ss_pred HHHhCCceeeeecch--HHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCC-chhhHhhccccc
Confidence 999999999988753 333333322211 11 0000111 11223345555666676566666 455677787543
No 44
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.79 E-value=1.9e-05 Score=74.69 Aligned_cols=108 Identities=11% Similarity=0.072 Sum_probs=66.0
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHHHHHhCCcceEEEeChhhhHHHH
Q 011133 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (493)
.++.+.+|||.||++++.++.+.. .++..+++... ...+..+++++++.+|++++.+..... ....
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----------~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~~~--~~~~ 113 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES--AAWQ 113 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----------TTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSC--HHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----------CCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCCC--HHHH
Confidence 479999999999999999998875 45666666443 223568899999999999877665421 1111
Q ss_pred HHHHHhhccccc-ccccchHH----HHHHHHHHHhCCCeEEEeccCccc
Q 011133 304 EEVIYHVETYDV-TTIRASTP----MFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 304 ~~~~~~~~~~~~-~~~~~~~~----~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
.. .....+.. +..+.... ...+.+.+++.++.+++||.-.|+
T Consensus 114 ~~--~~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dd 160 (252)
T 2o8v_A 114 EA--RYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 160 (252)
T ss_dssp HH--HTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTT
T ss_pred HH--HcCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEeccccc
Confidence 11 00000000 00000000 012335566778889999999988
No 45
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.75 E-value=6.8e-05 Score=73.37 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=66.6
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHHHHHhCCcceEEEeChhhhHHH
Q 011133 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (493)
..++.+++|||.||++++.++.+..... +.++..+++... ......+++++|+.+|++++.+..... ..
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~------~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~--~~- 116 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPG------KLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDG--VA- 116 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTS------CCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC--------
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhcccc------CCCEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCchH--Hh-
Confidence 3478999999999999999999875321 135666766433 223568899999999999887764321 10
Q ss_pred HHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 011133 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (493)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelf 349 (493)
.-.. .............-...+.+.+++.|++++++|.-.||--
T Consensus 117 --~G~~-~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~ 160 (325)
T 1zun_A 117 --QGIN-PFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK 160 (325)
T ss_dssp ------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSG
T ss_pred --cCCC-ccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhh
Confidence 0000 0000000000000011244455566899999999999853
No 46
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.69 E-value=9.5e-05 Score=70.17 Aligned_cols=113 Identities=10% Similarity=0.026 Sum_probs=67.5
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeecc--CCCCcHHHHHHHHHHhCC----cceEEEeChhhh
Q 011133 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGT----VHHEFHFTVQDG 299 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~--~~~~d~~~A~~va~~lg~----~~~~~~~~~~~~ 299 (493)
.++.+.+|||.||++++.++.+.... +.++..+++.. .......+++++++.+|+ +++.+......-
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-------~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~~~~~ 114 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-------YYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCES 114 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-------SCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTCSS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-------CCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecCCccC
Confidence 37999999999999999999987631 02566666643 222357889999999999 888776542100
Q ss_pred HHHHHHH----HHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011133 300 IDAIEEV----IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 300 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
...+.+. .+... +. ......-...+.+.+++.|++++++|.-.||-
T Consensus 115 ~~~~~~~~G~~~~~~~-~~--~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds 164 (261)
T 2oq2_A 115 EADFASKYGDFLWEKD-DD--KYDYLAKVEPAHRAYKELHISAVFTGRRKSQG 164 (261)
T ss_dssp HHHHHHHHCTTHHHHC-HH--HHHHHHTHHHHHHHHHHTTCSEEECCCCGGGC
T ss_pred HHHHHHHhCCCccccC-hH--HHHHHHhHHHHHHHHHHcCCCEEEEeccccch
Confidence 1111110 11000 00 00000001123345667789999999999984
No 47
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.42 E-value=0.0002 Score=69.51 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=58.3
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHh-------CCcceEEE-eChh
Q 011133 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYL-------GTVHHEFH-FTVQ 297 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~l-------g~~~~~~~-~~~~ 297 (493)
.++.++||| +||++.++++.+. |..+.++++.+ +..+...|+++|+.+ +++++.++ +..
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~----------G~~v~~v~~~~-~~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~~~~- 246 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKR----------GVEVIPVYIGK-DDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDR- 246 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHB----------TCEEEEEEESC-SSHHHHHHHHHHHHHHTTCTTSCCCCEEESSHHH-
T ss_pred CcEEEEEeC-CcHHHHHHHHHhC----------CCeEEEEEEEE-CHHHHHHHHHHHHHHhhhccCCCCcEEEeCCCHH-
Confidence 468899999 9999999988875 36788888772 234567789999988 66666554 310
Q ss_pred hhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 011133 298 DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 298 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
. + +.|.+.|++.+.||+.++.
T Consensus 247 ----~----------------------~---~~A~~~ga~~I~tG~~~~~ 267 (307)
T 1vbk_A 247 ----V----------------------L---KLIRDFGVKGVIKGLRPND 267 (307)
T ss_dssp ----H----------------------H---HHHHHHTCCEEECCCCGGG
T ss_pred ----H----------------------H---HHHHHcCCCEEEECcccch
Confidence 0 0 4456679999999998754
No 48
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.37 E-value=0.00021 Score=66.17 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=44.8
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--------CCcHHHHHHHHHHhCCcceEEEeCh
Q 011133 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--------SPDLKYAKEVADYLGTVHHEFHFTV 296 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--------~~d~~~A~~va~~lg~~~~~~~~~~ 296 (493)
++.+++|||.||++.++++.+.. ..+.++...++. ..+.+.|+++|+.+|++++.+.++.
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G----------~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNR----------FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred EEEEEecCcHHHHHHHHHHHHcC----------CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 68899999999999998887653 566655432221 2456789999999999999988764
No 49
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=96.83 E-value=0.0045 Score=58.98 Aligned_cols=59 Identities=8% Similarity=0.166 Sum_probs=46.2
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHHHHHhCCcceEEEeC
Q 011133 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFT 295 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~va~~lg~~~~~~~~~ 295 (493)
.++.+.+| |.||++++.++.+.. .++..+++... ......+++++++.+|++++.+...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~----------~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~ 115 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLN----------RNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPD 115 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHC----------TTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCC
T ss_pred CCEEEEee-cHHHHHHHHHHHHhC----------CCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCC
Confidence 57999999 999999999998863 45666666443 2235688999999999998877654
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0069 Score=58.57 Aligned_cols=69 Identities=12% Similarity=-0.018 Sum_probs=45.5
Q ss_pred cceEEEecCCcchhHHHHHHHHHhccc----------ccc--cccCCcceeeeeccCC-C-CcHHHHHHHHHHhCCcceE
Q 011133 226 VPFGVLLSGGLDSSLVASITARHLAGT----------KAA--RQWGTQLHSFCVGLEG-S-PDLKYAKEVADYLGTVHHE 291 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~----------~~~--~~~~~~~~~~t~~~~~-~-~d~~~A~~va~~lg~~~~~ 291 (493)
.++.+.+|||.||++++.++.+.+... +.. +..+.++.++++.... . ...++++++++.+|++++.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v 133 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSLYE 133 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 479999999999999999988763110 000 0001356666664322 2 3568899999999998766
Q ss_pred EEe
Q 011133 292 FHF 294 (493)
Q Consensus 292 ~~~ 294 (493)
+..
T Consensus 134 ~~~ 136 (306)
T 2wsi_A 134 SQR 136 (306)
T ss_dssp CCC
T ss_pred EeC
Confidence 543
No 51
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=92.85 E-value=0.14 Score=49.00 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=39.9
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcc-----cccc------ccc-CCcceeeeeccCC-CCc-HHHHHHHHHHhCCcceE
Q 011133 226 VPFGVLLSGGLDSSLVASITARHLAG-----TKAA------RQW-GTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHE 291 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~-----~~~~------~~~-~~~~~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~ 291 (493)
..+++.+|||.||++++.++.+.+.. .+.. ... ..++..+.+.... .+| .++..++++.+|++.+.
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v 138 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYE 138 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEE
Confidence 35999999999999999998876410 0000 000 0245555554321 244 47889999999986444
No 52
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=24.99 E-value=65 Score=37.38 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=24.5
Q ss_pred EEEEEEEcCCCCch-HHHHHHHHHHHhhhccC
Q 011133 2 CGILAVLGCSDDSQ-AKRVRVLELSRRLKHRG 32 (493)
Q Consensus 2 cGI~G~~~~~~~~~-~~~~~~~~~~~~l~~RG 32 (493)
|||.++.+.++... ...+....++..|.|||
T Consensus 1 CGvg~va~~~G~~sh~iv~~al~~L~~m~HRG 32 (1520)
T 1ofd_A 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRG 32 (1520)
T ss_dssp CEEEEEECSSSCCBSHHHHHHHHHHHHTGGGS
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccC
Confidence 99999999887543 34556678889999999
No 53
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=23.63 E-value=62 Score=37.39 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=28.7
Q ss_pred EEEEEEEcCCCCch-HHHHHHHHHHHhhhccCC--------CCCceE
Q 011133 2 CGILAVLGCSDDSQ-AKRVRVLELSRRLKHRGP--------DWSGLY 39 (493)
Q Consensus 2 cGI~G~~~~~~~~~-~~~~~~~~~~~~l~~RGp--------d~~g~~ 39 (493)
|||.++.+.++... ...+....++..|.|||- |++|+.
T Consensus 1 CGvg~va~~~G~~sh~~v~~al~aL~~m~HRG~~~ad~~tGDGaGil 47 (1479)
T 1ea0_A 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGAVDADGKTGDGAGIH 47 (1479)
T ss_dssp CEECEEEETTCCCBHHHHHHHHHHHTSCGGGSCCCTTSSCCSCBCEE
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccCccCCCCCCCCceeee
Confidence 99999999887553 244566678899999986 566665
No 54
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=22.18 E-value=2.8e+02 Score=24.68 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHHHhhccCcceEEEecCCc
Q 011133 204 PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGL 236 (493)
Q Consensus 204 ~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGl 236 (493)
++..+...+.+.+.++..+....+..+.||||-
T Consensus 23 ~~l~~~aA~~i~~~i~~~~~~~~~~~l~LsgGs 55 (232)
T 1vl1_A 23 DGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGR 55 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCSCEEEEECCST
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCCc
Confidence 334455555555555555555566789999994
Done!