Query 011136
Match_columns 493
No_of_seqs 340 out of 1820
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:31:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02520 bifunctional 3-dehydr 100.0 1E-100 3E-105 827.9 46.6 467 9-487 8-474 (529)
2 PRK09310 aroDE bifunctional 3- 100.0 2.4E-88 5.3E-93 724.5 44.2 401 25-463 1-403 (477)
3 PRK02412 aroD 3-dehydroquinate 100.0 1.2E-52 2.6E-57 415.3 25.9 235 12-248 4-250 (253)
4 COG0169 AroE Shikimate 5-dehyd 100.0 3E-51 6.5E-56 408.4 21.8 220 249-486 2-224 (283)
5 TIGR01093 aroD 3-dehydroquinat 100.0 7.9E-51 1.7E-55 396.8 23.5 217 25-244 1-228 (228)
6 PF01487 DHquinase_I: Type I 3 100.0 1.1E-50 2.3E-55 394.8 20.4 217 27-245 1-224 (224)
7 COG0710 AroD 3-dehydroquinate 100.0 1.6E-49 3.5E-54 382.6 24.3 222 23-247 1-228 (231)
8 cd00502 DHQase_I Type I 3-dehy 100.0 1.2E-48 2.5E-53 380.8 24.4 215 25-245 1-224 (225)
9 PRK14027 quinate/shikimate deh 100.0 4.4E-49 9.5E-54 395.3 20.6 215 252-486 3-227 (283)
10 PRK12749 quinate/shikimate deh 100.0 5.2E-49 1.1E-53 395.9 19.9 198 249-465 3-211 (288)
11 PRK12549 shikimate 5-dehydroge 100.0 2.4E-48 5.2E-53 390.8 21.9 216 250-486 2-225 (284)
12 PRK13575 3-dehydroquinate dehy 100.0 3.3E-47 7.1E-52 372.3 24.6 220 23-245 3-236 (238)
13 PRK12548 shikimate 5-dehydroge 100.0 3.4E-47 7.5E-52 383.6 20.2 220 249-487 5-235 (289)
14 PRK12550 shikimate 5-dehydroge 100.0 6.3E-47 1.4E-51 377.5 21.0 208 248-487 4-215 (272)
15 TIGR01809 Shik-DH-AROM shikima 100.0 9.3E-47 2E-51 379.1 20.8 196 252-465 4-205 (282)
16 PRK00258 aroE shikimate 5-dehy 100.0 1.5E-46 3.3E-51 377.0 21.8 215 250-486 2-219 (278)
17 PRK13576 3-dehydroquinate dehy 100.0 6.5E-46 1.4E-50 357.0 22.1 204 22-247 1-206 (216)
18 TIGR00507 aroE shikimate 5-deh 100.0 1.7E-44 3.7E-49 360.6 21.7 211 254-487 1-213 (270)
19 PRK01261 aroD 3-dehydroquinate 100.0 2E-43 4.4E-48 342.8 23.9 214 9-246 4-225 (229)
20 KOG0692 Pentafunctional AROM p 100.0 1.4E-31 3E-36 274.4 -8.9 367 76-463 148-524 (595)
21 PF08501 Shikimate_dh_N: Shiki 99.9 3E-27 6.5E-32 195.1 6.8 81 258-338 1-83 (83)
22 PRK14192 bifunctional 5,10-met 99.8 4.1E-20 8.9E-25 185.5 13.7 179 256-487 38-230 (283)
23 PF01488 Shikimate_DH: Shikima 99.4 4.1E-13 8.9E-18 120.8 8.8 80 377-463 8-88 (135)
24 PRK08291 ectoine utilization p 99.0 1.1E-09 2.4E-14 112.8 8.5 111 330-461 96-208 (330)
25 TIGR02992 ectoine_eutC ectoine 98.9 3E-09 6.4E-14 109.5 8.6 110 331-461 94-205 (326)
26 cd01065 NAD_bind_Shikimate_DH 98.9 1.5E-08 3.2E-13 92.3 11.1 114 352-488 1-116 (155)
27 PRK13940 glutamyl-tRNA reducta 98.7 2.1E-08 4.5E-13 106.3 6.4 129 314-462 112-254 (414)
28 cd05311 NAD_bind_2_malic_enz N 98.6 1.1E-07 2.4E-12 93.0 8.9 104 354-486 9-126 (226)
29 COG0373 HemA Glutamyl-tRNA red 98.6 2.2E-07 4.7E-12 97.6 9.4 166 270-459 64-247 (414)
30 PRK00045 hemA glutamyl-tRNA re 98.5 4E-08 8.6E-13 104.7 2.9 155 314-488 113-280 (423)
31 cd01078 NAD_bind_H4MPT_DH NADP 98.4 1.6E-06 3.4E-11 82.5 10.3 103 349-463 3-110 (194)
32 TIGR02853 spore_dpaA dipicolin 98.2 1.1E-05 2.5E-10 81.6 11.5 93 377-487 147-239 (287)
33 PLN00203 glutamyl-tRNA reducta 98.1 2.9E-06 6.3E-11 92.3 5.5 133 315-463 196-342 (519)
34 cd05213 NAD_bind_Glutamyl_tRNA 98.0 2.1E-05 4.6E-10 80.6 8.3 154 313-488 108-273 (311)
35 cd01075 NAD_bind_Leu_Phe_Val_D 97.8 0.0002 4.4E-09 68.7 10.9 110 354-488 6-115 (200)
36 PRK08306 dipicolinate synthase 97.8 5.9E-05 1.3E-09 76.8 7.5 93 377-487 148-240 (296)
37 PRK06141 ornithine cyclodeamin 97.7 8.9E-05 1.9E-09 76.1 7.6 75 380-461 124-200 (314)
38 cd05191 NAD_bind_amino_acid_DH 97.7 0.00041 8.9E-09 57.3 9.8 52 354-412 3-55 (86)
39 PF03807 F420_oxidored: NADP o 97.6 0.00031 6.8E-09 58.6 9.0 89 383-487 1-93 (96)
40 PRK08618 ornithine cyclodeamin 97.6 0.00014 3E-09 75.0 7.8 78 380-464 126-205 (325)
41 PRK14175 bifunctional 5,10-met 97.6 0.00082 1.8E-08 67.9 12.6 142 256-414 37-192 (286)
42 PRK07340 ornithine cyclodeamin 97.6 0.00026 5.7E-09 72.3 9.2 74 380-461 124-199 (304)
43 TIGR01035 hemA glutamyl-tRNA r 97.5 0.00012 2.6E-09 78.1 5.8 74 378-461 177-251 (417)
44 cd01080 NAD_bind_m-THF_DH_Cycl 97.5 0.00054 1.2E-08 64.0 8.7 40 377-416 40-80 (168)
45 cd05291 HicDH_like L-2-hydroxy 97.4 0.00061 1.3E-08 69.6 9.6 83 382-467 1-89 (306)
46 TIGR00518 alaDH alanine dehydr 97.4 0.00036 7.8E-09 73.3 7.5 99 379-486 165-265 (370)
47 PRK00676 hemA glutamyl-tRNA re 97.3 0.00032 6.8E-09 72.4 4.9 93 314-416 106-210 (338)
48 PF00670 AdoHcyase_NAD: S-aden 97.1 0.0061 1.3E-07 56.5 11.0 92 377-488 19-110 (162)
49 COG1748 LYS9 Saccharopine dehy 97.0 0.00067 1.5E-08 71.2 4.9 83 382-467 2-85 (389)
50 PRK08762 molybdopterin biosynt 97.0 0.0016 3.5E-08 68.5 7.8 77 379-459 133-234 (376)
51 COG0300 DltE Short-chain dehyd 97.0 0.0013 2.8E-08 65.7 5.9 87 379-471 4-105 (265)
52 PF03446 NAD_binding_2: NAD bi 96.9 0.0023 5.1E-08 59.1 7.1 91 382-490 2-96 (163)
53 TIGR01915 npdG NADPH-dependent 96.8 0.013 2.9E-07 56.8 11.1 42 383-424 2-44 (219)
54 PRK14194 bifunctional 5,10-met 96.8 0.0073 1.6E-07 61.5 9.6 131 272-421 54-200 (301)
55 PRK12475 thiamine/molybdopteri 96.8 0.0034 7.3E-08 65.2 7.4 76 378-458 21-124 (338)
56 PF02826 2-Hacid_dh_C: D-isome 96.7 0.0043 9.4E-08 58.3 7.2 94 376-486 31-125 (178)
57 PRK06718 precorrin-2 dehydroge 96.7 0.0039 8.5E-08 60.0 6.9 46 377-422 6-52 (202)
58 PF01210 NAD_Gly3P_dh_N: NAD-d 96.7 0.004 8.6E-08 57.3 6.6 80 383-468 1-83 (157)
59 PF02737 3HCDH_N: 3-hydroxyacy 96.7 0.0056 1.2E-07 57.7 7.7 43 383-425 1-43 (180)
60 PRK05476 S-adenosyl-L-homocyst 96.6 0.0082 1.8E-07 64.1 9.1 45 377-421 208-252 (425)
61 COG2084 MmsB 3-hydroxyisobutyr 96.5 0.0048 1E-07 62.4 6.2 96 383-490 2-97 (286)
62 PF13241 NAD_binding_7: Putati 96.5 0.0033 7.1E-08 53.8 4.3 38 377-414 3-40 (103)
63 PRK12491 pyrroline-5-carboxyla 96.5 0.013 2.8E-07 58.9 9.2 88 382-486 3-95 (272)
64 PRK08293 3-hydroxybutyryl-CoA 96.5 0.019 4.1E-07 58.0 10.3 42 382-423 4-45 (287)
65 COG4221 Short-chain alcohol de 96.4 0.003 6.4E-08 62.0 4.1 81 379-460 4-91 (246)
66 PRK08644 thiamine biosynthesis 96.4 0.013 2.7E-07 56.9 8.3 51 378-428 25-94 (212)
67 PF00056 Ldh_1_N: lactate/mala 96.4 0.042 9.1E-07 49.7 11.2 75 383-460 2-79 (141)
68 PRK14982 acyl-ACP reductase; P 96.4 0.0062 1.3E-07 63.1 6.4 49 377-425 151-202 (340)
69 cd01487 E1_ThiF_like E1_ThiF_l 96.4 0.0073 1.6E-07 56.7 6.3 46 383-428 1-65 (174)
70 PRK05597 molybdopterin biosynt 96.4 0.011 2.4E-07 61.8 8.2 76 379-458 26-126 (355)
71 PRK14188 bifunctional 5,10-met 96.4 0.018 3.8E-07 58.7 9.3 140 256-415 37-194 (296)
72 TIGR02356 adenyl_thiF thiazole 96.4 0.0073 1.6E-07 58.0 6.3 75 379-458 19-119 (202)
73 PTZ00142 6-phosphogluconate de 96.3 0.016 3.5E-07 62.7 9.5 96 383-490 3-103 (470)
74 PRK10792 bifunctional 5,10-met 96.3 0.032 7E-07 56.4 11.0 138 256-413 38-192 (285)
75 PRK14178 bifunctional 5,10-met 96.2 0.041 8.9E-07 55.5 11.1 139 256-414 31-186 (279)
76 PRK09140 2-dehydro-3-deoxy-6-p 96.2 0.12 2.6E-06 50.0 14.0 119 26-172 12-130 (206)
77 PRK07417 arogenate dehydrogena 96.2 0.024 5.3E-07 57.0 9.6 40 383-422 2-41 (279)
78 PRK08655 prephenate dehydrogen 96.2 0.02 4.4E-07 61.5 9.5 43 383-425 2-45 (437)
79 PF07991 IlvN: Acetohydroxy ac 96.2 0.024 5.1E-07 52.6 8.4 50 379-428 2-51 (165)
80 PRK07688 thiamine/molybdopteri 96.2 0.013 2.9E-07 60.8 7.6 36 379-414 22-58 (339)
81 TIGR01470 cysG_Nterm siroheme 96.2 0.012 2.5E-07 56.9 6.6 46 377-422 5-51 (205)
82 cd04726 KGPDC_HPS 3-Keto-L-gul 96.2 0.14 3E-06 48.6 14.1 130 24-172 1-132 (202)
83 KOG1208 Dehydrogenases with di 96.2 0.0075 1.6E-07 62.0 5.5 89 377-469 31-133 (314)
84 PRK13243 glyoxylate reductase; 96.2 0.012 2.6E-07 61.0 7.0 94 377-487 146-239 (333)
85 PRK05690 molybdopterin biosynt 96.2 0.021 4.7E-07 56.5 8.5 76 379-459 30-131 (245)
86 PRK07680 late competence prote 96.1 0.02 4.3E-07 57.4 8.3 42 383-424 2-47 (273)
87 PRK05600 thiamine biosynthesis 96.1 0.014 3.1E-07 61.3 7.5 50 379-428 39-108 (370)
88 PRK07523 gluconate 5-dehydroge 96.1 0.014 3.1E-07 57.0 7.0 49 378-426 7-56 (255)
89 PRK07679 pyrroline-5-carboxyla 96.1 0.026 5.7E-07 56.7 9.0 88 382-486 4-97 (279)
90 cd00755 YgdL_like Family of ac 96.1 0.017 3.7E-07 56.8 7.4 50 379-428 9-78 (231)
91 PRK06719 precorrin-2 dehydroge 96.1 0.012 2.5E-07 54.4 5.9 43 377-421 9-51 (157)
92 cd00958 DhnA Class I fructose- 96.1 0.098 2.1E-06 51.1 12.8 153 34-199 19-185 (235)
93 TIGR00872 gnd_rel 6-phosphoglu 96.1 0.024 5.2E-07 57.7 8.7 40 383-422 2-41 (298)
94 PRK06046 alanine dehydrogenase 96.1 0.016 3.4E-07 59.9 7.4 72 381-459 129-202 (326)
95 COG0345 ProC Pyrroline-5-carbo 96.0 0.025 5.4E-07 56.7 8.4 46 382-427 2-51 (266)
96 PRK15116 sulfur acceptor prote 96.0 0.017 3.8E-07 58.0 7.3 78 378-459 27-130 (268)
97 PRK05867 short chain dehydroge 96.0 0.015 3.3E-07 56.8 6.9 49 378-426 6-55 (253)
98 PRK00094 gpsA NAD(P)H-dependen 96.0 0.042 9E-07 56.0 10.3 41 383-423 3-43 (325)
99 PRK08339 short chain dehydroge 96.0 0.016 3.4E-07 57.5 6.9 48 378-425 5-53 (263)
100 PRK14106 murD UDP-N-acetylmura 96.0 0.029 6.3E-07 60.1 9.4 76 379-461 3-79 (450)
101 PRK14176 bifunctional 5,10-met 96.0 0.076 1.6E-06 53.8 11.6 141 256-413 43-197 (287)
102 PRK00066 ldh L-lactate dehydro 96.0 0.04 8.6E-07 56.7 9.9 48 381-428 6-55 (315)
103 PRK05854 short chain dehydroge 95.9 0.02 4.3E-07 58.4 7.3 49 377-425 10-59 (313)
104 PRK00141 murD UDP-N-acetylmura 95.9 0.013 2.8E-07 63.6 6.0 46 377-422 11-56 (473)
105 PRK06949 short chain dehydroge 95.9 0.024 5.2E-07 55.3 7.5 49 377-425 5-54 (258)
106 PRK05479 ketol-acid reductoiso 95.9 0.034 7.4E-07 57.5 8.7 49 377-425 13-61 (330)
107 PRK11572 copper homeostasis pr 95.9 0.69 1.5E-05 45.9 17.4 146 32-189 8-164 (248)
108 PRK05872 short chain dehydroge 95.8 0.021 4.5E-07 57.6 7.0 49 377-425 5-54 (296)
109 cd05211 NAD_bind_Glu_Leu_Phe_V 95.8 0.049 1.1E-06 53.1 9.3 95 354-461 3-108 (217)
110 COG0287 TyrA Prephenate dehydr 95.8 0.04 8.6E-07 55.7 8.9 96 382-490 4-100 (279)
111 PLN02256 arogenate dehydrogena 95.8 0.039 8.5E-07 56.5 9.0 44 380-425 35-78 (304)
112 PRK14189 bifunctional 5,10-met 95.8 0.099 2.1E-06 53.0 11.7 140 257-413 38-191 (285)
113 PRK01438 murD UDP-N-acetylmura 95.8 0.034 7.5E-07 60.1 9.1 49 377-425 12-61 (480)
114 PRK07060 short chain dehydroge 95.8 0.024 5.2E-07 54.7 7.2 49 377-425 5-54 (245)
115 PRK09260 3-hydroxybutyryl-CoA 95.8 0.024 5.3E-07 57.2 7.4 43 382-424 2-44 (288)
116 PRK05866 short chain dehydroge 95.8 0.024 5.1E-07 57.3 7.2 49 377-425 36-85 (293)
117 cd04740 DHOD_1B_like Dihydroor 95.8 0.25 5.5E-06 50.0 14.7 84 25-117 91-185 (296)
118 PRK08277 D-mannonate oxidoredu 95.8 0.025 5.3E-07 56.2 7.2 49 377-425 6-55 (278)
119 cd01076 NAD_bind_1_Glu_DH NAD( 95.8 0.051 1.1E-06 53.3 9.2 94 354-459 11-115 (227)
120 PF03435 Saccharop_dh: Sacchar 95.8 0.0054 1.2E-07 64.5 2.5 74 384-459 1-76 (386)
121 PRK08085 gluconate 5-dehydroge 95.8 0.023 5.1E-07 55.4 6.8 49 378-426 6-55 (254)
122 COG1064 AdhP Zn-dependent alco 95.8 0.056 1.2E-06 55.9 9.7 45 380-425 166-210 (339)
123 PRK07502 cyclohexadienyl dehyd 95.7 0.027 5.8E-07 57.5 7.4 93 381-488 6-100 (307)
124 KOG0725 Reductases with broad 95.7 0.076 1.7E-06 53.4 10.4 52 377-428 4-56 (270)
125 PRK07063 short chain dehydroge 95.7 0.025 5.5E-07 55.4 6.9 48 379-426 5-53 (260)
126 PRK08862 short chain dehydroge 95.7 0.025 5.4E-07 55.0 6.8 47 379-425 3-50 (227)
127 PRK07231 fabG 3-ketoacyl-(acyl 95.7 0.026 5.6E-07 54.6 6.8 47 379-425 3-50 (251)
128 PRK06057 short chain dehydroge 95.7 0.025 5.4E-07 55.3 6.8 47 379-425 5-52 (255)
129 COG2085 Predicted dinucleotide 95.7 0.067 1.4E-06 51.6 9.3 41 382-422 2-42 (211)
130 PRK06200 2,3-dihydroxy-2,3-dih 95.7 0.027 5.8E-07 55.4 6.9 46 379-424 4-50 (263)
131 PRK08265 short chain dehydroge 95.7 0.027 5.8E-07 55.5 6.8 46 379-424 4-50 (261)
132 PRK07066 3-hydroxybutyryl-CoA 95.7 0.026 5.7E-07 58.2 6.9 41 382-422 8-48 (321)
133 PRK05717 oxidoreductase; Valid 95.6 0.03 6.6E-07 54.7 7.1 48 377-424 6-54 (255)
134 PRK07478 short chain dehydroge 95.6 0.028 6.1E-07 54.9 6.9 48 379-426 4-52 (254)
135 PLN02780 ketoreductase/ oxidor 95.6 0.025 5.3E-07 58.1 6.6 47 380-426 52-99 (320)
136 PRK06125 short chain dehydroge 95.6 0.03 6.6E-07 54.9 7.0 48 378-425 4-52 (259)
137 PRK13403 ketol-acid reductoiso 95.6 0.033 7.1E-07 57.3 7.3 91 377-485 12-103 (335)
138 PRK07774 short chain dehydroge 95.6 0.032 6.9E-07 54.1 7.1 47 379-425 4-51 (250)
139 PRK09599 6-phosphogluconate de 95.6 0.049 1.1E-06 55.4 8.7 40 383-422 2-41 (301)
140 TIGR00873 gnd 6-phosphoglucona 95.6 0.042 9.1E-07 59.5 8.5 40 384-423 2-41 (467)
141 PRK09242 tropinone reductase; 95.6 0.031 6.8E-07 54.6 7.0 50 377-426 5-55 (257)
142 PRK07574 formate dehydrogenase 95.6 0.028 6.1E-07 59.4 6.9 96 377-487 188-283 (385)
143 PLN02350 phosphogluconate dehy 95.6 0.047 1E-06 59.5 8.7 42 382-423 7-48 (493)
144 PRK15461 NADH-dependent gamma- 95.5 0.028 6E-07 57.2 6.6 40 383-422 3-42 (296)
145 cd07937 DRE_TIM_PC_TC_5S Pyruv 95.5 0.76 1.6E-05 46.3 16.8 210 35-245 20-245 (275)
146 PRK08703 short chain dehydroge 95.5 0.032 7E-07 53.9 6.8 48 378-425 3-51 (239)
147 PRK06139 short chain dehydroge 95.5 0.031 6.6E-07 57.7 6.9 49 378-426 4-53 (330)
148 PRK09186 flagellin modificatio 95.5 0.032 7E-07 54.3 6.8 46 380-425 3-49 (256)
149 PRK06172 short chain dehydroge 95.5 0.034 7.3E-07 54.2 6.9 48 378-425 4-52 (253)
150 PRK07062 short chain dehydroge 95.5 0.034 7.4E-07 54.6 6.9 49 378-426 5-54 (265)
151 PRK06196 oxidoreductase; Provi 95.5 0.033 7.2E-07 56.6 7.0 48 378-425 23-71 (315)
152 TIGR03128 RuMP_HxlA 3-hexulose 95.5 0.16 3.4E-06 48.6 11.2 130 25-172 1-132 (206)
153 cd01492 Aos1_SUMO Ubiquitin ac 95.5 0.028 6E-07 53.9 5.9 76 379-459 19-119 (197)
154 cd00757 ThiF_MoeB_HesA_family 95.5 0.022 4.8E-07 55.7 5.4 50 379-428 19-88 (228)
155 PLN02928 oxidoreductase family 95.5 0.03 6.4E-07 58.4 6.6 105 377-486 155-260 (347)
156 TIGR01505 tartro_sem_red 2-hyd 95.5 0.027 5.9E-07 56.8 6.2 40 383-422 1-40 (291)
157 PRK14618 NAD(P)H-dependent gly 95.4 0.039 8.5E-07 56.7 7.4 42 382-423 5-46 (328)
158 cd00958 DhnA Class I fructose- 95.4 0.43 9.2E-06 46.6 14.4 133 32-170 72-211 (235)
159 TIGR03325 BphB_TodD cis-2,3-di 95.4 0.032 7E-07 54.9 6.5 45 379-423 3-48 (262)
160 PRK07634 pyrroline-5-carboxyla 95.4 0.025 5.5E-07 55.3 5.7 75 381-467 4-83 (245)
161 PRK07890 short chain dehydroge 95.4 0.036 7.8E-07 54.0 6.8 47 379-425 3-50 (258)
162 PRK06124 gluconate 5-dehydroge 95.4 0.039 8.4E-07 53.9 7.0 49 377-425 7-56 (256)
163 PRK07825 short chain dehydroge 95.4 0.038 8.3E-07 54.6 7.0 47 379-425 3-50 (273)
164 cd00401 AdoHcyase S-adenosyl-L 95.4 0.044 9.6E-07 58.4 7.8 48 377-425 198-245 (413)
165 PRK08507 prephenate dehydrogen 95.4 0.065 1.4E-06 53.7 8.6 39 383-421 2-42 (275)
166 PLN02688 pyrroline-5-carboxyla 95.4 0.068 1.5E-06 53.1 8.7 40 383-422 2-46 (266)
167 PRK14620 NAD(P)H-dependent gly 95.4 0.091 2E-06 53.9 9.9 41 383-423 2-42 (326)
168 PRK08328 hypothetical protein; 95.4 0.019 4.2E-07 56.3 4.6 37 379-415 25-62 (231)
169 PRK11559 garR tartronate semia 95.4 0.036 7.7E-07 56.1 6.7 41 382-422 3-43 (296)
170 PRK12490 6-phosphogluconate de 95.4 0.05 1.1E-06 55.3 7.8 40 383-422 2-41 (299)
171 PF01408 GFO_IDH_MocA: Oxidore 95.4 0.069 1.5E-06 46.0 7.6 88 383-487 2-93 (120)
172 PF00106 adh_short: short chai 95.3 0.045 9.8E-07 49.6 6.7 45 382-426 1-49 (167)
173 PTZ00075 Adenosylhomocysteinas 95.3 0.062 1.4E-06 58.0 8.6 43 377-419 250-292 (476)
174 PRK07814 short chain dehydroge 95.3 0.044 9.6E-07 54.0 7.0 48 378-425 7-55 (263)
175 PRK08589 short chain dehydroge 95.3 0.043 9.2E-07 54.5 6.9 46 379-425 4-50 (272)
176 cd00300 LDH_like L-lactate deh 95.3 0.08 1.7E-06 54.0 9.0 46 384-429 1-48 (300)
177 PRK06407 ornithine cyclodeamin 95.3 0.052 1.1E-06 55.5 7.7 46 381-426 117-164 (301)
178 PRK06823 ornithine cyclodeamin 95.3 0.053 1.2E-06 55.8 7.7 46 381-426 128-175 (315)
179 COG1648 CysG Siroheme synthase 95.3 0.06 1.3E-06 52.2 7.6 87 377-481 8-95 (210)
180 PRK08217 fabG 3-ketoacyl-(acyl 95.3 0.047 1E-06 52.8 7.0 47 379-425 3-50 (253)
181 PRK14177 bifunctional 5,10-met 95.3 0.14 3.1E-06 51.8 10.4 121 273-412 55-191 (284)
182 PRK14180 bifunctional 5,10-met 95.2 0.27 5.8E-06 49.8 12.4 137 257-413 37-191 (282)
183 PRK13394 3-hydroxybutyrate deh 95.2 0.048 1E-06 53.2 7.0 48 379-426 5-53 (262)
184 PRK15469 ghrA bifunctional gly 95.2 0.027 5.8E-07 57.9 5.3 93 377-486 132-224 (312)
185 PRK07067 sorbitol dehydrogenas 95.2 0.045 9.7E-07 53.6 6.7 46 379-424 4-50 (257)
186 PRK07455 keto-hydroxyglutarate 95.2 0.28 6E-06 46.6 11.8 121 26-176 14-134 (187)
187 cd00452 KDPG_aldolase KDPG and 95.2 0.37 7.9E-06 45.7 12.7 118 26-172 6-123 (190)
188 PRK06197 short chain dehydroge 95.2 0.043 9.2E-07 55.5 6.7 48 378-425 13-61 (306)
189 PRK14174 bifunctional 5,10-met 95.2 0.22 4.8E-06 50.7 11.7 141 256-416 36-199 (295)
190 TIGR02354 thiF_fam2 thiamine b 95.2 0.025 5.4E-07 54.4 4.6 36 378-413 18-54 (200)
191 PRK06505 enoyl-(acyl carrier p 95.2 0.039 8.5E-07 55.0 6.2 41 379-419 5-48 (271)
192 PRK06129 3-hydroxyacyl-CoA deh 95.2 0.064 1.4E-06 54.8 7.8 41 382-422 3-43 (308)
193 PRK02472 murD UDP-N-acetylmura 95.2 0.05 1.1E-06 58.2 7.4 46 379-424 3-48 (447)
194 PRK07831 short chain dehydroge 95.1 0.048 1.1E-06 53.5 6.7 48 378-425 14-63 (262)
195 PRK07097 gluconate 5-dehydroge 95.1 0.052 1.1E-06 53.5 6.9 49 377-425 6-55 (265)
196 PRK14172 bifunctional 5,10-met 95.1 0.4 8.7E-06 48.4 13.2 137 257-413 38-191 (278)
197 PRK08945 putative oxoacyl-(acy 95.1 0.057 1.2E-06 52.4 7.1 50 377-426 8-58 (247)
198 PRK07035 short chain dehydroge 95.1 0.056 1.2E-06 52.6 7.0 48 378-425 5-53 (252)
199 PRK07326 short chain dehydroge 95.1 0.054 1.2E-06 52.1 6.8 46 380-425 5-51 (237)
200 PLN02819 lysine-ketoglutarate 95.1 0.022 4.7E-07 66.9 4.6 85 380-472 568-670 (1042)
201 PRK14191 bifunctional 5,10-met 95.1 0.18 3.9E-06 51.1 10.5 139 257-412 37-189 (285)
202 PRK07589 ornithine cyclodeamin 95.1 0.057 1.2E-06 56.3 7.2 46 381-426 129-176 (346)
203 PRK07819 3-hydroxybutyryl-CoA 95.1 0.054 1.2E-06 54.8 6.9 43 382-424 6-48 (286)
204 PRK06522 2-dehydropantoate 2-r 95.0 0.097 2.1E-06 52.7 8.7 40 383-422 2-41 (304)
205 cd05293 LDH_1 A subgroup of L- 95.0 0.13 2.9E-06 52.8 9.7 84 382-468 4-93 (312)
206 PRK07109 short chain dehydroge 95.0 0.059 1.3E-06 55.6 7.2 48 378-425 5-53 (334)
207 PRK12828 short chain dehydroge 95.0 0.056 1.2E-06 51.7 6.6 46 379-424 5-51 (239)
208 PRK07576 short chain dehydroge 95.0 0.062 1.3E-06 53.1 7.0 48 378-425 6-54 (264)
209 PRK14184 bifunctional 5,10-met 95.0 0.27 5.9E-06 49.8 11.6 139 256-414 36-195 (286)
210 PRK05786 fabG 3-ketoacyl-(acyl 95.0 0.063 1.4E-06 51.6 6.9 47 379-425 3-50 (238)
211 PRK12939 short chain dehydroge 95.0 0.062 1.4E-06 51.9 6.9 47 379-425 5-52 (250)
212 PRK12480 D-lactate dehydrogena 95.0 0.1 2.2E-06 54.1 8.8 41 377-417 142-182 (330)
213 PRK07677 short chain dehydroge 95.0 0.056 1.2E-06 52.8 6.7 45 381-425 1-46 (252)
214 PRK06194 hypothetical protein; 95.0 0.06 1.3E-06 53.5 7.0 47 379-425 4-51 (287)
215 PRK07530 3-hydroxybutyryl-CoA 95.0 0.054 1.2E-06 54.8 6.7 41 382-422 5-45 (292)
216 PRK00043 thiE thiamine-phospha 95.0 0.83 1.8E-05 43.5 14.6 108 36-173 21-131 (212)
217 PRK07454 short chain dehydroge 95.0 0.061 1.3E-06 52.0 6.8 46 380-425 5-51 (241)
218 PRK11880 pyrroline-5-carboxyla 95.0 0.14 3E-06 50.9 9.5 44 382-425 3-49 (267)
219 PRK14190 bifunctional 5,10-met 95.0 0.34 7.4E-06 49.1 12.2 124 273-412 54-190 (284)
220 PRK06138 short chain dehydroge 95.0 0.059 1.3E-06 52.2 6.7 47 379-425 3-50 (252)
221 PLN03139 formate dehydrogenase 94.9 0.058 1.3E-06 57.0 6.9 96 377-487 195-290 (386)
222 KOG1014 17 beta-hydroxysteroid 94.9 0.055 1.2E-06 54.9 6.4 84 381-469 49-146 (312)
223 PRK06935 2-deoxy-D-gluconate 3 94.9 0.06 1.3E-06 52.7 6.7 47 378-425 12-59 (258)
224 PRK05876 short chain dehydroge 94.9 0.062 1.3E-06 53.6 6.9 47 379-425 4-51 (275)
225 PRK06500 short chain dehydroge 94.9 0.061 1.3E-06 52.0 6.7 46 379-424 4-50 (249)
226 PRK07453 protochlorophyllide o 94.9 0.062 1.3E-06 54.8 7.0 46 380-425 5-51 (322)
227 cd00945 Aldolase_Class_I Class 94.9 2.6 5.6E-05 39.2 17.5 152 34-200 11-179 (201)
228 PRK08643 acetoin reductase; Va 94.9 0.064 1.4E-06 52.4 6.7 45 381-425 2-47 (256)
229 PRK14179 bifunctional 5,10-met 94.9 0.16 3.4E-06 51.5 9.6 120 273-411 54-189 (284)
230 PLN02253 xanthoxin dehydrogena 94.9 0.065 1.4E-06 53.2 6.8 48 378-425 15-63 (280)
231 PRK05875 short chain dehydroge 94.9 0.068 1.5E-06 52.8 7.0 48 378-425 4-52 (276)
232 PRK12829 short chain dehydroge 94.9 0.064 1.4E-06 52.4 6.7 48 378-425 8-56 (264)
233 PF02423 OCD_Mu_crystall: Orni 94.9 0.052 1.1E-06 55.8 6.2 75 381-462 128-204 (313)
234 PRK06079 enoyl-(acyl carrier p 94.9 0.057 1.2E-06 53.0 6.3 45 378-423 4-51 (252)
235 PRK09072 short chain dehydroge 94.9 0.071 1.5E-06 52.4 7.0 46 379-424 3-49 (263)
236 TIGR03206 benzo_BadH 2-hydroxy 94.9 0.07 1.5E-06 51.6 6.9 46 380-425 2-48 (250)
237 PRK14169 bifunctional 5,10-met 94.9 0.28 6.1E-06 49.6 11.2 142 256-414 35-191 (282)
238 PF10727 Rossmann-like: Rossma 94.9 0.036 7.8E-07 49.4 4.3 46 382-427 11-57 (127)
239 TIGR02371 ala_DH_arch alanine 94.8 0.085 1.8E-06 54.5 7.7 45 381-425 128-174 (325)
240 PRK14181 bifunctional 5,10-met 94.8 0.72 1.6E-05 46.8 14.1 137 256-412 31-189 (287)
241 PRK12330 oxaloacetate decarbox 94.8 3.5 7.5E-05 45.1 20.2 226 13-245 6-253 (499)
242 PRK06199 ornithine cyclodeamin 94.8 0.077 1.7E-06 56.0 7.3 46 381-426 155-203 (379)
243 PRK05993 short chain dehydroge 94.8 0.064 1.4E-06 53.4 6.5 42 381-422 4-46 (277)
244 PRK14171 bifunctional 5,10-met 94.8 0.47 1E-05 48.1 12.6 121 273-412 54-191 (288)
245 cd00959 DeoC 2-deoxyribose-5-p 94.7 1.8 3.9E-05 41.5 16.2 145 32-190 13-172 (203)
246 PRK14173 bifunctional 5,10-met 94.7 0.36 7.8E-06 49.0 11.6 138 256-413 34-188 (287)
247 PTZ00117 malate dehydrogenase; 94.7 0.2 4.3E-06 51.6 10.1 77 380-460 4-83 (319)
248 PRK06476 pyrroline-5-carboxyla 94.7 0.15 3.3E-06 50.5 9.0 42 383-424 2-46 (258)
249 PRK07984 enoyl-(acyl carrier p 94.7 0.068 1.5E-06 53.1 6.4 45 379-424 4-51 (262)
250 PRK06113 7-alpha-hydroxysteroi 94.7 0.085 1.8E-06 51.6 7.0 48 378-425 8-56 (255)
251 PRK08416 7-alpha-hydroxysteroi 94.7 0.083 1.8E-06 51.9 7.0 49 377-425 4-54 (260)
252 PRK06035 3-hydroxyacyl-CoA deh 94.7 0.074 1.6E-06 53.8 6.7 41 382-422 4-44 (291)
253 PRK07666 fabG 3-ketoacyl-(acyl 94.7 0.091 2E-06 50.7 7.1 47 379-425 5-52 (239)
254 TIGR02355 moeB molybdopterin s 94.6 0.043 9.4E-07 54.2 4.8 35 379-413 22-57 (240)
255 PLN02516 methylenetetrahydrofo 94.6 0.36 7.8E-06 49.3 11.4 122 273-413 61-200 (299)
256 PRK01130 N-acetylmannosamine-6 94.6 1.8 3.9E-05 41.9 15.9 118 34-172 21-145 (221)
257 PRK08268 3-hydroxy-acyl-CoA de 94.6 0.1 2.2E-06 57.3 7.9 41 382-422 8-48 (507)
258 PRK12826 3-ketoacyl-(acyl-carr 94.6 0.085 1.8E-06 50.9 6.6 47 379-425 4-51 (251)
259 PF03932 CutC: CutC family; I 94.6 0.76 1.6E-05 44.3 12.9 144 32-186 7-160 (201)
260 PRK08159 enoyl-(acyl carrier p 94.6 0.071 1.5E-06 53.2 6.2 47 378-424 7-59 (272)
261 PF00899 ThiF: ThiF family; I 94.5 0.043 9.3E-07 48.9 4.1 32 381-412 2-34 (135)
262 PRK08605 D-lactate dehydrogena 94.5 0.081 1.8E-06 54.8 6.8 93 377-487 142-235 (332)
263 cd01491 Ube1_repeat1 Ubiquitin 94.5 0.12 2.5E-06 52.6 7.6 76 379-458 17-113 (286)
264 TIGR01108 oadA oxaloacetate de 94.5 3.8 8.2E-05 45.8 20.0 210 34-245 19-245 (582)
265 PRK08213 gluconate 5-dehydroge 94.5 0.1 2.2E-06 51.1 7.0 48 378-425 9-57 (259)
266 PTZ00082 L-lactate dehydrogena 94.5 0.14 3.1E-06 52.8 8.3 80 380-461 5-85 (321)
267 PRK12429 3-hydroxybutyrate deh 94.5 0.1 2.2E-06 50.7 6.9 46 380-425 3-49 (258)
268 TIGR00936 ahcY adenosylhomocys 94.4 0.084 1.8E-06 56.1 6.7 44 377-420 191-234 (406)
269 PRK14182 bifunctional 5,10-met 94.4 0.5 1.1E-05 47.8 11.9 138 256-413 35-190 (282)
270 PF02558 ApbA: Ketopantoate re 94.4 0.081 1.7E-06 47.7 5.7 38 384-422 1-38 (151)
271 PRK05565 fabG 3-ketoacyl-(acyl 94.4 0.1 2.2E-06 50.2 6.8 47 379-425 3-51 (247)
272 PRK07531 bifunctional 3-hydrox 94.4 0.1 2.2E-06 57.0 7.5 41 382-422 5-45 (495)
273 PLN02712 arogenate dehydrogena 94.4 0.15 3.2E-06 57.8 8.9 39 377-415 365-403 (667)
274 PRK06720 hypothetical protein; 94.4 0.12 2.5E-06 48.3 6.8 48 378-425 13-61 (169)
275 PRK12742 oxidoreductase; Provi 94.4 0.1 2.2E-06 50.1 6.7 47 379-425 4-52 (237)
276 cd02940 DHPD_FMN Dihydropyrimi 94.4 1.4 3.1E-05 44.8 15.3 85 22-116 99-198 (299)
277 PRK14187 bifunctional 5,10-met 94.4 0.79 1.7E-05 46.7 13.2 138 256-413 37-193 (294)
278 PRK08251 short chain dehydroge 94.4 0.11 2.4E-06 50.4 6.9 45 381-425 2-47 (248)
279 PRK14183 bifunctional 5,10-met 94.4 0.57 1.2E-05 47.4 12.1 140 256-412 36-189 (281)
280 PRK05653 fabG 3-ketoacyl-(acyl 94.4 0.11 2.4E-06 49.8 6.9 46 380-425 4-50 (246)
281 PRK07074 short chain dehydroge 94.4 0.1 2.3E-06 50.9 6.8 44 381-424 2-46 (257)
282 PRK08628 short chain dehydroge 94.4 0.093 2E-06 51.2 6.4 47 377-424 3-50 (258)
283 PRK08594 enoyl-(acyl carrier p 94.3 0.088 1.9E-06 52.0 6.3 47 378-424 4-56 (257)
284 COG2423 Predicted ornithine cy 94.3 0.11 2.4E-06 53.8 7.1 48 381-428 130-179 (330)
285 PRK08303 short chain dehydroge 94.3 0.097 2.1E-06 53.3 6.7 48 378-425 5-63 (305)
286 TIGR00465 ilvC ketol-acid redu 94.3 0.19 4.1E-06 51.7 8.8 36 379-414 1-36 (314)
287 PRK08415 enoyl-(acyl carrier p 94.3 0.092 2E-06 52.5 6.4 36 379-414 3-41 (274)
288 cd03174 DRE_TIM_metallolyase D 94.3 5.3 0.00011 39.3 19.0 196 34-245 17-243 (265)
289 PRK06101 short chain dehydroge 94.3 0.1 2.2E-06 50.7 6.5 42 382-423 2-44 (240)
290 PRK07533 enoyl-(acyl carrier p 94.3 0.093 2E-06 51.7 6.4 39 377-415 6-47 (258)
291 PRK12921 2-dehydropantoate 2-r 94.3 0.16 3.5E-06 51.3 8.2 39 383-422 2-40 (305)
292 PRK06914 short chain dehydroge 94.3 0.11 2.5E-06 51.4 7.0 45 381-425 3-48 (280)
293 PRK12331 oxaloacetate decarbox 94.3 7.4 0.00016 42.1 21.1 228 13-245 5-250 (448)
294 PRK07024 short chain dehydroge 94.3 0.1 2.3E-06 51.1 6.6 45 381-425 2-47 (257)
295 COG0190 FolD 5,10-methylene-te 94.3 1.3 2.7E-05 44.8 14.1 140 256-414 35-190 (283)
296 PRK08267 short chain dehydroge 94.2 0.1 2.3E-06 51.0 6.5 44 382-425 2-46 (260)
297 PLN02494 adenosylhomocysteinas 94.2 0.12 2.6E-06 55.7 7.3 43 377-419 250-292 (477)
298 PRK08017 oxidoreductase; Provi 94.2 0.099 2.2E-06 50.8 6.2 40 382-421 3-43 (256)
299 PRK14166 bifunctional 5,10-met 94.2 0.44 9.6E-06 48.2 10.9 141 256-413 35-190 (282)
300 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.2 0.1 2.2E-06 57.2 6.8 42 381-422 5-46 (503)
301 PRK06130 3-hydroxybutyryl-CoA 94.2 0.11 2.3E-06 53.0 6.7 42 382-423 5-46 (311)
302 PLN03209 translocon at the inn 94.2 0.1 2.2E-06 57.6 6.8 46 380-425 79-125 (576)
303 PRK14619 NAD(P)H-dependent gly 94.2 0.23 4.9E-06 50.8 9.0 35 381-415 4-38 (308)
304 PRK12384 sorbitol-6-phosphate 94.1 0.12 2.7E-06 50.4 6.8 45 381-425 2-47 (259)
305 PRK07904 short chain dehydroge 94.1 0.12 2.5E-06 50.9 6.6 46 381-426 8-56 (253)
306 PRK14170 bifunctional 5,10-met 94.1 0.7 1.5E-05 46.8 12.1 122 272-412 52-189 (284)
307 PRK06182 short chain dehydroge 94.1 0.11 2.5E-06 51.3 6.5 41 381-421 3-44 (273)
308 PRK14167 bifunctional 5,10-met 94.1 0.6 1.3E-05 47.6 11.7 140 256-412 36-193 (297)
309 PRK08340 glucose-1-dehydrogena 94.1 0.12 2.6E-06 50.6 6.6 43 383-425 2-45 (259)
310 TIGR02320 PEP_mutase phosphoen 94.1 2 4.4E-05 43.6 15.5 122 69-197 70-215 (285)
311 PRK12936 3-ketoacyl-(acyl-carr 94.0 0.14 3E-06 49.3 6.8 46 379-424 4-50 (245)
312 PRK06940 short chain dehydroge 94.0 0.12 2.6E-06 51.5 6.6 44 381-425 2-45 (275)
313 PRK07102 short chain dehydroge 94.0 0.13 2.9E-06 49.8 6.7 44 382-425 2-46 (243)
314 PRK06545 prephenate dehydrogen 94.0 0.19 4E-06 52.6 8.2 37 382-418 1-37 (359)
315 PRK06223 malate dehydrogenase; 94.0 0.45 9.8E-06 48.4 10.8 44 382-425 3-47 (307)
316 PRK06180 short chain dehydroge 94.0 0.12 2.7E-06 51.3 6.5 43 381-423 4-47 (277)
317 PRK06841 short chain dehydroge 94.0 0.13 2.9E-06 49.9 6.7 40 378-417 12-52 (255)
318 PLN02545 3-hydroxybutyryl-CoA 93.9 0.14 2.9E-06 51.9 6.8 38 382-419 5-42 (295)
319 PRK09291 short chain dehydroge 93.9 0.15 3.2E-06 49.7 6.8 45 381-425 2-47 (257)
320 PF00208 ELFV_dehydrog: Glutam 93.9 0.32 6.9E-06 48.3 9.2 103 354-463 11-126 (244)
321 PRK14186 bifunctional 5,10-met 93.9 0.52 1.1E-05 48.0 10.9 140 256-412 37-190 (297)
322 PRK05884 short chain dehydroge 93.9 0.13 2.9E-06 49.5 6.4 42 383-424 2-44 (223)
323 PRK07806 short chain dehydroge 93.9 0.15 3.1E-06 49.5 6.7 46 379-424 4-51 (248)
324 TIGR03026 NDP-sugDHase nucleot 93.9 0.21 4.6E-06 53.1 8.4 40 383-422 2-41 (411)
325 TIGR01289 LPOR light-dependent 93.9 0.15 3.2E-06 52.1 6.9 45 381-425 3-49 (314)
326 PLN02477 glutamate dehydrogena 93.9 0.38 8.3E-06 51.2 10.2 53 354-413 186-239 (410)
327 PRK06181 short chain dehydroge 93.9 0.15 3.3E-06 49.9 6.8 44 382-425 2-46 (263)
328 PRK11064 wecC UDP-N-acetyl-D-m 93.8 0.33 7.2E-06 51.8 9.8 40 382-421 4-43 (415)
329 PRK06114 short chain dehydroge 93.8 0.17 3.6E-06 49.5 7.0 48 378-425 5-54 (254)
330 TIGR01832 kduD 2-deoxy-D-gluco 93.8 0.15 3.2E-06 49.4 6.5 36 379-414 3-39 (248)
331 PRK07791 short chain dehydroge 93.8 0.15 3.3E-06 51.1 6.8 47 379-425 4-60 (286)
332 PRK14193 bifunctional 5,10-met 93.8 0.77 1.7E-05 46.5 11.7 123 272-413 53-193 (284)
333 PRK05562 precorrin-2 dehydroge 93.8 0.14 3.1E-06 50.0 6.3 86 377-481 21-108 (223)
334 PRK07889 enoyl-(acyl carrier p 93.8 0.14 3E-06 50.5 6.3 46 379-424 5-55 (256)
335 cd02810 DHOD_DHPD_FMN Dihydroo 93.7 0.81 1.8E-05 46.1 12.0 89 22-118 98-196 (289)
336 cd04722 TIM_phosphate_binding 93.7 4.8 0.0001 36.8 16.4 124 36-175 12-145 (200)
337 PRK06603 enoyl-(acyl carrier p 93.7 0.16 3.5E-06 50.1 6.8 37 378-414 5-44 (260)
338 cd01488 Uba3_RUB Ubiquitin act 93.7 0.13 2.9E-06 52.2 6.2 46 383-428 1-66 (291)
339 PRK08936 glucose-1-dehydrogena 93.7 0.18 3.8E-06 49.5 7.0 48 378-425 4-53 (261)
340 PRK11199 tyrA bifunctional cho 93.7 0.29 6.4E-06 51.5 9.0 78 381-489 98-176 (374)
341 PLN02730 enoyl-[acyl-carrier-p 93.7 0.14 3E-06 52.4 6.3 48 377-425 5-55 (303)
342 cd05297 GH4_alpha_glucosidase_ 93.7 0.17 3.6E-06 54.2 7.2 83 383-466 2-90 (423)
343 PRK12823 benD 1,6-dihydroxycyc 93.6 0.17 3.7E-06 49.4 6.7 46 378-424 5-51 (260)
344 PRK10538 malonic semialdehyde 93.6 0.17 3.7E-06 49.2 6.6 42 383-424 2-44 (248)
345 PRK06198 short chain dehydroge 93.6 0.16 3.5E-06 49.6 6.4 46 379-424 4-51 (260)
346 cd00650 LDH_MDH_like NAD-depen 93.6 0.38 8.3E-06 47.9 9.2 75 384-460 1-80 (263)
347 TIGR01963 PHB_DH 3-hydroxybuty 93.5 0.17 3.7E-06 49.0 6.5 45 381-425 1-46 (255)
348 PRK07832 short chain dehydroge 93.5 0.17 3.8E-06 50.0 6.7 44 382-425 1-45 (272)
349 PRK08229 2-dehydropantoate 2-r 93.5 0.42 9.2E-06 49.2 9.7 33 382-414 3-35 (341)
350 PRK14185 bifunctional 5,10-met 93.5 1.3 2.9E-05 45.0 13.0 122 272-412 52-193 (293)
351 PRK06398 aldose dehydrogenase; 93.5 0.11 2.4E-06 51.1 5.2 39 378-416 3-42 (258)
352 cd04729 NanE N-acetylmannosami 93.5 2.8 6.1E-05 40.5 14.9 119 34-172 25-149 (219)
353 cd05292 LDH_2 A subgroup of L- 93.5 0.42 9.1E-06 48.9 9.5 45 383-427 2-48 (308)
354 PF01791 DeoC: DeoC/LacD famil 93.5 0.46 1E-05 46.6 9.4 145 20-169 51-224 (236)
355 PRK08223 hypothetical protein; 93.4 0.092 2E-06 53.2 4.5 34 379-412 25-59 (287)
356 cd01483 E1_enzyme_family Super 93.4 0.086 1.9E-06 47.4 3.8 31 383-413 1-32 (143)
357 cd02801 DUS_like_FMN Dihydrour 93.3 0.42 9.1E-06 46.3 8.9 93 18-117 50-157 (231)
358 PRK05599 hypothetical protein; 93.3 0.18 4E-06 49.2 6.4 44 382-426 1-45 (246)
359 PF13450 NAD_binding_8: NAD(P) 93.3 0.13 2.9E-06 40.4 4.3 29 386-414 1-29 (68)
360 cd00429 RPE Ribulose-5-phospha 93.3 2.3 5E-05 40.3 13.8 109 25-144 1-113 (211)
361 PRK08264 short chain dehydroge 93.3 0.15 3.2E-06 49.1 5.6 41 379-419 4-46 (238)
362 PRK13581 D-3-phosphoglycerate 93.3 0.18 4E-06 55.5 6.9 93 377-486 136-228 (526)
363 PRK06436 glycerate dehydrogena 93.3 0.14 3.1E-06 52.3 5.7 38 377-414 118-155 (303)
364 PRK08063 enoyl-(acyl carrier p 93.2 0.21 4.5E-06 48.4 6.5 46 380-425 3-50 (250)
365 PRK12747 short chain dehydroge 93.2 0.22 4.8E-06 48.5 6.7 46 380-425 3-50 (252)
366 COG0240 GpsA Glycerol-3-phosph 93.2 0.41 9E-06 49.3 8.8 66 382-447 2-69 (329)
367 PRK06249 2-dehydropantoate 2-r 93.2 0.33 7.1E-06 49.6 8.2 35 381-415 5-39 (313)
368 TIGR01327 PGDH D-3-phosphoglyc 93.2 0.16 3.5E-06 55.9 6.3 94 377-486 134-227 (525)
369 PRK07792 fabG 3-ketoacyl-(acyl 93.2 0.22 4.7E-06 50.6 6.8 49 377-425 8-58 (306)
370 PRK07856 short chain dehydroge 93.2 0.16 3.4E-06 49.6 5.6 39 378-416 3-42 (252)
371 PRK06523 short chain dehydroge 93.1 0.16 3.5E-06 49.6 5.6 39 378-416 6-45 (260)
372 cd01485 E1-1_like Ubiquitin ac 93.1 0.12 2.6E-06 49.6 4.5 35 379-413 17-52 (198)
373 PRK06484 short chain dehydroge 93.1 0.2 4.4E-06 54.5 6.9 48 378-425 266-314 (520)
374 TIGR02415 23BDH acetoin reduct 93.1 0.23 5E-06 48.2 6.7 44 382-425 1-45 (254)
375 PF13738 Pyr_redox_3: Pyridine 93.1 0.14 3.1E-06 48.0 5.0 39 377-415 163-201 (203)
376 PF01262 AlaDh_PNT_C: Alanine 93.1 0.22 4.7E-06 46.3 6.1 45 378-422 17-61 (168)
377 PRK09424 pntA NAD(P) transhydr 93.1 0.2 4.4E-06 54.8 6.7 47 380-427 164-210 (509)
378 PRK08324 short chain dehydroge 93.1 0.22 4.8E-06 56.5 7.4 49 377-425 418-467 (681)
379 PF00070 Pyr_redox: Pyridine n 93.1 0.2 4.3E-06 40.3 5.1 32 383-414 1-32 (80)
380 PLN02616 tetrahydrofolate dehy 93.0 0.98 2.1E-05 47.2 11.3 122 273-413 125-264 (364)
381 TIGR01763 MalateDH_bact malate 93.0 0.64 1.4E-05 47.6 10.0 79 382-460 2-81 (305)
382 KOG1205 Predicted dehydrogenas 93.0 0.25 5.5E-06 50.0 6.9 85 378-468 9-108 (282)
383 PTZ00079 NADP-specific glutama 93.0 0.58 1.3E-05 50.3 9.9 96 353-457 216-327 (454)
384 PRK13813 orotidine 5'-phosphat 93.0 3.8 8.3E-05 39.3 14.9 136 22-171 2-144 (215)
385 cd05290 LDH_3 A subgroup of L- 93.0 0.54 1.2E-05 48.2 9.4 46 383-428 1-48 (307)
386 PLN00141 Tic62-NAD(P)-related 93.0 0.21 4.4E-06 49.0 6.1 42 379-420 15-57 (251)
387 PRK08226 short chain dehydroge 92.9 0.24 5.2E-06 48.5 6.5 44 379-423 4-48 (263)
388 PRK12746 short chain dehydroge 92.9 0.26 5.7E-06 47.9 6.7 46 379-424 4-51 (254)
389 PLN02897 tetrahydrofolate dehy 92.9 2.1 4.5E-05 44.6 13.4 137 256-412 91-246 (345)
390 PRK07370 enoyl-(acyl carrier p 92.9 0.18 4E-06 49.6 5.6 36 379-414 4-42 (258)
391 PRK14041 oxaloacetate decarbox 92.9 11 0.00025 40.9 19.6 210 34-245 23-249 (467)
392 PRK05855 short chain dehydroge 92.9 0.24 5.2E-06 54.1 7.1 48 378-425 312-360 (582)
393 PF13460 NAD_binding_10: NADH( 92.8 0.2 4.4E-06 46.2 5.6 36 384-419 1-37 (183)
394 PLN02712 arogenate dehydrogena 92.8 0.39 8.5E-06 54.4 8.8 37 380-416 51-87 (667)
395 PRK08642 fabG 3-ketoacyl-(acyl 92.8 0.24 5.3E-06 47.9 6.3 46 379-424 3-50 (253)
396 PRK07201 short chain dehydroge 92.8 0.24 5.2E-06 55.5 7.1 48 378-425 368-416 (657)
397 PRK08690 enoyl-(acyl carrier p 92.8 0.23 4.9E-06 49.1 6.2 35 379-413 4-41 (261)
398 TIGR02632 RhaD_aldol-ADH rhamn 92.8 0.26 5.6E-06 56.0 7.4 49 377-425 410-459 (676)
399 PLN02602 lactate dehydrogenase 92.8 0.68 1.5E-05 48.4 9.9 47 382-428 38-86 (350)
400 TIGR00693 thiE thiamine-phosph 92.7 2.6 5.7E-05 39.7 13.2 106 36-172 13-122 (196)
401 PRK06997 enoyl-(acyl carrier p 92.7 0.19 4.2E-06 49.6 5.6 46 379-424 4-55 (260)
402 PRK06924 short chain dehydroge 92.7 0.23 5E-06 48.2 6.0 40 382-421 2-43 (251)
403 PRK08278 short chain dehydroge 92.7 0.27 5.7E-06 48.9 6.6 38 379-416 4-42 (273)
404 TIGR03376 glycerol3P_DH glycer 92.7 0.65 1.4E-05 48.4 9.5 82 383-470 1-98 (342)
405 TIGR01692 HIBADH 3-hydroxyisob 92.7 0.17 3.6E-06 51.1 5.1 37 386-422 1-37 (288)
406 PRK05650 short chain dehydroge 92.7 0.27 5.9E-06 48.5 6.6 44 382-425 1-45 (270)
407 PRK12779 putative bifunctional 92.6 0.14 3E-06 60.2 5.0 35 379-413 304-338 (944)
408 PRK06567 putative bifunctional 92.6 0.17 3.6E-06 59.2 5.5 35 379-413 381-415 (1028)
409 PRK07775 short chain dehydroge 92.6 0.33 7.1E-06 48.2 7.0 46 379-424 8-54 (274)
410 TIGR00736 nifR3_rel_arch TIM-b 92.6 4.6 0.0001 39.8 14.8 133 25-175 69-222 (231)
411 PRK07028 bifunctional hexulose 92.6 2.7 5.8E-05 45.1 14.4 134 23-173 3-138 (430)
412 PRK12481 2-deoxy-D-gluconate 3 92.5 0.24 5.1E-06 48.5 5.9 37 378-414 5-42 (251)
413 TIGR01949 AroFGH_arch predicte 92.5 1.4 3.1E-05 43.8 11.5 153 32-199 32-198 (258)
414 PRK00257 erythronate-4-phospha 92.5 0.32 6.8E-06 51.4 7.0 38 377-414 112-149 (381)
415 PRK06484 short chain dehydroge 92.5 0.26 5.6E-06 53.6 6.7 46 380-425 4-50 (520)
416 PRK10415 tRNA-dihydrouridine s 92.5 4 8.7E-05 42.1 15.1 89 25-118 66-169 (321)
417 PF02254 TrkA_N: TrkA-N domain 92.5 0.35 7.7E-06 41.4 6.2 41 384-424 1-41 (116)
418 PRK13302 putative L-aspartate 92.5 0.27 5.9E-06 49.4 6.3 76 381-467 6-84 (271)
419 cd00945 Aldolase_Class_I Class 92.5 4.6 0.0001 37.4 14.4 92 24-120 49-151 (201)
420 TIGR03217 4OH_2_O_val_ald 4-hy 92.5 9.2 0.0002 39.7 17.7 164 14-191 5-183 (333)
421 PRK07259 dihydroorotate dehydr 92.5 0.7 1.5E-05 47.0 9.4 86 22-117 91-188 (301)
422 COG0334 GdhA Glutamate dehydro 92.4 0.41 8.8E-06 50.6 7.7 55 354-415 187-241 (411)
423 PRK14806 bifunctional cyclohex 92.4 0.46 9.9E-06 54.4 8.8 39 382-420 4-44 (735)
424 PRK09282 pyruvate carboxylase 92.4 12 0.00027 41.9 19.8 210 34-245 24-250 (592)
425 PRK05693 short chain dehydroge 92.4 0.29 6.2E-06 48.4 6.4 40 382-421 2-42 (274)
426 KOG0069 Glyoxylate/hydroxypyru 92.4 0.37 8.1E-06 49.8 7.2 92 377-485 158-249 (336)
427 PRK06482 short chain dehydroge 92.4 0.31 6.8E-06 48.2 6.6 42 382-423 3-45 (276)
428 PRK06153 hypothetical protein; 92.4 0.13 2.8E-06 54.1 4.0 34 379-412 174-208 (393)
429 PRK12748 3-ketoacyl-(acyl-carr 92.4 0.29 6.3E-06 47.8 6.3 35 379-413 3-40 (256)
430 cd06556 ICL_KPHMT Members of t 92.4 3.5 7.5E-05 40.8 13.8 121 68-203 63-201 (240)
431 PRK07985 oxidoreductase; Provi 92.3 0.3 6.6E-06 49.2 6.5 47 378-424 46-95 (294)
432 PF01791 DeoC: DeoC/LacD famil 92.3 2.2 4.9E-05 41.7 12.4 144 37-195 20-191 (236)
433 COG0569 TrkA K+ transport syst 92.3 0.28 6E-06 48.0 5.9 40 382-421 1-40 (225)
434 PRK12769 putative oxidoreducta 92.2 0.17 3.7E-06 57.1 5.0 35 380-414 326-360 (654)
435 PF01494 FAD_binding_3: FAD bi 92.2 0.19 4.1E-06 50.8 4.9 33 383-415 3-35 (356)
436 PRK08263 short chain dehydroge 92.2 0.36 7.8E-06 47.8 6.7 44 381-424 3-47 (275)
437 COG0281 SfcA Malic enzyme [Ene 92.2 0.63 1.4E-05 49.3 8.6 121 258-413 97-234 (432)
438 cd01484 E1-2_like Ubiquitin ac 92.2 0.18 3.9E-06 49.7 4.5 30 383-412 1-31 (234)
439 PF02882 THF_DHG_CYH_C: Tetrah 92.2 0.8 1.7E-05 42.5 8.5 53 354-417 20-73 (160)
440 PRK06483 dihydromonapterin red 92.1 0.33 7.2E-06 46.7 6.3 37 381-417 2-39 (236)
441 COG1052 LdhA Lactate dehydroge 92.1 0.31 6.8E-06 50.3 6.4 88 377-482 142-229 (324)
442 PRK08177 short chain dehydroge 92.1 0.27 5.9E-06 47.1 5.6 40 382-421 2-42 (225)
443 PRK12743 oxidoreductase; Provi 92.1 0.38 8.2E-06 47.1 6.7 45 381-425 2-48 (256)
444 PRK09135 pteridine reductase; 92.1 0.4 8.6E-06 46.1 6.8 45 380-424 5-51 (249)
445 PRK07226 fructose-bisphosphate 92.1 2.7 5.8E-05 42.1 12.8 126 36-168 93-226 (267)
446 TIGR02822 adh_fam_2 zinc-bindi 92.1 0.98 2.1E-05 46.3 10.0 46 380-426 165-210 (329)
447 cd07944 DRE_TIM_HOA_like 4-hyd 92.0 6.3 0.00014 39.5 15.5 149 34-196 18-186 (266)
448 PRK11815 tRNA-dihydrouridine s 92.0 5.1 0.00011 41.5 15.2 91 25-118 66-171 (333)
449 PRK07878 molybdopterin biosynt 92.0 0.18 3.8E-06 53.5 4.4 34 379-412 40-74 (392)
450 PRK07226 fructose-bisphosphate 92.0 2.2 4.8E-05 42.7 12.1 154 32-200 35-203 (267)
451 PRK06701 short chain dehydroge 92.0 0.41 8.8E-06 48.2 6.9 48 377-424 42-91 (290)
452 PRK05708 2-dehydropantoate 2-r 91.9 0.28 6E-06 50.1 5.6 41 382-422 3-43 (305)
453 PRK07424 bifunctional sterol d 91.8 0.37 8E-06 51.4 6.7 42 378-419 175-217 (406)
454 PRK12938 acetyacetyl-CoA reduc 91.8 0.4 8.7E-06 46.3 6.5 45 380-424 2-48 (246)
455 TIGR01949 AroFGH_arch predicte 91.8 4.1 8.8E-05 40.5 13.8 139 23-168 70-222 (258)
456 cd04735 OYE_like_4_FMN Old yel 91.8 1.8 3.9E-05 45.2 11.7 90 30-119 134-256 (353)
457 cd00564 TMP_TenI Thiamine mono 91.8 3.5 7.6E-05 38.2 12.7 107 36-172 12-121 (196)
458 PRK05581 ribulose-phosphate 3- 91.8 4.6 0.0001 38.7 13.8 110 24-144 4-117 (220)
459 PRK06128 oxidoreductase; Provi 91.8 0.38 8.3E-06 48.5 6.5 48 378-425 52-102 (300)
460 TIGR01381 E1_like_apg7 E1-like 91.8 0.2 4.2E-06 56.0 4.6 34 379-412 336-370 (664)
461 PRK06953 short chain dehydroge 91.8 0.34 7.5E-06 46.3 5.9 41 382-422 2-43 (222)
462 PRK14031 glutamate dehydrogena 91.7 1 2.2E-05 48.6 9.8 51 354-411 208-259 (444)
463 PRK14168 bifunctional 5,10-met 91.7 2.1 4.5E-05 43.7 11.6 140 256-412 38-197 (297)
464 PRK06847 hypothetical protein; 91.7 0.22 4.7E-06 51.6 4.7 34 381-414 4-37 (375)
465 PRK05808 3-hydroxybutyryl-CoA 91.7 0.42 9E-06 48.0 6.6 38 382-419 4-41 (282)
466 PRK05557 fabG 3-ketoacyl-(acyl 91.7 0.48 1E-05 45.4 6.9 46 379-424 3-50 (248)
467 PRK14030 glutamate dehydrogena 91.7 1.4 3.1E-05 47.4 10.9 96 354-457 208-318 (445)
468 PRK14040 oxaloacetate decarbox 91.7 14 0.0003 41.5 19.0 226 13-245 6-251 (593)
469 PRK12859 3-ketoacyl-(acyl-carr 91.6 0.43 9.3E-06 46.8 6.5 35 378-412 3-40 (256)
470 PRK08309 short chain dehydroge 91.6 0.52 1.1E-05 44.3 6.7 42 383-424 2-43 (177)
471 PRK13304 L-aspartate dehydroge 91.5 0.35 7.6E-06 48.4 5.9 69 383-463 3-74 (265)
472 PLN02172 flavin-containing mon 91.5 0.26 5.6E-06 53.4 5.2 36 379-414 8-43 (461)
473 PRK01710 murD UDP-N-acetylmura 91.5 0.44 9.5E-06 51.4 7.0 36 379-414 12-47 (458)
474 COG0686 Ald Alanine dehydrogen 91.5 0.68 1.5E-05 47.3 7.7 95 379-486 166-266 (371)
475 PRK03369 murD UDP-N-acetylmura 91.5 0.38 8.2E-06 52.4 6.5 40 379-418 10-49 (488)
476 PRK06550 fabG 3-ketoacyl-(acyl 91.4 0.28 6E-06 47.1 4.9 37 379-415 3-40 (235)
477 PRK07411 hypothetical protein; 91.4 0.22 4.8E-06 52.8 4.4 34 379-412 36-70 (390)
478 cd08230 glucose_DH Glucose deh 91.4 0.43 9.3E-06 49.3 6.5 47 380-427 172-221 (355)
479 TIGR00126 deoC deoxyribose-pho 91.4 10 0.00022 36.9 15.5 145 32-190 14-173 (211)
480 CHL00200 trpA tryptophan synth 91.3 8.2 0.00018 38.8 15.3 126 27-189 20-167 (263)
481 PLN02334 ribulose-phosphate 3- 91.3 6.7 0.00015 38.2 14.5 113 21-144 5-123 (229)
482 TIGR03315 Se_ygfK putative sel 91.3 0.25 5.3E-06 58.3 5.0 34 380-413 536-569 (1012)
483 PRK08163 salicylate hydroxylas 91.3 0.26 5.6E-06 51.5 4.8 35 381-415 4-38 (396)
484 PTZ00345 glycerol-3-phosphate 91.3 0.53 1.1E-05 49.5 7.0 87 381-473 11-112 (365)
485 PRK12367 short chain dehydroge 91.3 0.39 8.5E-06 47.3 5.8 37 378-414 11-48 (245)
486 PRK06928 pyrroline-5-carboxyla 91.3 1.3 2.9E-05 44.5 9.7 41 383-423 3-48 (277)
487 PRK09414 glutamate dehydrogena 91.3 1.3 2.9E-05 47.7 10.1 96 354-459 212-320 (445)
488 COG1063 Tdh Threonine dehydrog 91.2 0.4 8.6E-06 50.0 6.1 42 381-423 169-211 (350)
489 PRK12827 short chain dehydroge 91.2 0.49 1.1E-05 45.5 6.4 46 379-424 4-54 (249)
490 PRK06463 fabG 3-ketoacyl-(acyl 91.2 0.48 1E-05 46.3 6.3 44 378-421 4-49 (255)
491 cd01339 LDH-like_MDH L-lactate 91.2 0.71 1.5E-05 47.0 7.7 41 384-424 1-42 (300)
492 PRK06171 sorbitol-6-phosphate 91.1 0.31 6.7E-06 47.8 5.0 40 378-417 6-46 (266)
493 PRK12439 NAD(P)H-dependent gly 91.1 1.2 2.5E-05 46.3 9.4 40 382-422 8-47 (341)
494 COG0821 gcpE 1-hydroxy-2-methy 91.1 0.85 1.8E-05 46.8 8.0 61 136-198 19-79 (361)
495 PF00743 FMO-like: Flavin-bind 91.1 0.26 5.6E-06 54.4 4.7 33 382-414 2-34 (531)
496 TIGR00742 yjbN tRNA dihydrouri 91.1 7.6 0.00017 40.0 15.2 96 22-121 54-164 (318)
497 PF10100 DUF2338: Uncharacteri 91.0 1 2.2E-05 47.5 8.7 46 382-427 2-48 (429)
498 PRK10637 cysG siroheme synthas 91.0 0.46 9.9E-06 51.4 6.5 39 377-415 8-46 (457)
499 PRK05718 keto-hydroxyglutarate 91.0 3.7 8.1E-05 39.8 12.1 118 26-172 17-134 (212)
500 TIGR03589 PseB UDP-N-acetylglu 91.0 0.5 1.1E-05 48.4 6.5 45 380-424 3-50 (324)
No 1
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=100.00 E-value=1.3e-100 Score=827.88 Aligned_cols=467 Identities=73% Similarity=1.088 Sum_probs=406.8
Q ss_pred ccccccccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCC
Q 011136 9 ASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIW 88 (493)
Q Consensus 9 ~~~~~~~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~ 88 (493)
||.---|||+|++++|+||+|+++++.++.+.++++....++|+||||+|+|.+..+.+++..+++..++|+|||+|+++
T Consensus 8 ~~~~~~~~~~~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~ 87 (529)
T PLN02520 8 ASDDLQGSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKW 87 (529)
T ss_pred hhhhhhcccccccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHH
Confidence 45555689999999999999999999999999998887779999999999998766556677777777899999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 011136 89 EGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD 168 (493)
Q Consensus 89 eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaD 168 (493)
|||.++.++++|+++|+.+++.++||||||++..++..+.+...+.+++|||+|||||++||+.+++.+++++|+++|||
T Consensus 88 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaD 167 (529)
T PLN02520 88 EGGQYEGDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGAD 167 (529)
T ss_pred HCCCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999988766666666678999999999999999999999999999999999
Q ss_pred EEEEEeecCCHhHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhccc
Q 011136 169 IVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ 248 (493)
Q Consensus 169 IvKia~~a~s~~D~~~l~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~~ 248 (493)
|+|||+||++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++.+.++||||++++++++++++.+
T Consensus 168 i~Kia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~ 247 (529)
T PLN02520 168 IVKIATTALDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQ 247 (529)
T ss_pred EEEEecCCCCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhc
Confidence 99999999999999999998777789999999999999999999999999999999865579999999999999999999
Q ss_pred cCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHH
Q 011136 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV 328 (493)
Q Consensus 249 ~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~ 328 (493)
+.+++++|+|+|+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||+++++++|++|+.
T Consensus 248 ~~~~t~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~ 327 (529)
T PLN02520 248 IGPDTKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPI 327 (529)
T ss_pred ccCCceEEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE
Q 011136 329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV 408 (493)
Q Consensus 329 A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~ 408 (493)
|+.+||||||+++.++|+|+||||||.||+.+|++.+... +..+..+.++++|+++|+|+||+|++++++|++.|++|+
T Consensus 328 A~~iGAVNTvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~-~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~ 406 (529)
T PLN02520 328 AKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLRAS-GSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV 406 (529)
T ss_pred HHHhCCceEEEEeCCCCEEEEEcccHHHHHHHHHhhhccc-ccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE
Confidence 9999999999985227999999999999999998643110 000001245778999999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136 409 IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK 487 (493)
Q Consensus 409 v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
++||+.++++++++.+.... .-+.++.+.++.+.+|++|+||+||.|+.-..++.. ..+-+..+|+|-
T Consensus 407 i~nR~~e~a~~la~~l~~~~---------~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~--~~l~~~~~v~D~ 474 (529)
T PLN02520 407 IANRTYERAKELADAVGGQA---------LTLADLENFHPEEGMILANTTSVGMQPNVDETPISK--HALKHYSLVFDA 474 (529)
T ss_pred EEcCCHHHHHHHHHHhCCce---------eeHhHhhhhccccCeEEEecccCCCCCCCCCCcccH--hhCCCCCEEEEe
Confidence 99999999999998764211 111222233445678999999999987543223222 223456778774
No 2
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=100.00 E-value=2.4e-88 Score=724.53 Aligned_cols=401 Identities=28% Similarity=0.410 Sum_probs=356.4
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 011136 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL 104 (493)
Q Consensus 25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (493)
|||||+++++.+|++++++.+. .++|+||||+|+|++.++.+ +..+++..+.|++ |+|+++ ++++++|++++
T Consensus 1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~~-~~~l~~~~~~pil-T~R~~~-----~~~~~~~~~~l 72 (477)
T PRK09310 1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDLE-LKKLIELAPIPIL-TWKKHE-----SCSQAAWIDKM 72 (477)
T ss_pred CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHHH-HHHHHhcCCCceE-EeccCc-----cCCHHHHHHHH
Confidence 6999999999999999999875 67999999999998765443 6777664456766 999976 45789999999
Q ss_pred HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHHH
Q 011136 105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVAR 184 (493)
Q Consensus 105 ~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~ 184 (493)
+.+++++|||||||++.+++.++++..+ ++++|||+|||||+ .+++.+++++|+++||||+|||+||++.+|+++
T Consensus 73 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~----~~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~ 147 (477)
T PRK09310 73 QSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSE----HEDIIQLYNEMLASAADYYKIAVSSSSSTDLLN 147 (477)
T ss_pred HHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCC----cchHHHHHHHHHHcCCCEEEEeeCCCCHHHHHH
Confidence 9999999999999999998888888654 46999999999994 257999999999999999999999999999999
Q ss_pred HHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhccccCCCceEEEeecCCcc
Q 011136 185 VFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVG 264 (493)
Q Consensus 185 l~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~~~~~~~~~~~viG~pi~ 264 (493)
+++++.....|+|+|+||+.|++||+++++|||++||++...+.++||||+++++++ .|++.+++++|++|||+|+||+
T Consensus 148 ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~pi~ 226 (477)
T PRK09310 148 IIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVD 226 (477)
T ss_pred HHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCCcc
Confidence 999988778899999999999999999999999999999876545799999999998 5788899889999999999999
Q ss_pred ccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec
Q 011136 265 HSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ 342 (493)
Q Consensus 265 hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~ 342 (493)
||+||.|||++|+++|+|+.|.++++ +++.++++.++.++|.|+|||||||++|++++|++|+.|+.+||||||+++
T Consensus 227 hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~~- 305 (477)
T PRK09310 227 RSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR- 305 (477)
T ss_pred cccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEee-
Confidence 99999999999999999999999988 479999999999999999999999999999999999999999999999987
Q ss_pred cCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 343 SDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 343 ~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
+|+|+||||||.||+.+|++. +.++++++++|+|+||+|++++++|.+.|++|+++||+.++++++++
T Consensus 306 -~g~l~G~NTD~~G~~~~l~~~-----------~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~ 373 (477)
T PRK09310 306 -NGKIEGYNTDGEGLFSLLKQK-----------NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALAS 373 (477)
T ss_pred -CCEEEEEecCHHHHHHHHHhc-----------CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 999999999999999999753 14567899999999999999999999999999999999999999988
Q ss_pred HhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCc
Q 011136 423 LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNH 463 (493)
Q Consensus 423 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~ 463 (493)
.++....+ +.++. .. .+.++++|+||.|++
T Consensus 374 ~~~~~~~~---------~~~~~-~l-~~~DiVInatP~g~~ 403 (477)
T PRK09310 374 RCQGKAFP---------LESLP-EL-HRIDIIINCLPPSVT 403 (477)
T ss_pred Hhccceec---------hhHhc-cc-CCCCEEEEcCCCCCc
Confidence 65422111 01111 12 467899999999996
No 3
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=1.2e-52 Score=415.26 Aligned_cols=235 Identities=28% Similarity=0.466 Sum_probs=211.5
Q ss_pred cccccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch----hHHHHHHhhC-CCcEEEEecc
Q 011136 12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR----ENIKTLIKES-PVPTLFTYRP 86 (493)
Q Consensus 12 ~~~~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~ 86 (493)
+|+++-.+..++|+||+||.+++.+|++++++++...++|+||||+|+|.++++. +.+..+++.. ++|+|||+|+
T Consensus 4 ~~~~~~~~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~ 83 (253)
T PRK02412 4 VTVKNLVIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRT 83 (253)
T ss_pred eEEeceEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 3678888999999999999999999999999988778999999999999875432 2344455543 6899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 011136 87 IWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA 164 (493)
Q Consensus 87 ~~eGG~~~~~~~~~~~ll~~~l~~~-~dyIDIEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~ 164 (493)
++|||.++.++++|+++|+.+++++ |||||||+..+++.++++.. ++++++|||+|||+|+.||+.+++.+++++|++
T Consensus 84 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~ 163 (253)
T PRK02412 84 AKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMES 163 (253)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999998888887764 467899999999999999999999999999999
Q ss_pred cCCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHh
Q 011136 165 SGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD 239 (493)
Q Consensus 165 ~gaDIvKia~~a~s~~D~~~l~~~~~~-----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~ 239 (493)
+||||+|+|+||++.+|+++++++..+ .+.|+|+|+||+.|++||+++++|||++||++++++ +||||+++++
T Consensus 164 ~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~--sAPGQ~~~~e 241 (253)
T PRK02412 164 LGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKA--SAPGQISVED 241 (253)
T ss_pred hCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCC--CCCCCCCHHH
Confidence 999999999999999999999998643 468999999999999999999999999999999874 9999999999
Q ss_pred HHHHhhccc
Q 011136 240 LLDLYNFRQ 248 (493)
Q Consensus 240 l~~~~~~~~ 248 (493)
++++++...
T Consensus 242 l~~i~~~l~ 250 (253)
T PRK02412 242 LRRILEILH 250 (253)
T ss_pred HHHHHHHhc
Confidence 999998543
No 4
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-51 Score=408.38 Aligned_cols=220 Identities=32% Similarity=0.452 Sum_probs=184.7
Q ss_pred cCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhc
Q 011136 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD 326 (493)
Q Consensus 249 ~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 326 (493)
++.++++|+|||+||+||+||.|||++|+++|+++.|.+|+++ +|+++++.++.+++.|+|||||||+++++++|++|
T Consensus 2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~ 81 (283)
T COG0169 2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS 81 (283)
T ss_pred CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence 4567899999999999999999999999999999999999994 99999999999999999999999999999999999
Q ss_pred HHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-
Q 011136 327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA- 405 (493)
Q Consensus 327 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~- 405 (493)
+.|+.+||||||++++ +|+|+||||||+||..+|++... ....++++++|+||||||||++++|++.|+
T Consensus 82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~~---------~~~~~~~~vlilGAGGAarAv~~aL~~~g~~ 151 (283)
T COG0169 82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL---------PVDVTGKRVLILGAGGAARAVAFALAEAGAK 151 (283)
T ss_pred HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcCC---------CcccCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 9999999999999982 49999999999999999987421 144568999999999999999999999998
Q ss_pred eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEee
Q 011136 406 RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVM 485 (493)
Q Consensus 406 ~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~ 485 (493)
+|+|+|||.+|+++|++.+..... .+......+.....+++|+||+||+||.+..-.+... ...+-++.+|+
T Consensus 152 ~i~V~NRt~~ra~~La~~~~~~~~------~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~ 223 (283)
T COG0169 152 RITVVNRTRERAEELADLFGELGA------AVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVP--AELLPKGAIVY 223 (283)
T ss_pred EEEEEeCCHHHHHHHHHHhhhccc------ccccccccccccccccCEEEECCCCCCCCCCCCCCCc--HHhcCcCCEEE
Confidence 999999999999999998885431 0111011011111158999999999999875222233 44556888888
Q ss_pred e
Q 011136 486 E 486 (493)
Q Consensus 486 ~ 486 (493)
|
T Consensus 224 D 224 (283)
T COG0169 224 D 224 (283)
T ss_pred E
Confidence 8
No 5
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=100.00 E-value=7.9e-51 Score=396.78 Aligned_cols=217 Identities=37% Similarity=0.608 Sum_probs=192.6
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHH----HHHHh-hCCCcEEEEeccCCCCCCCCCCHHH
Q 011136 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENI----KTLIK-ESPVPTLFTYRPIWEGGQYDGDENE 99 (493)
Q Consensus 25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l----~~l~~-~~~~PiI~T~R~~~eGG~~~~~~~~ 99 (493)
+||||+++++++++..+++++ ..|+|+||||+|+|.+..+.+.+ +.++. ..++|+|||+|+++|||.++.++++
T Consensus 1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~ 79 (228)
T TIGR01093 1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEE 79 (228)
T ss_pred CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence 589999999999999999987 78999999999999765432222 22221 1478999999999999999999999
Q ss_pred HHHHHHHH-HHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 011136 100 RVDVLRLA-MELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177 (493)
Q Consensus 100 ~~~ll~~~-l~~~~dyIDIEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~ 177 (493)
|+++++++ .+.+|||||||+..+++..+++.. ++++++|||+|||+|++||+.+++.+++++|+++||||+|+|+||+
T Consensus 80 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~ 159 (228)
T TIGR01093 80 YLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN 159 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence 99999998 577799999999999888887764 4578999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHh
Q 011136 178 DITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244 (493)
Q Consensus 178 s~~D~~~l~~~~~~----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~ 244 (493)
+.+|+++++++..+ .++|+|+|+||+.|++||++|++|||++||++++. ++||||++++++++++
T Consensus 160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~--~sApGQ~~~~~l~~~~ 228 (228)
T TIGR01093 160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGK--ASAPGQISVDDLRELL 228 (228)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCC--CCCCCCcCHHHHHhhC
Confidence 99999999998754 25799999999999999999999999999999976 4999999999999864
No 6
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=100.00 E-value=1.1e-50 Score=394.76 Aligned_cols=217 Identities=39% Similarity=0.645 Sum_probs=184.5
Q ss_pred EEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc---hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 011136 27 CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP---RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV 103 (493)
Q Consensus 27 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l 103 (493)
||||+++|.++++++++++...++|+||||+|+|.+.+. .+.++.+++..++|+|||+|+++|||.+..++++|+++
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l 80 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL 80 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence 999999999999999999866699999999999985322 46788888888999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHH
Q 011136 104 LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVA 183 (493)
Q Consensus 104 l~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~ 183 (493)
|+.+++.||||||||++..++........+.+++|||+|||+|+.||+++++.+++++|.++||||+|+|+++++.+|++
T Consensus 81 l~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~ 160 (224)
T PF01487_consen 81 LERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVL 160 (224)
T ss_dssp HHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHH
T ss_pred HHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHH
Confidence 99999999999999999555444333333478999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC----CCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136 184 RVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (493)
Q Consensus 184 ~l~~~~~~~----~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~ 245 (493)
++++++.+. +.|+|+|+||+.|++||+++++|||++||+..++ ++||||+++++++++|+
T Consensus 161 ~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~--~sApGQl~~~~l~~~~~ 224 (224)
T PF01487_consen 161 RLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGE--ASAPGQLTLEELREILH 224 (224)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS---SSTT-EBHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCC--CCCCCCCcHHHHHHHhC
Confidence 999986653 6899999999999999999999999999997765 59999999999999875
No 7
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-49 Score=382.55 Aligned_cols=222 Identities=32% Similarity=0.537 Sum_probs=198.8
Q ss_pred CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC-CchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHH
Q 011136 23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF-NPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENER 100 (493)
Q Consensus 23 ~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~ 100 (493)
.|+||+|+.+.+.+++..+++..+..++|++|||+|+|... +..+....+++. ...|+|||+|+.+|||.|+.++++|
T Consensus 1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~ 80 (231)
T COG0710 1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEY 80 (231)
T ss_pred CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHH
Confidence 48999999999999999999999899999999999999821 113344455554 3669999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 011136 101 VDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI 179 (493)
Q Consensus 101 ~~ll~~~l~~~-~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~ 179 (493)
++++..+++.+ |+|||||+..+.+..+++... .++.++|+|||||++||+++++.+++.+|.++|+||+|+|+||++.
T Consensus 81 i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~-~~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~ 159 (231)
T COG0710 81 IELLKKLAELNGPDYIDIELSSPEDDVKEIIKF-AKKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSK 159 (231)
T ss_pred HHHHHHHHhhcCCCEEEEEccCcchhHHHHHhc-cccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCH
Confidence 99999999986 999999999998877777653 2344499999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcc---CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhcc
Q 011136 180 TDVARVFQITVH---SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR 247 (493)
Q Consensus 180 ~D~~~l~~~~~~---~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~ 247 (493)
+|++++++++.. ...|+|+||||+.|++||+++++|||++||+++.++ +||||++++++++++...
T Consensus 160 ~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~--sAPGQi~v~~l~~~~~~l 228 (231)
T COG0710 160 EDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKP--SAPGQISVDELRKILTLL 228 (231)
T ss_pred HHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCC--CCCCCCCHHHHHHHHHHh
Confidence 999999999775 689999999999999999999999999999999984 999999999999988643
No 8
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=100.00 E-value=1.2e-48 Score=380.81 Aligned_cols=215 Identities=37% Similarity=0.606 Sum_probs=192.6
Q ss_pred EEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCCCC---chhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 011136 25 LICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFN---PRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER 100 (493)
Q Consensus 25 ~Icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~ 100 (493)
+||+||.++ +.++....++... |+|+||||+|+|.+.. ..+.++.+++..+.|+|||+|+++|||.+..++++|
T Consensus 1 ~i~~~i~~~~~~~e~~~~~~~~~--~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~ 78 (225)
T cd00502 1 KICVPLTGPDLLEEALSLLELLL--GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEY 78 (225)
T ss_pred CEEEEecCCCCHHHHHHHHHHhc--CCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHH
Confidence 589999999 9999988877643 8999999999998642 245677888777799999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 011136 101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI 179 (493)
Q Consensus 101 ~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~ 179 (493)
+++++.++++||||||||++. +..+++. ..+++++|||+|||+|++||+.+++.+++++|.++||||+|+|++|++.
T Consensus 79 ~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~ 156 (225)
T cd00502 79 LELLEEALKLGPDYVDIELDS--ALLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSI 156 (225)
T ss_pred HHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 999999999999999999987 3344444 3457899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccC----CCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136 180 TDVARVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (493)
Q Consensus 180 ~D~~~l~~~~~~~----~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~ 245 (493)
+|+++++++.... +.|+|+|+||+.|++||++++.|||++||+++++ ++||||+++++++++++
T Consensus 157 ~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~--~sApGQ~~~~~l~~~~~ 224 (225)
T cd00502 157 EDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPE--PSAPGQLSVEELKQALS 224 (225)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCC--CCCCCCcCHHHHHHHHh
Confidence 9999999986543 4699999999999999999999999999999987 49999999999999875
No 9
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=100.00 E-value=4.4e-49 Score=395.32 Aligned_cols=215 Identities=23% Similarity=0.288 Sum_probs=175.9
Q ss_pred CceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc-------ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhh
Q 011136 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE 324 (493)
Q Consensus 252 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~ 324 (493)
++++|||||+||+||+||.|||++|+++|+|+.|.++++ ++|+++++.++.++|.|+|||||||+++++++|+
T Consensus 3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~ 82 (283)
T PRK14027 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE 82 (283)
T ss_pred CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence 578999999999999999999999999999999999995 4799999999989999999999999999999999
Q ss_pred hcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCC
Q 011136 325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG 404 (493)
Q Consensus 325 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g 404 (493)
+++.|+.+||||||+++. +|+|+||||||.||+++|++.. .+.++|+++|+||||+|||++++|.++|
T Consensus 83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~~-----------~~~~~k~vlilGaGGaarAi~~aL~~~g 150 (283)
T PRK14027 83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-----------PNAKLDSVVQVGAGGVGNAVAYALVTHG 150 (283)
T ss_pred CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhcC-----------cCcCCCeEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999998742 8999999999999999997532 2456899999999999999999999999
Q ss_pred C-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecc--cccCCceEEEEeccccCCchhhHhhhhhHHHHhhccc
Q 011136 405 A-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILL--FTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNS 481 (493)
Q Consensus 405 ~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~--~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~ 481 (493)
+ +|+|+|||.+|+++|++.+....-. ..+.+. +.. ..-..+++|++|+||+||+++.- .++. +..+-++
T Consensus 151 ~~~i~i~nR~~~ka~~La~~~~~~~~~----~~~~~~-~~~~~~~~~~~~divINaTp~Gm~~~~~-~~~~--~~~l~~~ 222 (283)
T PRK14027 151 VQKLQVADLDTSRAQALADVINNAVGR----EAVVGV-DARGIEDVIAAADGVVNATPMGMPAHPG-TAFD--VSCLTKD 222 (283)
T ss_pred CCEEEEEcCCHHHHHHHHHHHhhccCc----ceEEec-CHhHHHHHHhhcCEEEEcCCCCCCCCCC-CCCC--HHHcCCC
Confidence 9 9999999999999999987532210 011111 110 11124679999999999986421 1222 2223356
Q ss_pred eEeee
Q 011136 482 YVVME 486 (493)
Q Consensus 482 ~~~~~ 486 (493)
.+|.|
T Consensus 223 ~~v~D 227 (283)
T PRK14027 223 HWVGD 227 (283)
T ss_pred cEEEE
Confidence 67776
No 10
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=100.00 E-value=5.2e-49 Score=395.88 Aligned_cols=198 Identities=28% Similarity=0.413 Sum_probs=170.2
Q ss_pred cCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhc
Q 011136 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD 326 (493)
Q Consensus 249 ~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 326 (493)
++.+|++|+|+|+||+||+||.|||++|+++|+|+.|.++++ ++|+++++.++..+|.|+|||||||++|++++|++|
T Consensus 3 ~~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~ 82 (288)
T PRK12749 3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELT 82 (288)
T ss_pred cCCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCC
Confidence 346788999999999999999999999999999999999998 479999999988899999999999999999999999
Q ss_pred HHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-
Q 011136 327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA- 405 (493)
Q Consensus 327 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~- 405 (493)
+.|+.+||||||+++ +|+|+||||||.||+.+|++. +.++++|+++||||||+|||++++|+..|+
T Consensus 83 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-----------~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~ 149 (288)
T PRK12749 83 PAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----------GFDIKGKTMVLLGAGGASTAIGAQGAIEGLK 149 (288)
T ss_pred HHHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-----------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCC
Confidence 999999999999876 899999999999999999752 145678999999999999999999999998
Q ss_pred eEEEEeCC---hHHHHHHHHHhhhhhhcccccceEEEEeeccc--cc---CCceEEEEeccccCCchh
Q 011136 406 RVVIANRT---YGESLTFLRLMSWLLLNTLLFDSVIVIRILLF--TW---HLKFFIAANIIHLGNHLE 465 (493)
Q Consensus 406 ~i~v~~R~---~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~--~~---~~~~~i~~n~tplG~~~~ 465 (493)
+|+|+||+ .+|+++|++.++..... .+.+ .++++ .+ ..+++|++|+||+||.|+
T Consensus 150 ~i~i~nRt~~~~~ka~~la~~~~~~~~~-----~~~~-~~~~~~~~l~~~~~~aDivINaTp~Gm~~~ 211 (288)
T PRK12749 150 EIKLFNRRDEFFDKALAFAQRVNENTDC-----VVTV-TDLADQQAFAEALASADILTNGTKVGMKPL 211 (288)
T ss_pred EEEEEeCCccHHHHHHHHHHHhhhccCc-----eEEE-echhhhhhhhhhcccCCEEEECCCCCCCCC
Confidence 99999999 46999999987643210 1111 11111 01 135799999999999874
No 11
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=2.4e-48 Score=390.78 Aligned_cols=216 Identities=23% Similarity=0.257 Sum_probs=178.8
Q ss_pred CCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc-------ccHHHHHHHhcCCCCCeEEEccCchHHHhhhh
Q 011136 250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCC 322 (493)
Q Consensus 250 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~ 322 (493)
+..+++|+|+|+||+||+||.|||++|+++|+|+.|.++++ ++|+++++.++..+|.|+|||||||+++++++
T Consensus 2 ~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~ 81 (284)
T PRK12549 2 SRPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHL 81 (284)
T ss_pred CccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHh
Confidence 34578999999999999999999999999999999999986 37999999998899999999999999999999
Q ss_pred hhhcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHh
Q 011136 323 DEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA 402 (493)
Q Consensus 323 d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~ 402 (493)
|++|+.|+.+||||||+++ +|+|+||||||.||+.+|++.. ..+++++|+|||+||+||+++++|..
T Consensus 82 D~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlIlGaGGaaraia~aL~~ 148 (284)
T PRK12549 82 DELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-----------PDASLERVVQLGAGGAGAAVAHALLT 148 (284)
T ss_pred ccCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-----------cCccCCEEEEECCcHHHHHHHHHHHH
Confidence 9999999999999999887 8999999999999999997532 24568999999999999999999999
Q ss_pred CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccc
Q 011136 403 KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNS 481 (493)
Q Consensus 403 ~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~ 481 (493)
.|+ +|+|+||+.+|+++|++.+...+.. ..+..+.++.+. ..+.+|++|+||+||+++.- .++.. ..+-++
T Consensus 149 ~G~~~I~I~nR~~~ka~~la~~l~~~~~~----~~~~~~~~~~~~-~~~aDiVInaTp~Gm~~~~~-~~~~~--~~l~~~ 220 (284)
T PRK12549 149 LGVERLTIFDVDPARAAALADELNARFPA----ARATAGSDLAAA-LAAADGLVHATPTGMAKHPG-LPLPA--ELLRPG 220 (284)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhhCCC----eEEEeccchHhh-hCCCCEEEECCcCCCCCCCC-CCCCH--HHcCCC
Confidence 999 9999999999999999987643311 112222222222 25689999999999987531 12222 223456
Q ss_pred eEeee
Q 011136 482 YVVME 486 (493)
Q Consensus 482 ~~~~~ 486 (493)
.+|+|
T Consensus 221 ~~v~D 225 (284)
T PRK12549 221 LWVAD 225 (284)
T ss_pred cEEEE
Confidence 67776
No 12
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=3.3e-47 Score=372.26 Aligned_cols=220 Identities=25% Similarity=0.387 Sum_probs=183.5
Q ss_pred CcEEEEeecCCC-HHHH-HHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhh-CCCcEEEEeccCCCCCCCCCC
Q 011136 23 PTLICVPIMGES-VDKM-VVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKE-SPVPTLFTYRPIWEGGQYDGD 96 (493)
Q Consensus 23 ~~~Icv~l~~~~-~~e~-~~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~ 96 (493)
.+.||+++.... +++. ...++.. ..++|+||||+|+|.+.+.. +.+..+++. .+.|+|||+|+++|||.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~~ 81 (238)
T PRK13575 3 HVEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTVDQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFT 81 (238)
T ss_pred ceeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCHHHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCCC
Confidence 456677777663 6665 4444443 56899999999999875432 123333332 468999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEEccc--ccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136 97 ENERVDVLRLAMELG-ADYIDVELQV--AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (493)
Q Consensus 97 ~~~~~~ll~~~l~~~-~dyIDIEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi 172 (493)
+++|.++++.+...+ +||||||++. +.+..+++. ..++.+++||+|||||++||+.+++.+++++|+++||||+|+
T Consensus 82 ~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~Ki 161 (238)
T PRK13575 82 NDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVKL 161 (238)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 999999998887765 8999999986 344455554 345679999999999999999999999999999999999999
Q ss_pred EeecCCHhHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136 173 ATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (493)
Q Consensus 173 a~~a~s~~D~~~l~~~~~~----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~ 245 (493)
|+||++.+|+++|++++.+ .+.|+|+|+||+.|++||+++++|||++||++++++ +||||+++++++++++
T Consensus 162 Av~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~--sAPGQi~v~~l~~i~~ 236 (238)
T PRK13575 162 AVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEP--QAPGQIHVTDLKAQVT 236 (238)
T ss_pred EecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCC--CCCCCCCHHHHHHHHH
Confidence 9999999999999998643 367999999999999999999999999999999874 9999999999999876
No 13
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-47 Score=383.58 Aligned_cols=220 Identities=28% Similarity=0.345 Sum_probs=177.7
Q ss_pred cCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhc
Q 011136 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD 326 (493)
Q Consensus 249 ~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 326 (493)
++.++++|+|||+||+||+||.|||++|+++|+|+.|.++++ ++|+++++.++..+|+|+|||||||++|++++|++|
T Consensus 5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~ 84 (289)
T PRK12548 5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS 84 (289)
T ss_pred cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence 456778999999999999999999999999999999999998 479999999988999999999999999999999999
Q ss_pred HHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-
Q 011136 327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA- 405 (493)
Q Consensus 327 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~- 405 (493)
+.|+.+||||||+++ +|+|+||||||.||+.+|++.. ..+++|+++|+||||+|||++++|++.|+
T Consensus 85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlI~GAGGagrAia~~La~~G~~ 151 (289)
T PRK12548 85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREHG-----------VDVKGKKLTVIGAGGAATAIQVQCALDGAK 151 (289)
T ss_pred HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhcC-----------CCcCCCEEEEECCcHHHHHHHHHHHHCCCC
Confidence 999999999999887 8999999999999999997532 34678999999999999999999999999
Q ss_pred eEEEEeCCh---HHHHHHHHHhhhhhhcccccceEEEEeeccc--c---cCCceEEEEeccccCCchhhHhhhhhHHHHh
Q 011136 406 RVVIANRTY---GESLTFLRLMSWLLLNTLLFDSVIVIRILLF--T---WHLKFFIAANIIHLGNHLEWVTAAFNLFFYL 477 (493)
Q Consensus 406 ~i~v~~R~~---~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~--~---~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~ 477 (493)
+|+|+||+. ++++++++.+...... -.+.. .++.+ . .-.+.+|++|+||+||+|+.-..+... +..
T Consensus 152 ~V~I~~R~~~~~~~a~~l~~~l~~~~~~----~~~~~-~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~-~~~ 225 (289)
T PRK12548 152 EITIFNIKDDFYERAEQTAEKIKQEVPE----CIVNV-YDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKD-TSV 225 (289)
T ss_pred EEEEEeCCchHHHHHHHHHHHHhhcCCC----ceeEE-echhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCc-HHh
Confidence 799999997 8999998877432210 01111 11110 1 113468999999999987532222201 122
Q ss_pred hccceEeeec
Q 011136 478 TCNSYVVMEK 487 (493)
Q Consensus 478 ~~~~~~~~~~ 487 (493)
+-++.+|.|-
T Consensus 226 l~~~~~v~D~ 235 (289)
T PRK12548 226 FRKDLVVADT 235 (289)
T ss_pred cCCCCEEEEe
Confidence 2356677773
No 14
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=6.3e-47 Score=377.50 Aligned_cols=208 Identities=22% Similarity=0.296 Sum_probs=173.6
Q ss_pred ccCCCceE-EEeecCCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhc
Q 011136 248 QMGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD 326 (493)
Q Consensus 248 ~~~~~~~~-~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 326 (493)
+++++|++ |+|+|+| ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++++|++|
T Consensus 4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~ 81 (272)
T PRK12550 4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD 81 (272)
T ss_pred cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence 45677884 9999999 77889999999999999999999998899999999998999999999999999999999999
Q ss_pred HHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-
Q 011136 327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA- 405 (493)
Q Consensus 327 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~- 405 (493)
+.|+.+||||||+++ +|+|+||||||.||+.+|++. . .. .+++++|+||||+|||++++|.+.|+
T Consensus 82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-~----------~~-~~~~vlilGaGGaarAi~~aL~~~g~~ 147 (272)
T PRK12550 82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY-Q----------VP-PDLVVALRGSGGMAKAVAAALRDAGFT 147 (272)
T ss_pred HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc-C----------CC-CCCeEEEECCcHHHHHHHHHHHHCCCC
Confidence 999999999999887 899999999999999999752 1 22 25689999999999999999999999
Q ss_pred eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhh--HhhhhhHHHHhhccceE
Q 011136 406 RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEW--VTAAFNLFFYLTCNSYV 483 (493)
Q Consensus 406 ~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~--~~~~~~~~~~~~~~~~~ 483 (493)
+|+|+||+.+|+++|++.+...+. ..+. ..+++|+||+||+||.++. -..++. ...+-++.+
T Consensus 148 ~i~i~nR~~~~a~~la~~~~~~~~-----------~~~~---~~~~dlvINaTp~Gm~~~~~~~~~pi~--~~~l~~~~~ 211 (272)
T PRK12550 148 DGTIVARNEKTGKALAELYGYEWR-----------PDLG---GIEADILVNVTPIGMAGGPEADKLAFP--EAEIDAASV 211 (272)
T ss_pred EEEEEeCCHHHHHHHHHHhCCcch-----------hhcc---cccCCEEEECCccccCCCCccccCCCC--HHHcCCCCE
Confidence 899999999999999987642210 0111 1347899999999998632 111222 223345678
Q ss_pred eeec
Q 011136 484 VMEK 487 (493)
Q Consensus 484 ~~~~ 487 (493)
|+|-
T Consensus 212 v~D~ 215 (272)
T PRK12550 212 VFDV 215 (272)
T ss_pred EEEe
Confidence 8873
No 15
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=100.00 E-value=9.3e-47 Score=379.11 Aligned_cols=196 Identities=27% Similarity=0.338 Sum_probs=165.2
Q ss_pred CceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc---ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHH
Q 011136 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV---DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV 328 (493)
Q Consensus 252 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~---~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~ 328 (493)
.++.|+|||+||+||+||.|||++|+++|+|+.|.++++ +++.++++.++ .+|.|+|||||||+++++++|++|+.
T Consensus 4 ~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~ 82 (282)
T TIGR01809 4 GPKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDR 82 (282)
T ss_pred CCeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHH
Confidence 367999999999999999999999999999999999987 36888888774 49999999999999999999999999
Q ss_pred HHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eE
Q 011136 329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RV 407 (493)
Q Consensus 329 A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i 407 (493)
|+.+||||||+++. +|+|+||||||.||+.+|++... ..++++++++||||||+||+++++|.++|+ +|
T Consensus 83 A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~~---------~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i 152 (282)
T TIGR01809 83 ASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANIGK---------FEPLAGFRGLVIGAGGTSRAAVYALASLGVTDI 152 (282)
T ss_pred HHHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhhCC---------ccccCCceEEEEcCcHHHHHHHHHHHHcCCCeE
Confidence 99999999999852 89999999999999999975310 013578999999999999999999999999 99
Q ss_pred EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccc--ccCCceEEEEeccccCCchh
Q 011136 408 VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLF--TWHLKFFIAANIIHLGNHLE 465 (493)
Q Consensus 408 ~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~--~~~~~~~i~~n~tplG~~~~ 465 (493)
+|+||+.+|+++|++.++... .+..+...++ .-..+++|++|+||+||+.+
T Consensus 153 ~I~nRt~~ka~~La~~~~~~~-------~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~ 205 (282)
T TIGR01809 153 TVINRNPDKLSRLVDLGVQVG-------VITRLEGDSGGLAIEKAAEVLVSTVPADVPAD 205 (282)
T ss_pred EEEeCCHHHHHHHHHHhhhcC-------cceeccchhhhhhcccCCCEEEECCCCCCCCC
Confidence 999999999999999875322 1111221110 11156799999999999754
No 16
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-46 Score=376.98 Aligned_cols=215 Identities=32% Similarity=0.482 Sum_probs=179.1
Q ss_pred CCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcH
Q 011136 250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT 327 (493)
Q Consensus 250 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~ 327 (493)
+.+++.|+|+|+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++++|++|+
T Consensus 2 ~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~ 81 (278)
T PRK00258 2 TGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSE 81 (278)
T ss_pred CCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCH
Confidence 46688999999999999999999999999999999999999 5899999999888999999999999999999999999
Q ss_pred HHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-e
Q 011136 328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R 406 (493)
Q Consensus 328 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~ 406 (493)
.|+.+||||||+++ +|+|+||||||.||+++|++.+. .++.+++++|+|+||+|++++++|...|+ +
T Consensus 82 ~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~~----------~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~ 149 (278)
T PRK00258 82 RARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERLG----------VDLKGKRILILGAGGAARAVILPLLDLGVAE 149 (278)
T ss_pred HHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhccC----------CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCE
Confidence 99999999999976 89999999999999999975321 35678999999999999999999999996 9
Q ss_pred EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136 407 VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME 486 (493)
Q Consensus 407 i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
|+|+||+.++++++++.+.... .+.+-.++.+.+ .+++|++|+||.||+++.-.+++.. ..+-+..+|+|
T Consensus 150 V~v~~R~~~~a~~l~~~~~~~~-------~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~~~~~--~~l~~~~~v~D 219 (278)
T PRK00258 150 ITIVNRTVERAEELAKLFGALG-------KAELDLELQEEL-ADFDLIINATSAGMSGELPLPPLPL--SLLRPGTIVYD 219 (278)
T ss_pred EEEEeCCHHHHHHHHHHhhhcc-------ceeecccchhcc-ccCCEEEECCcCCCCCCCCCCCCCH--HHcCCCCEEEE
Confidence 9999999999999998876321 011100111222 5689999999999987532222222 12234667776
No 17
>PRK13576 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=6.5e-46 Score=356.95 Aligned_cols=204 Identities=23% Similarity=0.292 Sum_probs=174.0
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 011136 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV 101 (493)
Q Consensus 22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 101 (493)
++|+||+|+++++.++++.+.+. .++|+||||+|+|++.... +..+++....|+|||+|+++|||.+.+++++|+
T Consensus 1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~~~~r~ 75 (216)
T PRK13576 1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELDDELKI 75 (216)
T ss_pred CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCCHHHHH
Confidence 57999999999999999988654 4899999999999875433 233334455799999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH-h
Q 011136 102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI-T 180 (493)
Q Consensus 102 ~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~-~ 180 (493)
++|+.+++.+. ++|||+....+.. ..+.++|+|||||++||+.+++.+++++|++ ||||+|+|+||++. .
T Consensus 76 ~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~~~ 146 (216)
T PRK13576 76 SLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKGYK 146 (216)
T ss_pred HHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCchH
Confidence 99999999985 7799997543321 1246799999999999999999999999987 99999999999985 7
Q ss_pred HHH-HHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhcc
Q 011136 181 DVA-RVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR 247 (493)
Q Consensus 181 D~~-~l~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~ 247 (493)
|++ ++++ . ..+|+|+||+.| +||+++++|||++||++++++ |||||+++++|++++++.
T Consensus 147 d~l~~Ll~---~--~~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~--sAPGQi~v~~l~~i~~~l 206 (216)
T PRK13576 147 EVLLPLLE---Y--ENVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEP--TAQGQLHYKKVKQILNYL 206 (216)
T ss_pred hHHHHHhc---c--cCccEEEcCCcc-HHHHHHHHhCCeeEEEecCCC--CCCCCccHHHHHHHHHHH
Confidence 775 5554 2 245889999999 999999999999999999974 999999999999999854
No 18
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=100.00 E-value=1.7e-44 Score=360.65 Aligned_cols=211 Identities=31% Similarity=0.426 Sum_probs=175.8
Q ss_pred eEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHH
Q 011136 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS 331 (493)
Q Consensus 254 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~ 331 (493)
++|+|+|+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++.++|.|+|||||||+++++++|++++.|+.
T Consensus 1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~ 80 (270)
T TIGR00507 1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL 80 (270)
T ss_pred CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence 4799999999999999999999999999999999998 47999999999899999999999999999999999999999
Q ss_pred hcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEe
Q 011136 332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN 411 (493)
Q Consensus 332 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~ 411 (493)
+||||||+++ +|+|+||||||.||+++|++. . ...++++++|+|+||+|++++++|.+.|++|+|+|
T Consensus 81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~-~----------~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~ 147 (270)
T TIGR00507 81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERL-I----------PLRPNQRVLIIGAGGAARAVALPLLKADCNVIIAN 147 (270)
T ss_pred hCCceEEEee--CCEEEEEcCCHHHHHHHHHhc-C----------CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Confidence 9999999977 899999999999999999752 1 23457899999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136 412 RTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK 487 (493)
Q Consensus 412 R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
|+.++++++++.++... .+... ++++....+.+|++|+||.||.++.-...+. ....-++.+|+|-
T Consensus 148 R~~~~~~~la~~~~~~~-------~~~~~-~~~~~~~~~~DivInatp~gm~~~~~~~~~~--~~~l~~~~~v~D~ 213 (270)
T TIGR00507 148 RTVSKAEELAERFQRYG-------EIQAF-SMDELPLHRVDLIINATSAGMSGNIDEPPVP--AEKLKEGMVVYDM 213 (270)
T ss_pred CCHHHHHHHHHHHhhcC-------ceEEe-chhhhcccCccEEEECCCCCCCCCCCCCCCC--HHHcCCCCEEEEe
Confidence 99999999998875321 11111 1222212468999999999998754222221 2223467788874
No 19
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=2e-43 Score=342.75 Aligned_cols=214 Identities=20% Similarity=0.292 Sum_probs=179.3
Q ss_pred cccccc--ccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch--hHHHHHHhhCCCcEEEEe
Q 011136 9 ASGSKL--VSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR--ENIKTLIKESPVPTLFTY 84 (493)
Q Consensus 9 ~~~~~~--~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~--~~l~~l~~~~~~PiI~T~ 84 (493)
-||-|+ .+-.+...+|+||+||++++.+|++.+++.+...++|+||||+|+|.+++.. ..+...++..+.|+|||+
T Consensus 4 ~~~~~~~v~~~~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~~~p~I~T~ 83 (229)
T PRK01261 4 YSGDKISIGKFVIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEMDIDYIFTY 83 (229)
T ss_pred ccCCeEEEeCeEeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhcCCCEEEEE
Confidence 356554 6889999999999999999999999999988778999999999999875432 222233344589999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 011136 85 RPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA 164 (493)
Q Consensus 85 R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~ 164 (493)
|+. ++ .++++.+++.++||||||++...+ + ..+..++|+|+||| ||+.+++.+++++|.+
T Consensus 84 R~~--------~~---~~~l~~a~~~~~d~vDIEl~~~~~----~-~~~~~~~kvIvS~H----tp~~eeL~~~l~~m~~ 143 (229)
T PRK01261 84 RGV--------DA---RKYYETAIDKMPPAVDLDINLIGK----L-EFRPRNTMLMVSYH----TNNSDNMPAILDIMNE 143 (229)
T ss_pred cCC--------CH---HHHHHHHHhhCCCEEEEEcccchh----h-hhhcCCCeEEEEeC----CCCHHHHHHHHHHHHH
Confidence 952 21 478888888779999999987333 2 22467999999999 7788999999999999
Q ss_pred cCCCEEEEEeecCCHhHHHHHHH----HhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhH
Q 011136 165 SGADIVKFATTALDITDVARVFQ----ITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240 (493)
Q Consensus 165 ~gaDIvKia~~a~s~~D~~~l~~----~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l 240 (493)
+||||+|+|+||++.+|+++++. +....+.|+|+|+||+ ++||+++++|||++||++++++ |||||+++++|
T Consensus 144 ~gaDI~KiAvmp~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~--sAPGQi~v~~l 219 (229)
T PRK01261 144 KNPDYVKVACNYNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNE--TAPGQPKRDYY 219 (229)
T ss_pred hCCCEEEEEeCCCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCC--CCCCCCCHHHH
Confidence 99999999999999999887764 3334578999999999 9999999999999999999974 99999999999
Q ss_pred HHHhhc
Q 011136 241 LDLYNF 246 (493)
Q Consensus 241 ~~~~~~ 246 (493)
+++++.
T Consensus 220 ~~~~~~ 225 (229)
T PRK01261 220 ESAFIK 225 (229)
T ss_pred HHHHHH
Confidence 999874
No 20
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=99.95 E-value=1.4e-31 Score=274.41 Aligned_cols=367 Identities=16% Similarity=0.072 Sum_probs=302.9
Q ss_pred CCCcEEEEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCH
Q 011136 76 SPVPTLFTYRPIWEGGQ---YDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSV 152 (493)
Q Consensus 76 ~~~PiI~T~R~~~eGG~---~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~ 152 (493)
..+|.+++.|.++|+|. ..+...++...+...++++.+|+|.|++...++...+-+...+..+||.+.|..+.+|
T Consensus 148 sal~~L~~~~~~we~~~~~vveG~gg~~~~~~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rP-- 225 (595)
T KOG0692|consen 148 SALKTLGLNVETWEENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERP-- 225 (595)
T ss_pred hhHHHhccccceecCCCEEEEEcCCCeeeechhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCC--
Confidence 57899999999999887 5666666555667778899999999999888777766655555669999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCC
Q 011136 153 EDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAP 232 (493)
Q Consensus 153 ~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~l~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAP 232 (493)
+-.+..++++.||||.|++.+...+-|+. ....++..++|+++.-||+.+..+|++.|.++..+||..++..+-|+|
T Consensus 226 --i~~LV~~l~q~GadI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~p 302 (595)
T KOG0692|consen 226 --IGDLVVGLKQLGADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVP 302 (595)
T ss_pred --chHHHHHHHhcCCceEEeccCCCCceeee-ccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCcccccc
Confidence 55677888889999999999999999997 555677778999999999999999999999999999999997778999
Q ss_pred CCCCHHhHHHHh--hccccCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCeEE-
Q 011136 233 GQPTIKDLLDLY--NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS- 309 (493)
Q Consensus 233 GQ~~i~~l~~~~--~~~~~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~- 309 (493)
+|.....|.+.| ++.+..++++.|++.|.|++|+.+|.+||.+|.+...++.|...-++..-.++..-...++.||+
T Consensus 303 yv~mt~~lme~fgvn~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~ 382 (595)
T KOG0692|consen 303 YVEMTLKLMERFGVNVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAE 382 (595)
T ss_pred chhHHHHHHHHhCcCeEecCCCcceEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHh
Confidence 999999999999 78888999999999999999999999999999999999888776554333334333456899999
Q ss_pred EccCchHHHhhhhhhhcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCccccc----CCCEEE
Q 011136 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSAL----AGKLFV 385 (493)
Q Consensus 310 VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l----~~~~vl 385 (493)
|+.|||.++...+++++..+.-+||+|++.++..|+...++|+|..|-+.|+...++.+++- ....+. -.+...
T Consensus 383 vl~pmgc~v~qt~~svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svvA~~~~~~s~gdp--tti~~~as~rvket~r 460 (595)
T KOG0692|consen 383 VLEPMGCKVSQTENSVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLRSSGDP--TTIRDVASWRVKETER 460 (595)
T ss_pred hhccccceeeeecccccccCCCCCcccceehhhhcccccccchhHhHhHHHHhhcccCCCCC--cccccccchhHHHHHH
Confidence 99999999999999999999999999999876457889999999999999998766543210 111111 123567
Q ss_pred EEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCc
Q 011136 386 VIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNH 463 (493)
Q Consensus 386 vlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~ 463 (493)
|||.|+..+...+...+.+..++|.+|+ +|+-++++.... +...+...+-.+++++|+++.|..
T Consensus 461 ~ia~~~el~klg~~~~E~~dg~~v~~~~-~k~lk~ae~~g~-------------~TydDhr~am~fsvLA~~~~~~~~ 524 (595)
T KOG0692|consen 461 MIAICTELRKLGATVEEGSDGYCVITPP-EKKLKLAEIDGS-------------LTYDDHRMAMAFSVLAACADVPIT 524 (595)
T ss_pred HHHHHHHHHHhcccccccCceEEEeCCc-hHhccchhhccc-------------cccccccchhhhhHHHhccCCCcc
Confidence 8999999999998888887789999999 888888886421 233444556778889999998843
No 21
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=99.94 E-value=3e-27 Score=195.10 Aligned_cols=81 Identities=41% Similarity=0.806 Sum_probs=75.0
Q ss_pred eecCCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcce
Q 011136 258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAV 335 (493)
Q Consensus 258 viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAv 335 (493)
|+|+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++..+|.|+|||||||+++++++|++++.|+.+|||
T Consensus 1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv 80 (83)
T PF08501_consen 1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV 80 (83)
T ss_dssp EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence 6999999999999999999999999999999995 99999999998999999999999999999999999999999999
Q ss_pred eeE
Q 011136 336 NCI 338 (493)
Q Consensus 336 Nti 338 (493)
|||
T Consensus 81 Ntv 83 (83)
T PF08501_consen 81 NTV 83 (83)
T ss_dssp SEE
T ss_pred ccC
Confidence 997
No 22
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.83 E-value=4.1e-20 Score=185.51 Aligned_cols=179 Identities=21% Similarity=0.317 Sum_probs=143.0
Q ss_pred EEeecCCccccccHHHHHHHHHHcCCCceeecc--cc--ccHHHHHHHhcC-CCCCeEEEccCchHHHhh--hhhhhcHH
Q 011136 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHL--LV--DDIAKFFQTYSS-NDFAGFSCTIPHKEAAVK--CCDEVDTV 328 (493)
Q Consensus 256 ~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~--~~--~~l~~~~~~l~~-~~~~G~~VT~P~K~~v~~--~~d~~~~~ 328 (493)
.-++|+.=+.-.-=.+|+.+|+++|++..|..+ ++ +++.+.++.+.. +++.|++||+|||+.+.+ ++|++ +.
T Consensus 38 ~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~ 116 (283)
T PRK14192 38 TILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SL 116 (283)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CH
Confidence 445664333233347999999999999999999 55 478888888855 489999999999999999 99999 88
Q ss_pred HHHhcceeeEEEeccCCe------EEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136 329 AKSIGAVNCIIRRQSDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK 401 (493)
Q Consensus 329 A~~igAvNti~~~~~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~ 401 (493)
++.++++|++ + .|+ ++|+||| .||+..|++. +.+++||+|+|+|+|| +||++++.|.
T Consensus 117 aKDVdg~n~~-n---~G~l~~~~~~~~p~T~-~gii~~L~~~-----------~i~l~Gk~vvViG~gg~vGkpia~~L~ 180 (283)
T PRK14192 117 AKDVDGVTCL-G---FGRMAMGEAAYGSATP-AGIMRLLKAY-----------NIELAGKHAVVVGRSAILGKPMAMMLL 180 (283)
T ss_pred HHhcCCCCcc-c---cCccccCCCcccCCcH-HHHHHHHHHc-----------CCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence 9999999999 3 466 8999999 9999999863 1578899999999999 9999999999
Q ss_pred hCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccc
Q 011136 402 AKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNS 481 (493)
Q Consensus 402 ~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~ 481 (493)
+.|+.|+|++| +++.|++.+ .+++|++|||+ .|+.+...+ .-.+
T Consensus 181 ~~gatVtv~~~---~t~~L~~~~------------------------~~aDIvI~AtG---~~~~v~~~~------lk~g 224 (283)
T PRK14192 181 NANATVTICHS---RTQNLPELV------------------------KQADIIVGAVG---KPELIKKDW------IKQG 224 (283)
T ss_pred hCCCEEEEEeC---CchhHHHHh------------------------ccCCEEEEccC---CCCcCCHHH------cCCC
Confidence 99999999998 455555543 24579999994 444454332 2467
Q ss_pred eEeeec
Q 011136 482 YVVMEK 487 (493)
Q Consensus 482 ~~~~~~ 487 (493)
.+|.|-
T Consensus 225 avViDv 230 (283)
T PRK14192 225 AVVVDA 230 (283)
T ss_pred CEEEEE
Confidence 777774
No 23
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=99.43 E-value=4.1e-13 Score=120.78 Aligned_cols=80 Identities=30% Similarity=0.296 Sum_probs=64.1
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA 455 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~ 455 (493)
.++++++++||||||+||+++++|...|+ +|+|+|||.+|+++|++.++.... .+.-+.++.+.+ .+++|++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~------~~~~~~~~~~~~-~~~DivI 80 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNI------EAIPLEDLEEAL-QEADIVI 80 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSE------EEEEGGGHCHHH-HTESEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcccc------ceeeHHHHHHHH-hhCCeEE
Confidence 36789999999999999999999999999 799999999999999999843321 122223333333 6799999
Q ss_pred eccccCCc
Q 011136 456 NIIHLGNH 463 (493)
Q Consensus 456 n~tplG~~ 463 (493)
|+||.|++
T Consensus 81 ~aT~~~~~ 88 (135)
T PF01488_consen 81 NATPSGMP 88 (135)
T ss_dssp E-SSTTST
T ss_pred EecCCCCc
Confidence 99999999
No 24
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.98 E-value=1.1e-09 Score=112.83 Aligned_cols=111 Identities=19% Similarity=0.113 Sum_probs=85.7
Q ss_pred HHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHh-CCC-eE
Q 011136 330 KSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGA-RV 407 (493)
Q Consensus 330 ~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~-~g~-~i 407 (493)
...|++|+++.. +++|.|+|||+.|++.+.. +. ....++++|+|+|++|++.+.++.. .++ +|
T Consensus 96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-----------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V 160 (330)
T PRK08291 96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-----------REDASRAAVIGAGEQARLQLEALTLVRPIREV 160 (330)
T ss_pred CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-----------CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEE
Confidence 457999999765 7899999999999999874 32 1135789999999999999999986 566 99
Q ss_pred EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccC
Q 011136 408 VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLG 461 (493)
Q Consensus 408 ~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG 461 (493)
+|+||+.++++++++.+.... . -.+.+..++++.. .+.+|++++||..
T Consensus 161 ~v~~R~~~~a~~l~~~~~~~~-g----~~v~~~~d~~~al-~~aDiVi~aT~s~ 208 (330)
T PRK08291 161 RVWARDAAKAEAYAADLRAEL-G----IPVTVARDVHEAV-AGADIIVTTTPSE 208 (330)
T ss_pred EEEcCCHHHHHHHHHHHhhcc-C----ceEEEeCCHHHHH-ccCCEEEEeeCCC
Confidence 999999999999999875321 0 1344444444433 4678999999976
No 25
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.91 E-value=3e-09 Score=109.53 Aligned_cols=110 Identities=16% Similarity=0.101 Sum_probs=85.3
Q ss_pred HhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHH-hCCC-eEE
Q 011136 331 SIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAK-AKGA-RVV 408 (493)
Q Consensus 331 ~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~-~~g~-~i~ 408 (493)
..|++|+++.. ++.+.|+|||+.|++.+.. +.. ...++++|||+|++|++.+.+|. ..+. +|+
T Consensus 94 ~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la~-----------~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~ 158 (326)
T TIGR02992 94 RTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LAR-----------EDSSVVAIFGAGMQARLQLEALTLVRDIRSAR 158 (326)
T ss_pred CCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hCC-----------CCCcEEEEECCCHHHHHHHHHHHHhCCccEEE
Confidence 56999999765 7889999999999999864 321 13578999999999999999997 4677 899
Q ss_pred EEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccC
Q 011136 409 IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLG 461 (493)
Q Consensus 409 v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG 461 (493)
|+||+.++++++++.+.... . -++.+..++++.. .+.+|++++||-.
T Consensus 159 V~~R~~~~a~~~a~~~~~~~-g----~~v~~~~~~~~av-~~aDiVvtaT~s~ 205 (326)
T TIGR02992 159 IWARDSAKAEALALQLSSLL-G----IDVTAATDPRAAM-SGADIIVTTTPSE 205 (326)
T ss_pred EECCCHHHHHHHHHHHHhhc-C----ceEEEeCCHHHHh-ccCCEEEEecCCC
Confidence 99999999999999875321 0 1344445544443 5689999999875
No 26
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.88 E-value=1.5e-08 Score=92.34 Aligned_cols=114 Identities=27% Similarity=0.299 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhc
Q 011136 352 TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLN 430 (493)
Q Consensus 352 TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~ 430 (493)
||++||..++++. . .++++++++|+|+|++|++++.+|.+.|. +|++++|+.++++++++.+......
T Consensus 1 td~~g~~~a~~~~-~----------~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~ 69 (155)
T cd01065 1 TDGLGFVRALEEA-G----------IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIA 69 (155)
T ss_pred CCHHHHHHHHHhh-C----------CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccc
Confidence 8999999999863 1 34678999999999999999999999974 9999999999999998877642100
Q ss_pred ccccceEEEEeecccccCCceEEEEeccccCCc-hhhHhhhhhHHHHhhccceEeeecc
Q 011136 431 TLLFDSVIVIRILLFTWHLKFFIAANIIHLGNH-LEWVTAAFNLFFYLTCNSYVVMEKT 488 (493)
Q Consensus 431 ~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
....+..+. -.+.++++++||-+.+ .+... +.. ...-++.+|||-.
T Consensus 70 -------~~~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~--~~~--~~~~~~~~v~D~~ 116 (155)
T cd01065 70 -------IAYLDLEEL-LAEADLIINTTPVGMKPGDELP--LPP--SLLKPGGVVYDVV 116 (155)
T ss_pred -------eeecchhhc-cccCCEEEeCcCCCCCCCCCCC--CCH--HHcCCCCEEEEcC
Confidence 001122211 2568999999999997 22221 111 1125778888854
No 27
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.69 E-value=2.1e-08 Score=106.34 Aligned_cols=129 Identities=19% Similarity=0.154 Sum_probs=90.1
Q ss_pred chHHHhhhhhhhcHHHHHhcceeeEEEe---c--cCCeE------EEEeccHHHHHH--HHHhhhcccCCCCCCcccccC
Q 011136 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRR---Q--SDGKL------FGYNTDYVGAIS--AIEDGLRGRLNVSGGVSSALA 380 (493)
Q Consensus 314 ~K~~v~~~~d~~~~~A~~igAvNti~~~---~--~~g~l------~G~NTD~~G~~~--~l~~~l~~~~~~~~~~~~~l~ 380 (493)
--.+|++++.+.-..|+..|+++.++.+ . ..||- +|.+.=.++.++ ..++.+ .++.
T Consensus 112 GE~QIlgQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la~~~~-----------~~l~ 180 (414)
T PRK13940 112 GEPQILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAKRQL-----------DNIS 180 (414)
T ss_pred CcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHh-----------cCcc
Confidence 3578999999999999999998887643 0 11221 233333344322 112211 3577
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH 459 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp 459 (493)
+++++|+|+||||++++.+|...|+ +|+|+|||.++++.|++.++.. .+.-+.++.+.+ .+++|++|||+
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~--------~~~~~~~l~~~l-~~aDiVI~aT~ 251 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA--------SAHYLSELPQLI-KKADIIIAAVN 251 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC--------eEecHHHHHHHh-ccCCEEEECcC
Confidence 9999999999999999999999998 9999999999999999987521 111122333334 56899999998
Q ss_pred cCC
Q 011136 460 LGN 462 (493)
Q Consensus 460 lG~ 462 (493)
-.-
T Consensus 252 a~~ 254 (414)
T PRK13940 252 VLE 254 (414)
T ss_pred CCC
Confidence 643
No 28
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.63 E-value=1.1e-07 Score=93.02 Aligned_cols=104 Identities=17% Similarity=0.105 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC---eEEEEeCC----hHHHH-------H
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRT----YGESL-------T 419 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~---~i~v~~R~----~~~a~-------~ 419 (493)
..||..+++.. +.++++++++|+||||+|+++++.|...|+ +|+|+||+ .++++ +
T Consensus 9 lAG~~~al~~~-----------g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~ 77 (226)
T cd05311 9 LAGLLNALKLV-----------GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNE 77 (226)
T ss_pred HHHHHHHHHHh-----------CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHH
Confidence 35777787642 146789999999999999999999999996 59999999 66653 3
Q ss_pred HHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136 420 FLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME 486 (493)
Q Consensus 420 la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
+++.++... .+ .++.+.. .+.++++|+||.|+..... ...+.+..+|+|
T Consensus 78 la~~~~~~~-----~~-----~~l~~~l-~~~dvlIgaT~~G~~~~~~-------l~~m~~~~ivf~ 126 (226)
T cd05311 78 IAKETNPEK-----TG-----GTLKEAL-KGADVFIGVSRPGVVKKEM-------IKKMAKDPIVFA 126 (226)
T ss_pred HHHHhccCc-----cc-----CCHHHHH-hcCCEEEeCCCCCCCCHHH-------HHhhCCCCEEEE
Confidence 444332110 00 1222222 3468999999999965322 223345666665
No 29
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.56 E-value=2.2e-07 Score=97.58 Aligned_cols=166 Identities=18% Similarity=0.224 Sum_probs=106.9
Q ss_pred HHHHHHHHHcCCC------ceeeccccccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEe--
Q 011136 270 ILYNEAFKSVGFN------GVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRR-- 341 (493)
Q Consensus 270 ~ihn~~f~~~gl~------~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~-- 341 (493)
.+-+-.++..+++ +.|...+-+-++.+++-. .|+.-+.+. -.+|++++...-..|+.-|.+.+++.+
T Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~v~~~~~Av~HLfrVA--sGLDSmVlG---E~QILGQVK~Ay~~a~~~g~~g~~L~~lF 138 (414)
T COG0373 64 ELIRFLAELHGLSIEDLGKYLYVLRGEEAVRHLFRVA--SGLDSLVLG---ETQILGQVKDAYAKAQENGTLGKVLNRLF 138 (414)
T ss_pred chhHHHHHhcCCChhhhccCeEEEcCHHHHHHHHHHh--ccchhhhcC---cHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4444445555543 244444444566665543 233333332 468999999999999999998887643
Q ss_pred -c--cCCe------EEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEe
Q 011136 342 -Q--SDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN 411 (493)
Q Consensus 342 -~--~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~ 411 (493)
. +-|+ -+|.|-=.++..+ ++-. .+ . ..+++++++||||||.|+..++.+|...|+ +|+|+|
T Consensus 139 qkAi~~gKrvRseT~I~~~~VSi~saA-v~lA-~~-~------~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN 209 (414)
T COG0373 139 QKAISVGKRVRSETGIGKGAVSISSAA-VELA-KR-I------FGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN 209 (414)
T ss_pred HHHHHHHHHhhcccCCCCCccchHHHH-HHHH-HH-H------hcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc
Confidence 1 1232 2455555555533 2211 11 0 134889999999999999999999999998 999999
Q ss_pred CChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136 412 RTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH 459 (493)
Q Consensus 412 R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp 459 (493)
||.+||++||++++... .-++++.... .+++|++=+|+
T Consensus 210 RT~erA~~La~~~~~~~---------~~l~el~~~l-~~~DvVissTs 247 (414)
T COG0373 210 RTLERAEELAKKLGAEA---------VALEELLEAL-AEADVVISSTS 247 (414)
T ss_pred CCHHHHHHHHHHhCCee---------ecHHHHHHhh-hhCCEEEEecC
Confidence 99999999999999322 1123333344 45566665553
No 30
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.52 E-value=4e-08 Score=104.71 Aligned_cols=155 Identities=19% Similarity=0.159 Sum_probs=103.0
Q ss_pred chHHHhhhhhhhcHHHHHhcceeeEEEe---c--cCCeEEEEeccHHHH-----HHHHHhhhcccCCCCCCcccccCCCE
Q 011136 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRR---Q--SDGKLFGYNTDYVGA-----ISAIEDGLRGRLNVSGGVSSALAGKL 383 (493)
Q Consensus 314 ~K~~v~~~~d~~~~~A~~igAvNti~~~---~--~~g~l~G~NTD~~G~-----~~~l~~~l~~~~~~~~~~~~~l~~~~ 383 (493)
=+.+|+++++...+.|+..|++|+++.. . ..++.++.+|+..+. ..+++..... ..++.+++
T Consensus 113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~~--------~~~~~~~~ 184 (423)
T PRK00045 113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQI--------FGDLSGKK 184 (423)
T ss_pred CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHHHHh--------hCCccCCE
Confidence 5788999999999999999999998732 0 145677778884332 1233321110 02467899
Q ss_pred EEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCC
Q 011136 384 FVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGN 462 (493)
Q Consensus 384 vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~ 462 (493)
++|+|+|++|++++..|...|+ +|+++||+.++++.+++.++... ..+.++.+.. .++++++++||-.-
T Consensus 185 vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~---------~~~~~~~~~l-~~aDvVI~aT~s~~ 254 (423)
T PRK00045 185 VLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEA---------IPLDELPEAL-AEADIVISSTGAPH 254 (423)
T ss_pred EEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcE---------eeHHHHHHHh-ccCCEEEECCCCCC
Confidence 9999999999999999999998 99999999999999998876311 1112222222 45789999997443
Q ss_pred chhhHhhhhhHHHHhh--ccceEeeecc
Q 011136 463 HLEWVTAAFNLFFYLT--CNSYVVMEKT 488 (493)
Q Consensus 463 ~~~~~~~~~~~~~~~~--~~~~~~~~~~ 488 (493)
+ .+...+....... -+..+++|-.
T Consensus 255 ~--~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 255 P--IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred c--EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 3 1233333222111 1356777743
No 31
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.41 E-value=1.6e-06 Score=82.51 Aligned_cols=103 Identities=22% Similarity=0.143 Sum_probs=72.3
Q ss_pred EEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136 349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL 427 (493)
Q Consensus 349 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~ 427 (493)
|-||-....+.++++.+.+. +.++++++++|+|+ |++|++++..|.+.|++|++++|+.++++++++.+...
T Consensus 3 G~~~ta~aav~~~~~~l~~~-------~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~ 75 (194)
T cd01078 3 GSNTTAAAAVAAAGKALELM-------GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRAR 75 (194)
T ss_pred CcHHHHHHHHHHHHHHHHHh-------CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhh
Confidence 44555555566666655421 24678999999996 99999999999999999999999999999998876522
Q ss_pred hhcccccceEEEEe--ecc--cccCCceEEEEeccccCCc
Q 011136 428 LLNTLLFDSVIVIR--ILL--FTWHLKFFIAANIIHLGNH 463 (493)
Q Consensus 428 ~~~~~~~~~~~v~~--~l~--~~~~~~~~i~~n~tplG~~ 463 (493)
.- ..+.... +.+ ..+-.+.++++++||.|+.
T Consensus 76 ~~-----~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~ 110 (194)
T cd01078 76 FG-----EGVGAVETSDDAARAAAIKGADVVFAAGAAGVE 110 (194)
T ss_pred cC-----CcEEEeeCCCHHHHHHHHhcCCEEEECCCCCce
Confidence 10 0111111 111 1233567899999999997
No 32
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.20 E-value=1.1e-05 Score=81.64 Aligned_cols=93 Identities=20% Similarity=0.164 Sum_probs=64.2
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.|++++|+|+|++|++++..|...|++|++++|+.++.+.+.+ .+... +. +.++.+.. .+.++++|
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~-~g~~~--------~~-~~~l~~~l-~~aDiVin 215 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITE-MGLIP--------FP-LNKLEEKV-AEIDIVIN 215 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-CCCee--------ec-HHHHHHHh-ccCCEEEE
Confidence 4678999999999999999999999999999999999877655432 11110 00 12232333 56899999
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK 487 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
++|.++-.... +..+-++.+++|-
T Consensus 216 t~P~~ii~~~~-------l~~~k~~aliIDl 239 (287)
T TIGR02853 216 TIPALVLTADV-------LSKLPKHAVIIDL 239 (287)
T ss_pred CCChHHhCHHH-------HhcCCCCeEEEEe
Confidence 99998643222 2333456777763
No 33
>PLN00203 glutamyl-tRNA reductase
Probab=98.11 E-value=2.9e-06 Score=92.34 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=89.6
Q ss_pred hHHHhhhhhhhcHHHHHhcceeeEEEe---c--cCCeE------EEEeccHHHHHH--HHHhhhcccCCCCCCcccccCC
Q 011136 315 KEAAVKCCDEVDTVAKSIGAVNCIIRR---Q--SDGKL------FGYNTDYVGAIS--AIEDGLRGRLNVSGGVSSALAG 381 (493)
Q Consensus 315 K~~v~~~~d~~~~~A~~igAvNti~~~---~--~~g~l------~G~NTD~~G~~~--~l~~~l~~~~~~~~~~~~~l~~ 381 (493)
-.+|++++.+.-..|+..|+++.++.+ . ..||- +|.+.=.++.++ ..++.+. ..++.+
T Consensus 196 E~QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~---------~~~l~~ 266 (519)
T PLN00203 196 EGQILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLP---------ESSHAS 266 (519)
T ss_pred ChHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcC---------CCCCCC
Confidence 467999999999999999998877643 0 12222 233333333322 1122121 013778
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL 460 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl 460 (493)
++++|||+|+||++++.+|...|+ +|+|+||+.++++.+++.++.... .+..+.++.+.+ .+.+|++.+||-
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i------~~~~~~dl~~al-~~aDVVIsAT~s 339 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEI------IYKPLDEMLACA-AEADVVFTSTSS 339 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCce------EeecHhhHHHHH-hcCCEEEEccCC
Confidence 999999999999999999999998 899999999999999987752211 111112333333 567899999987
Q ss_pred CCc
Q 011136 461 GNH 463 (493)
Q Consensus 461 G~~ 463 (493)
+.+
T Consensus 340 ~~p 342 (519)
T PLN00203 340 ETP 342 (519)
T ss_pred CCC
Confidence 665
No 34
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.97 E-value=2.1e-05 Score=80.56 Aligned_cols=154 Identities=20% Similarity=0.193 Sum_probs=97.5
Q ss_pred CchHHHhhhhhhhcHHHHHhcceeeEEEe---c--cCCe------EEEEeccHHHHHHHHHhhhcccCCCCCCcccccCC
Q 011136 313 PHKEAAVKCCDEVDTVAKSIGAVNCIIRR---Q--SDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAG 381 (493)
Q Consensus 313 P~K~~v~~~~d~~~~~A~~igAvNti~~~---~--~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~ 381 (493)
---.+|++++.+.-..|+..|.++.++.+ . +-++ -++.+.=..+.. +++..... ...+.+
T Consensus 108 ~GE~qIlgQvk~A~~~a~~~g~~~~~L~~lf~~a~~~~k~vr~et~i~~~~~sv~~~-Av~~a~~~--------~~~l~~ 178 (311)
T cd05213 108 VGETQILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSA-AVELAEKI--------FGNLKG 178 (311)
T ss_pred cCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHHHHHH--------hCCccC
Confidence 34678999999999999999998877643 0 0111 122222233332 23321110 023678
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL 460 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl 460 (493)
++++|+|+|.+|+.++..|...|+ +|+++||+.++++++++.++... ..+.++.+.. .+.++++.+||-
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~---------~~~~~~~~~l-~~aDvVi~at~~ 248 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNA---------VPLDELLELL-NEADVVISATGA 248 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeE---------EeHHHHHHHH-hcCCEEEECCCC
Confidence 999999999999999999998887 99999999999999999876411 1112222222 457899999997
Q ss_pred CCchhhHhhhhhHHHHhhccceEeeecc
Q 011136 461 GNHLEWVTAAFNLFFYLTCNSYVVMEKT 488 (493)
Q Consensus 461 G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
.-+.+.+.+.... ..-++++++|-.
T Consensus 249 ~~~~~~~~~~~~~---~~~~~~~viDla 273 (311)
T cd05213 249 PHYAKIVERAMKK---RSGKPRLIVDLA 273 (311)
T ss_pred CchHHHHHHHHhh---CCCCCeEEEEeC
Confidence 6652323221111 112567888753
No 35
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.77 E-value=0.0002 Score=68.70 Aligned_cols=110 Identities=16% Similarity=0.108 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccc
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLL 433 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~ 433 (493)
+.|...+++..+...- .+.+++|++++|+|.|.+|+.++..|.+.|++|++++++.++.+++++.++....
T Consensus 6 g~Gv~~~~~~~~~~~~-----~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v---- 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLL-----GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV---- 76 (200)
T ss_pred HHHHHHHHHHHHHHhc-----CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE----
Confidence 5666666665443210 0257889999999999999999999999999999999999998888876542211
Q ss_pred cceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136 434 FDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT 488 (493)
Q Consensus 434 ~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
. .++.|..+.+|++|+..-+ ..+.......+.++|.+..
T Consensus 77 -------~-~~~l~~~~~Dv~vp~A~~~--------~I~~~~~~~l~~~~v~~~A 115 (200)
T cd01075 77 -------A-PEEIYSVDADVFAPCALGG--------VINDDTIPQLKAKAIAGAA 115 (200)
T ss_pred -------c-chhhccccCCEEEeccccc--------ccCHHHHHHcCCCEEEECC
Confidence 1 1234444678888776633 2222233345667776653
No 36
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.76 E-value=5.9e-05 Score=76.78 Aligned_cols=93 Identities=20% Similarity=0.126 Sum_probs=61.9
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.+++++|+|+|++|++++..|+.+|++|++++|+.++.+. ++.++... .-+.++.+.. .++++++|
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~-~~~~G~~~---------~~~~~l~~~l-~~aDiVI~ 216 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLAR-ITEMGLSP---------FHLSELAEEV-GKIDIIFN 216 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHcCCee---------ecHHHHHHHh-CCCCEEEE
Confidence 4567899999999999999999999999999999999776433 33333211 0012232222 56899999
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK 487 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
++|.++-.+ ..+..+-++.+|.|-
T Consensus 217 t~p~~~i~~-------~~l~~~~~g~vIIDl 240 (296)
T PRK08306 217 TIPALVLTK-------EVLSKMPPEALIIDL 240 (296)
T ss_pred CCChhhhhH-------HHHHcCCCCcEEEEE
Confidence 998653221 123334467777763
No 37
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.69 E-value=8.9e-05 Score=76.09 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=56.1
Q ss_pred CCCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI 457 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~ 457 (493)
+.++++|||+|++|++.+.++.. .+. +|+|+||++++++++++.+..... .+.+..+.++.. .+.+|++++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~------~~~~~~~~~~av-~~aDIVi~a 196 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGF------DAEVVTDLEAAV-RQADIISCA 196 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCC------ceEEeCCHHHHH-hcCCEEEEe
Confidence 46899999999999999987766 566 999999999999999998753211 233334443333 456788888
Q ss_pred cccC
Q 011136 458 IHLG 461 (493)
Q Consensus 458 tplG 461 (493)
||-.
T Consensus 197 T~s~ 200 (314)
T PRK06141 197 TLST 200 (314)
T ss_pred eCCC
Confidence 8865
No 38
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.67 E-value=0.00041 Score=57.26 Aligned_cols=52 Identities=33% Similarity=0.533 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR 412 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R 412 (493)
+.|.+..|+..... .+..+++++++|+|+|++|+.++.+|.+.|. +|++++|
T Consensus 3 ~~~~~~~l~~~~~~-------~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 3 AAGAVALLKAAGKV-------TNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred hHHHHHHHHHHHHH-------hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 56777777765431 1245789999999999999999999999965 9999999
No 39
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.65 E-value=0.00031 Score=58.63 Aligned_cols=89 Identities=19% Similarity=0.137 Sum_probs=62.2
Q ss_pred EEEEEecchHHHHHHHHHHhCC---CeEEEE-eCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136 383 LFVVIGAGGAGKALAYGAKAKG---ARVVIA-NRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII 458 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g---~~i~v~-~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t 458 (493)
++.|||+|.+|.+++..|.+.| .+|+++ +|++++++++++++...-.. -...+.-+..|..|++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~~~~advvila--- 68 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATA---------DDNEEAAQEADVVILA--- 68 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEES---------EEHHHHHHHTSEEEE----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcccccc---------CChHHhhccCCEEEEE---
Confidence 5788999999999999999999 589955 99999999999987722110 0111111125566666
Q ss_pred ccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136 459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEK 487 (493)
Q Consensus 459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
++|..+..-.... ....++++|+|-
T Consensus 69 ---v~p~~~~~v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 69 ---VKPQQLPEVLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp ---S-GGGHHHHHHHH-HHHHTTSEEEEE
T ss_pred ---ECHHHHHHHHHHH-hhccCCCEEEEe
Confidence 8888887655555 556788888874
No 40
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.63 E-value=0.00014 Score=75.04 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=59.0
Q ss_pred CCCEEEEEecchHHHHHHHHHH-hCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136 380 AGKLFVVIGAGGAGKALAYGAK-AKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI 457 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~-~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~ 457 (493)
..++++|+|+|++|++.+.++. ..++ +|.|+||+.++++++++.+....- ..+.+..+.++.. .+.+|++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~aDiVi~a 199 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFN-----TEIYVVNSADEAI-EEADIIVTV 199 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CcEEEeCCHHHHH-hcCCEEEEc
Confidence 3678999999999999998875 4577 999999999999999987753310 1234444444333 578999999
Q ss_pred cccCCch
Q 011136 458 IHLGNHL 464 (493)
Q Consensus 458 tplG~~~ 464 (493)
||-+ +|
T Consensus 200 T~s~-~p 205 (325)
T PRK08618 200 TNAK-TP 205 (325)
T ss_pred cCCC-Cc
Confidence 9977 44
No 41
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00082 Score=67.91 Aligned_cols=142 Identities=20% Similarity=0.295 Sum_probs=88.4
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT 327 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~ 327 (493)
.-++| +|-+++.--.. -..++++|++.....++- +++.+.++.+ .+++..|.-|-.|.-..+ ...++.+++
T Consensus 37 ii~vg~~~as~~Yv~~k-~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p 115 (286)
T PRK14175 37 VILVGNDGASQSYVRSK-KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINP 115 (286)
T ss_pred EEEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence 34556 44444444333 456889999987766664 3577777777 567899999999964322 112222222
Q ss_pred HHHHhcceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136 328 VAKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK 401 (493)
Q Consensus 328 ~A~~igAvNti~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~ 401 (493)
.+.+-..+.. +-|+++ |. -.--.|++..|+.. +.+++||+++|+|.|+ +|+.++..|.
T Consensus 116 -~KDVDGl~~~----n~g~l~~~~~~~~PcTp~ai~~ll~~~-----------~i~l~Gk~vvVIGrs~~VG~pla~lL~ 179 (286)
T PRK14175 116 -EKDVDGFHPI----NIGKLYIDEQTFVPCTPLGIMEILKHA-----------DIDLEGKNAVVIGRSHIVGQPVSKLLL 179 (286)
T ss_pred -ccCcccCCcc----chHhHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCchhHHHHHHHHH
Confidence 1222222221 012222 11 11246666766652 2578999999999999 9999999999
Q ss_pred hCCCeEEEEeCCh
Q 011136 402 AKGARVVIANRTY 414 (493)
Q Consensus 402 ~~g~~i~v~~R~~ 414 (493)
..|+.|++++|..
T Consensus 180 ~~gatVtv~~s~t 192 (286)
T PRK14175 180 QKNASVTILHSRS 192 (286)
T ss_pred HCCCeEEEEeCCc
Confidence 9999999998853
No 42
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.59 E-value=0.00026 Score=72.29 Aligned_cols=74 Identities=15% Similarity=-0.058 Sum_probs=54.4
Q ss_pred CCCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI 457 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~ 457 (493)
..++++|+|+|++|++.+.++.. .+. +|+|+||+.++++++++.+..... .+. ..+.++.. .+.+|++++
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~------~~~-~~~~~~av-~~aDiVita 195 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGP------TAE-PLDGEAIP-EAVDLVVTA 195 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCC------eeE-ECCHHHHh-hcCCEEEEc
Confidence 46899999999999999999975 577 899999999999999998864321 111 12333222 466777777
Q ss_pred cccC
Q 011136 458 IHLG 461 (493)
Q Consensus 458 tplG 461 (493)
||-.
T Consensus 196 T~s~ 199 (304)
T PRK07340 196 TTSR 199 (304)
T ss_pred cCCC
Confidence 7743
No 43
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.52 E-value=0.00012 Score=78.08 Aligned_cols=74 Identities=26% Similarity=0.260 Sum_probs=57.3
Q ss_pred ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
.+.+++++|+|+|.+|+.++..|...|+ +|+++||+.++++++++.++....+ ..++.+.+ .++++++.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~---------~~~l~~~l-~~aDvVi~ 246 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVK---------FEDLEEYL-AEADIVIS 246 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEee---------HHHHHHHH-hhCCEEEE
Confidence 4678999999999999999999999996 9999999999999999877642211 12232333 46788998
Q ss_pred ccccC
Q 011136 457 IIHLG 461 (493)
Q Consensus 457 ~tplG 461 (493)
+|+-.
T Consensus 247 aT~s~ 251 (417)
T TIGR01035 247 STGAP 251 (417)
T ss_pred CCCCC
Confidence 88644
No 44
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.46 E-value=0.00054 Score=64.05 Aligned_cols=40 Identities=33% Similarity=0.381 Sum_probs=35.7
Q ss_pred cccCCCEEEEEecchH-HHHHHHHHHhCCCeEEEEeCChHH
Q 011136 377 SALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYGE 416 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGa-ara~~~~L~~~g~~i~v~~R~~~~ 416 (493)
.++++++++|+|+|++ |+.++..|.+.|++|+++||+.+.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~ 80 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN 80 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh
Confidence 4688999999999996 888999999999999999999643
No 45
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.44 E-value=0.00061 Score=69.64 Aligned_cols=83 Identities=17% Similarity=0.052 Sum_probs=59.8
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH 459 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp 459 (493)
+++.|||+|++|++++++|+..|. +|++++|+.++++.++.++........ ..+.+...-.+.. .+.+|++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~--~~~~i~~~~~~~l-~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP--SPVKIKAGDYSDC-KDADIVVITAG 77 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC--CCeEEEcCCHHHh-CCCCEEEEccC
Confidence 379999999999999999999994 899999999999999998865542111 1122222222233 68899999998
Q ss_pred c----CCchhhH
Q 011136 460 L----GNHLEWV 467 (493)
Q Consensus 460 l----G~~~~~~ 467 (493)
. |+....+
T Consensus 78 ~~~~~g~~R~dl 89 (306)
T cd05291 78 APQKPGETRLDL 89 (306)
T ss_pred CCCCCCCCHHHH
Confidence 7 5554443
No 46
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.40 E-value=0.00036 Score=73.26 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=65.1
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII 458 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t 458 (493)
+.+++++|+|+|++|+.++..|..+|++|++++|+.++.+.+...+....... ... ...+.+.. .+.++++|++
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~--~~~---~~~l~~~l-~~aDvVI~a~ 238 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTR--YSN---AYEIEDAV-KRADLLIGAV 238 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEec--cCC---HHHHHHHH-ccCCEEEEcc
Confidence 45678999999999999999999999999999999999888877654311000 000 01222333 5689999999
Q ss_pred cc-CCc-hhhHhhhhhHHHHhhccceEeee
Q 011136 459 HL-GNH-LEWVTAAFNLFFYLTCNSYVVME 486 (493)
Q Consensus 459 pl-G~~-~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
++ |.. |..+..... ..+-++.+|.|
T Consensus 239 ~~~g~~~p~lit~~~l---~~mk~g~vIvD 265 (370)
T TIGR00518 239 LIPGAKAPKLVSNSLV---AQMKPGAVIVD 265 (370)
T ss_pred ccCCCCCCcCcCHHHH---hcCCCCCEEEE
Confidence 87 553 433332222 22334566766
No 47
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.25 E-value=0.00032 Score=72.44 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=66.2
Q ss_pred chHHHhhhhhhhcHHHHHhcceeeEEEe---c--cCCe------EEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCC
Q 011136 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRR---Q--SDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGK 382 (493)
Q Consensus 314 ~K~~v~~~~d~~~~~A~~igAvNti~~~---~--~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~ 382 (493)
--.+|++++.+.-..|+..|+++..+.+ . ..|| -+|.+-=..+.+ +.+. ... ..+++++
T Consensus 106 GE~QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRteT~I~~~~vSv~s~-av~~-~~~--------~~~l~~k 175 (338)
T PRK00676 106 GETEIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAPYAEVTIESV-VQQE-LRR--------RQKSKKA 175 (338)
T ss_pred CcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHH-HHH--------hCCccCC
Confidence 3568999999999999999988776533 0 1122 234443344443 2221 111 1357899
Q ss_pred EEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGE 416 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~ 416 (493)
++||||+|.||+.++.+|.+.|+ +|+|+|||.+.
T Consensus 176 ~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~ 210 (338)
T PRK00676 176 SLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT 210 (338)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 99999999999999999999998 89999999853
No 48
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.07 E-value=0.0061 Score=56.49 Aligned_cols=92 Identities=24% Similarity=0.170 Sum_probs=53.1
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.||+++|+|.|..|+.+|.+|+..|++|+|+.+++-++-+-.. .... + ..+++.. ++.+|++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~--dGf~----------v-~~~~~a~-~~adi~vt 84 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAM--DGFE----------V-MTLEEAL-RDADIFVT 84 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH--TT-E----------E-E-HHHHT-TT-SEEEE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh--cCcE----------e-cCHHHHH-hhCCEEEE
Confidence 5678999999999999999999999999999999999977654332 2111 1 1222222 45567777
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT 488 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
+|.-- +.+. .+.|..+.++.+|.+-+
T Consensus 85 aTG~~---~vi~---~e~~~~mkdgail~n~G 110 (162)
T PF00670_consen 85 ATGNK---DVIT---GEHFRQMKDGAILANAG 110 (162)
T ss_dssp -SSSS---SSB----HHHHHHS-TTEEEEESS
T ss_pred CCCCc---cccC---HHHHHHhcCCeEEeccC
Confidence 66542 1111 22345566777776543
No 49
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00067 Score=71.22 Aligned_cols=83 Identities=24% Similarity=0.269 Sum_probs=55.5
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL 460 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl 460 (493)
+++||||+|+.|++++.-|++.|- +|+|++|+.+++.++++.... ......-| +.-.+.+.+-. .++++++|+.|=
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-~v~~~~vD-~~d~~al~~li-~~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-KVEALQVD-AADVDALVALI-KDFDLVINAAPP 78 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-cceeEEec-ccChHHHHHHH-hcCCEEEEeCCc
Confidence 579999999999999999999995 999999999999999775422 11111011 00001222223 556889988775
Q ss_pred CCchhhH
Q 011136 461 GNHLEWV 467 (493)
Q Consensus 461 G~~~~~~ 467 (493)
=.....+
T Consensus 79 ~~~~~i~ 85 (389)
T COG1748 79 FVDLTIL 85 (389)
T ss_pred hhhHHHH
Confidence 5555444
No 50
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.03 E-value=0.0016 Score=68.48 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=55.6
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEE
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVI 438 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~ 438 (493)
+++++|+|+|+||.|..++..|+..|+ +|++++++ ..|++.+++.+...+.. -++.
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----v~v~ 208 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD----VQVE 208 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC----CEEE
Confidence 346789999999999999999999999 99999998 67888888887665421 1222
Q ss_pred EEeec-c----cccCCceEEEEeccc
Q 011136 439 VIRIL-L----FTWHLKFFIAANIIH 459 (493)
Q Consensus 439 v~~~l-~----~~~~~~~~i~~n~tp 459 (493)
..... + +.+-.++++++++|-
T Consensus 209 ~~~~~~~~~~~~~~~~~~D~Vv~~~d 234 (376)
T PRK08762 209 AVQERVTSDNVEALLQDVDVVVDGAD 234 (376)
T ss_pred EEeccCChHHHHHHHhCCCEEEECCC
Confidence 22211 1 112256889998863
No 51
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.95 E-value=0.0013 Score=65.71 Aligned_cols=87 Identities=18% Similarity=0.151 Sum_probs=66.1
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEe--------------ec
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIR--------------IL 443 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~--------------~l 443 (493)
..++++||-|| +|.|++++..|++.|+++.++.|+.+|.++|++++....- -.|+++. ++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~-----v~v~vi~~DLs~~~~~~~l~~~l 78 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTG-----VEVEVIPADLSDPEALERLEDEL 78 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhC-----ceEEEEECcCCChhHHHHHHHHH
Confidence 45789999999 9999999999999999999999999999999998886551 0122221 12
Q ss_pred ccccCCceEEEEeccccCCchhhHhhhh
Q 011136 444 LFTWHLKFFIAANIIHLGNHLEWVTAAF 471 (493)
Q Consensus 444 ~~~~~~~~~i~~n~tplG~~~~~~~~~~ 471 (493)
.+.- .+.+++||.-+.|.........|
T Consensus 79 ~~~~-~~IdvLVNNAG~g~~g~f~~~~~ 105 (265)
T COG0300 79 KERG-GPIDVLVNNAGFGTFGPFLELSL 105 (265)
T ss_pred HhcC-CcccEEEECCCcCCccchhhCCh
Confidence 2221 25799999999999875554444
No 52
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.94 E-value=0.0023 Score=59.13 Aligned_cols=91 Identities=15% Similarity=0.073 Sum_probs=56.3
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEecccc
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANIIHL 460 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~tpl 460 (493)
+++-+||.|-||++++..|.+.|++|+++||+.++++++.+.- +++..+..+--. .+..+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g------------~~~~~s~~e~~~~~dvvi~~----- 64 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG------------AEVADSPAEAAEQADVVILC----- 64 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT------------EEEESSHHHHHHHBSEEEE------
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh------------hhhhhhhhhHhhcccceEee-----
Confidence 4789999999999999999999999999999999999988642 111222221110 2334444
Q ss_pred CCch-hhHhhhhhH--HHHhhccceEeeecccc
Q 011136 461 GNHL-EWVTAAFNL--FFYLTCNSYVVMEKTEI 490 (493)
Q Consensus 461 G~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~ 490 (493)
++. +.+.+-+.. .+..+-++.+++|-|-+
T Consensus 65 -v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 65 -VPDDDAVEAVLFGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp -SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred -cccchhhhhhhhhhHHhhccccceEEEecCCc
Confidence 443 334333333 45555788899887643
No 53
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.77 E-value=0.013 Score=56.79 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=38.1
Q ss_pred EEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 383 LFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 383 ~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
++.||| +|.+|.+++..|.+.|.+|++++|+.++++.+++.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~ 44 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKA 44 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHH
Confidence 589997 899999999999999999999999999998887754
No 54
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.77 E-value=0.0073 Score=61.48 Aligned_cols=131 Identities=20% Similarity=0.233 Sum_probs=85.0
Q ss_pred HHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec----
Q 011136 272 YNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ---- 342 (493)
Q Consensus 272 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~---- 342 (493)
-...++++|++.....++- +++.+.++.+ .+++..|+-|-+|.-. ++|+ -+.+.+++.-.--+
T Consensus 54 k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~----~i~~----~~i~~~I~p~KDVDGl~~ 125 (301)
T PRK14194 54 KILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPA----HIDE----ARVLQAINPLKDVDGFHS 125 (301)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCC----CCCH----HHHHhccCchhccCccCh
Confidence 3457889999987666653 3677777777 5678999999999742 2221 11222332221110
Q ss_pred -cCCeE-EEEe----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecc-hHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 343 -SDGKL-FGYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 343 -~~g~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaG-Gaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
+-|++ .|.+ .--.|++.-|+.. +.+++||+++|||.| -+|+.++..|.+.|+.|++++|+..
T Consensus 126 ~N~g~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~ 194 (301)
T PRK14194 126 ENVGGLSQGRDVLTPCTPSGCLRLLEDT-----------CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST 194 (301)
T ss_pred hhhhHHhcCCCCCCCCcHHHHHHHHHHh-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC
Confidence 01222 1211 1256777776653 267899999999997 5999999999999999999988765
Q ss_pred HHHHHH
Q 011136 416 ESLTFL 421 (493)
Q Consensus 416 ~a~~la 421 (493)
..++++
T Consensus 195 ~l~e~~ 200 (301)
T PRK14194 195 DAKALC 200 (301)
T ss_pred CHHHHH
Confidence 444443
No 55
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.76 E-value=0.0034 Score=65.20 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=55.3
Q ss_pred ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh---------------------HHHHHHHHHhhhhhhcccccc
Q 011136 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY---------------------GESLTFLRLMSWLLLNTLLFD 435 (493)
Q Consensus 378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~---------------------~~a~~la~~~~~~~~~~~~~~ 435 (493)
.+++++|+|+|+||.|..++..|+..|+ +|+|++++. .|++.+++.+...+.. -
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~----v 96 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSE----V 96 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCC----c
Confidence 3567899999999999999999999999 999999974 4787787777765521 1
Q ss_pred eEEEEe------ecccccCCceEEEEecc
Q 011136 436 SVIVIR------ILLFTWHLKFFIAANII 458 (493)
Q Consensus 436 ~~~v~~------~l~~~~~~~~~i~~n~t 458 (493)
++..+. ++++ .-.++++++++|
T Consensus 97 ~i~~~~~~~~~~~~~~-~~~~~DlVid~~ 124 (338)
T PRK12475 97 EIVPVVTDVTVEELEE-LVKEVDLIIDAT 124 (338)
T ss_pred EEEEEeccCCHHHHHH-HhcCCCEEEEcC
Confidence 222221 1122 236688898887
No 56
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.72 E-value=0.0043 Score=58.26 Aligned_cols=94 Identities=22% Similarity=0.118 Sum_probs=59.3
Q ss_pred ccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA 455 (493)
Q Consensus 376 ~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~ 455 (493)
...+.|+++.|+|.|..|++++..|...|++|+.++|+........ ..... ..++++-+ +..++++
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-~~~~~------------~~~l~ell-~~aDiv~ 96 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-EFGVE------------YVSLDELL-AQADIVS 96 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-HTTEE------------ESSHHHHH-HH-SEEE
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-cccce------------eeehhhhc-chhhhhh
Confidence 3678899999999999999999999999999999999987655121 11111 12343333 5578888
Q ss_pred eccccCCchhhHhhhhhHHHHhhcc-ceEeee
Q 011136 456 NIIHLGNHLEWVTAAFNLFFYLTCN-SYVVME 486 (493)
Q Consensus 456 n~tplG~~~~~~~~~~~~~~~~~~~-~~~~~~ 486 (493)
+..|+--.-..+ ++..+...+| +.++.+
T Consensus 97 ~~~plt~~T~~l---i~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 97 LHLPLTPETRGL---INAEFLAKMKPGAVLVN 125 (178)
T ss_dssp E-SSSSTTTTTS---BSHHHHHTSTTTEEEEE
T ss_pred hhhcccccccee---eeeeeeeccccceEEEe
Confidence 888865443333 3444444444 444443
No 57
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.71 E-value=0.0039 Score=59.98 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=38.6
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH-HHHHHH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE-SLTFLR 422 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~-a~~la~ 422 (493)
.+++||+|||+|+|.+|...+..|.+.|++|+|++++..+ .+++++
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~ 52 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVE 52 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHh
Confidence 5688999999999999999999999999999999987633 344443
No 58
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.69 E-value=0.004 Score=57.29 Aligned_cols=80 Identities=21% Similarity=0.074 Sum_probs=53.7
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh-hc-ccccceEEEEeecccccC-CceEEEEeccc
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL-LN-TLLFDSVIVIRILLFTWH-LKFFIAANIIH 459 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~-~~-~~~~~~~~v~~~l~~~~~-~~~~i~~n~tp 459 (493)
+|.|+|+|..|.|++..|+..|.+|+++.|+.+..+.+.+.-.... ++ -...+++++-.++++... .|..|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia---- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA---- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-----
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec----
Confidence 5899999999999999999999999999999988888876433211 11 111236677676654431 3344444
Q ss_pred cCCchhhHh
Q 011136 460 LGNHLEWVT 468 (493)
Q Consensus 460 lG~~~~~~~ 468 (493)
++..++.
T Consensus 77 --vPs~~~~ 83 (157)
T PF01210_consen 77 --VPSQAHR 83 (157)
T ss_dssp --S-GGGHH
T ss_pred --ccHHHHH
Confidence 5555554
No 59
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.69 E-value=0.0056 Score=57.75 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=35.6
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+|.|||+|-||++++..++..|++|++++++.+..++..+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~ 43 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE 43 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH
Confidence 5889999999999999999999999999999888776655444
No 60
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.61 E-value=0.0082 Score=64.06 Aligned_cols=45 Identities=33% Similarity=0.402 Sum_probs=39.9
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL 421 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la 421 (493)
..+.|++|+|+|+|.+|+.++..|+..|++|+++++++.++...+
T Consensus 208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~ 252 (425)
T PRK05476 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA 252 (425)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH
Confidence 346799999999999999999999999999999999998875443
No 61
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.51 E-value=0.0048 Score=62.37 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=63.5
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCC
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGN 462 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~ 462 (493)
++.+||-|-||..++..|.+.|++++++||+++++.+++...+.....+. .+.. .+.++++=..|=+-
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~--------~eaa----~~aDvVitmv~~~~ 69 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASP--------AEAA----AEADVVITMLPDDA 69 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCH--------HHHH----HhCCEEEEecCCHH
Confidence 68899999999999999999999999999999997777766554432110 0011 22334443333333
Q ss_pred chhhHhhhhhHHHHhhccceEeeecccc
Q 011136 463 HLEWVTAAFNLFFYLTCNSYVVMEKTEI 490 (493)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (493)
+-+.+...-+-.+....++.+|+|-+.|
T Consensus 70 ~V~~V~~g~~g~~~~~~~G~i~IDmSTi 97 (286)
T COG2084 70 AVRAVLFGENGLLEGLKPGAIVIDMSTI 97 (286)
T ss_pred HHHHHHhCccchhhcCCCCCEEEECCCC
Confidence 3333333334556666789999998765
No 62
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.50 E-value=0.0033 Score=53.78 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=33.3
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
.+++|+++||+|+|.+|..-+..|.+.|++|+|++.+.
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45789999999999999999999999999999999997
No 63
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.47 E-value=0.013 Score=58.94 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=58.3
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccc-ccCCceEEEEe
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA----RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLF-TWHLKFFIAAN 456 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~----~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~i~~n 456 (493)
.++.+||+|-||.+++..|.+.|. +|++++|+.++++.+++.++.... .+..+ -+..|..|++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~-----------~~~~e~~~~aDiIiLa- 70 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITIT-----------TNNNEVANSADILILS- 70 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEe-----------CCcHHHHhhCCEEEEE-
Confidence 479999999999999999999873 699999999999888775542111 11111 1224566666
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVME 486 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
++|..+.+-....-...-++.+|.+
T Consensus 71 -----vkP~~~~~vl~~l~~~~~~~~lvIS 95 (272)
T PRK12491 71 -----IKPDLYSSVINQIKDQIKNDVIVVT 95 (272)
T ss_pred -----eChHHHHHHHHHHHHhhcCCcEEEE
Confidence 8887777655432222223456654
No 64
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.46 E-value=0.019 Score=58.03 Aligned_cols=42 Identities=24% Similarity=0.194 Sum_probs=37.3
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
++|.|||+|-+|.+++..|+..|.+|++++|+.++.++..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKER 45 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 579999999999999999999999999999998877766544
No 65
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.45 E-value=0.003 Score=62.03 Aligned_cols=81 Identities=27% Similarity=0.249 Sum_probs=59.5
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccc------eEEEEeecccccCCce
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFD------SVIVIRILLFTWHLKF 451 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~------~~~v~~~l~~~~~~~~ 451 (493)
+++|-++|=|| .|.|.|++..|++.|+++.+..|..++.++|+.++.....-....| .-..++.+.+.| .+.
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~-g~i 82 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEF-GRI 82 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhh-Ccc
Confidence 35688899998 7899999999999999999999999999999999884111011111 011123455778 779
Q ss_pred EEEEecccc
Q 011136 452 FIAANIIHL 460 (493)
Q Consensus 452 ~i~~n~tpl 460 (493)
+|++|--++
T Consensus 83 DiLvNNAGl 91 (246)
T COG4221 83 DILVNNAGL 91 (246)
T ss_pred cEEEecCCC
Confidence 999996554
No 66
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.41 E-value=0.013 Score=56.92 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=42.6
Q ss_pred ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC------------------hHHHHHHHHHhhhhh
Q 011136 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT------------------YGESLTFLRLMSWLL 428 (493)
Q Consensus 378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~------------------~~~a~~la~~~~~~~ 428 (493)
.++.++|+|+|+||+|..++..|+..|+ +|++++.+ ..|++.+++.+...+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln 94 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN 94 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC
Confidence 3567899999999999999999999999 89999887 257777777666554
No 67
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.41 E-value=0.042 Score=49.74 Aligned_cols=75 Identities=16% Similarity=0.039 Sum_probs=55.8
Q ss_pred EEEEEec-chHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136 383 LFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH 459 (493)
Q Consensus 383 ~vlvlGa-GGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp 459 (493)
||.|+|+ |..|.++++.|...+. +|++++++.++++..+.+++....... -..++-....+.. .+.+|++-+..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~--~~~~i~~~~~~~~-~~aDivvitag 78 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP--SPVRITSGDYEAL-KDADIVVITAG 78 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST--EEEEEEESSGGGG-TTESEEEETTS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc--ccccccccccccc-ccccEEEEecc
Confidence 6899999 9999999999999986 899999999999999988886653221 1233333444444 56777776654
Q ss_pred c
Q 011136 460 L 460 (493)
Q Consensus 460 l 460 (493)
.
T Consensus 79 ~ 79 (141)
T PF00056_consen 79 V 79 (141)
T ss_dssp T
T ss_pred c
Confidence 4
No 68
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.39 E-value=0.0062 Score=63.13 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=43.1
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~ 425 (493)
..+++++|+|+|| |.+|+.++..|.. .|+ +++++||+.++++.+++++.
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~ 202 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG 202 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc
Confidence 4678999999999 6799999999975 476 99999999999999988765
No 69
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.38 E-value=0.0073 Score=56.69 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=38.3
Q ss_pred EEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh------------------HHHHHHHHHhhhhh
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY------------------GESLTFLRLMSWLL 428 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~------------------~~a~~la~~~~~~~ 428 (493)
+|+|+|+||+|..++..|+..|+ ++++++.+. .|++.+++.+...+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln 65 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN 65 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC
Confidence 48999999999999999999999 899999875 56666666665544
No 70
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.38 E-value=0.011 Score=61.81 Aligned_cols=76 Identities=20% Similarity=0.083 Sum_probs=55.0
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhhhcccccceEE
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLLLNTLLFDSVI 438 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~~~~~~~~~~~ 438 (493)
+++++|+|+|+||.|..++..|+..|+ +|+|++.+. .|++.+++.+...+.. -++.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~----v~v~ 101 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD----VKVT 101 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC----cEEE
Confidence 567899999999999999999999999 999988764 6788888777765521 1333
Q ss_pred EEe-ecc----cccCCceEEEEecc
Q 011136 439 VIR-ILL----FTWHLKFFIAANII 458 (493)
Q Consensus 439 v~~-~l~----~~~~~~~~i~~n~t 458 (493)
.+. .+. ..+-.++++++++|
T Consensus 102 ~~~~~i~~~~~~~~~~~~DvVvd~~ 126 (355)
T PRK05597 102 VSVRRLTWSNALDELRDADVILDGS 126 (355)
T ss_pred EEEeecCHHHHHHHHhCCCEEEECC
Confidence 322 111 12336788888776
No 71
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.36 E-value=0.018 Score=58.70 Aligned_cols=140 Identities=21% Similarity=0.250 Sum_probs=85.5
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeeccc--c--ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~--~--~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 329 (493)
.-++| +|-+++.-- .--..++++|++..-..++ + +++.+.++.+ .+++..|.-|-.|.-.. +|+ .
T Consensus 37 ~i~vg~~~~s~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~----~~~---~- 107 (296)
T PRK14188 37 VVLVGEDPASQVYVR-SKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKH----LDS---E- 107 (296)
T ss_pred EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC----CCH---H-
Confidence 33455 343333332 2345688999987654443 2 4677777777 56789999999997422 221 1
Q ss_pred HHhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEe-cchHHHHHHH
Q 011136 330 KSIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIG-AGGAGKALAY 398 (493)
Q Consensus 330 ~~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlG-aGGaara~~~ 398 (493)
+.+.+++--.--+ +-|++. |. -.-..|++.-|+.. +.+++||+|+|+| +|-+|+.++.
T Consensus 108 ~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~-----------~i~~~Gk~V~viGrs~~mG~PmA~ 176 (296)
T PRK14188 108 AVIQAIDPEKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRV-----------HGDLSGLNAVVIGRSNLVGKPMAQ 176 (296)
T ss_pred HHHhccCcccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEEcCCcchHHHHHH
Confidence 1222222221100 001211 10 11156666666642 2578999999999 7889999999
Q ss_pred HHHhCCCeEEEE-eCChH
Q 011136 399 GAKAKGARVVIA-NRTYG 415 (493)
Q Consensus 399 ~L~~~g~~i~v~-~R~~~ 415 (493)
.|.+.|+.|+++ +||.+
T Consensus 177 ~L~~~g~tVtv~~~rT~~ 194 (296)
T PRK14188 177 LLLAANATVTIAHSRTRD 194 (296)
T ss_pred HHHhCCCEEEEECCCCCC
Confidence 999999999999 58863
No 72
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.35 E-value=0.0073 Score=58.01 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=54.6
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEE
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVI 438 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~ 438 (493)
+++++|+|+|+||.|..++..|+..|+ +|++++++ ..|++.+++.+...+. .-++.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np----~v~i~ 94 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS----DIQVT 94 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC----CCEEE
Confidence 567899999999999999999999999 99999987 5788888887776542 11222
Q ss_pred EEe------ecccccCCceEEEEecc
Q 011136 439 VIR------ILLFTWHLKFFIAANII 458 (493)
Q Consensus 439 v~~------~l~~~~~~~~~i~~n~t 458 (493)
.+. ++.+.+ .++++++.++
T Consensus 95 ~~~~~i~~~~~~~~~-~~~D~Vi~~~ 119 (202)
T TIGR02356 95 ALKERVTAENLELLI-NNVDLVLDCT 119 (202)
T ss_pred EehhcCCHHHHHHHH-hCCCEEEECC
Confidence 221 111223 5678888776
No 73
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.35 E-value=0.016 Score=62.75 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=61.8
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc----CCceEEEEecc
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW----HLKFFIAANII 458 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~----~~~~~i~~n~t 458 (493)
++.|||.|-||.+++..|++.|++|+++||+.++++++.+....... ++....++++-. .++..|+.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~------~i~~~~s~~e~v~~l~~~d~Iil~--- 73 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT------RVKGYHTLEELVNSLKKPRKVILL--- 73 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC------cceecCCHHHHHhcCCCCCEEEEE---
Confidence 58899999999999999999999999999999999999764222110 111112222111 13433333
Q ss_pred ccCCc-hhhHhhhhhHHHHhhccceEeeecccc
Q 011136 459 HLGNH-LEWVTAAFNLFFYLTCNSYVVMEKTEI 490 (493)
Q Consensus 459 plG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (493)
++ ++.+.+-+......+.++.+|+|-+..
T Consensus 74 ---v~~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 74 ---IKAGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred ---eCChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 33 344444444444445678999997754
No 74
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.34 E-value=0.032 Score=56.41 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=86.7
Q ss_pred EEeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136 256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (493)
Q Consensus 256 ~~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 329 (493)
.-++|+ |-+++.- ..-...++++|++.....++. +++.+.++.+ .+++..|+-|-+|.... +|+ -
T Consensus 38 ii~vg~d~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~----~~~----~ 108 (285)
T PRK10792 38 VVLVGSDPASQVYV-ASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAH----IDN----V 108 (285)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH----H
Confidence 344664 3333333 233557889999987666643 4677777777 46789999999997532 221 1
Q ss_pred HHhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHH
Q 011136 330 KSIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAY 398 (493)
Q Consensus 330 ~~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~ 398 (493)
+.+.+++.-.--+ +-|+++ |. -.--.|++..|+.. +.+++||+++|+|-|. .|+-++.
T Consensus 109 ~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrs~iVG~Pla~ 177 (285)
T PRK10792 109 KVLERIHPDKDVDGFHPYNVGRLAQRIPLLRPCTPRGIMTLLERY-----------GIDTYGLNAVVVGASNIVGRPMSL 177 (285)
T ss_pred HHHhccCcccccCccChhhHhHHhCCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCcccHHHHHH
Confidence 2222222221110 001211 11 12256777777652 2678999999999999 9999999
Q ss_pred HHHhCCCeEEEEeCC
Q 011136 399 GAKAKGARVVIANRT 413 (493)
Q Consensus 399 ~L~~~g~~i~v~~R~ 413 (493)
-|...|+.|+++.+.
T Consensus 178 lL~~~~atVtv~hs~ 192 (285)
T PRK10792 178 ELLLAGCTVTVCHRF 192 (285)
T ss_pred HHHHCCCeEEEEECC
Confidence 999999999999875
No 75
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.25 E-value=0.041 Score=55.48 Aligned_cols=139 Identities=21% Similarity=0.280 Sum_probs=86.7
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 329 (493)
.-++| +|-+++.-- .-...++++|++.....++- +++.+.++.+ .+++..|.-|-.|.-.. +|+ -
T Consensus 31 ii~vg~d~as~~Yv~-~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~----i~~----~ 101 (279)
T PRK14178 31 TVIVGDDPASQMYVR-MKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKG----VDT----E 101 (279)
T ss_pred EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH----H
Confidence 34556 344443332 33456889999987766654 3677777777 56889999999997432 221 1
Q ss_pred HHhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecc-hHHHHHHH
Q 011136 330 KSIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAY 398 (493)
Q Consensus 330 ~~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaG-Gaara~~~ 398 (493)
+.+.+++.-.--+ +-|+++ |. -.--.|++.-|+.. +.+++|++|+|+|.+ -.||.++.
T Consensus 102 ~v~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~V~ViGrs~~vGrpla~ 170 (279)
T PRK14178 102 RVIAAILPEKDVDGFHPLNLGRLVSGLPGFAPCTPNGIMTLLHEY-----------KISIAGKRAVVVGRSIDVGRPMAA 170 (279)
T ss_pred HHHhccCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCccccHHHHH
Confidence 1222222221100 012221 11 11246677766652 267899999999999 59999999
Q ss_pred HHHhCCCeEEEEeCCh
Q 011136 399 GAKAKGARVVIANRTY 414 (493)
Q Consensus 399 ~L~~~g~~i~v~~R~~ 414 (493)
-|...|+.|+++.++.
T Consensus 171 lL~~~~atVtv~hs~t 186 (279)
T PRK14178 171 LLLNADATVTICHSKT 186 (279)
T ss_pred HHHhCCCeeEEEecCh
Confidence 9999999999988754
No 76
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.24 E-value=0.12 Score=49.97 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=75.9
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (493)
Q Consensus 26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (493)
+..-+...+.++....++.+.+.|+.++|+|.+-- +..+.++.+++..+.++++=.- .. -..++ ++
T Consensus 12 ~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaG-----TV---~~~~~---~~ 77 (206)
T PRK09140 12 LIAILRGITPDEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAG-----TV---LSPEQ---VD 77 (206)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEE-----ec---CCHHH---HH
Confidence 33458899999999999999999999999997542 2245677777666555443221 11 11222 35
Q ss_pred HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136 106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (493)
Q Consensus 106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi 172 (493)
.+++.|++++=. =..+.+..+. .+..+..++.+.| || . .+.++.+.|+|++|+
T Consensus 78 ~a~~aGA~fivs-p~~~~~v~~~---~~~~~~~~~~G~~----t~--~----E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 78 RLADAGGRLIVT-PNTDPEVIRR---AVALGMVVMPGVA----TP--T----EAFAALRAGAQALKL 130 (206)
T ss_pred HHHHcCCCEEEC-CCCCHHHHHH---HHHCCCcEEcccC----CH--H----HHHHHHHcCCCEEEE
Confidence 677889998732 1112222222 2345777788877 33 2 346667799999997
No 77
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.24 E-value=0.024 Score=57.01 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=36.1
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
+|.|||.|-+|.+++.+|.+.|.+|++++|+.++.+++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999999999999888777654
No 78
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.23 E-value=0.02 Score=61.49 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=38.3
Q ss_pred EEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 383 LFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 383 ~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++.|+| .|++|.+++.+|.+.|.+|++++|+.+++++++..++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~g 45 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELG 45 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcC
Confidence 689998 7999999999999999999999999988877777654
No 79
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.20 E-value=0.024 Score=52.57 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=41.1
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL 428 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~ 428 (493)
+++|++.|||.|.-|++-+..|.+.|++|.|..|..++..+.|+.-++.-
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v 51 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV 51 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee
Confidence 46899999999999999999999999999999999888888888766554
No 80
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.18 E-value=0.013 Score=60.79 Aligned_cols=36 Identities=39% Similarity=0.536 Sum_probs=33.2
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~ 414 (493)
++.++|+|+|+||.|..++..|+..|+ +|++++++.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 567899999999999999999999999 999999873
No 81
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.18 E-value=0.012 Score=56.89 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=38.5
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG-ESLTFLR 422 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~ 422 (493)
.+++|++|||+|+|.+|..-+..|.+.|++|+|++.+.. ..+++++
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~ 51 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAE 51 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHH
Confidence 567899999999999999999999999999999998764 3344443
No 82
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.18 E-value=0.14 Score=48.57 Aligned_cols=130 Identities=17% Similarity=0.100 Sum_probs=82.7
Q ss_pred cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 011136 24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVD 102 (493)
Q Consensus 24 ~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ 102 (493)
+.||+.|-..+.++...-++.+.+. +|.+|+-..+....- .+.++.+++. .+.|++.+..... .+ . .
T Consensus 1 ~~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~~-~~-------~--~ 68 (202)
T cd04726 1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTAD-AG-------A--L 68 (202)
T ss_pred CceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEecc-cc-------H--H
Confidence 5689999999999999988887665 999999655542211 2467777765 4789998765421 11 1 2
Q ss_pred HHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136 103 VLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (493)
Q Consensus 103 ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi 172 (493)
.++.+.+.|++++-+-.....+..+++. ..++.+.++++..+.. .| ..+.. + +...|+|++++
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~-~t--~~e~~---~-~~~~~~d~v~~ 132 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV-ED--PEKRA---K-LLKLGVDIVIL 132 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC-CC--HHHHH---H-HHHCCCCEEEE
Confidence 3467788899999875544332223333 2234577888754421 12 22332 2 66679999998
No 83
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.17 E-value=0.0075 Score=61.97 Aligned_cols=89 Identities=22% Similarity=0.085 Sum_probs=63.6
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEe-ecc----------
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIR-ILL---------- 444 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~-~l~---------- 444 (493)
.++.++.++|-|+ .|.|++++..|+..|++|++.+|+.++++++++.+..... ..++++.. ++.
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~----~~~i~~~~lDLssl~SV~~fa~ 106 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKA----NQKIRVIQLDLSSLKSVRKFAE 106 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCceEEEECCCCCHHHHHHHHH
Confidence 4567889999998 8999999999999999999999999999999998876221 11111110 111
Q ss_pred --cccCCceEEEEeccccCCchhhHhh
Q 011136 445 --FTWHLKFFIAANIIHLGNHLEWVTA 469 (493)
Q Consensus 445 --~~~~~~~~i~~n~tplG~~~~~~~~ 469 (493)
...-....+++|--.+..+|..+++
T Consensus 107 ~~~~~~~~ldvLInNAGV~~~~~~~t~ 133 (314)
T KOG1208|consen 107 EFKKKEGPLDVLINNAGVMAPPFSLTK 133 (314)
T ss_pred HHHhcCCCccEEEeCcccccCCcccCc
Confidence 1112446888887777777765554
No 84
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.16 E-value=0.012 Score=61.02 Aligned_cols=94 Identities=19% Similarity=0.120 Sum_probs=61.4
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.||++.|||.|.+|++++..|...|++|.+++|+..... ...++... .++++-. ++.++++.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--~~~~~~~~------------~~l~ell-~~aDiV~l 210 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA--EKELGAEY------------RPLEELL-RESDFVSL 210 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh--HHHcCCEe------------cCHHHHH-hhCCEEEE
Confidence 457899999999999999999999999999999999865432 22221110 1233322 45677887
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK 487 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
++|+.-.-..+... ..|..+-++.++++-
T Consensus 211 ~lP~t~~T~~~i~~--~~~~~mk~ga~lIN~ 239 (333)
T PRK13243 211 HVPLTKETYHMINE--ERLKLMKPTAILVNT 239 (333)
T ss_pred eCCCChHHhhccCH--HHHhcCCCCeEEEEC
Confidence 78765544444322 345554556666654
No 85
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.15 E-value=0.021 Score=56.52 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=52.3
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhhhcccccceEE
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLLLNTLLFDSVI 438 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~~~~~~~~~~~ 438 (493)
+++++|+|+|+||.|..++..|+..|+ +++|++.+. .|++.+++.+...+. .-++.
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp----~v~i~ 105 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP----HIAIE 105 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC----CCEEE
Confidence 567899999999999999999999999 999986532 466666666655442 11233
Q ss_pred EEeec------ccccCCceEEEEeccc
Q 011136 439 VIRIL------LFTWHLKFFIAANIIH 459 (493)
Q Consensus 439 v~~~l------~~~~~~~~~i~~n~tp 459 (493)
.+... ++.| .+++|+++++-
T Consensus 106 ~~~~~i~~~~~~~~~-~~~DiVi~~~D 131 (245)
T PRK05690 106 TINARLDDDELAALI-AGHDLVLDCTD 131 (245)
T ss_pred EEeccCCHHHHHHHH-hcCCEEEecCC
Confidence 22211 1224 56889998873
No 86
>PRK07680 late competence protein ComER; Validated
Probab=96.13 E-value=0.02 Score=57.36 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=37.2
Q ss_pred EEEEEecchHHHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHh
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA----RVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~----~i~v~~R~~~~a~~la~~~ 424 (493)
++.|||+|.+|.+++.+|.+.|. +|++++|+.++++.+++.+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~ 47 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY 47 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc
Confidence 58899999999999999999883 7999999999998887654
No 87
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.12 E-value=0.014 Score=61.27 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=42.4
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhh
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLL 428 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~ 428 (493)
+++++|+|+|+||.|..++..|+..|+ +|++++.+ ..|++.+++.+...+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 457899999999999999999999998 99998875 467777777776555
No 88
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.11 E-value=0.014 Score=57.02 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=42.8
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
.+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~ 56 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG 56 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence 467899999997 8899999999999999999999999888877766543
No 89
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.10 E-value=0.026 Score=56.74 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=56.9
Q ss_pred CEEEEEecchHHHHHHHHHHhCC----CeEEEEeCCh-HHHHHHHHHhhhhhhcccccceEEEEeeccc-ccCCceEEEE
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKG----ARVVIANRTY-GESLTFLRLMSWLLLNTLLFDSVIVIRILLF-TWHLKFFIAA 455 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g----~~i~v~~R~~-~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~i~~ 455 (493)
.++.+||+|-||.+++..|.+.| .+|+++||+. ++++.+++.++... ..+..+ ....|..|++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~-----------~~~~~e~~~~aDvVila 72 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKG-----------THNKKELLTDANILFLA 72 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceE-----------eCCHHHHHhcCCEEEEE
Confidence 47999999999999999999988 4899999986 46777776554211 111111 1124556666
Q ss_pred eccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136 456 NIIHLGNHLEWVTAAFNLFFYLTCNSYVVME 486 (493)
Q Consensus 456 n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
++|..+.+.........-++.+|++
T Consensus 73 ------v~p~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 73 ------MKPKDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred ------eCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 7777776554333222234566666
No 90
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.09 E-value=0.017 Score=56.82 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=41.0
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhh
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLL 428 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~ 428 (493)
+++++|+|+|.||.|..++.+|+..|+ ++++++.+. .|++.+++.+...+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~in 78 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDIN 78 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHC
Confidence 557899999999999999999999999 999987542 47777777766555
No 91
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.09 E-value=0.012 Score=54.42 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=36.3
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL 421 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la 421 (493)
.+++|++|+|+|+|.+|..-+..|.+.|++|+|++.+ ..+++.
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~ 51 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMK 51 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHH
Confidence 5788999999999999999999999999999999644 344443
No 92
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.08 E-value=0.098 Score=51.13 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=88.0
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh--CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE--SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG 111 (493)
Q Consensus 34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~ 111 (493)
+.++...-++++.+.|+|++=+..-++. ...+. ...|++..++...-=|.-..+.+....-.+.+++.|
T Consensus 19 ~~~d~~~~~~~~~~~g~~av~v~~~~~~---------~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~G 89 (235)
T cd00958 19 GLEDPEETVKLAAEGGADAVALTKGIAR---------AYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLG 89 (235)
T ss_pred cccCHHHHHHHHHhcCCCEEEeChHHHH---------hcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCC
Confidence 4455555556666678999987643222 11111 245777777632111110223345555688899999
Q ss_pred CcEEEEEcccccc-------hhHHHhh-cCCCCcEEEEEcccCCC----CCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 011136 112 ADYIDVELQVARE-------FNDSIRG-KKPEKCKVIVSSHNYQY----TPSVEDLSNLVARIQASGADIVKFATTALDI 179 (493)
Q Consensus 112 ~dyIDIEl~~~~~-------~~~~l~~-~~~~~~kiI~S~H~f~~----tp~~~el~~~~~~~~~~gaDIvKia~~a~s~ 179 (493)
++.||+.++.... .+.++.. .++.+.++|+--|.... ..+.+++....+.+.+.|||++|+-. +.
T Consensus 90 a~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~-~~-- 166 (235)
T cd00958 90 ADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY-TG-- 166 (235)
T ss_pred CCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC-CC--
Confidence 9999998876432 2333442 34578999996553100 01234444447778889999999942 22
Q ss_pred hHHHHHHHHhccCCCCEEEE
Q 011136 180 TDVARVFQITVHSQVPIIGL 199 (493)
Q Consensus 180 ~D~~~l~~~~~~~~~PlIa~ 199 (493)
|...+.++.+..+.|+++.
T Consensus 167 -~~~~~~~i~~~~~~pvv~~ 185 (235)
T cd00958 167 -DAESFKEVVEGCPVPVVIA 185 (235)
T ss_pred -CHHHHHHHHhcCCCCEEEe
Confidence 3444444555556787655
No 93
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.07 E-value=0.024 Score=57.66 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=37.6
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++.|||.|-||.+++..|.+.|++|+++||+.++++++.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~ 41 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE 41 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999999999999999998876
No 94
>PRK06046 alanine dehydrogenase; Validated
Probab=96.06 E-value=0.016 Score=59.86 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=51.9
Q ss_pred CCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136 381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII 458 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t 458 (493)
.+++.|+|+|+.|+..+.++.. .++ +|.|++|+.++++++++.++...- ..+.+..+.++-. . .+|++.+|
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~l-~-aDiVv~aT 201 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVG-----CDVTVAEDIEEAC-D-CDILVTTT 201 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcC-----ceEEEeCCHHHHh-h-CCEEEEec
Confidence 4689999999999999998875 456 899999999999999988753210 1233333333322 2 57777888
Q ss_pred c
Q 011136 459 H 459 (493)
Q Consensus 459 p 459 (493)
|
T Consensus 202 p 202 (326)
T PRK06046 202 P 202 (326)
T ss_pred C
Confidence 7
No 95
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.04 E-value=0.025 Score=56.70 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=41.7
Q ss_pred CEEEEEecchHHHHHHHHHHhCC----CeEEEEeCChHHHHHHHHHhhhh
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKG----ARVVIANRTYGESLTFLRLMSWL 427 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g----~~i~v~~R~~~~a~~la~~~~~~ 427 (493)
.++.+||+|-||+|++..|.+.| .+|+|.||+.++.+.+++.|+..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~ 51 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVV 51 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCc
Confidence 36889999999999999999999 28999999999999999988765
No 96
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.04 E-value=0.017 Score=57.95 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=52.0
Q ss_pred ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceE
Q 011136 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSV 437 (493)
Q Consensus 378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~ 437 (493)
.+++++|+|+|.||.|..++.+|+..|+ +|+|++.+ ..|++.+++.+...+. .-+|
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP----~~~V 102 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINP----ECRV 102 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCC----CcEE
Confidence 3567899999999999999999999998 99997754 2356666666655442 1133
Q ss_pred EEEeec------ccccCCceEEEEeccc
Q 011136 438 IVIRIL------LFTWHLKFFIAANIIH 459 (493)
Q Consensus 438 ~v~~~l------~~~~~~~~~i~~n~tp 459 (493)
..+.+. ++.+..+++++++++-
T Consensus 103 ~~i~~~i~~e~~~~ll~~~~D~VIdaiD 130 (268)
T PRK15116 103 TVVDDFITPDNVAEYMSAGFSYVIDAID 130 (268)
T ss_pred EEEecccChhhHHHHhcCCCCEEEEcCC
Confidence 333221 1223345778886654
No 97
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.04 E-value=0.015 Score=56.78 Aligned_cols=49 Identities=31% Similarity=0.360 Sum_probs=43.5
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
++++|.++|.|+ ||.|++++..|++.|++|+++.|+.++.+++++.+..
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~ 55 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGT 55 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 467899999998 7899999999999999999999999998888876643
No 98
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.03 E-value=0.042 Score=56.01 Aligned_cols=41 Identities=27% Similarity=0.255 Sum_probs=37.9
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
++.|||+|.+|.+++..|++.|.+|++++|+.++.+++.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~ 43 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD 43 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc
Confidence 68999999999999999999999999999999998888764
No 99
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.03 E-value=0.016 Score=57.49 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=42.8
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++++|.++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 53 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIK 53 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 467899999998 689999999999999999999999999888877664
No 100
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.029 Score=60.07 Aligned_cols=76 Identities=22% Similarity=0.194 Sum_probs=49.2
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY-GESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI 457 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~-~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~ 457 (493)
+++|+++|+|+|++|.+++..|++.|++|++++++. +..++..+++..... ++.. ....+....++++++++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~------~~~~-~~~~~~~~~~~d~vv~~ 75 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGI------ELVL-GEYPEEFLEGVDLVVVS 75 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC------EEEe-CCcchhHhhcCCEEEEC
Confidence 458999999999999999999999999999999975 333333333322111 1111 11112233557778877
Q ss_pred cccC
Q 011136 458 IHLG 461 (493)
Q Consensus 458 tplG 461 (493)
+.+.
T Consensus 76 ~g~~ 79 (450)
T PRK14106 76 PGVP 79 (450)
T ss_pred CCCC
Confidence 7553
No 101
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.00 E-value=0.076 Score=53.79 Aligned_cols=141 Identities=21% Similarity=0.301 Sum_probs=87.2
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT 327 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~ 327 (493)
.-++| +|-+.+.- ..-...++++|++.....++. +++...++.+ .+++..|.-|-+|....+ ...++.+++
T Consensus 43 ii~vg~d~aS~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p 121 (287)
T PRK14176 43 TILVGDDPASKMYV-RLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP 121 (287)
T ss_pred EEEECCCcchHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc
Confidence 44566 34333333 233557899999987776654 3677777777 567899999999975322 111222221
Q ss_pred HHHHhcceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136 328 VAKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK 401 (493)
Q Consensus 328 ~A~~igAvNti~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~ 401 (493)
. +.+-..+.. +-|+++ |. -.--.|++..|+.. +.+++||+|+|+|.|. .|+-++.-|.
T Consensus 122 ~-KDVDGl~~~----N~g~l~~g~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrs~iVGkPla~lL~ 185 (287)
T PRK14176 122 A-KDADGFHPY----NMGKLMIGDEGLVPCTPHGVIRALEEY-----------GVDIEGKNAVIVGHSNVVGKPMAAMLL 185 (287)
T ss_pred c-ccccccChh----hhhhHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCcccHHHHHHHHH
Confidence 0 111111110 012221 11 11256777777652 2678999999999999 9999999999
Q ss_pred hCCCeEEEEeCC
Q 011136 402 AKGARVVIANRT 413 (493)
Q Consensus 402 ~~g~~i~v~~R~ 413 (493)
..|+.|+++...
T Consensus 186 ~~~atVtv~hs~ 197 (287)
T PRK14176 186 NRNATVSVCHVF 197 (287)
T ss_pred HCCCEEEEEecc
Confidence 999999999853
No 102
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.99 E-value=0.04 Score=56.68 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=43.5
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL 428 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~ 428 (493)
++++.|||+|.+|.++++.|...|. +|++++++.++++..+.++....
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~ 55 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV 55 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc
Confidence 5799999999999999999999996 89999999999999988887654
No 103
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.02 Score=58.42 Aligned_cols=49 Identities=33% Similarity=0.411 Sum_probs=43.5
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.++++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++.+.+.
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIR 59 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4577899999997 789999999999999999999999999888877664
No 104
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.88 E-value=0.013 Score=63.58 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=38.9
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
..+.+++++|+|.||+|++++..|.+.|++|++++|+..+..++.+
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~ 56 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIE 56 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHH
Confidence 3467899999999999999999999999999999998766544433
No 105
>PRK06949 short chain dehydrogenase; Provisional
Probab=95.88 E-value=0.024 Score=55.29 Aligned_cols=49 Identities=31% Similarity=0.381 Sum_probs=43.4
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.++++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++.+.+.
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~ 54 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIE 54 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4577899999997 889999999999999999999999999888877654
No 106
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.87 E-value=0.034 Score=57.48 Aligned_cols=49 Identities=29% Similarity=0.349 Sum_probs=42.2
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
..++++++.|||.|-+|++++..|...|++|++.+|+.++..+.++..+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G 61 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADG 61 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCC
Confidence 4567899999999999999999999999999999998777777766544
No 107
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.87 E-value=0.69 Score=45.91 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH---HHHH
Q 011136 32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD---VLRL 106 (493)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~---ll~~ 106 (493)
..+++++. .+.+.|||-|||.-++-. .+.|+ ..++.+++...+|+.+-+|+ .||-|--++++... -++.
T Consensus 8 v~s~~~a~----~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRP--R~gdF~Ys~~E~~~M~~di~~ 81 (248)
T PRK11572 8 CYSMECAL----TAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRP--RGGDFCYSDGEFAAMLEDIAT 81 (248)
T ss_pred ECCHHHHH----HHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEec--CCCCCCCCHHHHHHHHHHHHH
Confidence 45555544 344679999999988643 34443 34666667779999999996 45666666655433 3556
Q ss_pred HHHhCCcEEEE-----EcccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 011136 107 AMELGADYIDV-----ELQVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALDIT 180 (493)
Q Consensus 107 ~l~~~~dyIDI-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~ 180 (493)
+.++|+|.+=+ |-..+.+..++++.. .++.++. +|- |+.+++ ..+-++.+.++|+|=|==..-+.+..
T Consensus 82 ~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~-a~~~~vT--FHRAfD~~~d---~~~al~~l~~lG~~rILTSGg~~~a~ 155 (248)
T PRK11572 82 VRELGFPGLVTGVLDVDGHVDMPRMRKIMAA-AGPLAVT--FHRAFDMCAN---PLNALKQLADLGVARILTSGQQQDAE 155 (248)
T ss_pred HHHcCCCEEEEeeECCCCCcCHHHHHHHHHH-hcCCceE--EechhhccCC---HHHHHHHHHHcCCCEEECCCCCCCHH
Confidence 66778886654 455566677777754 3566664 565 888875 45678888888976555445556667
Q ss_pred HHHHHHHHh
Q 011136 181 DVARVFQIT 189 (493)
Q Consensus 181 D~~~l~~~~ 189 (493)
|.+..++-+
T Consensus 156 ~g~~~L~~l 164 (248)
T PRK11572 156 QGLSLIMEL 164 (248)
T ss_pred HHHHHHHHH
Confidence 766666543
No 108
>PRK05872 short chain dehydrogenase; Provisional
Probab=95.84 E-value=0.021 Score=57.64 Aligned_cols=49 Identities=33% Similarity=0.482 Sum_probs=44.0
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.++++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG 54 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence 3577899999997 889999999999999999999999999988887764
No 109
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.84 E-value=0.049 Score=53.06 Aligned_cols=95 Identities=17% Similarity=0.081 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh----------HHHHHHHH
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY----------GESLTFLR 422 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~----------~~a~~la~ 422 (493)
+.|...+++..+.. .+.+++|++++|.|.|.+|+.++..|.+.|. .|.|.+.+. +..+...+
T Consensus 3 g~Gv~~~~~~~~~~-------~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~ 75 (217)
T cd05211 3 GYGVVVAMKAAMKH-------LGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVA 75 (217)
T ss_pred hhHHHHHHHHHHHH-------cCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHh
Confidence 56777777665432 1256889999999999999999999999998 788888776 44433333
Q ss_pred HhhhhhhcccccceEEEEeecccccCCceEEEEeccccC
Q 011136 423 LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLG 461 (493)
Q Consensus 423 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG 461 (493)
.......+. .+ .+ +-++.|..+.+|++|+++=+
T Consensus 76 ~~~~~~~~~--~~---~~-~~~~l~~~~~DVlipaA~~~ 108 (217)
T cd05211 76 LGGSARVKV--QD---YF-PGEAILGLDVDIFAPCALGN 108 (217)
T ss_pred hCCccccCc--cc---cc-CcccceeccccEEeeccccC
Confidence 322221110 00 11 22345556778999887643
No 110
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.04 Score=55.73 Aligned_cols=96 Identities=15% Similarity=0.031 Sum_probs=61.7
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH-hhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL-MSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL 460 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl 460 (493)
++++|+|.|.+|++++..|...|..+.|++|+..++...+.. ++...- ...+.....-.+.++++=+||+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~---------~~~~~~~~~~~~aD~VivavPi 74 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDE---------LTVAGLAEAAAEADLVIVAVPI 74 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccc---------cccchhhhhcccCCEEEEeccH
Confidence 589999999999999999999999898999988776655543 332210 0011000011223455555666
Q ss_pred CCchhhHhhhhhHHHHhhccceEeeecccc
Q 011136 461 GNHLEWVTAAFNLFFYLTCNSYVVMEKTEI 490 (493)
Q Consensus 461 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (493)
....+.+. .....+-++.+|||-|-+
T Consensus 75 ~~~~~~l~----~l~~~l~~g~iv~Dv~S~ 100 (279)
T COG0287 75 EATEEVLK----ELAPHLKKGAIVTDVGSV 100 (279)
T ss_pred HHHHHHHH----HhcccCCCCCEEEecccc
Confidence 65555553 334456789999997754
No 111
>PLN02256 arogenate dehydrogenase
Probab=95.84 E-value=0.039 Score=56.48 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=36.0
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++.++.|||.|.+|.+++.+|.+.|.+|++++|+.. .+.+..++
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~--~~~a~~~g 78 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY--SDIAAELG 78 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH--HHHHHHcC
Confidence 467899999999999999999999989999999863 24444443
No 112
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.83 E-value=0.099 Score=52.95 Aligned_cols=140 Identities=19% Similarity=0.272 Sum_probs=85.5
Q ss_pred Eeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHh--hhhhhhcHH
Q 011136 257 GIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTV 328 (493)
Q Consensus 257 ~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~ 328 (493)
-++| +|-+++.-- .--..++++|++.....++- +++.+.++.+ .+++..|.-|-.|.-..+- ..++.+++
T Consensus 38 i~vg~d~as~~Yv~-~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p- 115 (285)
T PRK14189 38 ILVGDNPASQVYVR-NKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAP- 115 (285)
T ss_pred EEeCCCchHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCc-
Confidence 4555 343333332 33557899999987666653 4677777777 4578999999999753211 11222211
Q ss_pred HHHhcceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchH-HHHHHHHHHh
Q 011136 329 AKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGA-GKALAYGAKA 402 (493)
Q Consensus 329 A~~igAvNti~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGa-ara~~~~L~~ 402 (493)
.+.+-..+.. +-|+++ |. -.-..|++.-|+.. +.+++||+|+|+|.|+. |+-++.-|..
T Consensus 116 ~KDVDGl~~~----n~g~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~vvViGrs~iVGkPla~lL~~ 180 (285)
T PRK14189 116 EKDVDGFHVA----NAGALMTGQPLFRPCTPYGVMKMLESI-----------GIPLRGAHAVVIGRSNIVGKPMAMLLLQ 180 (285)
T ss_pred ccCcccCChh----hhhHhhCCCCCCcCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHH
Confidence 1111111111 012221 11 11256677766652 26789999999999997 9999999999
Q ss_pred CCCeEEEEeCC
Q 011136 403 KGARVVIANRT 413 (493)
Q Consensus 403 ~g~~i~v~~R~ 413 (493)
.|+.|+++.+.
T Consensus 181 ~~atVt~~hs~ 191 (285)
T PRK14189 181 AGATVTICHSK 191 (285)
T ss_pred CCCEEEEecCC
Confidence 99999887653
No 113
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.83 E-value=0.034 Score=60.15 Aligned_cols=49 Identities=27% Similarity=0.277 Sum_probs=38.6
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY-GESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~-~~a~~la~~~~ 425 (493)
..+++++|+|+|+|++|.+++..|.+.|++|+++++.. +....+.+.+.
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~ 61 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILE 61 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHH
Confidence 45678999999999999999999999999999998543 34444444443
No 114
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.83 E-value=0.024 Score=54.72 Aligned_cols=49 Identities=33% Similarity=0.384 Sum_probs=42.6
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.++++++++|.|+ |+.|+.++..|++.|++|++++|+.++.+++.+..+
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~ 54 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETG 54 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence 3467899999998 789999999999999999999999998888776543
No 115
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.82 E-value=0.024 Score=57.20 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=38.8
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
++|.|||+|-+|++++..|++.|++|++++|+.++.+++.+..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999988876543
No 116
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.80 E-value=0.024 Score=57.32 Aligned_cols=49 Identities=29% Similarity=0.313 Sum_probs=43.4
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
..+.+++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~ 85 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRIT 85 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 4467899999997 889999999999999999999999999888877664
No 117
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.80 E-value=0.25 Score=50.03 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=59.0
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC----------CCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCC
Q 011136 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDG----------LKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQY 93 (493)
Q Consensus 25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~----------l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~ 93 (493)
.+.++|.+.+.++...-++.+.+.|+|+||+-+-. ..+.+. .+.++.+++..++|+.+-++..
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------ 164 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------ 164 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence 36689999999999999988888899999995421 111110 2345566666689998877631
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEEE
Q 011136 94 DGDENERVDVLRLAMELGADYIDV 117 (493)
Q Consensus 94 ~~~~~~~~~ll~~~l~~~~dyIDI 117 (493)
.++-.++.+.+.+.|+|+|++
T Consensus 165 ---~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 165 ---VTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred ---chhHHHHHHHHHHcCCCEEEE
Confidence 124556777788889999877
No 118
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.78 E-value=0.025 Score=56.15 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=43.4
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 55 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIK 55 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3567899999997 889999999999999999999999988888877664
No 119
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.77 E-value=0.051 Score=53.26 Aligned_cols=94 Identities=21% Similarity=0.171 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEeC----------ChHHHHHHHH
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR----------TYGESLTFLR 422 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~R----------~~~~a~~la~ 422 (493)
+.|...+++..+.. ....+++++++|.|.|.+|+.++..|.+.|.+|+ |.+. +.++..++.+
T Consensus 11 g~Gv~~~~~~~~~~-------~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~ 83 (227)
T cd01076 11 GRGVAYATREALKK-------LGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKK 83 (227)
T ss_pred hHHHHHHHHHHHHh-------cCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHH
Confidence 67777777765542 1246789999999999999999999999999766 8777 6666665555
Q ss_pred HhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136 423 LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH 459 (493)
Q Consensus 423 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp 459 (493)
..+... .++....+ +.++-|..+.+|++|+++
T Consensus 84 ~~g~l~----~~~~~~~~-~~~~i~~~~~Dvlip~a~ 115 (227)
T cd01076 84 EHGSVL----GFPGAERI-TNEELLELDCDILIPAAL 115 (227)
T ss_pred hcCCcc----cCCCceec-CCccceeecccEEEecCc
Confidence 433211 01111111 234556677889998873
No 120
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.77 E-value=0.0054 Score=64.50 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=45.9
Q ss_pred EEEEecchHHHHHHHHHHhCC-C-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136 384 FVVIGAGGAGKALAYGAKAKG-A-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH 459 (493)
Q Consensus 384 vlvlGaGGaara~~~~L~~~g-~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp 459 (493)
|+|+|+|.+|++++..|.+.+ . +|+|.+|+.++++++++.+..........|. .=.+++.... .+.++++|+.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~l~~~~-~~~dvVin~~g 76 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDV-NDPESLAELL-RGCDVVINCAG 76 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--T-TTHHHHHHHH-TTSSEEEE-SS
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEec-CCHHHHHHHH-hcCCEEEECCc
Confidence 689999999999999999987 4 8999999999999998765322211111110 0001122222 56789999875
No 121
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.76 E-value=0.023 Score=55.44 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=42.7
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
.+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+..
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~ 55 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQ 55 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh
Confidence 456899999997 7799999999999999999999999888888776643
No 122
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.75 E-value=0.056 Score=55.93 Aligned_cols=45 Identities=33% Similarity=0.479 Sum_probs=39.3
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.|++|+|+|+||.|..++..++..|++|+.+.|+.+|. ++|++++
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~-e~a~~lG 210 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL-ELAKKLG 210 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH-HHHHHhC
Confidence 48899999999999999998888999999999999886 4556655
No 123
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.75 E-value=0.027 Score=57.46 Aligned_cols=93 Identities=14% Similarity=-0.028 Sum_probs=59.5
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII 458 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t 458 (493)
.+++.|||+|.+|.+++.+|.+.|. +|++++|+.++.+.+.+ .+.. ..+..+.++ +..+.++++.+|
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-~g~~---------~~~~~~~~~-~~~~aDvViiav 74 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-LGLG---------DRVTTSAAE-AVKGADLVILCV 74 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-CCCC---------ceecCCHHH-HhcCCCEEEECC
Confidence 3689999999999999999999985 89999999887665432 2210 011122221 224567888888
Q ss_pred ccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136 459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEKT 488 (493)
Q Consensus 459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
|.+...+.+. ......-++.+|+|-+
T Consensus 75 p~~~~~~v~~----~l~~~l~~~~iv~dvg 100 (307)
T PRK07502 75 PVGASGAVAA----EIAPHLKPGAIVTDVG 100 (307)
T ss_pred CHHHHHHHHH----HHHhhCCCCCEEEeCc
Confidence 8766544332 1112223567888754
No 124
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=95.73 E-value=0.076 Score=53.40 Aligned_cols=52 Identities=35% Similarity=0.384 Sum_probs=45.3
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL 428 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~ 428 (493)
..+.||.++|-|+ -|.|++++..|+++|++|+|.+|+.++.++.++.+....
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~ 56 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLG 56 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 4578999999987 679999999999999999999999999988887766543
No 125
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.025 Score=55.42 Aligned_cols=48 Identities=31% Similarity=0.362 Sum_probs=42.9
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++++.+..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~ 53 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIAR 53 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 56899999997 7899999999999999999999999998888877653
No 126
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.025 Score=54.99 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=41.7
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++|.++|.|+ +|.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~ 50 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCS 50 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 46889999998 669999999999999999999999999888877654
No 127
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.70 E-value=0.026 Score=54.63 Aligned_cols=47 Identities=34% Similarity=0.484 Sum_probs=41.1
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++++++|.|+ |+.|++++..|.+.|++|+++.|+.++.+.+...+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL 50 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence 45789999997 789999999999999999999999988887766554
No 128
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.025 Score=55.34 Aligned_cols=47 Identities=30% Similarity=0.363 Sum_probs=41.5
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++++++|.|+ ||.|++++..|++.|++|+++.|+..+.+++.+.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 52 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG 52 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC
Confidence 56899999999 889999999999999999999999888777766553
No 129
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=95.68 E-value=0.067 Score=51.61 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=35.4
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
+++.|+|+|-+|.+++..|...|++|.|.+|+.+++.+.+.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a 42 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAA 42 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHH
Confidence 47899999999999999999999999999887666665554
No 130
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=95.67 E-value=0.027 Score=55.40 Aligned_cols=46 Identities=28% Similarity=0.458 Sum_probs=41.2
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++.+.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF 50 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 46889999997 78999999999999999999999999988887665
No 131
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.027 Score=55.54 Aligned_cols=46 Identities=33% Similarity=0.376 Sum_probs=41.3
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL 50 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 56889999997 88999999999999999999999998888887765
No 132
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.65 E-value=0.026 Score=58.15 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=36.7
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++|.|||+|-||+.++..++..|++|++++++++..+.+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~ 48 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRA 48 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 68999999999999999999999999999999887666544
No 133
>PRK05717 oxidoreductase; Validated
Probab=95.65 E-value=0.03 Score=54.75 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=42.1
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
..++||+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~ 54 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL 54 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc
Confidence 5678999999997 78999999999999999999999988887776654
No 134
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.028 Score=54.86 Aligned_cols=48 Identities=31% Similarity=0.416 Sum_probs=42.3
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++.+.+..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~ 52 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA 52 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 45789999997 7899999999999999999999999998888776643
No 135
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.62 E-value=0.025 Score=58.12 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=42.5
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
.|+.++|.|| ||.|++++..|++.|++|++++|+.++.+++++++..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Confidence 5789999997 7899999999999999999999999999998887653
No 136
>PRK06125 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.03 Score=54.89 Aligned_cols=48 Identities=27% Similarity=0.328 Sum_probs=42.3
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 52 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLR 52 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 356899999998 789999999999999999999999998888776654
No 137
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.61 E-value=0.033 Score=57.28 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=59.0
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+++|++.|||.|-+|++++..|...|++|++++|. .++.+.++..+... .++++-+ ++.++++.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v------------~sl~Eaa-k~ADVV~l 77 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEV------------MSVSEAV-RTAQVVQM 77 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc-chhhHHHHHcCCEE------------CCHHHHH-hcCCEEEE
Confidence 4578999999999999999999999999999999986 44444444333211 1333333 55677887
Q ss_pred ccccCCchhhHhhhhh-HHHHhhccceEee
Q 011136 457 IIHLGNHLEWVTAAFN-LFFYLTCNSYVVM 485 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~-~~~~~~~~~~~~~ 485 (493)
.+|.--+ ..-++ ..+..+-++.+++
T Consensus 78 lLPd~~t----~~V~~~eil~~MK~GaiL~ 103 (335)
T PRK13403 78 LLPDEQQ----AHVYKAEVEENLREGQMLL 103 (335)
T ss_pred eCCChHH----HHHHHHHHHhcCCCCCEEE
Confidence 7776322 22333 2344444455553
No 138
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.032 Score=54.13 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=40.9
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+.+.+.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~ 51 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIV 51 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 56889999998 899999999999999999999999887777766543
No 139
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.60 E-value=0.049 Score=55.41 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=37.1
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
+|.|||.|-||.+++..|.+.|.+|+++||++++.+++.+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~ 41 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE 41 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 5889999999999999999999999999999999988754
No 140
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.59 E-value=0.042 Score=59.55 Aligned_cols=40 Identities=33% Similarity=0.336 Sum_probs=37.7
Q ss_pred EEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
+-|||.|-||.+++..|++.|++|+++||+.++++++.+.
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~ 41 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE 41 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh
Confidence 6789999999999999999999999999999999999875
No 141
>PRK09242 tropinone reductase; Provisional
Probab=95.59 E-value=0.031 Score=54.64 Aligned_cols=50 Identities=26% Similarity=0.234 Sum_probs=43.9
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
+.+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+.+..
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~ 55 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAE 55 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4567899999997 7899999999999999999999999998888776643
No 142
>PRK07574 formate dehydrogenase; Provisional
Probab=95.57 E-value=0.028 Score=59.38 Aligned_cols=96 Identities=11% Similarity=-0.018 Sum_probs=64.8
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.|+++.|||.|.+|++++..|+..|++|..++|+.... ...+.++... ..++++-+ ++.++++.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~-~~~~~~g~~~-----------~~~l~ell-~~aDvV~l 254 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPE-EVEQELGLTY-----------HVSFDSLV-SVCDVVTI 254 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCch-hhHhhcCcee-----------cCCHHHHh-hcCCEEEE
Confidence 45789999999999999999999999999999999986332 2222222111 12344434 56788888
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK 487 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
..|+.-.-..+.. -..|..+-++.++.+-
T Consensus 255 ~lPlt~~T~~li~--~~~l~~mk~ga~lIN~ 283 (385)
T PRK07574 255 HCPLHPETEHLFD--ADVLSRMKRGSYLVNT 283 (385)
T ss_pred cCCCCHHHHHHhC--HHHHhcCCCCcEEEEC
Confidence 8888766555542 2445555566666653
No 143
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.56 E-value=0.047 Score=59.50 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=39.2
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
.++-+||-|-||+.++..|.+.|++|+|+|||.++++++.+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~ 48 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 48 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHh
Confidence 368999999999999999999999999999999999999874
No 144
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.55 E-value=0.028 Score=57.15 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=37.5
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++.|||.|-||.+++..|.+.|++|+++||+.++.+++.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~ 42 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD 42 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence 6899999999999999999999999999999999988765
No 145
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.53 E-value=0.76 Score=46.32 Aligned_cols=210 Identities=14% Similarity=0.070 Sum_probs=122.4
Q ss_pred HHHHHHHHHhhhhcCCCEEEEEecCC-------CCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 011136 35 VDKMVVDMGKANASGADLVEIRLDGL-------KNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLRL 106 (493)
Q Consensus 35 ~~e~~~~~~~~~~~~aD~vElRlD~l-------~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 106 (493)
.++.+.-++.+.+.|+|.+|+=.-.- ...++.+.++.+++. .+.++...+|..+.-|....+.+-..+.++.
T Consensus 20 ~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 20 TEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHH
Confidence 34444445566678999999964320 122334556666643 3578888888765555444455556678888
Q ss_pred HHHhCCcEEEEEccccc-chh-HHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCHhH
Q 011136 107 AMELGADYIDVELQVAR-EFN-DSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTA--LDITD 181 (493)
Q Consensus 107 ~l~~~~dyIDIEl~~~~-~~~-~~l~~~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaDIvKia~~a--~s~~D 181 (493)
+.+.|+++|-|-....+ +.+ +.+..++..+.++..+... +....+.+.+.+..+++.+.|+|.+-++=+. -+|++
T Consensus 100 ~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~ 179 (275)
T cd07937 100 AAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYA 179 (275)
T ss_pred HHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHH
Confidence 99999999888554432 122 2222344556777765543 2222356789999999999999999888444 35788
Q ss_pred HHHHHHHhccC-CCCEEEEecCC--cchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136 182 VARVFQITVHS-QVPIIGLVMGE--RGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (493)
Q Consensus 182 ~~~l~~~~~~~-~~PlIa~~MG~--~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~ 245 (493)
+.++.+.+.+. +.|+-.-+=-. ++...-+..-..|....-+++.+- .-..|+.+.+++...++
T Consensus 180 v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~Gl-G~~aGN~~~E~l~~~L~ 245 (275)
T cd07937 180 AYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPL-SGGTSQPSTESMVAALR 245 (275)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc-cCCcCChhHHHHHHHHH
Confidence 88888776542 44443322111 222222222223433322333321 23478888877665554
No 146
>PRK08703 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.032 Score=53.92 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=42.1
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++++++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIV 51 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHH
Confidence 356899999997 789999999999999999999999998888777654
No 147
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.031 Score=57.74 Aligned_cols=49 Identities=31% Similarity=0.377 Sum_probs=43.4
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
.+++|.+||.|+ ||.|++++..|++.|++|+++.|+.++.+++++.+..
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~ 53 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA 53 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 356899999998 8899999999999999999999999999888876653
No 148
>PRK09186 flagellin modification protein A; Provisional
Probab=95.51 E-value=0.032 Score=54.28 Aligned_cols=46 Identities=26% Similarity=0.321 Sum_probs=41.0
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++++.+.
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~ 49 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLG 49 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHH
Confidence 4789999997 789999999999999999999999999888877653
No 149
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.034 Score=54.22 Aligned_cols=48 Identities=31% Similarity=0.511 Sum_probs=41.8
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 52 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIR 52 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 356899999998 789999999999999999999999988877776554
No 150
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.49 E-value=0.034 Score=54.63 Aligned_cols=49 Identities=27% Similarity=0.236 Sum_probs=42.8
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
++++|.++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+..
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~ 54 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLRE 54 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 467899999998 6799999999999999999999999888887766543
No 151
>PRK06196 oxidoreductase; Provisional
Probab=95.48 E-value=0.033 Score=56.63 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=42.2
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++.+.
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~ 71 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID 71 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh
Confidence 467899999998 789999999999999999999999998888776543
No 152
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.48 E-value=0.16 Score=48.56 Aligned_cols=130 Identities=19% Similarity=0.153 Sum_probs=86.2
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 011136 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDV 103 (493)
Q Consensus 25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l 103 (493)
++||.+-..+.++...-++.+ ..|.|++|+-.-++..+- .+.++.+++.. +.+++++...- +.| .+ .
T Consensus 1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~-------~~--~ 68 (206)
T TIGR03128 1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG-------EY--E 68 (206)
T ss_pred CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch-------HH--H
Confidence 478889999999999999887 889999999533332221 35677777653 56777776542 111 11 3
Q ss_pred HHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136 104 LRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (493)
Q Consensus 104 l~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi 172 (493)
.+.+.+.|+|+|-+-...+...+.++. ..++.+.++++..++. . +..+....+.++|+|++|+
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~----~--t~~~~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINV----K--DKVKRAKELKELGADYIGV 132 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCC----C--ChHHHHHHHHHcCCCEEEE
Confidence 566788899999877665433233333 2345688999876542 1 2345556667789999987
No 153
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.47 E-value=0.028 Score=53.88 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=52.9
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEE
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVI 438 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~ 438 (493)
+++++|+|+|+||.|..++..|+..|+ +|++++.+ ..|++.+++.+...+.. -+++
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~----v~i~ 94 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR----VKVS 94 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC----CEEE
Confidence 557899999999999999999999999 99998643 24677777776665531 1222
Q ss_pred EEee-----cccccCCceEEEEeccc
Q 011136 439 VIRI-----LLFTWHLKFFIAANIIH 459 (493)
Q Consensus 439 v~~~-----l~~~~~~~~~i~~n~tp 459 (493)
.... ..+.| .++++++.++.
T Consensus 95 ~~~~~~~~~~~~~~-~~~dvVi~~~~ 119 (197)
T cd01492 95 VDTDDISEKPEEFF-SQFDVVVATEL 119 (197)
T ss_pred EEecCccccHHHHH-hCCCEEEECCC
Confidence 2221 11234 67888887764
No 154
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.47 E-value=0.022 Score=55.66 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=40.8
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC-------------------ChHHHHHHHHHhhhhh
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR-------------------TYGESLTFLRLMSWLL 428 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R-------------------~~~~a~~la~~~~~~~ 428 (493)
+.+++|+|+|+||.|..++..|+..|+ ++++++. -..|++.+++.+...+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 557899999999999999999999999 9998842 2457777777776655
No 155
>PLN02928 oxidoreductase family protein
Probab=95.46 E-value=0.03 Score=58.41 Aligned_cols=105 Identities=15% Similarity=0.040 Sum_probs=61.0
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.||++.|||.|.+|+.++..|..+|++|+.++|+..+.......+...... ...+...-..++++-+ ++.++++.
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~ell-~~aDiVvl 232 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVD-DLVDEKGGHEDIYEFA-GEADIVVL 232 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccc-ccccccCcccCHHHHH-hhCCEEEE
Confidence 357799999999999999999999999999999999854322110000000000 0000000113454444 56789999
Q ss_pred ccccCCchhhHhhhhhHH-HHhhccceEeee
Q 011136 457 IIHLGNHLEWVTAAFNLF-FYLTCNSYVVME 486 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~-~~~~~~~~~~~~ 486 (493)
++|+.-.-..+. +.. |..+-++.++.+
T Consensus 233 ~lPlt~~T~~li---~~~~l~~Mk~ga~lIN 260 (347)
T PLN02928 233 CCTLTKETAGIV---NDEFLSSMKKGALLVN 260 (347)
T ss_pred CCCCChHhhccc---CHHHHhcCCCCeEEEE
Confidence 999875544443 333 333333555544
No 156
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.46 E-value=0.027 Score=56.84 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=36.5
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++.|||.|-+|.+++..|++.|++|+++||+.++.+.+.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~ 40 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA 40 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence 3789999999999999999999999999999999888764
No 157
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.45 E-value=0.039 Score=56.74 Aligned_cols=42 Identities=31% Similarity=0.258 Sum_probs=38.5
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
.++.|||+|.+|.+++..|.+.|.+|++++|+.++++.+.+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~ 46 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAE 46 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh
Confidence 479999999999999999999999999999999998888753
No 158
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.45 E-value=0.43 Score=46.62 Aligned_cols=133 Identities=19% Similarity=0.209 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHhhhhcCCCEE--EEEecCCCCCCchhHHHHHH---hhCCCcEEEEeccCCCCCCC--CCCHHHHHHHH
Q 011136 32 GESVDKMVVDMGKANASGADLV--EIRLDGLKNFNPRENIKTLI---KESPVPTLFTYRPIWEGGQY--DGDENERVDVL 104 (493)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~aD~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~--~~~~~~~~~ll 104 (493)
.++......+++++.+.|+|.+ .+|.-.+......+.++.++ +...+|+|+.... +|... ..+.++.....
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--~g~~~~~~~~~~~i~~~~ 149 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--RGPAVKNEKDPDLIAYAA 149 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--cCCcccCccCHHHHHHHH
Confidence 4677777778888889999988 77765432111122344444 3468999987654 22221 12333333346
Q ss_pred HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 011136 105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV 170 (493)
Q Consensus 105 ~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIv 170 (493)
+.+.+.|+|||=+-...+.+.++++... ....|+++=.. +..+.++..+.++++.+.|++-+
T Consensus 150 ~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~--~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 150 RIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGP--KKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred HHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCC--CCCCHHHHHHHHHHHHHcCCcEE
Confidence 6788899999999654444566666543 34456665221 22356678889999999999855
No 159
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.44 E-value=0.032 Score=54.85 Aligned_cols=45 Identities=27% Similarity=0.429 Sum_probs=39.9
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~ 48 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA 48 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh
Confidence 45789999997 7899999999999999999999999888887654
No 160
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.43 E-value=0.025 Score=55.34 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=50.4
Q ss_pred CCEEEEEecchHHHHHHHHHHhCC---C-eEEEEeC-ChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKG---A-RVVIANR-TYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA 455 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g---~-~i~v~~R-~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~ 455 (493)
..++.|||+|.+|++++..|...| . +|++++| +.++++++++.++... ..+.++-. .+.++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~DiVi 71 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVST-----------TTDWKQHV-TSVDTIV 71 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE-----------eCChHHHH-hcCCEEE
Confidence 468999999999999999998876 3 3888998 4788888887654211 12221112 3456777
Q ss_pred eccccCCchhhH
Q 011136 456 NIIHLGNHLEWV 467 (493)
Q Consensus 456 n~tplG~~~~~~ 467 (493)
.+||-..+.+.+
T Consensus 72 iavp~~~~~~v~ 83 (245)
T PRK07634 72 LAMPPSAHEELL 83 (245)
T ss_pred EecCHHHHHHHH
Confidence 777766554444
No 161
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.43 E-value=0.036 Score=54.03 Aligned_cols=47 Identities=38% Similarity=0.450 Sum_probs=41.3
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+.+|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID 50 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 35789999997 789999999999999999999999988888877654
No 162
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.43 E-value=0.039 Score=53.89 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=42.9
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR 56 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4577999999998 679999999999999999999999888888777654
No 163
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.038 Score=54.62 Aligned_cols=47 Identities=30% Similarity=0.335 Sum_probs=41.2
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++++++|.|+ ||.|++++..|.+.|++|.++.|+.++.+++.+.+.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 50 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG 50 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc
Confidence 45789999998 889999999999999999999999999888776554
No 164
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.41 E-value=0.044 Score=58.36 Aligned_cols=48 Identities=31% Similarity=0.418 Sum_probs=41.1
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
..+.|++|+|+|+|..|+.++..++..|++|+++++++.|++. |..++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~-A~~~G 245 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQ-AAMEG 245 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHH-HHhcC
Confidence 4567999999999999999999999999999999999888654 44444
No 165
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.40 E-value=0.065 Score=53.74 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=34.5
Q ss_pred EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFL 421 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la 421 (493)
++.|||.|.+|.+++..|.+.|. +|++++|+.++.+.+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~ 42 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL 42 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 58999999999999999999985 7999999988877653
No 166
>PLN02688 pyrroline-5-carboxylate reductase
Probab=95.39 E-value=0.068 Score=53.09 Aligned_cols=40 Identities=30% Similarity=0.358 Sum_probs=35.4
Q ss_pred EEEEEecchHHHHHHHHHHhCCC----eEEEE-eCChHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA----RVVIA-NRTYGESLTFLR 422 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~----~i~v~-~R~~~~a~~la~ 422 (493)
++.+||.|.||.+++..|.+.|+ +|+++ ||+.++++.+.+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~ 46 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS 46 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH
Confidence 58899999999999999999986 89999 999999877654
No 167
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.38 E-value=0.091 Score=53.92 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=37.2
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
++.|||+|.+|.+++..|.+.|.+|++++|+.+.++.+.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~ 42 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK 42 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc
Confidence 58999999999999999999999999999999888877663
No 168
>PRK08328 hypothetical protein; Provisional
Probab=95.38 E-value=0.019 Score=56.32 Aligned_cols=37 Identities=30% Similarity=0.525 Sum_probs=33.0
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChH
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYG 415 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~ 415 (493)
+++++|+|+|+||.|..++..|+..|+ +|++++.+.-
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 557899999999999999999999999 9999986543
No 169
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.37 E-value=0.036 Score=56.06 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=37.1
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
.++.|||.|-+|.+++..|.+.|++|++++|+.++.+++.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~ 43 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA 43 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence 36899999999999999999999999999999998887654
No 170
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.37 E-value=0.05 Score=55.32 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=36.7
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++.+||.|-||.+++..|.+.|.+|+++||+.++++.+.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~ 41 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK 41 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999999999999999888754
No 171
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.35 E-value=0.069 Score=45.99 Aligned_cols=88 Identities=15% Similarity=0.035 Sum_probs=60.1
Q ss_pred EEEEEecchHHHHHHHHHHhCC--Ce-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEecc
Q 011136 383 LFVVIGAGGAGKALAYGAKAKG--AR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANII 458 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g--~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~t 458 (493)
++.|||+|..|+.-..++.... .+ +.|++++.++++..++.++...+ .++++-+. ++.++++-+|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~~~D~V~I~t 70 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVY-----------TDLEELLADEDVDAVIIAT 70 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEE-----------SSHHHHHHHTTESEEEEES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccch-----------hHHHHHHHhhcCCEEEEec
Confidence 5899999999999988888773 35 45999999999999888775532 22221111 2566777778
Q ss_pred ccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136 459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEK 487 (493)
Q Consensus 459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
|-..|.+.+. .+.. ..-.|++||
T Consensus 71 p~~~h~~~~~-----~~l~-~g~~v~~EK 93 (120)
T PF01408_consen 71 PPSSHAEIAK-----KALE-AGKHVLVEK 93 (120)
T ss_dssp SGGGHHHHHH-----HHHH-TTSEEEEES
T ss_pred CCcchHHHHH-----HHHH-cCCEEEEEc
Confidence 7777766654 2222 333677776
No 172
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=95.34 E-value=0.045 Score=49.57 Aligned_cols=45 Identities=27% Similarity=0.457 Sum_probs=39.2
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCC-eEEEEeCC--hHHHHHHHHHhhh
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRT--YGESLTFLRLMSW 426 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~-~i~v~~R~--~~~a~~la~~~~~ 426 (493)
|.++|.|+ ||.|++++..|.+.|. .|+++.|+ .++.+++.+.+..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~ 49 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKA 49 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccc
Confidence 57899986 8899999999999987 99999999 8888888777763
No 173
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.34 E-value=0.062 Score=57.98 Aligned_cols=43 Identities=37% Similarity=0.427 Sum_probs=39.2
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT 419 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~ 419 (493)
..+.||+++|+|.|.+|++++..|...|++|+++++++.++..
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~ 292 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQ 292 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHH
Confidence 5688999999999999999999999999999999999877643
No 174
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.31 E-value=0.044 Score=53.99 Aligned_cols=48 Identities=33% Similarity=0.386 Sum_probs=41.9
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++++++||.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+.+.
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~ 55 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIR 55 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 467899999998 569999999999999999999999988888877654
No 175
>PRK08589 short chain dehydrogenase; Validated
Probab=95.31 E-value=0.043 Score=54.51 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=40.6
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++|++||.|+ ||.|++++..|++.|++|++++|+ ++.+++++.+.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~ 50 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIK 50 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHH
Confidence 56899999998 889999999999999999999999 77777777664
No 176
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.30 E-value=0.08 Score=54.03 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=40.8
Q ss_pred EEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhh
Q 011136 384 FVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLL 429 (493)
Q Consensus 384 vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~ 429 (493)
+.|||+|++|.++++.|+..|. +|++++++.++++.++.++.....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~ 48 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASA 48 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcc
Confidence 4689999999999999999994 899999999999999988876653
No 177
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.30 E-value=0.052 Score=55.45 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=40.7
Q ss_pred CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhhh
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~~ 426 (493)
.+++.|+|+|.-|+.-+.++... .. +|.|+||+.++++++++.+..
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~ 164 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSK 164 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHH
Confidence 57899999999999988888764 46 999999999999999988774
No 178
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.30 E-value=0.053 Score=55.76 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=40.0
Q ss_pred CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhhh
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~~ 426 (493)
.+++.|+|+|..|+.-+.++... .. +|+|+||+.++++++++.+..
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~ 175 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA 175 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh
Confidence 57899999999999999888764 35 999999999999999987653
No 179
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.29 E-value=0.06 Score=52.20 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=58.0
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY-GESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA 455 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~-~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~ 455 (493)
.+++||+|||+|+|.+|.-=+..|.+.|++|+|++-+. +.-..+++.....|.. ...+..+-.+..+++
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~----------~~~~~~~~~~~~lvi 77 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE----------REFDAEDLDDAFLVI 77 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh----------cccChhhhcCceEEE
Confidence 67889999999999999999999999999999999887 5555555554433322 111111112244444
Q ss_pred eccccCCchhhHhhhhhHHHHhhccc
Q 011136 456 NIIHLGNHLEWVTAAFNLFFYLTCNS 481 (493)
Q Consensus 456 n~tplG~~~~~~~~~~~~~~~~~~~~ 481 (493)
=||+ -...|..++..|+.
T Consensus 78 aAt~--------d~~ln~~i~~~a~~ 95 (210)
T COG1648 78 AATD--------DEELNERIAKAARE 95 (210)
T ss_pred EeCC--------CHHHHHHHHHHHHH
Confidence 3332 12457778888776
No 180
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.27 E-value=0.047 Score=52.78 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=41.0
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+.+.+.+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~ 50 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG 50 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 45789999998 999999999999999999999999988777766553
No 181
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.26 E-value=0.14 Score=51.77 Aligned_cols=121 Identities=20% Similarity=0.258 Sum_probs=79.6
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec-----
Q 011136 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ----- 342 (493)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~----- 342 (493)
...++++|++.....++- +++.+.++.+ .+++..|.-|-+|.... +|+ -+.+.+++--.--+
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~----i~~----~~i~~~I~p~KDVDGl~~~ 126 (284)
T PRK14177 55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQ----IDE----RAAFDRIALEKDVDGVTTL 126 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH----HHHHhccCcccccccCChh
Confidence 567899999988766643 3677777777 45889999999997532 221 11222222221110
Q ss_pred cCCeE-EEE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeC
Q 011136 343 SDGKL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (493)
Q Consensus 343 ~~g~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R 412 (493)
+-|++ .|. -.--.|++.-|+.. +.+++||+|+|+|-+. .|+-++.-|.+.|+.|+++..
T Consensus 127 n~g~l~~g~~~~~PcTp~avi~ll~~y-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs 191 (284)
T PRK14177 127 SFGKLSMGVETYLPCTPYGMVLLLKEY-----------GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHS 191 (284)
T ss_pred hHHHHHcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 01222 111 11256777777653 2678999999999988 999999999999999999874
No 182
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.25 E-value=0.27 Score=49.75 Aligned_cols=137 Identities=16% Similarity=0.234 Sum_probs=86.1
Q ss_pred Eeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHH
Q 011136 257 GIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330 (493)
Q Consensus 257 ~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~ 330 (493)
-++| +|-+++.--.. -..++++|++.....++. +++.+.++.+ .+++..|.-|-+|....+ ++ -+
T Consensus 37 I~vg~d~as~~Yv~~k-~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i----~~----~~ 107 (282)
T PRK14180 37 IIVGNDPASKTYVASK-EKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHI----NK----NN 107 (282)
T ss_pred EEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCC----CH----HH
Confidence 3445 44444433223 456889999987766654 3677777777 567899999999975322 21 12
Q ss_pred HhcceeeEEEec-----cCCeE-EEE-----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHH
Q 011136 331 SIGAVNCIIRRQ-----SDGKL-FGY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAY 398 (493)
Q Consensus 331 ~igAvNti~~~~-----~~g~l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~ 398 (493)
.+.+++...--+ .-|++ .|. -.-..|++.-|+.. +.+++||+++|+|.+. .|+-++.
T Consensus 108 i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y-----------~i~l~Gk~vvViGrS~~VGkPla~ 176 (282)
T PRK14180 108 VIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREY-----------GIKTEGAYAVVVGASNVVGKPVSQ 176 (282)
T ss_pred HHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHH
Confidence 222333222110 01222 221 11256777776653 2678999999999988 9999999
Q ss_pred HHHhCCCeEEEEeCC
Q 011136 399 GAKAKGARVVIANRT 413 (493)
Q Consensus 399 ~L~~~g~~i~v~~R~ 413 (493)
-|.+.|+.|+++.+.
T Consensus 177 lL~~~~ATVt~chs~ 191 (282)
T PRK14180 177 LLLNAKATVTTCHRF 191 (282)
T ss_pred HHHHCCCEEEEEcCC
Confidence 999999999998753
No 183
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.23 E-value=0.048 Score=53.17 Aligned_cols=48 Identities=33% Similarity=0.374 Sum_probs=42.5
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
+++|++||.|+ |+.|++++..|++.|++|.++.|+.++.+++.+.+..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~ 53 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK 53 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh
Confidence 56889999998 8899999999999999999999999888888776643
No 184
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.23 E-value=0.027 Score=57.89 Aligned_cols=93 Identities=10% Similarity=-0.035 Sum_probs=61.6
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.|+++.|+|.|.+|+.++..|...|++|+.++|+.++........ -..++++-+ ++.++++.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~--------------~~~~l~e~l-~~aDvvv~ 196 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFA--------------GREELSAFL-SQTRVLIN 196 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeec--------------ccccHHHHH-hcCCEEEE
Confidence 356789999999999999999999999999999999765432111100 012333333 55678888
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVME 486 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
..|+.-.-..+.. -..|..+-++.++++
T Consensus 197 ~lPlt~~T~~li~--~~~l~~mk~ga~lIN 224 (312)
T PRK15469 197 LLPNTPETVGIIN--QQLLEQLPDGAYLLN 224 (312)
T ss_pred CCCCCHHHHHHhH--HHHHhcCCCCcEEEE
Confidence 8887766555542 234555445666655
No 185
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.23 E-value=0.045 Score=53.55 Aligned_cols=46 Identities=37% Similarity=0.418 Sum_probs=41.0
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+.+|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~ 50 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI 50 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 45789999997 88999999999999999999999999888887654
No 186
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.22 E-value=0.28 Score=46.62 Aligned_cols=121 Identities=21% Similarity=0.175 Sum_probs=68.5
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (493)
Q Consensus 26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (493)
++.-+...+.++....++.+.+.|+.++|+|..-.. ..+.++.+++.. |.+ .. .+|.. ... ++ ++
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~---~~e~~~~~~~~~--~~~-~~----g~gtv-l~~-d~---~~ 78 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ---PAELISQLREKL--PEC-II----GTGTI-LTL-ED---LE 78 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC---HHHHHHHHHHhC--CCc-EE----eEEEE-EcH-HH---HH
Confidence 334589999999999999999999999999986432 233444444322 321 01 11221 121 33 44
Q ss_pred HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 011136 106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA 176 (493)
Q Consensus 106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a 176 (493)
.+++.|+++|=+=- .+++..+ .... ++.-.+++ .| ||+ .+.++.+.|||++|+ +++
T Consensus 79 ~A~~~gAdgv~~p~-~~~~~~~-~~~~-~~~~~i~G-~~----t~~------e~~~A~~~Gadyv~~-Fpt 134 (187)
T PRK07455 79 EAIAAGAQFCFTPH-VDPELIE-AAVA-QDIPIIPG-AL----TPT------EIVTAWQAGASCVKV-FPV 134 (187)
T ss_pred HHHHcCCCEEECCC-CCHHHHH-HHHH-cCCCEEcC-cC----CHH------HHHHHHHCCCCEEEE-CcC
Confidence 67788999982211 1122221 1111 23334566 55 332 345566799999999 443
No 187
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.21 E-value=0.37 Score=45.71 Aligned_cols=118 Identities=22% Similarity=0.248 Sum_probs=68.5
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (493)
Q Consensus 26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (493)
++.-+...+.++...-++.+.+.|++++|+|..-- +..+.++.+++..+- +.+.. |.. ...+ -++
T Consensus 6 ~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~---~~~~~i~~l~~~~~~-~~iGa------g~v--~~~~---~~~ 70 (190)
T cd00452 6 LVAVLRGDDAEDALALAEALIEGGIRAIEITLRTP---GALEAIRALRKEFPE-ALIGA------GTV--LTPE---QAD 70 (190)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCC-CEEEE------EeC--CCHH---HHH
Confidence 33458899999999999999999999999997632 223456666554431 22211 211 1112 234
Q ss_pred HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136 106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (493)
Q Consensus 106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi 172 (493)
.++..|+++|=.- ..+.+..+ ..+..+.++|.-.. | . +...++.+.|||++|+
T Consensus 71 ~a~~~Ga~~i~~p-~~~~~~~~---~~~~~~~~~i~gv~----t--~----~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 71 AAIAAGAQFIVSP-GLDPEVVK---AANRAGIPLLPGVA----T--P----TEIMQALELGADIVKL 123 (190)
T ss_pred HHHHcCCCEEEcC-CCCHHHHH---HHHHcCCcEECCcC----C--H----HHHHHHHHCCCCEEEE
Confidence 6677889988321 11222222 22234566666432 2 2 2345556799999998
No 188
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.20 E-value=0.043 Score=55.50 Aligned_cols=48 Identities=33% Similarity=0.403 Sum_probs=41.7
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++++|+++|.|+ ||.|++++..|++.|++|+++.|+.+++++..+.+.
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~ 61 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARIT 61 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 467899999997 889999999999999999999999988877665543
No 189
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.19 E-value=0.22 Score=50.73 Aligned_cols=141 Identities=20% Similarity=0.257 Sum_probs=86.5
Q ss_pred EEeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136 256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (493)
Q Consensus 256 ~~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 329 (493)
.-++|+ |-+++.- ..-...++++|++.....++. +++.+.++.+ .+++..|+-|-.|... ++|+ .
T Consensus 36 ii~vg~d~as~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~----~id~---~- 106 (295)
T PRK14174 36 VIIVGEDPASQVYV-RNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK----QIDE---F- 106 (295)
T ss_pred EEEeCCChHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-
Confidence 445663 3333333 233567899999988777764 3677777777 5678999999999752 2222 1
Q ss_pred HHhcceeeEEEec-----cCCeEE-EE--e----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHH
Q 011136 330 KSIGAVNCIIRRQ-----SDGKLF-GY--N----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKAL 396 (493)
Q Consensus 330 ~~igAvNti~~~~-----~~g~l~-G~--N----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~ 396 (493)
+.+.+++.-.--+ .-|+++ |+ + .-..|++.-|+.. +.+++||+|+|+|.+. .|+-+
T Consensus 107 ~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y-----------~i~l~Gk~vvViGrS~iVG~Pl 175 (295)
T PRK14174 107 AVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRY-----------NIETKGKHCVVVGRSNIVGKPM 175 (295)
T ss_pred HHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHH
Confidence 1122222221110 012222 21 1 2245666666542 2678999999999988 89999
Q ss_pred HHHHHh----CCCeEEEEeCChHH
Q 011136 397 AYGAKA----KGARVVIANRTYGE 416 (493)
Q Consensus 397 ~~~L~~----~g~~i~v~~R~~~~ 416 (493)
+.-|.+ .|+.|++...+...
T Consensus 176 a~lL~~~~~~~~atVt~~hs~t~~ 199 (295)
T PRK14174 176 ANLMLQKLKESNCTVTICHSATKD 199 (295)
T ss_pred HHHHHhccccCCCEEEEEeCCchh
Confidence 988877 57788888765433
No 190
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.19 E-value=0.025 Score=54.37 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=33.1
Q ss_pred ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (493)
Q Consensus 378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~ 413 (493)
.++.++|+|+|+||+|..++..|+..|+ +|++++++
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3567899999999999999999999999 89999887
No 191
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.18 E-value=0.039 Score=55.03 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=35.4
Q ss_pred cCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136 379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLT 419 (493)
Q Consensus 379 l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~ 419 (493)
+++|.+||.|++ |.|++++.+|++.|++|+++.|+.+..+.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~ 48 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR 48 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH
Confidence 568999999997 89999999999999999999998644433
No 192
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.16 E-value=0.064 Score=54.78 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=36.4
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++|.|||+|-+|.+++..|++.|++|++++|+.++.+...+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~ 43 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPA 43 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHH
Confidence 46999999999999999999999999999999887776543
No 193
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.16 E-value=0.05 Score=58.19 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=37.3
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++|+++|+|.|++|++++..|++.|++|++.+++........+.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l 48 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQEL 48 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHH
Confidence 4588999999999999999999999999999998764443333333
No 194
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.15 E-value=0.048 Score=53.54 Aligned_cols=48 Identities=38% Similarity=0.406 Sum_probs=40.8
Q ss_pred ccCCCEEEEEec-c-hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-G-GAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-G-Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|+++|.|+ | |.|++++..|++.|++|++.+|+.++.++..+.+.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELA 63 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 356899999997 6 89999999999999999999999888777665543
No 195
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=95.14 E-value=0.052 Score=53.48 Aligned_cols=49 Identities=27% Similarity=0.246 Sum_probs=42.6
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.++++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 55 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYR 55 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3567899999998 679999999999999999999999988888776654
No 196
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.14 E-value=0.4 Score=48.41 Aligned_cols=137 Identities=21% Similarity=0.232 Sum_probs=85.3
Q ss_pred EeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHH
Q 011136 257 GIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330 (493)
Q Consensus 257 ~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~ 330 (493)
-++|+ |-+++.-- .-...++++|++.....++- +++.+.++.+ .+++..|.-|-+|.... +|+ -+
T Consensus 38 i~vg~d~as~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~----~~~----~~ 108 (278)
T PRK14172 38 ILVGNDGGSIYYMN-NQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKH----LDE----KK 108 (278)
T ss_pred EEeCCCHHHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH----HH
Confidence 35663 33333222 22467899999988777663 3577777777 46789999999997532 221 12
Q ss_pred HhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHH
Q 011136 331 SIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYG 399 (493)
Q Consensus 331 ~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~ 399 (493)
.+.+++.-.--+ +-|+++ |. -.--.|++.-|+.. +.+++||+|+|+|-+. .|+-++.-
T Consensus 109 i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~~VGkPla~l 177 (278)
T PRK14172 109 ITNKIDANKDIDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSL-----------NIDIEGKEVVVIGRSNIVGKPVAQL 177 (278)
T ss_pred HHhccCcccccCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHH
Confidence 223333322110 012211 11 11246666666652 2678999999999988 99999999
Q ss_pred HHhCCCeEEEEeCC
Q 011136 400 AKAKGARVVIANRT 413 (493)
Q Consensus 400 L~~~g~~i~v~~R~ 413 (493)
|.+.|+.|+++.+.
T Consensus 178 L~~~~AtVt~chs~ 191 (278)
T PRK14172 178 LLNENATVTICHSK 191 (278)
T ss_pred HHHCCCEEEEeCCC
Confidence 99999999999743
No 197
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.13 E-value=0.057 Score=52.45 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=42.9
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
..+++|+++|.|+ |+.|.+++..|++.|++|++++|+.++.+++.+++..
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEA 58 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 3467899999987 6799999999999999999999999888887776543
No 198
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.12 E-value=0.056 Score=52.62 Aligned_cols=48 Identities=29% Similarity=0.452 Sum_probs=42.4
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~ 53 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIV 53 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 467899999997 779999999999999999999999988888877664
No 199
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.054 Score=52.09 Aligned_cols=46 Identities=28% Similarity=0.336 Sum_probs=40.3
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++++|.|+ |+.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELN 51 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHh
Confidence 4689999997 779999999999999999999999988888776654
No 200
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.08 E-value=0.022 Score=66.91 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=60.8
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCC-Ce-------------EEEEeCChHHHHHHHHHhhhhhhcccccceEEE-E---e
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKG-AR-------------VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIV-I---R 441 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g-~~-------------i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v-~---~ 441 (493)
+.|+|+|||||.+|+.++..|++.. ++ |+|++++.++++++++.+.... .+.+ . +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~-------~v~lDv~D~e 640 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE-------AVQLDVSDSE 640 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCc-------eEEeecCCHH
Confidence 4679999999999999999998764 24 9999999999999998763210 1111 1 1
Q ss_pred ecccccCCceEEEEeccccCCchhhHhhhhh
Q 011136 442 ILLFTWHLKFFIAANIIHLGNHLEWVTAAFN 472 (493)
Q Consensus 442 ~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~ 472 (493)
++.... .+.+++++++|-..|.+...+...
T Consensus 641 ~L~~~v-~~~DaVIsalP~~~H~~VAkaAie 670 (1042)
T PLN02819 641 SLLKYV-SQVDVVISLLPASCHAVVAKACIE 670 (1042)
T ss_pred HHHHhh-cCCCEEEECCCchhhHHHHHHHHH
Confidence 222212 347899999999888777665443
No 201
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.07 E-value=0.18 Score=51.05 Aligned_cols=139 Identities=19% Similarity=0.312 Sum_probs=84.7
Q ss_pred Eeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcHH
Q 011136 257 GIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTV 328 (493)
Q Consensus 257 ~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~ 328 (493)
-++| +|-+.+.- ..-...++++|++.....++- +++.+.++.+ .++...|+-|-+|....+ ...++.+++
T Consensus 37 I~vg~d~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p- 114 (285)
T PRK14191 37 ILVGKDPASQTYV-NMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDP- 114 (285)
T ss_pred EEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCc-
Confidence 3456 34333333 233557889999987666653 3677777777 467899999999975211 111222221
Q ss_pred HHHhcceeeEEEeccCCeEE-EEe----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecc-hHHHHHHHHHHh
Q 011136 329 AKSIGAVNCIIRRQSDGKLF-GYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKA 402 (493)
Q Consensus 329 A~~igAvNti~~~~~~g~l~-G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaG-Gaara~~~~L~~ 402 (493)
.+.+-..+.. +-|+++ |.+ .-..|++.-|+.. +.+++||+|+|+|.| -.|+-++.-|.+
T Consensus 115 ~KDVDGl~~~----n~g~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~ 179 (285)
T PRK14191 115 NKDVDGFHPL----NIGKLCSQLDGFVPATPMGVMRLLKHY-----------HIEIKGKDVVIIGASNIVGKPLAMLMLN 179 (285)
T ss_pred cccccccChh----hHHHHhcCCCCCCCCcHHHHHHHHHHh-----------CCCCCCCEEEEECCCchhHHHHHHHHHH
Confidence 1111111111 012221 111 2256666666642 267899999999999 699999999999
Q ss_pred CCCeEEEEeC
Q 011136 403 KGARVVIANR 412 (493)
Q Consensus 403 ~g~~i~v~~R 412 (493)
.|+.|+++..
T Consensus 180 ~gAtVtv~hs 189 (285)
T PRK14191 180 AGASVSVCHI 189 (285)
T ss_pred CCCEEEEEeC
Confidence 9999988764
No 202
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.06 E-value=0.057 Score=56.27 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=40.0
Q ss_pred CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhhh
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~~ 426 (493)
-+++.|||+|.-|+.-+.++... .. +|+|+||+.++++++++.+..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~ 176 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG 176 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh
Confidence 46899999999999988877654 45 999999999999999998764
No 203
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.05 E-value=0.054 Score=54.85 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=38.1
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
++|.|||+|-||+.++..++..|++|++++++++..+...+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i 48 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRI 48 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999887754443
No 204
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.04 E-value=0.097 Score=52.71 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=36.1
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++.|+|+|.+|..++..|++.|++|+++.|+.++.+.+.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH
Confidence 5899999999999999999999999999998888777654
No 205
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.03 E-value=0.13 Score=52.76 Aligned_cols=84 Identities=14% Similarity=-0.023 Sum_probs=57.2
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH 459 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp 459 (493)
.+|.|||+|.+|.++++.|...|. +|++++++.++++..+.++.....- .....++.-.+.++ . .+.+|++-+..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~-~~~~~v~~~~dy~~-~-~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF-LKNPKIEADKDYSV-T-ANSKVVIVTAG 80 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc-CCCCEEEECCCHHH-h-CCCCEEEECCC
Confidence 489999999999999999998885 8999999999998888887765511 11124443233322 2 55666665333
Q ss_pred c----CCchhhHh
Q 011136 460 L----GNHLEWVT 468 (493)
Q Consensus 460 l----G~~~~~~~ 468 (493)
. ||+...+.
T Consensus 81 ~~~k~g~~R~dll 93 (312)
T cd05293 81 ARQNEGESRLDLV 93 (312)
T ss_pred CCCCCCCCHHHHH
Confidence 2 56654443
No 206
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.02 E-value=0.059 Score=55.62 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=42.6
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~ 53 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR 53 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 456889999998 889999999999999999999999998888877664
No 207
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.02 E-value=0.056 Score=51.69 Aligned_cols=46 Identities=35% Similarity=0.452 Sum_probs=39.3
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++|++||.|+ |+.|++++..|.+.|++|++++|+.++..+..+.+
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGV 51 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHH
Confidence 56899999998 77999999999999999999999988766655443
No 208
>PRK07576 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.062 Score=53.11 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=41.4
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|+++|.|+ ||.|++++..|+..|++|++++|+.++.+++.+.+.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQ 54 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 356899999998 789999999999999999999999888777765554
No 209
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.01 E-value=0.27 Score=49.83 Aligned_cols=139 Identities=19% Similarity=0.283 Sum_probs=86.4
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 329 (493)
.-++| +|-+++.--.. ..+++++|++.....++. +++.+.++.+ .++...|.-|-+|.-.. +|+ -
T Consensus 36 ii~vg~d~as~~Yv~~k-~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~----id~----~ 106 (286)
T PRK14184 36 VILVGEDPASQVYVRNK-ERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKG----LDS----Q 106 (286)
T ss_pred EEEeCCChhHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCC----CCH----H
Confidence 34556 44444433333 456889999987766653 4677777777 56789999999996432 222 1
Q ss_pred HHhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHH
Q 011136 330 KSIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAY 398 (493)
Q Consensus 330 ~~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~ 398 (493)
+.+.+++.-.--+ +-|+++ |. -.--.|++.-|+.. +.+++||+++|+|-+. .|+-++.
T Consensus 107 ~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~iVG~Pla~ 175 (286)
T PRK14184 107 RCLELIDPAKDVDGFHPENMGRLALGLPGFRPCTPAGVMTLLERY-----------GLSPAGKKAVVVGRSNIVGKPLAL 175 (286)
T ss_pred HHHhccCcccCcccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHH
Confidence 2233333322110 002221 11 11246777776653 2678999999999988 9999999
Q ss_pred HHHh----CCCeEEEEeCCh
Q 011136 399 GAKA----KGARVVIANRTY 414 (493)
Q Consensus 399 ~L~~----~g~~i~v~~R~~ 414 (493)
-|.+ .++.|+++..+.
T Consensus 176 lL~~~~~~~~AtVt~~hs~t 195 (286)
T PRK14184 176 MLGAPGKFANATVTVCHSRT 195 (286)
T ss_pred HHhCCcccCCCEEEEEeCCc
Confidence 9988 778888887543
No 210
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.01 E-value=0.063 Score=51.65 Aligned_cols=47 Identities=36% Similarity=0.489 Sum_probs=40.5
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++++++|.|+ |+.|.+++..|.+.|++|+++.|+.++.+.+.+.+.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLS 50 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 45789999998 669999999999999999999999988877765543
No 211
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.062 Score=51.91 Aligned_cols=47 Identities=32% Similarity=0.385 Sum_probs=41.5
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++++++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+.+.+.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 52 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE 52 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 56899999997 889999999999999999999999998888777654
No 212
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.01 E-value=0.1 Score=54.08 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=36.9
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGES 417 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a 417 (493)
..+.|+++.|||.|.+|++++..|...|++|+.++|+.+..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~ 182 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKD 182 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHh
Confidence 45789999999999999999999999999999999987653
No 213
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.056 Score=52.75 Aligned_cols=45 Identities=31% Similarity=0.379 Sum_probs=39.5
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++++.+.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~ 46 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIE 46 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 478999988 669999999999999999999999988888876654
No 214
>PRK06194 hypothetical protein; Provisional
Probab=95.00 E-value=0.06 Score=53.54 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=40.8
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++++++||.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELR 51 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH
Confidence 45789999997 789999999999999999999999888877776654
No 215
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.00 E-value=0.054 Score=54.78 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=37.4
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++|.|||+|-+|.+++..|+..|.+|++++|+.++.+.+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 45 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLA 45 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 67999999999999999999999999999999988877554
No 216
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.99 E-value=0.83 Score=43.49 Aligned_cols=108 Identities=26% Similarity=0.324 Sum_probs=62.7
Q ss_pred HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHH---HhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011136 36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTL---IKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA 112 (493)
Q Consensus 36 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l---~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~ 112 (493)
++....++.+.+.|+|+|++|.-.+...+..+.++.+ .+..+.|++.+ +.++.+.+.|+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ga 82 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN------------------DRVDLALAVGA 82 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHcCC
Confidence 4466677777788999999997543311111222222 23346777753 12456777899
Q ss_pred cEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 011136 113 DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA 173 (493)
Q Consensus 113 dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia 173 (493)
++|-+...... ...+...+..+.++-+|.| | .++ ..++...|+|++++-
T Consensus 83 d~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~----t--~~e----~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 83 DGVHLGQDDLP--VADARALLGPDAIIGLSTH----T--LEE----AAAALAAGADYVGVG 131 (212)
T ss_pred CEEecCcccCC--HHHHHHHcCCCCEEEEeCC----C--HHH----HHHHhHcCCCEEEEC
Confidence 99877543221 1222222345667788877 2 223 344557899999973
No 217
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.99 E-value=0.061 Score=51.96 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=40.3
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++|+++|.|+ ||.|++++..|.+.|.+|++++|+.++.+.+.+.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 51 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR 51 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3678999997 889999999999999999999999988888776654
No 218
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.99 E-value=0.14 Score=50.91 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=38.6
Q ss_pred CEEEEEecchHHHHHHHHHHhCC---CeEEEEeCChHHHHHHHHHhh
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKG---ARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g---~~i~v~~R~~~~a~~la~~~~ 425 (493)
.++.|||+|.+|.+++..|.+.| .+|++++|+.++++.+.+.++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g 49 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYG 49 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcC
Confidence 36899999999999999999988 589999999999888877553
No 219
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.98 E-value=0.34 Score=49.09 Aligned_cols=124 Identities=15% Similarity=0.281 Sum_probs=78.5
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHh--hhhhhhcHHHHHhcceeeEEEeccCC
Q 011136 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG 345 (493)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igAvNti~~~~~~g 345 (493)
...++++|++.....++- +++.+.++.+ .+++..|.-|-+|....+- ..++.+++ .+.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p-~KDVDGl~~~n----~g 128 (284)
T PRK14190 54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISP-EKDVDGFHPIN----VG 128 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccCHhh----HH
Confidence 567889999987766654 3677777777 5678999999999753211 11222221 11111111110 01
Q ss_pred eEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeC
Q 011136 346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (493)
Q Consensus 346 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R 412 (493)
+++ |. -.--.|++.-|+.. +.+++||+|+|+|.+. .|+-++.-|...|+.|+++..
T Consensus 129 ~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs 190 (284)
T PRK14190 129 RMMLGQDTFLPCTPHGILELLKEY-----------NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS 190 (284)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC
Confidence 111 11 11245666666542 2678999999999988 999999999999999998864
No 220
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.96 E-value=0.059 Score=52.24 Aligned_cols=47 Identities=36% Similarity=0.492 Sum_probs=40.7
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 50 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA 50 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh
Confidence 46889999998 789999999999999999999999888877766553
No 221
>PLN03139 formate dehydrogenase; Provisional
Probab=94.95 E-value=0.058 Score=57.02 Aligned_cols=96 Identities=14% Similarity=0.008 Sum_probs=64.3
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.||++.|||.|.+|+.++..|...|++|..++|+....+. .+..+.. ...++++-+ ++.++++.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~-~~~~g~~-----------~~~~l~ell-~~sDvV~l 261 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPEL-EKETGAK-----------FEEDLDAML-PKCDVVVI 261 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhh-HhhcCce-----------ecCCHHHHH-hhCCEEEE
Confidence 4688999999999999999999999999999999998543322 2222111 112344333 55678888
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK 487 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
..|+.-.-..+.. -..|..+-++.++++-
T Consensus 262 ~lPlt~~T~~li~--~~~l~~mk~ga~lIN~ 290 (386)
T PLN03139 262 NTPLTEKTRGMFN--KERIAKMKKGVLIVNN 290 (386)
T ss_pred eCCCCHHHHHHhC--HHHHhhCCCCeEEEEC
Confidence 8886665555542 2455565667777664
No 222
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=94.95 E-value=0.055 Score=54.93 Aligned_cols=84 Identities=27% Similarity=0.216 Sum_probs=59.0
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEE-----------eeccccc-
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVI-----------RILLFTW- 447 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~-----------~~l~~~~- 447 (493)
|+-++|-|| .|.||+-+..|++.|.+|++++||++|.+++++++....-- .|+++ +.+.+..
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~v-----ev~~i~~Dft~~~~~ye~i~~~l~ 123 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKV-----EVRIIAIDFTKGDEVYEKLLEKLA 123 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCc-----EEEEEEEecCCCchhHHHHHHHhc
Confidence 467889998 67999999999999999999999999999999987755520 11111 1111000
Q ss_pred CCceEEEEeccccCC-chhhHhh
Q 011136 448 HLKFFIAANIIHLGN-HLEWVTA 469 (493)
Q Consensus 448 ~~~~~i~~n~tplG~-~~~~~~~ 469 (493)
--+.-|++|.....- +|+.+..
T Consensus 124 ~~~VgILVNNvG~~~~~P~~f~~ 146 (312)
T KOG1014|consen 124 GLDVGILVNNVGMSYDYPESFLK 146 (312)
T ss_pred CCceEEEEecccccCCCcHHHHh
Confidence 124578999887776 4666543
No 223
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.94 E-value=0.06 Score=52.73 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=39.3
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|++||.|+ ||.|++++..|++.|++|+++.|+ ++.+++.+.+.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~ 59 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIE 59 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHH
Confidence 467899999998 679999999999999999999998 56666655543
No 224
>PRK05876 short chain dehydrogenase; Provisional
Probab=94.94 E-value=0.062 Score=53.64 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=41.4
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++|.++|.|+ ||.|++++..|++.|++|+++.|+.++.+++.+.+.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~ 51 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLR 51 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 56899999986 789999999999999999999999988888776664
No 225
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.93 E-value=0.061 Score=52.02 Aligned_cols=46 Identities=30% Similarity=0.325 Sum_probs=40.1
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 50 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL 50 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh
Confidence 45789999998 88999999999999999999999988877776654
No 226
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=94.93 E-value=0.062 Score=54.78 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=41.3
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+|+++|.|+ ||.|++++..|++.|++|++++|+.++++++.+.+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~ 51 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG 51 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence 4789999987 889999999999999999999999999988877663
No 227
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.91 E-value=2.6 Score=39.16 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=91.0
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC---CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 011136 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES---PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110 (493)
Q Consensus 34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~---~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~ 110 (493)
+.+.+...++.+.+.|+|.+++-- +.++.+++.. +.|+++.+-... +. ...++-.+..+.+.+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~--~~--~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPT--GL--TTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCC--CC--CcHHHHHHHHHHHHHc
Confidence 777888888888888999999865 2344444332 588887765321 11 2246677888999999
Q ss_pred CCcEEEEEcccc-------c---chhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC---
Q 011136 111 GADYIDVELQVA-------R---EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL--- 177 (493)
Q Consensus 111 ~~dyIDIEl~~~-------~---~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~--- 177 (493)
|+|.+.+-.... + +.++++...-+.+..+++ |+....+.+.+++.+..+.+...|+|.+|......
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~i-y~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~ 156 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKV-ILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG 156 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEE-EEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence 999999864431 1 223334332113455555 33322233455677776667789999999876422
Q ss_pred -CHhHHHHHHHHhccCCCCEEEEe
Q 011136 178 -DITDVARVFQITVHSQVPIIGLV 200 (493)
Q Consensus 178 -s~~D~~~l~~~~~~~~~PlIa~~ 200 (493)
+.++...+.+..+ .+.|+++.+
T Consensus 157 ~~~~~~~~i~~~~~-~~~~v~~~g 179 (201)
T cd00945 157 ATVEDVKLMKEAVG-GRVGVKAAG 179 (201)
T ss_pred CCHHHHHHHHHhcc-cCCcEEEEC
Confidence 4555544444322 134665543
No 228
>PRK08643 acetoin reductase; Validated
Probab=94.89 E-value=0.064 Score=52.35 Aligned_cols=45 Identities=27% Similarity=0.283 Sum_probs=39.7
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+|.++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS 47 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 578999987 779999999999999999999999988888877654
No 229
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.89 E-value=0.16 Score=51.47 Aligned_cols=120 Identities=23% Similarity=0.339 Sum_probs=77.8
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec-----
Q 011136 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ----- 342 (493)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~----- 342 (493)
...++++|++.....++- +++.+.++.+ .++...|.-|-.|.-..+ ++ -+.+.+++.-.--+
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i----~~----~~i~~~I~p~KDVDGl~~~ 125 (284)
T PRK14179 54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHI----NE----EKILLAIDPKKDVDGFHPM 125 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCC----CH----HHHHhccCccccccccCHh
Confidence 467899999988776663 3577777777 567899999999975322 21 11222222221110
Q ss_pred cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe
Q 011136 343 SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN 411 (493)
Q Consensus 343 ~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~ 411 (493)
+-|+++ |. -.-..|++.-|+.. +.+++||+++|||. |-+|+.++..|.+.|+.|+++.
T Consensus 126 N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~ 189 (284)
T PRK14179 126 NTGHLWSGRPVMIPCTPAGIMEMFREY-----------NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH 189 (284)
T ss_pred hHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence 012221 10 11245666666542 26789999999999 6699999999999999999984
No 230
>PLN02253 xanthoxin dehydrogenase
Probab=94.89 E-value=0.065 Score=53.20 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=41.7
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~ 63 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG 63 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Confidence 466899999987 789999999999999999999999888887776653
No 231
>PRK05875 short chain dehydrogenase; Provisional
Probab=94.88 E-value=0.068 Score=52.85 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=41.5
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|+++|.|+ |+.|++++..|.+.|++|++++|+.++.+.+.+.+.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 52 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIE 52 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 356899999998 889999999999999999999999888877766543
No 232
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.88 E-value=0.064 Score=52.38 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=41.5
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++++++|.|+ |+.|++++..|.+.|++|+++.|+.+..+++.+...
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~ 56 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP 56 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence 367899999998 779999999999999999999999888877766543
No 233
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=94.87 E-value=0.052 Score=55.77 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=46.0
Q ss_pred CCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136 381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII 458 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t 458 (493)
.+++.|+|+|.-|+.-+.++.. .+. +|.|++|+.++++++++.+.... ..+.+..+.++.. .+.+|++=+|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~~v~~~~~~~~av-~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLG------VPVVAVDSAEEAV-RGADIIVTAT 200 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCC------TCEEEESSHHHHH-TTSSEEEE--
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcccc------ccceeccchhhhc-ccCCEEEEcc
Confidence 4689999999999999888865 567 99999999999999999888721 1333334443333 3445555555
Q ss_pred ccCC
Q 011136 459 HLGN 462 (493)
Q Consensus 459 plG~ 462 (493)
|-.-
T Consensus 201 ~s~~ 204 (313)
T PF02423_consen 201 PSTT 204 (313)
T ss_dssp --SS
T ss_pred CCCC
Confidence 5444
No 234
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.87 E-value=0.057 Score=53.02 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=36.6
Q ss_pred ccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 378 ~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
.+++|.++|.|++ |.|++++..|++.|++|++..|+. +.++..++
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~ 51 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQK 51 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHh
Confidence 3678999999985 999999999999999999999984 44443333
No 235
>PRK09072 short chain dehydrogenase; Provisional
Probab=94.86 E-value=0.071 Score=52.38 Aligned_cols=46 Identities=33% Similarity=0.471 Sum_probs=40.3
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++++++|.|+ ||.|++++..|++.|++|++++|+.++.+++...+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL 49 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 35789999996 88999999999999999999999998888776654
No 236
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=94.86 E-value=0.07 Score=51.64 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=40.4
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++++||.|+ |+.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 48 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIR 48 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHH
Confidence 5789999997 779999999999999999999999998888766553
No 237
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.86 E-value=0.28 Score=49.63 Aligned_cols=142 Identities=19% Similarity=0.280 Sum_probs=87.1
Q ss_pred EEeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHh--hhhhhhcH
Q 011136 256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDT 327 (493)
Q Consensus 256 ~~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~ 327 (493)
.-++|+ |-+++.- ..-...++++|++.....++- +++...++.+ .++++.|.-|-.|....+- ..++.+++
T Consensus 35 ii~vg~d~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p 113 (282)
T PRK14169 35 VVLVGSDPASEVYV-RNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDP 113 (282)
T ss_pred EEEeCCChhHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCc
Confidence 445563 3333332 344567899999987776654 3577777777 5678999999999763321 12222222
Q ss_pred HHHHhcceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136 328 VAKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK 401 (493)
Q Consensus 328 ~A~~igAvNti~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~ 401 (493)
.+.+-..+.. +-|+++ |. -.-..|++.-|+.. +.+++||+++|||-+. .|+-++.-|.
T Consensus 114 -~KDVDGl~~~----N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~ 177 (282)
T PRK14169 114 -DKDVDGFSPV----SVGRLWANEPTVVASTPYGIMALLDAY-----------DIDVAGKRVVIVGRSNIVGRPLAGLMV 177 (282)
T ss_pred -ccCcccCChh----hhHHHhcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHH
Confidence 1111111111 012221 10 12246666766653 2678999999999988 9999999999
Q ss_pred hCCCeEEEEe-CCh
Q 011136 402 AKGARVVIAN-RTY 414 (493)
Q Consensus 402 ~~g~~i~v~~-R~~ 414 (493)
..|+.|+++. ||.
T Consensus 178 ~~~atVtichs~T~ 191 (282)
T PRK14169 178 NHDATVTIAHSKTR 191 (282)
T ss_pred HCCCEEEEECCCCC
Confidence 9999999985 554
No 238
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.85 E-value=0.036 Score=49.45 Aligned_cols=46 Identities=24% Similarity=0.217 Sum_probs=36.5
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeE-EEEeCChHHHHHHHHHhhhh
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARV-VIANRTYGESLTFLRLMSWL 427 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i-~v~~R~~~~a~~la~~~~~~ 427 (493)
-++-|||+|-+|.+++.+|.+.|++| -|++|+.+.++++++.+...
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~ 57 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAG 57 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccc
Confidence 47999999999999999999999954 57799999998888776643
No 239
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=94.82 E-value=0.085 Score=54.48 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=38.8
Q ss_pred CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++.|||+|.+|++-+.++... .. +|+|++|+.++++.+++.+.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~ 174 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS 174 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH
Confidence 47899999999999988777654 34 99999999999999998765
No 240
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.81 E-value=0.72 Score=46.78 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=86.0
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 329 (493)
.-++| +|-+++.- ..-..+++++|++.....++. +++.+.++.+ .+++..|.-|-.|.-.. +|+ -
T Consensus 31 iI~vg~d~as~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~----i~~----~ 101 (287)
T PRK14181 31 VVLIGNDPASEVYV-GMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKH----LDA----Q 101 (287)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----cCH----H
Confidence 34556 33333333 334567899999987776654 3677777777 56789999999997532 221 1
Q ss_pred HHhcceeeEEEec-----cCCeEE-EE-----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHH
Q 011136 330 KSIGAVNCIIRRQ-----SDGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALA 397 (493)
Q Consensus 330 ~~igAvNti~~~~-----~~g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~ 397 (493)
+.+.+++.-.--+ +-|+++ |. -.-..|++.-|+.. +.+++||+|+|+|-+. .|+-++
T Consensus 102 ~i~~~I~p~KDVDGl~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla 170 (287)
T PRK14181 102 AILQAISPDKDVDGLHPVNMGKLLLGETDGFIPCTPAGIIELLKYY-----------EIPLHGRHVAIVGRSNIVGKPLA 170 (287)
T ss_pred HHHhccCcccCcccCChhhHHHHhcCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHH
Confidence 2222332221110 012222 21 11246677776652 2678999999999988 999999
Q ss_pred HHHHhC----CCeEEEEeC
Q 011136 398 YGAKAK----GARVVIANR 412 (493)
Q Consensus 398 ~~L~~~----g~~i~v~~R 412 (493)
.-|.+. ++.|+++..
T Consensus 171 ~lL~~~~~~~~AtVtvchs 189 (287)
T PRK14181 171 ALLMQKHPDTNATVTLLHS 189 (287)
T ss_pred HHHHhCcCCCCCEEEEeCC
Confidence 999888 679999874
No 241
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.81 E-value=3.5 Score=45.14 Aligned_cols=226 Identities=15% Similarity=0.125 Sum_probs=138.4
Q ss_pred ccccccCCCCCcE-EEEeecCCCHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEE
Q 011136 13 KLVSGGMRKNPTL-ICVPIMGESVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFT 83 (493)
Q Consensus 13 ~~~~~~~~~~~~~-Icv~l~~~~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T 83 (493)
+|..-++++..-- .++.+ +.++++.-++.+-+.|.+.+|.- .|- +..-++.+.++.+++.. +.|+-.-
T Consensus 6 ~i~DTTLRDG~QSl~atr~---~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL 82 (499)
T PRK12330 6 GVTELALRDAHQSLMATRM---AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQML 82 (499)
T ss_pred EEEECCccchhhcccCccC---CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEE
Confidence 3444455544322 33444 44555555555556799999996 563 11225567788887654 6777777
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEE--EEEcccCCCCC--CHHHHHH
Q 011136 84 YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKV--IVSSHNYQYTP--SVEDLSN 157 (493)
Q Consensus 84 ~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~-~~~~~l~-~~~~~~~ki--I~S~H~f~~tp--~~~el~~ 157 (493)
+|..+==|-..-+++.....++.+.+.|+|.+-|=....+ +.++... ..++.+..+ -++|- ..| +.+.+.+
T Consensus 83 ~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt---~sp~~t~e~~~~ 159 (499)
T PRK12330 83 LRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYT---VSPIHTVEGFVE 159 (499)
T ss_pred EcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEe---cCCCCCHHHHHH
Confidence 8866556666667777778899999999999887544332 2222221 222233333 33431 123 4567899
Q ss_pred HHHHHHHcCCCEEEEEeec--CCHhHHHHHHHHhccC---CCCEEEEe--cCCcchhhhhhccccCCcccccccCCCcCC
Q 011136 158 LVARIQASGADIVKFATTA--LDITDVARVFQITVHS---QVPIIGLV--MGERGLISRILCAKFGGFLTFGTLENGIVS 230 (493)
Q Consensus 158 ~~~~~~~~gaDIvKia~~a--~s~~D~~~l~~~~~~~---~~PlIa~~--MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~s 230 (493)
..+++.+.|||.+-|+=|+ -+|.+..++.+.+++. +.|+-.-+ +--++..+-+..-.-|.-.-=+++.. -+-
T Consensus 160 ~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~G-lg~ 238 (499)
T PRK12330 160 QAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISS-MSL 238 (499)
T ss_pred HHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccc-ccc
Confidence 9999999999998888665 4578888888876543 46665443 22233344443434454433344443 245
Q ss_pred CCCCCCHHhHHHHhh
Q 011136 231 APGQPTIKDLLDLYN 245 (493)
Q Consensus 231 APGQ~~i~~l~~~~~ 245 (493)
.+||++.+++...++
T Consensus 239 ~aGn~atE~vv~~L~ 253 (499)
T PRK12330 239 GPGHNPTESLVEMLE 253 (499)
T ss_pred cccchhHHHHHHHHH
Confidence 789999998887776
No 242
>PRK06199 ornithine cyclodeaminase; Validated
Probab=94.77 E-value=0.077 Score=55.99 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=40.7
Q ss_pred CCEEEEEecchHHHHHHHHHHhC--CC-eEEEEeCChHHHHHHHHHhhh
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAK--GA-RVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~--g~-~i~v~~R~~~~a~~la~~~~~ 426 (493)
-+++.|+|+|..|+.-+.++... .. +|+|+||+.++++++++.+..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~ 203 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAE 203 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH
Confidence 47899999999999999998773 36 999999999999999988764
No 243
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.77 E-value=0.064 Score=53.37 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=37.8
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
+|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 578999998 889999999999999999999999988877654
No 244
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.76 E-value=0.47 Score=48.12 Aligned_cols=121 Identities=22% Similarity=0.341 Sum_probs=78.8
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec-----
Q 011136 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ----- 342 (493)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~----- 342 (493)
-..++++|++.....++. +++.+.++.+ .+++..|.-|-+|.... +|+ -+.+.+++.-.--+
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~----id~----~~i~~~I~p~KDVDGl~~~ 125 (288)
T PRK14171 54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSS----IDK----NKILSAVSPSKDIDGFHPL 125 (288)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCC----CCH----HHHHhccCcccccccCCcc
Confidence 567889999987766653 3577777766 46789999999997532 221 12223333222110
Q ss_pred cCCeEE-EE-----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeC
Q 011136 343 SDGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (493)
Q Consensus 343 ~~g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R 412 (493)
+-|++. |. -.--.|++.-|+.. +.+++||+++|+|-+. .|+-++.-|.+.|+.|+++..
T Consensus 126 N~g~l~~g~~~~~~PcTp~av~~lL~~y-----------~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs 191 (288)
T PRK14171 126 NVGYLHSGISQGFIPCTALGCLAVIKKY-----------EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHS 191 (288)
T ss_pred chhhhhcCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 012322 11 11245666666543 2678999999999988 999999999999999998873
No 245
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.75 E-value=1.8 Score=41.50 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136 32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG 111 (493)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~ 111 (493)
..+.+++.+-++++.+.++|+|-+.--++. ......+... ..+-+.-..+.|. ...+....-.+.+++.|
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p~~v~------~~~~~l~~~~-~~v~~~~~fp~g~---~~~~~k~~eve~A~~~G 82 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNPCFVP------LAREALKGSG-VKVCTVIGFPLGA---TTTEVKVAEAREAIADG 82 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcHHHHH------HHHHHcCCCC-cEEEEEEecCCCC---CcHHHHHHHHHHHHHcC
Confidence 457888888888887778898877532211 1222222222 3344443334443 23456666688999999
Q ss_pred CcEEEEEcccc-------cchhHH---Hhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE--e--ec
Q 011136 112 ADYIDVELQVA-------REFNDS---IRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA--T--TA 176 (493)
Q Consensus 112 ~dyIDIEl~~~-------~~~~~~---l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia--~--~a 176 (493)
+|-||+=++.. +...++ +.. .+.-..|+|.-.... +.+++....+-+.++|||++|.. . ..
T Consensus 83 Adevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l----~~~~i~~a~ria~e~GaD~IKTsTG~~~~~ 158 (203)
T cd00959 83 ADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL----TDEEIIKACEIAIEAGADFIKTSTGFGPGG 158 (203)
T ss_pred CCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC----CHHHHHHHHHHHHHhCCCEEEcCCCCCCCC
Confidence 99999966653 112333 332 222234555543322 35678888888999999999987 3 34
Q ss_pred CCHhHHHHHHHHhc
Q 011136 177 LDITDVARVFQITV 190 (493)
Q Consensus 177 ~s~~D~~~l~~~~~ 190 (493)
-+++|+..+.+..+
T Consensus 159 at~~~v~~~~~~~~ 172 (203)
T cd00959 159 ATVEDVKLMKEAVG 172 (203)
T ss_pred CCHHHHHHHHHHhC
Confidence 56788877766654
No 246
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.36 Score=48.99 Aligned_cols=138 Identities=20% Similarity=0.295 Sum_probs=85.4
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 329 (493)
.-++| +|-+.+.--.. -..++++|++.....++- +++.+.++.+ .+++..|.-|-+|.-.. +|+.
T Consensus 34 ii~vg~d~as~~Yv~~k-~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~----i~~~---- 104 (287)
T PRK14173 34 VVRLGEDPASVSYVRLK-DRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPH----IDFQ---- 104 (287)
T ss_pred EEEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCHH----
Confidence 44566 33333333223 456889999988777653 3577777777 45789999999997532 2211
Q ss_pred HHhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHH
Q 011136 330 KSIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAY 398 (493)
Q Consensus 330 ~~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~ 398 (493)
+.+.+++.-.--+ +-|+++ |. -.-..|++.-|+.. +.+++||+|+|+|.+. .|+-++.
T Consensus 105 ~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~ 173 (287)
T PRK14173 105 RVLEAIDPLKDVDGFHPLNVGRLWMGGEALEPCTPAGVVRLLKHY-----------GIPLAGKEVVVVGRSNIVGKPLAA 173 (287)
T ss_pred HHHhccCccccccccChhhhHHHhcCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHH
Confidence 2223333221110 012221 11 11245666666542 2678999999999988 9999999
Q ss_pred HHHhCCCeEEEEeCC
Q 011136 399 GAKAKGARVVIANRT 413 (493)
Q Consensus 399 ~L~~~g~~i~v~~R~ 413 (493)
-|...|+.|+++.+.
T Consensus 174 lL~~~~aTVtichs~ 188 (287)
T PRK14173 174 LLLREDATVTLAHSK 188 (287)
T ss_pred HHHHCCCEEEEeCCC
Confidence 999999999988653
No 247
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.71 E-value=0.2 Score=51.60 Aligned_cols=77 Identities=17% Similarity=0.080 Sum_probs=51.0
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEE--eecccccCCceEEEEe
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVI--RILLFTWHLKFFIAAN 456 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~--~~l~~~~~~~~~i~~n 456 (493)
+.+++.|+|+|.+|.++++.++..|. +|.+++++.++++..+-++.... .......+|. .+.+ .. .+.++++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~--~~~~~~~~i~~~~d~~-~l-~~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFS--TLVGSNINILGTNNYE-DI-KDSDVVVI 79 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhc--cccCCCeEEEeCCCHH-Hh-CCCCEEEE
Confidence 35689999999999999999999895 99999999888765554443322 1111122332 2322 33 56677777
Q ss_pred cccc
Q 011136 457 IIHL 460 (493)
Q Consensus 457 ~tpl 460 (493)
+...
T Consensus 80 tag~ 83 (319)
T PTZ00117 80 TAGV 83 (319)
T ss_pred CCCC
Confidence 6643
No 248
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.70 E-value=0.15 Score=50.47 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=37.5
Q ss_pred EEEEEecchHHHHHHHHHHhCCC---eEEEEeCChHHHHHHHHHh
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA---RVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~---~i~v~~R~~~~a~~la~~~ 424 (493)
++.|||+|-+|++++.+|.+.|. .+.+++|+.++++++++.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~ 46 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF 46 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc
Confidence 58899999999999999998884 5789999999999988865
No 249
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.70 E-value=0.068 Score=53.11 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=35.9
Q ss_pred cCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++|.++|.|++ |.|++++..|++.|++|++..|+ ++.++.++.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~ 51 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEF 51 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHH
Confidence 568999999986 89999999999999999999887 3433333433
No 250
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=94.69 E-value=0.085 Score=51.58 Aligned_cols=48 Identities=27% Similarity=0.404 Sum_probs=42.1
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|+++|.|+ ||.|++++..|.+.|++++++.|+.++.+++++.+.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~ 56 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ 56 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 466899999987 779999999999999999999999988888877654
No 251
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=94.69 E-value=0.083 Score=51.93 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=40.0
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~ 425 (493)
..+++|+++|.|+ ||.|++++..|++.|++|+++. |+.++++.+++.+.
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~ 54 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLE 54 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3567899999998 7899999999999999888775 56777777766554
No 252
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.65 E-value=0.074 Score=53.78 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=36.9
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++|.|||+|-||.+++..|+..|++|++++|+.++.++..+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 44 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAME 44 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 57999999999999999999999999999999988776544
No 253
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.65 E-value=0.091 Score=50.67 Aligned_cols=47 Identities=28% Similarity=0.349 Sum_probs=40.5
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++++++|.|+ ||.|++++..|.+.|++|.+++|+.++.+++++.+.
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~ 52 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVE 52 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 45789999997 679999999999999999999999988877766653
No 254
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.64 E-value=0.043 Score=54.22 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=31.5
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~ 413 (493)
+++++|+|+|+||.|..++..|+..|+ +|++++++
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 557899999999999999999999999 99997753
No 255
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.62 E-value=0.36 Score=49.25 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=79.0
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec-----
Q 011136 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ----- 342 (493)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~----- 342 (493)
...++++|++..-..++- +++.+.++.+ .+++..|.-|-.|.-. ++|+ -+.+.+++.-.--+
T Consensus 61 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~----~id~----~~i~~~I~p~KDVDGl~~~ 132 (299)
T PLN02516 61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPK----HINE----EKILNEISLEKDVDGFHPL 132 (299)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CcCH----HHHHhccCcccccCccCHh
Confidence 456889999876555542 4677777777 5688999999999642 2221 12223333221110
Q ss_pred cCCeEE-E--E----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCC
Q 011136 343 SDGKLF-G--Y----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT 413 (493)
Q Consensus 343 ~~g~l~-G--~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~ 413 (493)
+-|++. | . -.-..|++.-|+.. +.+++||+|+|||-+. .|+-++.-|...|+.|+++...
T Consensus 133 n~g~l~~~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~ 200 (299)
T PLN02516 133 NIGKLAMKGREPLFLPCTPKGCLELLSRS-----------GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR 200 (299)
T ss_pred hHhhHhcCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC
Confidence 013332 2 1 11245666666542 2678999999999988 9999999999999999998753
No 256
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.58 E-value=1.8 Score=41.87 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=71.6
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCC-CCCCCCHHHHHHHHHHHHHhCC
Q 011136 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEG-GQYDGDENERVDVLRLAMELGA 112 (493)
Q Consensus 34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG-G~~~~~~~~~~~ll~~~l~~~~ 112 (493)
+.++...-++.+...|+-++++. - .+.++.+++.+.+|+|...|....+ -.+... ..+.++.+.+.|+
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~--~------~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~---~~~~v~~a~~aGa 89 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN--G------VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP---TLKEVDALAAAGA 89 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC--C------HHHHHHHHHhCCCCEEEEEecCCCCCCceECC---CHHHHHHHHHcCC
Confidence 34445555555556788888862 1 3467777777899998776632111 122111 2234677888999
Q ss_pred cEEEEEccc---cc-chhHHHh-hcCC-CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136 113 DYIDVELQV---AR-EFNDSIR-GKKP-EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (493)
Q Consensus 113 dyIDIEl~~---~~-~~~~~l~-~~~~-~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi 172 (493)
|+|-+++.. +. +...++. ..++ .+..++...| +.+++ .++.+.|+|++.+
T Consensus 90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~------t~ee~----~~a~~~G~d~i~~ 145 (221)
T PRK01130 90 DIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS------TLEEG----LAAQKLGFDFIGT 145 (221)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC------CHHHH----HHHHHcCCCEEEc
Confidence 999887754 21 2223333 2344 6888888766 23333 5778899999876
No 257
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.57 E-value=0.1 Score=57.28 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=37.5
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++|.|||+|-||+.++..|+..|++|++++|+.++.++..+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~ 48 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARD 48 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 68999999999999999999999999999999999887533
No 258
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.56 E-value=0.085 Score=50.92 Aligned_cols=47 Identities=30% Similarity=0.482 Sum_probs=40.1
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+.+++++|.|+ |+.|++++..|.+.|++|+++.|+.++...+.+.+.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVE 51 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 45789999996 779999999999999999999999887777666544
No 259
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=94.56 E-value=0.76 Score=44.27 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH---HHHH
Q 011136 32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD---VLRL 106 (493)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~---ll~~ 106 (493)
..+++++. .+.+.|||-|||.-++-. .+.|+ ..++.+++..++|+-+-+|+ .+|.|--++++... -++.
T Consensus 7 v~s~~~a~----~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRp--r~gdF~Ys~~E~~~M~~dI~~ 80 (201)
T PF03932_consen 7 VESLEDAL----AAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRP--RGGDFVYSDEEIEIMKEDIRM 80 (201)
T ss_dssp ESSHHHHH----HHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--S--SSS-S---HHHHHHHHHHHHH
T ss_pred eCCHHHHH----HHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECC--CCCCccCCHHHHHHHHHHHHH
Confidence 34555443 445779999999987643 34442 35666777789999999995 35666666655433 3556
Q ss_pred HHHhCCcEEEE-----EcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhH
Q 011136 107 AMELGADYIDV-----ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITD 181 (493)
Q Consensus 107 ~l~~~~dyIDI-----El~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D 181 (493)
+.++|++-+-+ +-..+.+..+.+... .++..+..+. .|+.+++ ..+-++++.++|.|-|==..-+.+..|
T Consensus 81 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~-a~~~~~tFHR-AfD~~~d---~~~al~~L~~lG~~rVLTSGg~~~a~~ 155 (201)
T PF03932_consen 81 LRELGADGFVFGALTEDGEIDEEALEELIEA-AGGMPVTFHR-AFDEVPD---PEEALEQLIELGFDRVLTSGGAPTALE 155 (201)
T ss_dssp HHHTT-SEEEE--BETTSSB-HHHHHHHHHH-HTTSEEEE-G-GGGGSST---HHHHHHHHHHHT-SEEEESTTSSSTTT
T ss_pred HHHcCCCeeEEEeECCCCCcCHHHHHHHHHh-cCCCeEEEeC-cHHHhCC---HHHHHHHHHhcCCCEEECCCCCCCHHH
Confidence 66788887655 233445566677753 3577776633 3888887 455677777778764433333334444
Q ss_pred HHHHH
Q 011136 182 VARVF 186 (493)
Q Consensus 182 ~~~l~ 186 (493)
....+
T Consensus 156 g~~~L 160 (201)
T PF03932_consen 156 GIENL 160 (201)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 43333
No 260
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.56 E-value=0.071 Score=53.18 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=37.7
Q ss_pred ccCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCCh---HHHHHHHHHh
Q 011136 378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY---GESLTFLRLM 424 (493)
Q Consensus 378 ~l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~---~~a~~la~~~ 424 (493)
-+++|.++|.|+ +|.|++++..|++.|++|++..|+. ++.+++++.+
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~ 59 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL 59 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc
Confidence 356899999998 5999999999999999999988873 4455555544
No 261
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.55 E-value=0.043 Score=48.94 Aligned_cols=32 Identities=28% Similarity=0.595 Sum_probs=28.9
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR 412 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R 412 (493)
.++|+|+|+||.|..++..|+..|+ +++|++.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 4789999999999999999999999 9999874
No 262
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.54 E-value=0.081 Score=54.78 Aligned_cols=93 Identities=15% Similarity=0.020 Sum_probs=58.7
Q ss_pred cccCCCEEEEEecchHHHHHHHHH-HhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGA-KAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA 455 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L-~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~ 455 (493)
..+.|+++.|||.|.+|++++..| ...|++|+.++|+..+.. ..... ...++++-+ ++.++++
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~-------------~~~~l~ell-~~aDvIv 205 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--ATYVD-------------YKDTIEEAV-EGADIVT 205 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--Hhhcc-------------ccCCHHHHH-HhCCEEE
Confidence 467899999999999999999998 456789999999865431 11100 012333333 4567777
Q ss_pred eccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136 456 NIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK 487 (493)
Q Consensus 456 n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
.++|+.-....+.. ...+..+-++.++.+-
T Consensus 206 l~lP~t~~t~~li~--~~~l~~mk~gailIN~ 235 (332)
T PRK08605 206 LHMPATKYNHYLFN--ADLFKHFKKGAVFVNC 235 (332)
T ss_pred EeCCCCcchhhhcC--HHHHhcCCCCcEEEEC
Confidence 77777665554432 1234444456666654
No 263
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.53 E-value=0.12 Score=52.56 Aligned_cols=76 Identities=20% Similarity=0.137 Sum_probs=53.3
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEE
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVI 438 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~ 438 (493)
+.+.+|||+|+||.|..++..|+..|+ +|+|++-+ ..||+..++.+...+. .-+++
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp----~V~V~ 92 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP----YVPVT 92 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCC----CCEEE
Confidence 446799999999999999999999999 99998743 3566666666665542 22444
Q ss_pred EEee-cccccCCceEEEEecc
Q 011136 439 VIRI-LLFTWHLKFFIAANII 458 (493)
Q Consensus 439 v~~~-l~~~~~~~~~i~~n~t 458 (493)
+... +.+.+-.++++++.++
T Consensus 93 ~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 93 VSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred EEeccCCHHHHhcCCEEEEec
Confidence 4432 2233446788888665
No 264
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=94.50 E-value=3.8 Score=45.82 Aligned_cols=210 Identities=14% Similarity=0.140 Sum_probs=132.2
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136 34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (493)
Q Consensus 34 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (493)
+.++.+.-++.+.+.|.+.+|.- .|. +..-++.+.++.+++. .+.++..-+|..+--|...-+++...+.++
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~ 98 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK 98 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence 34555555666667799999995 442 1122456677777653 357777778866666655556666777889
Q ss_pred HHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 011136 106 LAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LDI 179 (493)
Q Consensus 106 ~~l~~~~dyIDIEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp--~~~el~~~~~~~~~~gaDIvKia~~a--~s~ 179 (493)
.+++.|+|.+-|=....+ .....+..++..+..+.++... ..+| +.+.+.+..+++.+.|||.+-|+=|+ -++
T Consensus 99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~-t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P 177 (582)
T TIGR01108 99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISY-TTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTP 177 (582)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCH
Confidence 999999998887654432 1222232334456666655221 2255 66789999999999999998887555 457
Q ss_pred hHHHHHHHHhcc-CCCCEEE--EecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136 180 TDVARVFQITVH-SQVPIIG--LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (493)
Q Consensus 180 ~D~~~l~~~~~~-~~~PlIa--~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~ 245 (493)
.++.++.+.+++ .+.|+-. -++--+|..+-+..-.-|....=+++.. -.-..||++++++...++
T Consensus 178 ~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~G-lG~~tGn~~le~vv~~L~ 245 (582)
T TIGR01108 178 KAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISS-MSGGTSHPPTETMVAALR 245 (582)
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEecccc-ccccccChhHHHHHHHHH
Confidence 888888877554 2455443 3444445455554444454433334332 234689999988777665
No 265
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.48 E-value=0.1 Score=51.13 Aligned_cols=48 Identities=31% Similarity=0.371 Sum_probs=41.5
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|++||.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+.+.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~ 57 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE 57 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 456899999996 889999999999999999999999888777766554
No 266
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.47 E-value=0.14 Score=52.76 Aligned_cols=80 Identities=16% Similarity=-0.012 Sum_probs=51.5
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII 458 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t 458 (493)
+.+++.|||||.+|.++++.++..|. +|+++++++++++.-+-++..........-+++.-.+. +.. .+.++++++.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l-~~aDiVI~ta 82 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDI-AGSDVVIVTA 82 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHh-CCCCEEEECC
Confidence 34789999999999999999999996 99999999987654333322221000001133322333 233 6778888766
Q ss_pred ccC
Q 011136 459 HLG 461 (493)
Q Consensus 459 plG 461 (493)
..+
T Consensus 83 g~~ 85 (321)
T PTZ00082 83 GLT 85 (321)
T ss_pred CCC
Confidence 553
No 267
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.45 E-value=0.1 Score=50.71 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=40.5
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++|+++|.|+ |+.|++++..|.+.|.+|+++.|+.++.+++.+.+.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQ 49 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4689999996 889999999999999999999999998888776553
No 268
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.45 E-value=0.084 Score=56.14 Aligned_cols=44 Identities=36% Similarity=0.462 Sum_probs=39.0
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTF 420 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~l 420 (493)
..+.|++|+|+|+|..|+.++..++..|++|+++++++.++...
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA 234 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH
Confidence 34679999999999999999999999999999999998876443
No 269
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.45 E-value=0.5 Score=47.79 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=86.9
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 329 (493)
.-++| +|-+.+.-- .-..+++++|++.....++. +++.+.++.+ .++++.|.-|-.|.... +|+ -
T Consensus 35 iI~vg~d~as~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~----i~~----~ 105 (282)
T PRK14182 35 VVRVGDDPASAIYVR-GKRKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKH----VDE----R 105 (282)
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH----H
Confidence 34555 333333332 23456899999987766653 3677777777 56789999999997532 221 1
Q ss_pred HHhcceeeEEEec-----cCCeEE-EE-----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHH
Q 011136 330 KSIGAVNCIIRRQ-----SDGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALA 397 (493)
Q Consensus 330 ~~igAvNti~~~~-----~~g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~ 397 (493)
+.+.+++.-.--+ +-|+++ |. -.-..|++.-|+.. +.+++||+++|+|-+. .|+-++
T Consensus 106 ~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~avi~ll~~~-----------~i~l~Gk~vvViGrS~iVGkPla 174 (282)
T PRK14182 106 AVLDAISPAKDADGFHPFNVGALSIGIAGVPRPCTPAGVMRMLDEA-----------RVDPKGKRALVVGRSNIVGKPMA 174 (282)
T ss_pred HHHhccCcccCcCCCCHhHHHHHhCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHH
Confidence 2333333322110 012221 11 12256777777653 2678999999999988 999999
Q ss_pred HHHHhCCCeEEEEeCC
Q 011136 398 YGAKAKGARVVIANRT 413 (493)
Q Consensus 398 ~~L~~~g~~i~v~~R~ 413 (493)
.-|.+.|+.|+++...
T Consensus 175 ~lL~~~~AtVtichs~ 190 (282)
T PRK14182 175 MMLLERHATVTIAHSR 190 (282)
T ss_pred HHHHHCCCEEEEeCCC
Confidence 9999999999988753
No 270
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.42 E-value=0.081 Score=47.67 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.1
Q ss_pred EEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++|+|+|++|...++.|++.|++|+++.|.. +++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~ 38 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE 38 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh
Confidence 6899999999999999999999999999998 7777544
No 271
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.42 E-value=0.1 Score=50.24 Aligned_cols=47 Identities=38% Similarity=0.541 Sum_probs=40.3
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~ 425 (493)
+.+|+++|.|+ |+.|+.++..|++.|++++++ .|+.++.+.+.+.+.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~ 51 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIK 51 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 55789999997 899999999999999988888 999888877776554
No 272
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.42 E-value=0.1 Score=57.00 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=37.5
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++|.|||+|-||.+++..|+..|++|++++|++++.+.+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~ 45 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGE 45 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 57999999999999999999999999999999999877654
No 273
>PLN02712 arogenate dehydrogenase
Probab=94.42 E-value=0.15 Score=57.84 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=34.7
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
..++++++.|||.|.+|++++.+|.+.|.+|++++|+..
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~ 403 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY 403 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH
Confidence 345678999999999999999999999999999999854
No 274
>PRK06720 hypothetical protein; Provisional
Probab=94.40 E-value=0.12 Score=48.33 Aligned_cols=48 Identities=27% Similarity=0.459 Sum_probs=41.1
Q ss_pred ccCCCEEEEEecc-hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGaG-Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|.++|.|++ |.|++++..|.+.|++|++++|+.+..++.++.+.
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~ 61 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEIT 61 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 4678999999985 69999999999999999999999888777766554
No 275
>PRK12742 oxidoreductase; Provisional
Probab=94.39 E-value=0.1 Score=50.11 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=38.0
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~ 425 (493)
+++|+++|.|+ ||.|++++..|++.|++|+++.| +.++.+++.+.++
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~ 52 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETG 52 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhC
Confidence 56899999997 88999999999999998877654 6677777766543
No 276
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.39 E-value=1.4 Score=44.82 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=58.5
Q ss_pred CCcEEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCC-----------CCc---hhHHHHHHhhCCCcEEEEecc
Q 011136 22 NPTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKN-----------FNP---RENIKTLIKESPVPTLFTYRP 86 (493)
Q Consensus 22 ~~~~Icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~-----------~~~---~~~l~~l~~~~~~PiI~T~R~ 86 (493)
..|.| +++.++ +.++..+-++.+.+.|+|++||-+.+-.. .++ .+.++.+++..++|+.+-+|.
T Consensus 99 ~~p~i-~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~ 177 (299)
T cd02940 99 DKILI-ASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP 177 (299)
T ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC
Confidence 35555 688888 99999888888766799999998875321 011 123444555568999988874
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCcEEE
Q 011136 87 IWEGGQYDGDENERVDVLRLAMELGADYID 116 (493)
Q Consensus 87 ~~eGG~~~~~~~~~~~ll~~~l~~~~dyID 116 (493)
. .....++.+.+.+.|++.|.
T Consensus 178 ~---------~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 178 N---------ITDIREIARAAKEGGADGVS 198 (299)
T ss_pred C---------chhHHHHHHHHHHcCCCEEE
Confidence 1 12455677777888999885
No 277
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.37 E-value=0.79 Score=46.69 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=86.0
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 329 (493)
.-++| +|-+++.-- .-...++++|++.....++. +++.+.++.+ .+++..|.-|-.|... ++|+ -
T Consensus 37 iI~vg~d~as~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~----~i~~----~ 107 (294)
T PRK14187 37 VILVGDDPASQLYVR-NKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPN----HIDK----N 107 (294)
T ss_pred EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----H
Confidence 44556 343333332 33567899999987766653 3576677777 5678999999999852 2221 1
Q ss_pred HHhcceeeEEEec-----cCCeEE-EEe------ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHH
Q 011136 330 KSIGAVNCIIRRQ-----SDGKLF-GYN------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKAL 396 (493)
Q Consensus 330 ~~igAvNti~~~~-----~~g~l~-G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~ 396 (493)
+.+.+++.-.--+ +-|+++ |.+ .-..|++.-|+.. +.+++||+++|+|.+. .|+-+
T Consensus 108 ~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPl 176 (294)
T PRK14187 108 LIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTI-----------TRNLSGSDAVVIGRSNIVGKPM 176 (294)
T ss_pred HHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHH
Confidence 1222222221110 012221 221 1256666666652 2678999999999988 99999
Q ss_pred HHHHHhCCCeEEEEeCC
Q 011136 397 AYGAKAKGARVVIANRT 413 (493)
Q Consensus 397 ~~~L~~~g~~i~v~~R~ 413 (493)
+.-|.+.|+.|+++...
T Consensus 177 a~lL~~~~aTVt~chs~ 193 (294)
T PRK14187 177 ACLLLGENCTVTTVHSA 193 (294)
T ss_pred HHHHhhCCCEEEEeCCC
Confidence 99999999999988763
No 278
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.37 E-value=0.11 Score=50.36 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=39.6
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+|+++|.|+ ||.|++++..|.+.|++|++..|+.++.+++.+.+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 47 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELL 47 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 578999985 889999999999999999999999998888876554
No 279
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.37 E-value=0.57 Score=47.37 Aligned_cols=140 Identities=20% Similarity=0.305 Sum_probs=84.3
Q ss_pred EEeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136 256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT 327 (493)
Q Consensus 256 ~~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~ 327 (493)
.-++|+ |-+++.- ..-..+++++|++..-..++- +++.+.++.+ .+++..|+-|-.|....+ -..++.+++
T Consensus 36 ii~vgdd~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p 114 (281)
T PRK14183 36 VILVGDDPASHTYV-KMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDP 114 (281)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCc
Confidence 345563 3333333 233557889999876555533 3577777777 568899999999975222 111222222
Q ss_pred HHHHhcceeeEEEeccCCeE-EEEe----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136 328 VAKSIGAVNCIIRRQSDGKL-FGYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK 401 (493)
Q Consensus 328 ~A~~igAvNti~~~~~~g~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~ 401 (493)
.+.+-..+..- -|++ .|.+ .-..|++.-|++. +.+++||+++|+|-+. .|+-++.-|.
T Consensus 115 -~KDVDGl~~~n----~g~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~~VG~Pla~lL~ 178 (281)
T PRK14183 115 -KKDVDGFHPYN----VGRLVTGLDGFVPCTPLGVMELLEEY-----------EIDVKGKDVCVVGASNIVGKPMAALLL 178 (281)
T ss_pred -hhcccccChhh----hhHHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCCcchHHHHHHHH
Confidence 11122221110 1222 1111 1156677766652 2678999999999985 9999999999
Q ss_pred hCCCeEEEEeC
Q 011136 402 AKGARVVIANR 412 (493)
Q Consensus 402 ~~g~~i~v~~R 412 (493)
+.|+.|+++..
T Consensus 179 ~~~AtVti~hs 189 (281)
T PRK14183 179 NANATVDICHI 189 (281)
T ss_pred HCCCEEEEeCC
Confidence 99999998874
No 280
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.36 E-value=0.11 Score=49.75 Aligned_cols=46 Identities=33% Similarity=0.434 Sum_probs=39.9
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.++++||.|+ |+.|+.++..|.+.|.+|.+++|+.++.+.+...+.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 50 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR 50 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHH
Confidence 4688999997 889999999999999999999999988777766554
No 281
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.36 E-value=0.1 Score=50.85 Aligned_cols=44 Identities=32% Similarity=0.398 Sum_probs=39.4
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+|+++|.|+ ||.|++++..|++.|++|++++|+.++.+.+++.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~ 46 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL 46 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 468999998 78999999999999999999999999988887755
No 282
>PRK08628 short chain dehydrogenase; Provisional
Probab=94.35 E-value=0.093 Score=51.25 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=39.1
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
.++++++++|.|+ ||.|++++..|.+.|+++.++.|+.++. ++.+.+
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~ 50 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEEL 50 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHH
Confidence 3577899999997 7799999999999999999999988766 554444
No 283
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.35 E-value=0.088 Score=51.96 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=37.9
Q ss_pred ccCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCC---hHHHHHHHHHh
Q 011136 378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRT---YGESLTFLRLM 424 (493)
Q Consensus 378 ~l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~---~~~a~~la~~~ 424 (493)
.+++|.++|.|+ +|.|++++..|++.|++|++.+|+ .++.+++++.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~ 56 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL 56 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc
Confidence 356899999998 599999999999999999998765 34556665554
No 284
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=94.34 E-value=0.11 Score=53.78 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=42.2
Q ss_pred CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhhhhh
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMSWLL 428 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~~~~ 428 (493)
-+...|||+|..|+.-+.++... ++ +|.|++|+++++++++..+....
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~ 179 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG 179 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc
Confidence 46899999999999999999775 56 99999999999999998777654
No 285
>PRK08303 short chain dehydrogenase; Provisional
Probab=94.33 E-value=0.097 Score=53.34 Aligned_cols=48 Identities=33% Similarity=0.454 Sum_probs=39.1
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh----------HHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY----------GESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~----------~~a~~la~~~~ 425 (493)
.+++|.++|.|+ +|.|++++.+|++.|++|++++|+. ++.+++++.+.
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~ 63 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVT 63 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHH
Confidence 467899999998 6899999999999999999999973 45555555543
No 286
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.33 E-value=0.19 Score=51.69 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=31.1
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
+++|++.|||+|-+|.+++..|.+.|.++++..|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~ 36 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKG 36 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcC
Confidence 357899999999999999999999999877766654
No 287
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.33 E-value=0.092 Score=52.51 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=32.5
Q ss_pred cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
+++|.++|.|+ +|.|++++..|++.|++|++..|+.
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~ 41 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNE 41 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCH
Confidence 45799999998 4999999999999999999999985
No 288
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.32 E-value=5.3 Score=39.28 Aligned_cols=196 Identities=15% Similarity=0.163 Sum_probs=118.4
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCC-------CchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136 34 SVDKMVVDMGKANASGADLVEIRLDGLKNF-------NPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (493)
Q Consensus 34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-------~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (493)
+.++.++-++.+.+.|+|.||+=. .... ++.+.++.+++.. +.++..-+|. | .+.++
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~--~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~----~---------~~~i~ 81 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGS--GASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN----R---------EKGIE 81 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc--CcCccccccCCCHHHHHHHHHhccCCcEEEEEccC----c---------hhhHH
Confidence 667777777777788999999943 2111 2234566665544 4566555653 1 34566
Q ss_pred HHHHhCCcEEEEEcccc----------------cchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCC
Q 011136 106 LAMELGADYIDVELQVA----------------REFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGAD 168 (493)
Q Consensus 106 ~~l~~~~dyIDIEl~~~----------------~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaD 168 (493)
.+.+.|++.|-+=+... +...+.+..+++.+..+.++.-+ +.+.-+.+++.+.++++.++|+|
T Consensus 82 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 161 (265)
T cd03174 82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGAD 161 (265)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC
Confidence 77788888888866554 11222333345678888888844 43212567899999999999999
Q ss_pred EEEEEee--cCCHhHHHHHHHHhccC-C-CCEEEEecCCc--chhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHH
Q 011136 169 IVKFATT--ALDITDVARVFQITVHS-Q-VPIIGLVMGER--GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLD 242 (493)
Q Consensus 169 IvKia~~--a~s~~D~~~l~~~~~~~-~-~PlIa~~MG~~--G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~ 242 (493)
.+-++-+ .-+++++.++++.+.+. + .|+-.-+=-.. |...-+..-..|....=+++.+ -.-..|+++.+++..
T Consensus 162 ~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G-~G~~~Gn~~~e~~~~ 240 (265)
T cd03174 162 EISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNG-LGERAGNAATEDLVA 240 (265)
T ss_pred EEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccc-ccccccCccHHHHHH
Confidence 9988633 35688998888875543 2 44443332222 2222233323343332233332 234688998888776
Q ss_pred Hhh
Q 011136 243 LYN 245 (493)
Q Consensus 243 ~~~ 245 (493)
.++
T Consensus 241 ~l~ 243 (265)
T cd03174 241 ALE 243 (265)
T ss_pred HHH
Confidence 655
No 289
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.31 E-value=0.1 Score=50.69 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=37.2
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 57899986 8899999999999999999999999888777654
No 290
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.31 E-value=0.093 Score=51.69 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=34.5
Q ss_pred cccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 377 ~~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
..+++|.++|.|++ |.|++++..|++.|++|+++.|+.+
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~ 47 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDK 47 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChh
Confidence 45678999999975 8999999999999999999999854
No 291
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.29 E-value=0.16 Score=51.26 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=34.8
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
+++|+|+|.+|.+++..|++.|.+|+++.| .++.+.+.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~ 40 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE 40 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh
Confidence 589999999999999999999999999999 777776654
No 292
>PRK06914 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.11 Score=51.37 Aligned_cols=45 Identities=24% Similarity=0.275 Sum_probs=39.0
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+|.++|.|+ ||.|++++..|++.|++|+++.|+.++.+.+.+...
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 48 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQAT 48 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH
Confidence 578999997 789999999999999999999999988877766543
No 293
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.29 E-value=7.4 Score=42.13 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=136.2
Q ss_pred ccccccCCCCCcEE-EEeecCCCHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhh-CCCcEEEE
Q 011136 13 KLVSGGMRKNPTLI-CVPIMGESVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKE-SPVPTLFT 83 (493)
Q Consensus 13 ~~~~~~~~~~~~~I-cv~l~~~~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T 83 (493)
+|..-++++..--. +..++ .++.+.-++.+.+.|.+.+|.- .|. +..-++.+.++.+++. .+.++..-
T Consensus 5 ~I~DtTlRDG~Qs~~~~~~~---t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l 81 (448)
T PRK12331 5 KITETVLRDGQQSLIATRMT---TEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQML 81 (448)
T ss_pred EEEECCCCccccCcCCcccC---HHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 34444444443332 33333 3444444555556799999994 442 1222456677777765 35666666
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEEE--EEcccCCCCCCHHHHHHHH
Q 011136 84 YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKVI--VSSHNYQYTPSVEDLSNLV 159 (493)
Q Consensus 84 ~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~-~~~~~l~-~~~~~~~kiI--~S~H~f~~tp~~~el~~~~ 159 (493)
+|..+--|..+-+++...+.++.+++.|++.|-|=....+ +.+.+.+ .+++.+..+. ++|-+ ..--+.+.+.+..
T Consensus 82 ~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~a 160 (448)
T PRK12331 82 LRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT-SPVHTIDYFVKLA 160 (448)
T ss_pred eccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec-CCCCCHHHHHHHH
Confidence 8876666766667777778899999999999888655432 1222222 2334455543 34432 2111556789999
Q ss_pred HHHHHcCCCEEEEEeecC--CHhHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCcCCCCCC
Q 011136 160 ARIQASGADIVKFATTAL--DITDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQ 234 (493)
Q Consensus 160 ~~~~~~gaDIvKia~~a~--s~~D~~~l~~~~~~-~~~PlIa~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ 234 (493)
+++.+.|||.+-|+=|+- +|.++.++.+.+++ .+.|+-.- ++--+|..+-+..-.-|....=+++.. -+...||
T Consensus 161 ~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~g-lg~gaGN 239 (448)
T PRK12331 161 KEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISP-FAGGTSQ 239 (448)
T ss_pred HHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccc-cCCCcCC
Confidence 999999999988886653 57888888877654 35665442 233344444444444454433344432 1234789
Q ss_pred CCHHhHHHHhh
Q 011136 235 PTIKDLLDLYN 245 (493)
Q Consensus 235 ~~i~~l~~~~~ 245 (493)
++.+++...++
T Consensus 240 ~~tE~lv~~L~ 250 (448)
T PRK12331 240 PATESMVAALQ 250 (448)
T ss_pred HhHHHHHHHHH
Confidence 99988877665
No 294
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.1 Score=51.08 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=39.0
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 47 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP 47 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc
Confidence 468999985 889999999999999999999999988887776553
No 295
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.25 E-value=1.3 Score=44.78 Aligned_cols=140 Identities=20% Similarity=0.268 Sum_probs=92.2
Q ss_pred EEeecCCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHH
Q 011136 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330 (493)
Q Consensus 256 ~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~ 330 (493)
.-++|+.-+....=.+-...+++.|+...+..++. ++|.+.++.+ .++++.|.-|-.|.=. ++|+- +
T Consensus 35 vilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~----hld~~----~ 106 (283)
T COG0190 35 VILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPK----HLDEQ----K 106 (283)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC----CCCHH----H
Confidence 34567554444444667888999999887776653 4677777777 6789999999998532 22210 1
Q ss_pred HhcceeeEEEe----c-cCCeEE-E---E-eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHH
Q 011136 331 SIGAVNCIIRR----Q-SDGKLF-G---Y-NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYG 399 (493)
Q Consensus 331 ~igAvNti~~~----~-~~g~l~-G---~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~ 399 (493)
.+.++.--.-- + .-|++. + + -.--.|++.-|++. +.+++||+++|+|.+. .||-++.-
T Consensus 107 il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~-----------~i~l~Gk~~vVVGrS~iVGkPla~l 175 (283)
T COG0190 107 LLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEY-----------GIDLRGKNVVVVGRSNIVGKPLALL 175 (283)
T ss_pred HHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcCcHHHHHH
Confidence 11111111000 0 013433 2 0 12268888888763 2678999999999998 99999999
Q ss_pred HHhCCCeEEEEeCCh
Q 011136 400 AKAKGARVVIANRTY 414 (493)
Q Consensus 400 L~~~g~~i~v~~R~~ 414 (493)
|...++.|+|+...-
T Consensus 176 L~~~naTVtvcHs~T 190 (283)
T COG0190 176 LLNANATVTVCHSRT 190 (283)
T ss_pred HHhCCCEEEEEcCCC
Confidence 999999999988643
No 296
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.1 Score=51.04 Aligned_cols=44 Identities=25% Similarity=0.223 Sum_probs=39.0
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
|++||.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 46 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG 46 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Confidence 57999987 789999999999999999999999998888877554
No 297
>PLN02494 adenosylhomocysteinase
Probab=94.23 E-value=0.12 Score=55.74 Aligned_cols=43 Identities=37% Similarity=0.468 Sum_probs=38.4
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT 419 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~ 419 (493)
..+.|++++|+|.|..|+.++..+...|++|+++++++.++..
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e 292 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ 292 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH
Confidence 4578999999999999999999999999999999999877543
No 298
>PRK08017 oxidoreductase; Provisional
Probab=94.20 E-value=0.099 Score=50.84 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=35.7
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL 421 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la 421 (493)
|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 57999998 99999999999999999999999988876553
No 299
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.20 E-value=0.44 Score=48.20 Aligned_cols=141 Identities=20% Similarity=0.321 Sum_probs=86.1
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhh--hhhhhcH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVK--CCDEVDT 327 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~--~~d~~~~ 327 (493)
.-++| +|-+++.--.. ...++++|++.....++. +++.+.++.+ .+++..|.-|-+|....+-. .++.+++
T Consensus 35 ii~vg~d~as~~Yv~~k-~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p 113 (282)
T PRK14166 35 VILVGDNPASQTYVKSK-AKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS 113 (282)
T ss_pred EEEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence 44556 44444444333 446789999987666653 3577777776 56789999999997532211 1111211
Q ss_pred HHHHhcceeeEEEeccCCeEE-EE-----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHH
Q 011136 328 VAKSIGAVNCIIRRQSDGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGA 400 (493)
Q Consensus 328 ~A~~igAvNti~~~~~~g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L 400 (493)
.+.+-..+.+ +-|+++ |. -.-..|++.-|+.. +.+++||+++|+|-+. .|+-++.-|
T Consensus 114 -~KDVDGl~~~----N~g~l~~g~~~~~~PcTp~avi~lL~~y-----------~i~l~Gk~vvVvGrS~iVGkPla~lL 177 (282)
T PRK14166 114 -SKDVDGFHPI----NVGYLNLGLESGFLPCTPLGVMKLLKAY-----------EIDLEGKDAVIIGASNIVGRPMATML 177 (282)
T ss_pred -ccCcccCChh----hhHHHhcCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHH
Confidence 1111111111 012221 21 11256666666653 2678999999999988 999999999
Q ss_pred HhCCCeEEEEeCC
Q 011136 401 KAKGARVVIANRT 413 (493)
Q Consensus 401 ~~~g~~i~v~~R~ 413 (493)
.+.|+.|+++.+.
T Consensus 178 ~~~~atVt~chs~ 190 (282)
T PRK14166 178 LNAGATVSVCHIK 190 (282)
T ss_pred HHCCCEEEEeCCC
Confidence 9999999988764
No 300
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.19 E-value=0.1 Score=57.21 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=37.6
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
-++|.|||+|-||+.++..|+..|++|++++|+.++.++..+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~ 46 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIA 46 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 367999999999999999999999999999999998876533
No 301
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.17 E-value=0.11 Score=52.97 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=38.3
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
++|.|||+|-+|.+++..|+..|++|++++|+.++.+++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 579999999999999999999999999999999888877654
No 302
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.17 E-value=0.1 Score=57.64 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=41.2
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+||.++|.|+ |+.|++++..|++.|++|+++.|+.++++.+++.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~ 125 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVK 125 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhh
Confidence 5789999998 889999999999999999999999999988877554
No 303
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.15 E-value=0.23 Score=50.75 Aligned_cols=35 Identities=40% Similarity=0.499 Sum_probs=32.3
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
+.++.|||+|-+|++++..|...|++|++++|+..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 56899999999999999999999999999999853
No 304
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.15 E-value=0.12 Score=50.40 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=38.9
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+|+++|.|+ |+.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~ 47 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEIN 47 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 578999998 679999999999999999999999888877776543
No 305
>PRK07904 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.12 Score=50.94 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=38.7
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCC-CeEEEEeCChHH-HHHHHHHhhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYGE-SLTFLRLMSW 426 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g-~~i~v~~R~~~~-a~~la~~~~~ 426 (493)
+++++|.|+ ||.|++++..|++.| ++|+++.|+.++ .+++++++..
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~ 56 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA 56 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh
Confidence 678999988 789999999999986 699999999886 7777766543
No 306
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.11 E-value=0.7 Score=46.81 Aligned_cols=122 Identities=24% Similarity=0.340 Sum_probs=78.9
Q ss_pred HHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec----
Q 011136 272 YNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ---- 342 (493)
Q Consensus 272 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~---- 342 (493)
-...++++|++.....++- +++.+.++.+ .++...|.-|-.|.-.. +|+ -+.+.+++.-.--+
T Consensus 52 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~----i~~----~~i~~~I~p~KDVDGl~p 123 (284)
T PRK14170 52 KQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEH----ISE----EKVIDTISYDKDVDGFHP 123 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCC----CCH----HHHHhccCcccCcccCCh
Confidence 3556889999887666654 3577777777 56789999999997532 221 12223333221110
Q ss_pred -cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeC
Q 011136 343 -SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (493)
Q Consensus 343 -~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R 412 (493)
+-|+++ |. -.--.|++.-|+.. +.+++||+|+|+|-+. .|+-++.-|.+.|+.|+++..
T Consensus 124 ~N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs 189 (284)
T PRK14170 124 VNVGNLFIGKDSFVPCTPAGIIELIKST-----------GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHS 189 (284)
T ss_pred hhhhHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 012221 11 11156677766642 2678999999999988 899999999999999988764
No 307
>PRK06182 short chain dehydrogenase; Validated
Probab=94.09 E-value=0.11 Score=51.27 Aligned_cols=41 Identities=34% Similarity=0.323 Sum_probs=36.8
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL 421 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la 421 (493)
+++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA 44 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 678999997 88999999999999999999999988876664
No 308
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.08 E-value=0.6 Score=47.61 Aligned_cols=140 Identities=16% Similarity=0.258 Sum_probs=85.4
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT 327 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~ 327 (493)
.-++| +|-+++.- ..-...++++|++.....++- +++.+.++.+ .+++..|.-|-+|....+ ...++.+++
T Consensus 36 iI~vg~d~as~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p 114 (297)
T PRK14167 36 TVLMSDDPASETYV-SMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDP 114 (297)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCc
Confidence 34556 33333333 233567899999987766664 3677777777 567899999999975322 112222222
Q ss_pred HHHHhcceeeEEEeccCCeEE-EEe----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136 328 VAKSIGAVNCIIRRQSDGKLF-GYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK 401 (493)
Q Consensus 328 ~A~~igAvNti~~~~~~g~l~-G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~ 401 (493)
. +.+-..+.. +-|+++ |.+ .-..|++.-|+.. +.+++||+|+|+|.+. .|+-++.-|.
T Consensus 115 ~-KDVDGl~~~----n~g~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~ 178 (297)
T PRK14167 115 A-KDVDGFHPE----NVGRLVAGDARFKPCTPHGIQKLLAAA-----------GVDTEGADVVVVGRSDIVGKPMANLLI 178 (297)
T ss_pred c-cCcccCChh----hhHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCcccHHHHHHHHh
Confidence 1 111122111 012221 211 2256777776652 2678999999999988 8999999988
Q ss_pred hC----CCeEEEEeC
Q 011136 402 AK----GARVVIANR 412 (493)
Q Consensus 402 ~~----g~~i~v~~R 412 (493)
+. ++.|+++..
T Consensus 179 ~~~~~~~aTVtvchs 193 (297)
T PRK14167 179 QKADGGNATVTVCHS 193 (297)
T ss_pred cCccCCCCEEEEeCC
Confidence 77 678888754
No 309
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.08 E-value=0.12 Score=50.65 Aligned_cols=43 Identities=30% Similarity=0.319 Sum_probs=38.0
Q ss_pred EEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 383 ~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELK 45 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 6899987 779999999999999999999999988888777654
No 310
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.07 E-value=2 Score=43.59 Aligned_cols=122 Identities=15% Similarity=0.227 Sum_probs=78.3
Q ss_pred HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc------------------ccchhHHHh
Q 011136 69 IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV------------------AREFNDSIR 130 (493)
Q Consensus 69 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~------------------~~~~~~~l~ 130 (493)
++.+.+...+|+++...+ | ++.....+..+..++.|+..|-||-.. .++..+.+.
T Consensus 70 ~~~I~~a~~~Pv~~D~d~----G---g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~ 142 (285)
T TIGR02320 70 VEFMFDVTTKPIILDGDT----G---GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIR 142 (285)
T ss_pred HHHHHhhcCCCEEEecCC----C---CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHH
Confidence 444556678999998854 4 356667778888899999999997642 122233343
Q ss_pred h---cCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc--CCCCEE
Q 011136 131 G---KKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH--SQVPII 197 (493)
Q Consensus 131 ~---~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~l~~~~~~--~~~PlI 197 (493)
+ ++.+.--+|...-| +-..-..++.+++.+...+.|||++=+-....+.++..++.+-.+. .+.|++
T Consensus 143 Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 143 AGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV 215 (285)
T ss_pred HHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence 2 22222123434333 2222247788888999999999998776556888888777765542 245774
No 311
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=94.04 E-value=0.14 Score=49.34 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=40.1
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++++++|.|+ |+.|++++..|.+.|+.|.+..|+.++.+++.+.+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~ 50 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL 50 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence 45789999996 88999999999999999999999998888877654
No 312
>PRK06940 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.12 Score=51.49 Aligned_cols=44 Identities=30% Similarity=0.452 Sum_probs=38.1
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+|.++|-|+||.|++++..|. .|++|++++|+.++.+++.+.+.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~ 45 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLR 45 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHH
Confidence 467899999999999999996 79999999999888877776654
No 313
>PRK07102 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.13 Score=49.77 Aligned_cols=44 Identities=27% Similarity=0.299 Sum_probs=38.6
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+.+.+.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~ 46 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLR 46 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH
Confidence 57999996 889999999999999999999999988887776543
No 314
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.01 E-value=0.19 Score=52.61 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=32.5
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESL 418 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~ 418 (493)
+++.|||.|-+|.+++.+|.+.|.++.+++|+.++.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~ 37 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQ 37 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHH
Confidence 3689999999999999999999998888998876643
No 315
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.99 E-value=0.45 Score=48.39 Aligned_cols=44 Identities=27% Similarity=0.219 Sum_probs=37.5
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhh
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~ 425 (493)
+++.|+|+|-+|..+++.++..|. +|++++++.++++..+.++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~ 47 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIA 47 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHH
Confidence 579999999999999999998876 99999999988776655443
No 316
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.98 E-value=0.12 Score=51.30 Aligned_cols=43 Identities=37% Similarity=0.453 Sum_probs=38.2
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
+++++|.|+ ||.|++++..|++.|++|+++.|+.++.+.+.+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~ 47 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL 47 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh
Confidence 578999998 8899999999999999999999999888777654
No 317
>PRK06841 short chain dehydrogenase; Provisional
Probab=93.98 E-value=0.13 Score=49.94 Aligned_cols=40 Identities=43% Similarity=0.567 Sum_probs=35.5
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES 417 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a 417 (493)
++++|+++|.|+ ||.|++++..|++.|++|++++|+.+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~ 52 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA 52 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 467899999997 8899999999999999999999987653
No 318
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.93 E-value=0.14 Score=51.92 Aligned_cols=38 Identities=29% Similarity=0.279 Sum_probs=35.2
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT 419 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~ 419 (493)
++|.|||+|-||.+++..|+..|++|++++++.++.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 67999999999999999999999999999999988764
No 319
>PRK09291 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.15 Score=49.69 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=38.6
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++++||.|+ ||.|++++..|++.|++|+++.|+.++.+++.+...
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 47 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAA 47 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 468999998 789999999999999999999999888877765443
No 320
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=93.92 E-value=0.32 Score=48.27 Aligned_cols=103 Identities=23% Similarity=0.105 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEE--------EeCChHHHHHHHHHhh
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI--------ANRTYGESLTFLRLMS 425 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v--------~~R~~~~a~~la~~~~ 425 (493)
+.|...+++..+...+ ..++++++++|-|.|.+|..++..|.+.|++|+. +|.+--..++|.+...
T Consensus 11 g~GV~~~~~~~~~~~~------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~ 84 (244)
T PF00208_consen 11 GYGVAYAIEAALEHLG------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKE 84 (244)
T ss_dssp HHHHHHHHHHHHHHTT------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHH
Confidence 5677777766554211 1358899999999999999999999999986544 3555445555554322
Q ss_pred hhh--hcccc---cceEEEEeecccccCCceEEEEeccccCCc
Q 011136 426 WLL--LNTLL---FDSVIVIRILLFTWHLKFFIAANIIHLGNH 463 (493)
Q Consensus 426 ~~~--~~~~~---~~~~~v~~~l~~~~~~~~~i~~n~tplG~~ 463 (493)
... +.... .+....+++-++-|..+.+|++|| .++..
T Consensus 85 ~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~ 126 (244)
T PF00208_consen 85 ERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNV 126 (244)
T ss_dssp HHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTS
T ss_pred HhCCcccccccccccceeEeccccccccccccEEEEc-CCCCe
Confidence 111 11111 112334443334566788999988 55444
No 321
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.91 E-value=0.52 Score=48.04 Aligned_cols=140 Identities=22% Similarity=0.264 Sum_probs=84.4
Q ss_pred EEeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136 256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT 327 (493)
Q Consensus 256 ~~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~ 327 (493)
.-++|+ |-+++.- ..--.+++++|++..-..++. +++.+.++.+ .+++..|.-|-.|.-..+ ...++.+++
T Consensus 37 iI~vgdd~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p 115 (297)
T PRK14186 37 VLRVGDDPASAVYV-RNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDP 115 (297)
T ss_pred EEEeCCChHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence 345563 3333322 233556889999887555542 3677777777 567899999999974322 112222221
Q ss_pred HHHHhcceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136 328 VAKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK 401 (493)
Q Consensus 328 ~A~~igAvNti~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~ 401 (493)
. +.+-..+..- -|++. |. -.-..|++.-|+.. +.+++||+|+|||-+. .|+-++.-|.
T Consensus 116 ~-KDVDGl~~~n----~g~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~vvVIGrS~iVGkPla~lL~ 179 (297)
T PRK14186 116 D-KDADGLHPLN----LGRLVKGEPGLRSCTPAGVMRLLRSQ-----------QIDIAGKKAVVVGRSILVGKPLALMLL 179 (297)
T ss_pred c-cCcccCChhh----HHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHH
Confidence 1 1111111110 01111 11 12256777776652 2678999999999988 9999999999
Q ss_pred hCCCeEEEEeC
Q 011136 402 AKGARVVIANR 412 (493)
Q Consensus 402 ~~g~~i~v~~R 412 (493)
+.|+.|+++..
T Consensus 180 ~~~atVtv~hs 190 (297)
T PRK14186 180 AANATVTIAHS 190 (297)
T ss_pred HCCCEEEEeCC
Confidence 99999998854
No 322
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.91 E-value=0.13 Score=49.55 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=37.4
Q ss_pred EEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 383 ~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++++.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~ 44 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL 44 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence 5889987 88999999999999999999999999888877654
No 323
>PRK07806 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.15 Score=49.49 Aligned_cols=46 Identities=28% Similarity=0.327 Sum_probs=37.3
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-GESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~-~~a~~la~~~ 424 (493)
+.+++++|.|+ ||.|++++..|.+.|++|+++.|+. ++.+.+++.+
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l 51 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEI 51 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHH
Confidence 45789999997 8899999999999999999989975 3455555444
No 324
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.86 E-value=0.21 Score=53.07 Aligned_cols=40 Identities=23% Similarity=0.132 Sum_probs=37.3
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++.|||.|-+|..++..|++.|++|++++|+.++.+.|.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhc
Confidence 5889999999999999999999999999999999988764
No 325
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=93.86 E-value=0.15 Score=52.10 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=40.0
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g-~~i~v~~R~~~~a~~la~~~~ 425 (493)
+|.++|.|+ +|.|++++..|++.| ++|+++.|+.++.+++++.+.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~ 49 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG 49 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence 578999998 789999999999999 799999999999888877654
No 326
>PLN02477 glutamate dehydrogenase
Probab=93.86 E-value=0.38 Score=51.25 Aligned_cols=53 Identities=30% Similarity=0.397 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEeCC
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRT 413 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~R~ 413 (493)
+.|...+++..+.. .+.+++|++++|.|.|.+|+.++..|.+.|++|+ |.+.+
T Consensus 186 g~Gv~~~~~~~~~~-------~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 186 GRGVVFATEALLAE-------HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred hHHHHHHHHHHHHH-------cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 77887777765542 1257889999999999999999999999999776 77776
No 327
>PRK06181 short chain dehydrogenase; Provisional
Probab=93.86 E-value=0.15 Score=49.90 Aligned_cols=44 Identities=30% Similarity=0.471 Sum_probs=38.6
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~ 46 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELA 46 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 57999998 889999999999999999999999888887766554
No 328
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.82 E-value=0.33 Score=51.82 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=37.3
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL 421 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la 421 (493)
+++.|||.|-+|..++..|++.|++|+.++|+.++.+.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 5799999999999999999999999999999999988764
No 329
>PRK06114 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.17 Score=49.53 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=39.0
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG-ESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~~~~ 425 (493)
.+++|.++|.|+ ||.|++++..|++.|++|++..|+.+ ..+++.+.+.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~ 54 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIE 54 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH
Confidence 467899999987 68999999999999999999998754 4466655554
No 330
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=93.79 E-value=0.15 Score=49.44 Aligned_cols=36 Identities=42% Similarity=0.607 Sum_probs=32.9
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
+++|+++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 56899999998 7899999999999999999999975
No 331
>PRK07791 short chain dehydrogenase; Provisional
Probab=93.77 E-value=0.15 Score=51.14 Aligned_cols=47 Identities=34% Similarity=0.550 Sum_probs=39.3
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh---------HHHHHHHHHhh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY---------GESLTFLRLMS 425 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~---------~~a~~la~~~~ 425 (493)
+++|.++|.|+ +|.|++++..|++.|++|+++.|+. ++.+++++.+.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~ 60 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIV 60 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHH
Confidence 46889999988 7899999999999999999988876 66777766654
No 332
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.77 E-value=0.77 Score=46.55 Aligned_cols=123 Identities=17% Similarity=0.270 Sum_probs=79.3
Q ss_pred HHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec----
Q 011136 272 YNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ---- 342 (493)
Q Consensus 272 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~---- 342 (493)
--..++++|++.....++- +++.+.++.+ .+++..|+-|-+|... ++|+ -+.+.+++.-.--+
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~----~id~----~~i~~~I~p~KDVDGl~~ 124 (284)
T PRK14193 53 KHRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPK----HLDE----NAVLERIDPAKDADGLHP 124 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----HHHHhcCCcccCccCCCh
Confidence 3567889999987666653 3577777777 5678999999999752 2221 12233333322110
Q ss_pred -cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHh--CCCeEEEEeCC
Q 011136 343 -SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA--KGARVVIANRT 413 (493)
Q Consensus 343 -~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~--~g~~i~v~~R~ 413 (493)
.-|+++ |. -.-..|++.-|+.. +.+++||+++|+|.+. .|+-++.-|.. .++.|+++...
T Consensus 125 ~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~ 193 (284)
T PRK14193 125 TNLGRLVLNEPAPLPCTPRGIVHLLRRY-----------DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG 193 (284)
T ss_pred hhhhHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC
Confidence 012221 11 12256677776642 2678999999999988 89999999987 67899998753
No 333
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.76 E-value=0.14 Score=49.98 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=54.5
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHhhhhhhcccccceEEEE-eecccccCCceEEE
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG-ESLTFLRLMSWLLLNTLLFDSVIVI-RILLFTWHLKFFIA 454 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~~~~~~~~~~~~~~~~~v~-~~l~~~~~~~~~i~ 454 (493)
..+++++|||+|+|.+|..=+..|.+.|++|+|++-+.. ..+.+++.- .++.. ++.+..|-.++.++
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~-----------~i~~~~r~~~~~dl~g~~LV 89 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYG-----------NLKLIKGNYDKEFIKDKHLI 89 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCC-----------CEEEEeCCCChHHhCCCcEE
Confidence 456789999999999998888899999999999988653 223333311 11111 22222333556677
Q ss_pred EeccccCCchhhHhhhhhHHHHhhccc
Q 011136 455 ANIIHLGNHLEWVTAAFNLFFYLTCNS 481 (493)
Q Consensus 455 ~n~tplG~~~~~~~~~~~~~~~~~~~~ 481 (493)
+-||. -...|..++..|+.
T Consensus 90 iaATd--------D~~vN~~I~~~a~~ 108 (223)
T PRK05562 90 VIATD--------DEKLNNKIRKHCDR 108 (223)
T ss_pred EECCC--------CHHHHHHHHHHHHH
Confidence 76664 22456666666654
No 334
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.75 E-value=0.14 Score=50.51 Aligned_cols=46 Identities=24% Similarity=0.266 Sum_probs=37.7
Q ss_pred cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCCh--HHHHHHHHHh
Q 011136 379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY--GESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~--~~a~~la~~~ 424 (493)
+++|.++|.|+ +|.|++++..|++.|++|++++|+. +..+++++.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~ 55 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL 55 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc
Confidence 56899999996 7999999999999999999998764 4456665554
No 335
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.71 E-value=0.81 Score=46.08 Aligned_cols=89 Identities=21% Similarity=0.300 Sum_probs=64.9
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC-----CC--Cc---hhHHHHHHhhCCCcEEEEeccCCCCC
Q 011136 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK-----NF--NP---RENIKTLIKESPVPTLFTYRPIWEGG 91 (493)
Q Consensus 22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-----~~--~~---~~~l~~l~~~~~~PiI~T~R~~~eGG 91 (493)
+.| +.++|.+++.++..+.++.+.+.|+|+||+-+..-. .+ ++ .+.++.+++..++|+++-++..
T Consensus 98 ~~p-vi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---- 172 (289)
T cd02810 98 GQP-LIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---- 172 (289)
T ss_pred CCe-EEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----
Confidence 345 557899999999999998888889999999765321 00 11 2345556666689999888852
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 011136 92 QYDGDENERVDVLRLAMELGADYIDVE 118 (493)
Q Consensus 92 ~~~~~~~~~~~ll~~~l~~~~dyIDIE 118 (493)
.+.++..++.+.+.+.|+|+|.+-
T Consensus 173 ---~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 173 ---FDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred ---CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 245567788888889999999885
No 336
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.71 E-value=4.8 Score=36.81 Aligned_cols=124 Identities=18% Similarity=0.103 Sum_probs=74.1
Q ss_pred HHHHHHHHhhhhcCCCEEEEEecCCCCCCc--h--hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136 36 DKMVVDMGKANASGADLVEIRLDGLKNFNP--R--ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG 111 (493)
Q Consensus 36 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~--~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~ 111 (493)
+...+.++.+.+.|+|+++++......... . +.+..+++..+.|+++.......+ +......+.+.+.|
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~g 84 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA-------AAVDIAAAAARAAG 84 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch-------hhhhHHHHHHHHcC
Confidence 566666777767799999999865443221 1 135556666789999887642211 11111134666778
Q ss_pred CcEEEEEcccc------cchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee
Q 011136 112 ADYIDVELQVA------REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT 175 (493)
Q Consensus 112 ~dyIDIEl~~~------~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~ 175 (493)
+|+|.+-.... .+.++.+...- ++..++...|...... +. .+.+.|+|++.+...
T Consensus 85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~---~~-----~~~~~g~d~i~~~~~ 145 (200)
T cd04722 85 ADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELA---AA-----AAEEAGVDEVGLGNG 145 (200)
T ss_pred CCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccc---hh-----hHHHcCCCEEEEcCC
Confidence 99998876663 33444554321 3678888887532111 11 156779999887654
No 337
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.71 E-value=0.16 Score=50.09 Aligned_cols=37 Identities=27% Similarity=0.259 Sum_probs=32.8
Q ss_pred ccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 378 ~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~ 414 (493)
.+++|.++|.|++ |.|++++..|++.|++|++..|+.
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~ 44 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE 44 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch
Confidence 3568999999996 799999999999999999988874
No 338
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.71 E-value=0.13 Score=52.21 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=36.6
Q ss_pred EEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhh
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLL 428 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~ 428 (493)
+|+|+|+||.|..++..|+..|+ +|+|++-+ ..||+.+++.+...+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~n 66 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRV 66 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHC
Confidence 48999999999999999999999 99986621 246776776666554
No 339
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=93.70 E-value=0.18 Score=49.52 Aligned_cols=48 Identities=31% Similarity=0.428 Sum_probs=38.1
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~~ 425 (493)
++++|+++|.|+ ||.|++++..|.+.|+++++..|+ .++.+.+.+.+.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~ 53 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIK 53 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 467899999997 679999999999999988888884 455555655543
No 340
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.67 E-value=0.29 Score=51.50 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=53.2
Q ss_pred CCEEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136 381 GKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH 459 (493)
Q Consensus 381 ~~~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp 459 (493)
.+++.||| .|.+|.+++.+|.+.|++|++++|+... ...+ .. .+.++++-+||
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~~~~-----------------------~~-~~aDlVilavP 151 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--RAED-----------------------IL-ADAGMVIVSVP 151 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--hHHH-----------------------HH-hcCCEEEEeCc
Confidence 47899999 8999999999999999999999996320 0000 00 23456776777
Q ss_pred cCCchhhHhhhhhHHHHhhccceEeeeccc
Q 011136 460 LGNHLEWVTAAFNLFFYLTCNSYVVMEKTE 489 (493)
Q Consensus 460 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (493)
.....+.+. .......+.+|+|-|-
T Consensus 152 ~~~~~~~~~-----~l~~l~~~~iv~Dv~S 176 (374)
T PRK11199 152 IHLTEEVIA-----RLPPLPEDCILVDLTS 176 (374)
T ss_pred HHHHHHHHH-----HHhCCCCCcEEEECCC
Confidence 665544442 2333456889999764
No 341
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=93.66 E-value=0.14 Score=52.40 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=41.3
Q ss_pred cccCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++||.+||-|+ .|.|++++..|++.|++|++ .|+.++.++++....
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~ 55 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLR 55 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhh
Confidence 4588999999999 99999999999999999988 788888777765443
No 342
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=93.65 E-value=0.17 Score=54.25 Aligned_cols=83 Identities=13% Similarity=-0.051 Sum_probs=55.8
Q ss_pred EEEEEecchHHHHHHH--HHH----hCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 383 LFVVIGAGGAGKALAY--GAK----AKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 383 ~vlvlGaGGaara~~~--~L~----~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
++.|||+|.+|.+.+. .++ ..|.+|.++++++++++.................++.+-.++.+.. .+.+++++
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal-~~AD~Vi~ 80 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREAL-DGADFVIN 80 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh-cCCCEEEE
Confidence 6899999998887555 454 2345999999999999888776543321111123555555555555 67889999
Q ss_pred ccccCCchhh
Q 011136 457 IIHLGNHLEW 466 (493)
Q Consensus 457 ~tplG~~~~~ 466 (493)
++|.|-.+..
T Consensus 81 ai~~~~~~~~ 90 (423)
T cd05297 81 TIQVGGHEYT 90 (423)
T ss_pred eeEecCccch
Confidence 9998766443
No 343
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=93.61 E-value=0.17 Score=49.41 Aligned_cols=46 Identities=39% Similarity=0.549 Sum_probs=37.7
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
.+++|+++|.|+ ||.|++++..|++.|++|++++|+. ..+++.+.+
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~ 51 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAEL 51 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-HHHHHHHHH
Confidence 467899999998 7799999999999999999999985 344555444
No 344
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.59 E-value=0.17 Score=49.24 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=37.3
Q ss_pred EEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 383 ~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++|.|+ ||.|++++..|.+.|++|++++|+.++++.+.+.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 44 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL 44 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence 6899997 88999999999999999999999999888876654
No 345
>PRK06198 short chain dehydrogenase; Provisional
Probab=93.56 E-value=0.16 Score=49.57 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=39.5
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGAR-VVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~-i~v~~R~~~~a~~la~~~ 424 (493)
+++|+++|.|+ ||.|+.++..|.+.|++ |++++|+.++.+.+.+.+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l 51 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAEL 51 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHH
Confidence 56889999998 78999999999999996 999999988777666554
No 346
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.56 E-value=0.38 Score=47.91 Aligned_cols=75 Identities=16% Similarity=0.053 Sum_probs=53.4
Q ss_pred EEEEec-chHHHHHHHHHHhCC----CeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136 384 FVVIGA-GGAGKALAYGAKAKG----ARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII 458 (493)
Q Consensus 384 vlvlGa-GGaara~~~~L~~~g----~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t 458 (493)
+.|+|+ |.+|..+++.|+..| .+|++++++.++++..+.++....... ..-+++.-.++++.. .+.++++.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~-~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAF-KDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHh-CCCCEEEECC
Confidence 469999 779999999999888 389999999999888888766544222 122555444434444 6677777765
Q ss_pred cc
Q 011136 459 HL 460 (493)
Q Consensus 459 pl 460 (493)
..
T Consensus 79 ~~ 80 (263)
T cd00650 79 GV 80 (263)
T ss_pred CC
Confidence 54
No 347
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=93.55 E-value=0.17 Score=49.01 Aligned_cols=45 Identities=31% Similarity=0.405 Sum_probs=39.0
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
+|++||.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+.
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 46 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVAT 46 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 367999996 789999999999999999999999988888776553
No 348
>PRK07832 short chain dehydrogenase; Provisional
Probab=93.54 E-value=0.17 Score=50.01 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=37.7
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~ 45 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADAR 45 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 46899987 789999999999999999999999888777766554
No 349
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.53 E-value=0.42 Score=49.16 Aligned_cols=33 Identities=33% Similarity=0.398 Sum_probs=30.6
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
.++.|||+|.+|.+++..|.+.|++|++++|+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 369999999999999999999999999999975
No 350
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.53 E-value=1.3 Score=44.99 Aligned_cols=122 Identities=20% Similarity=0.314 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec----
Q 011136 272 YNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ---- 342 (493)
Q Consensus 272 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~---- 342 (493)
-...++++|++.....++- +++.+.++.+ .++...|+-|-.|.... +|+ -+.+.+++.-.--+
T Consensus 52 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~----i~~----~~i~~~I~p~KDVDGl~~ 123 (293)
T PRK14185 52 KVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKH----ISE----QKVIEAIDYRKDVDGFHP 123 (293)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCC----CCH----HHHHhccCcccCcCCCCH
Confidence 3567899999987655553 3577777777 56789999999997532 221 11222222221110
Q ss_pred -cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhC----CCeEEEEe
Q 011136 343 -SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK----GARVVIAN 411 (493)
Q Consensus 343 -~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~----g~~i~v~~ 411 (493)
+-|+++ |. -.-..|++.-|+.. +.+++||+|+|||-+. .|+-++.-|.+. ++.|+++.
T Consensus 124 ~N~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch 192 (293)
T PRK14185 124 INVGRMSIGLPCFVSATPNGILELLKRY-----------HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCH 192 (293)
T ss_pred hhHHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEec
Confidence 012222 11 11256667766653 2678999999999988 999999999887 57899885
Q ss_pred C
Q 011136 412 R 412 (493)
Q Consensus 412 R 412 (493)
.
T Consensus 193 s 193 (293)
T PRK14185 193 S 193 (293)
T ss_pred C
Confidence 4
No 351
>PRK06398 aldose dehydrogenase; Validated
Probab=93.50 E-value=0.11 Score=51.07 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=34.4
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE 416 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~ 416 (493)
++++|++||.|+ ||.|++++..|.+.|++|++++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~ 42 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS 42 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 356899999997 789999999999999999999998654
No 352
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.49 E-value=2.8 Score=40.47 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=69.3
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 011136 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGAD 113 (493)
Q Consensus 34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~d 113 (493)
+..+...-.+.+.+.|+.++|+ +. .+.++.+++...+|++.-+|..-++...-.+ .+.+.++.+.+.|++
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~--~~------~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig--~~~~~~~~a~~aGad 94 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRA--NG------VEDIRAIRARVDLPIIGLIKRDYPDSEVYIT--PTIEEVDALAAAGAD 94 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEc--CC------HHHHHHHHHhCCCCEEEEEecCCCCCCceeC--CCHHHHHHHHHcCCC
Confidence 4445566666677789999885 22 2456667666789998766543222111111 134566888889999
Q ss_pred EEEEEccc---cc-chhHHHh-hcCCC-CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136 114 YIDVELQV---AR-EFNDSIR-GKKPE-KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (493)
Q Consensus 114 yIDIEl~~---~~-~~~~~l~-~~~~~-~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi 172 (493)
+|=++... ++ +....+. ..++. ...+++..| |+ ++ ..++.+.|+|++++
T Consensus 95 ~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~----t~--~e----a~~a~~~G~d~i~~ 149 (219)
T cd04729 95 IIALDATDRPRPDGETLAELIKRIHEEYNCLLMADIS----TL--EE----ALNAAKLGFDIIGT 149 (219)
T ss_pred EEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECC----CH--HH----HHHHHHcCCCEEEc
Confidence 98776543 22 1222333 22222 367777655 22 23 36677789999875
No 353
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.48 E-value=0.42 Score=48.93 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=38.7
Q ss_pred EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhh
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWL 427 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~ 427 (493)
++.|||+|.+|.++++.|+..|. +|.+++|+.++++..+.++...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~ 48 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG 48 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc
Confidence 58999999999999999999994 8999999999888766655543
No 354
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=93.45 E-value=0.46 Score=46.57 Aligned_cols=145 Identities=19% Similarity=0.144 Sum_probs=86.2
Q ss_pred CCCCcEEEEeecCC----CHHHH-----HHHHHhhhhcCCCEEEEEecC---CCCCCc--hhHHHHHHh---hCCCcEEE
Q 011136 20 RKNPTLICVPIMGE----SVDKM-----VVDMGKANASGADLVEIRLDG---LKNFNP--RENIKTLIK---ESPVPTLF 82 (493)
Q Consensus 20 ~~~~~~Icv~l~~~----~~~e~-----~~~~~~~~~~~aD~vElRlD~---l~~~~~--~~~l~~l~~---~~~~PiI~ 82 (493)
....+.+|+.+..+ +.+.- ..+++++.+.|||.|.+-+++ ..+... .+.++.+.+ ...+|+|+
T Consensus 51 ~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIl 130 (236)
T PF01791_consen 51 AGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVIL 130 (236)
T ss_dssp TTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred hccccccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 33344677666554 56666 788999999999999999987 322111 233444443 34788887
Q ss_pred EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcc-------cccchhHHHhhc--CCCCcEEEEEcccCCCCCCHH
Q 011136 83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ-------VAREFNDSIRGK--KPEKCKVIVSSHNYQYTPSVE 153 (493)
Q Consensus 83 T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~-------~~~~~~~~l~~~--~~~~~kiI~S~H~f~~tp~~~ 153 (493)
-.-...+.-.-...++.-....+.+.++|+|+|-.+.. .+.+.+.++... .+++++|++| +-++.+
T Consensus 131 E~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~s-----GGi~~~ 205 (236)
T PF01791_consen 131 EPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKAS-----GGIDAE 205 (236)
T ss_dssp EECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEE-----SSSSHH
T ss_pred EEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEe-----CCCChH
Confidence 64432221110112233455677788899999999877 344455555531 2367888887 344566
Q ss_pred HHHHHHHHHH---HcCCCE
Q 011136 154 DLSNLVARIQ---ASGADI 169 (493)
Q Consensus 154 el~~~~~~~~---~~gaDI 169 (493)
+....++.+. +.|||.
T Consensus 206 ~~~~~l~~a~~~i~aGa~~ 224 (236)
T PF01791_consen 206 DFLRTLEDALEFIEAGADR 224 (236)
T ss_dssp HHHHSHHHHHHHHHTTHSE
T ss_pred HHHHHHHHHHHHHHcCChh
Confidence 6666666655 888876
No 355
>PRK08223 hypothetical protein; Validated
Probab=93.43 E-value=0.092 Score=53.24 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=31.1
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR 412 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R 412 (493)
+++++|+|+|+||.|..++.+|+..|+ +|++++.
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 567899999999999999999999999 9998764
No 356
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.36 E-value=0.086 Score=47.37 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=28.4
Q ss_pred EEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~ 413 (493)
+|+|+|+||.|..++..|...|+ ++++++.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999999 99998754
No 357
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.35 E-value=0.42 Score=46.26 Aligned_cols=93 Identities=19% Similarity=0.362 Sum_probs=62.5
Q ss_pred cCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---------CCCC---Cc---hhHHHHHHhhCCCcEEE
Q 011136 18 GMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---------LKNF---NP---RENIKTLIKESPVPTLF 82 (493)
Q Consensus 18 ~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~---------l~~~---~~---~~~l~~l~~~~~~PiI~ 82 (493)
.-..+.|.+ ++|.+.+.+++.+.++.+.+.|+|.|||-+-. +... ++ .+.++.+++....|+.+
T Consensus 50 ~~~~~~p~~-~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~v 128 (231)
T cd02801 50 RNPEERPLI-VQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTV 128 (231)
T ss_pred cCccCCCEE-EEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 345555555 79999999999999999878899999997643 1110 11 23455666555678777
Q ss_pred EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 011136 83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117 (493)
Q Consensus 83 T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDI 117 (493)
-+|... ... ++-.++.+...+.|+++|.|
T Consensus 129 k~r~~~-----~~~-~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 129 KIRLGW-----DDE-EETLELAKALEDAGASALTV 157 (231)
T ss_pred EEeecc-----CCc-hHHHHHHHHHHHhCCCEEEE
Confidence 777421 111 35666777777789999977
No 358
>PRK05599 hypothetical protein; Provisional
Probab=93.34 E-value=0.18 Score=49.22 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=38.0
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
+.++|.|+ +|.|++++..|++ |.+|++++|+.++++++++.+..
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~~Vil~~r~~~~~~~~~~~l~~ 45 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GEDVVLAARRPEAAQGLASDLRQ 45 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHh
Confidence 35889988 7799999999984 89999999999999999887754
No 359
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.31 E-value=0.13 Score=40.45 Aligned_cols=29 Identities=38% Similarity=0.500 Sum_probs=26.4
Q ss_pred EEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 386 VIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 386 vlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
|||+|-+|.++++.|++.|++|+|+.|..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999875
No 360
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.30 E-value=2.3 Score=40.26 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=66.1
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---CCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 011136 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---LKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER 100 (493)
Q Consensus 25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~---l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~ 100 (493)
+|..+|..-|..++..+++.+.+.|+|++++|+=- .+.... .+.++.+++..+.|+.+++-.. +...
T Consensus 1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~--------d~~~- 71 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVE--------NPER- 71 (211)
T ss_pred CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeC--------CHHH-
Confidence 35678888999999999999988999999998622 121111 2456666654456765555432 1122
Q ss_pred HHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcc
Q 011136 101 VDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH 144 (493)
Q Consensus 101 ~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H 144 (493)
.++.+.+.|+|+|-|=....+...+.+...++.+.+++++.|
T Consensus 72 --~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~ 113 (211)
T cd00429 72 --YIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALN 113 (211)
T ss_pred --HHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEec
Confidence 355666888998755222222222222222345778888876
No 361
>PRK08264 short chain dehydrogenase; Validated
Probab=93.30 E-value=0.15 Score=49.07 Aligned_cols=41 Identities=34% Similarity=0.476 Sum_probs=36.1
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCC-eEEEEeCChHHHHH
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYGESLT 419 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~-~i~v~~R~~~~a~~ 419 (493)
+.+++++|.|+ |+.|++++..|.+.|+ +|+++.|+.++.++
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~ 46 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD 46 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence 45789999996 8899999999999999 99999999877654
No 362
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.28 E-value=0.18 Score=55.49 Aligned_cols=93 Identities=16% Similarity=0.042 Sum_probs=61.0
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.||++.|+|.|.+|+.++..|...|++|+.++|+..... +..++.. . .++++-+ ++.++++.
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~--~~~~g~~-----------~-~~l~ell-~~aDiV~l 200 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER--AAQLGVE-----------L-VSLDELL-ARADFITL 200 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH--HHhcCCE-----------E-EcHHHHH-hhCCEEEE
Confidence 457799999999999999999999999999999999643221 1222111 1 1344444 55678888
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVME 486 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
.+|+.-.-..+.. -..|..+-++.++++
T Consensus 201 ~lP~t~~t~~li~--~~~l~~mk~ga~lIN 228 (526)
T PRK13581 201 HTPLTPETRGLIG--AEELAKMKPGVRIIN 228 (526)
T ss_pred ccCCChHhhcCcC--HHHHhcCCCCeEEEE
Confidence 8887655444432 234455445666554
No 363
>PRK06436 glycerate dehydrogenase; Provisional
Probab=93.27 E-value=0.14 Score=52.33 Aligned_cols=38 Identities=34% Similarity=0.496 Sum_probs=34.5
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
..+.||++.|||.|.+|++++..|+..|++|+.++|+.
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~ 155 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY 155 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 35789999999999999999998888899999999984
No 364
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.24 E-value=0.21 Score=48.41 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=38.4
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v-~~R~~~~a~~la~~~~ 425 (493)
.+++++|.|+ ||.|++++..|.+.|++|++ ..|+.++.+++++.+.
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~ 50 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIE 50 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 4689999998 67999999999999997655 6888888888777654
No 365
>PRK12747 short chain dehydrogenase; Provisional
Probab=93.23 E-value=0.22 Score=48.48 Aligned_cols=46 Identities=30% Similarity=0.353 Sum_probs=37.2
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~ 425 (493)
++|+++|.|+ ||.|++++..|++.|++|.+.. |+.++.++++..+.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~ 50 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ 50 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 4789999997 7899999999999999888864 66677776665543
No 366
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.22 E-value=0.41 Score=49.30 Aligned_cols=66 Identities=24% Similarity=0.097 Sum_probs=48.4
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH-hhhhhhcc-cccceEEEEeeccccc
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL-MSWLLLNT-LLFDSVIVIRILLFTW 447 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~-~~~~~~~~-~~~~~~~v~~~l~~~~ 447 (493)
.++.|||+|.-|.|++..|++.|.+|.++.|+++-.+++-.. -+..+++. .-.++++.-.++.+-.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEAL 69 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHH
Confidence 479999999999999999999999999999999999888764 22223321 2223555555555444
No 367
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.22 E-value=0.33 Score=49.64 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=32.0
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
..+++|+|+|++|...+..|++.|++|+++.|+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~ 39 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY 39 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 35799999999999999999999999999999863
No 368
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=93.18 E-value=0.16 Score=55.87 Aligned_cols=94 Identities=18% Similarity=0.085 Sum_probs=60.2
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.||++.|+|.|.+|++++..|...|++|+.++|..... .+..++... ..++++-+ ++.++++.
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~--~~~~~g~~~-----------~~~l~ell-~~aDvV~l 199 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPE--RAEQLGVEL-----------VDDLDELL-ARADFITV 199 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh--HHHhcCCEE-----------cCCHHHHH-hhCCEEEE
Confidence 45789999999999999999999999999999999863221 112222111 12343333 45677777
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVME 486 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
.+|+.-.-..+.. -..|..+-++.++.+
T Consensus 200 ~lPlt~~T~~li~--~~~l~~mk~ga~lIN 227 (525)
T TIGR01327 200 HTPLTPETRGLIG--AEELAKMKKGVIIVN 227 (525)
T ss_pred ccCCChhhccCcC--HHHHhcCCCCeEEEE
Confidence 7776655444432 234555455666655
No 369
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.17 E-value=0.22 Score=50.56 Aligned_cols=49 Identities=35% Similarity=0.463 Sum_probs=40.2
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~~ 425 (493)
..+++|+++|.|+ ||.|++++..|++.|++|++.+|. .++++++++.+.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~ 58 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIR 58 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHH
Confidence 4578999999998 679999999999999998888874 456667766554
No 370
>PRK07856 short chain dehydrogenase; Provisional
Probab=93.15 E-value=0.16 Score=49.59 Aligned_cols=39 Identities=36% Similarity=0.549 Sum_probs=34.6
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE 416 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~ 416 (493)
.+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~ 42 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE 42 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 356899999997 779999999999999999999998765
No 371
>PRK06523 short chain dehydrogenase; Provisional
Probab=93.14 E-value=0.16 Score=49.62 Aligned_cols=39 Identities=38% Similarity=0.465 Sum_probs=34.9
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE 416 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~ 416 (493)
.+++|++||.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~ 45 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD 45 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh
Confidence 467899999997 789999999999999999999998654
No 372
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.13 E-value=0.12 Score=49.56 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=31.5
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~ 413 (493)
+++.+|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 456899999999999999999999999 89998754
No 373
>PRK06484 short chain dehydrogenase; Validated
Probab=93.12 E-value=0.2 Score=54.50 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=42.2
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
...+|.++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 314 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG 314 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence 346899999987 779999999999999999999999999888887653
No 374
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=93.11 E-value=0.23 Score=48.19 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=38.3
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~ 45 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEIN 45 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 47899996 889999999999999999999999888877776554
No 375
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.10 E-value=0.14 Score=48.00 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=32.4
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
..+++|+|+|||+|-+|--++..|++.|.+|+++-|++.
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 457899999999999999999999999999999999864
No 376
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.09 E-value=0.22 Score=46.29 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=37.2
Q ss_pred ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
.+...+++|+|+|-+|+.++..|..+|+++++.+...++.+++-.
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLES 61 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhc
Confidence 355689999999999999999999999999999999888777644
No 377
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.08 E-value=0.2 Score=54.78 Aligned_cols=47 Identities=28% Similarity=0.122 Sum_probs=40.3
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL 427 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~ 427 (493)
.+.+|+|+|+|.+|.+++..++..|++|++++++.++.+ .++.++..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle-~aeslGA~ 210 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAE-QVESMGAE 210 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCe
Confidence 478999999999999999999999999999999988865 55556543
No 378
>PRK08324 short chain dehydrogenase; Validated
Probab=93.07 E-value=0.22 Score=56.49 Aligned_cols=49 Identities=39% Similarity=0.442 Sum_probs=43.1
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
..+.||+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+++.+.
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~ 467 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELG 467 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHh
Confidence 3467899999995 999999999999999999999999998888777654
No 379
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.06 E-value=0.2 Score=40.33 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=29.6
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
+++|+|+|-.|--++..|++.|.+|+++.|..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 58999999999999999999999999999854
No 380
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.05 E-value=0.98 Score=47.18 Aligned_cols=122 Identities=25% Similarity=0.302 Sum_probs=78.8
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec-----
Q 011136 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ----- 342 (493)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~----- 342 (493)
...++++|++..-..++- +++.+.++.+ .+++..|.-|-.|.... +|+ -+.+.+++.-.--+
T Consensus 125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~----id~----~~i~~aI~P~KDVDGl~p~ 196 (364)
T PLN02616 125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSH----MDE----QNILNAVSIEKDVDGFHPL 196 (364)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCC----CCH----HHHHhccCcccCcccCChh
Confidence 457889999875444443 3677777777 55789999999997532 221 12223333322110
Q ss_pred cCCeEE-EE-e-----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCC
Q 011136 343 SDGKLF-GY-N-----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT 413 (493)
Q Consensus 343 ~~g~l~-G~-N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~ 413 (493)
.-|++. |. + .--.|++.-|+.. +.+++||+|+|||-+. .|+-++.-|.+.|+.|+++...
T Consensus 197 N~G~L~~g~~~~~f~PCTp~avielL~~y-----------~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~ 264 (364)
T PLN02616 197 NIGRLAMRGREPLFVPCTPKGCIELLHRY-----------NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR 264 (364)
T ss_pred hhHHHhcCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC
Confidence 012232 11 1 1256777776653 2678999999999988 9999999999999999988753
No 381
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.04 E-value=0.64 Score=47.61 Aligned_cols=79 Identities=18% Similarity=-0.015 Sum_probs=48.9
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL 460 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl 460 (493)
+++.|||+|-+|..+++.|+..|. +|++++++.+.++..+-++...........+++.-.+.++-=..|+.|++=+||-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag~p~ 81 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGLPR 81 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCCCCC
Confidence 479999999999999999999887 9999999877665443322222111111123433233333223556666666665
No 382
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.04 E-value=0.25 Score=49.96 Aligned_cols=85 Identities=24% Similarity=0.310 Sum_probs=62.7
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEe-ec------c-----
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIR-IL------L----- 444 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~-~l------~----- 444 (493)
.+.||.|+|=|| .|.|+++|+.|+..|++++++.|..++-+.+++++....... +++++. ++ .
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~----~v~~~~~Dvs~~~~~~~~~~~ 84 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE----KVLVLQLDVSDEESVKKFVEW 84 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC----ccEEEeCccCCHHHHHHHHHH
Confidence 456899999999 899999999999999999999998888888888777655321 344443 00 0
Q ss_pred --cccCCceEEEEeccccCCchhhHh
Q 011136 445 --FTWHLKFFIAANIIHLGNHLEWVT 468 (493)
Q Consensus 445 --~~~~~~~~i~~n~tplG~~~~~~~ 468 (493)
.+. .+.++++|--+++. ...+.
T Consensus 85 ~~~~f-g~vDvLVNNAG~~~-~~~~~ 108 (282)
T KOG1205|consen 85 AIRHF-GRVDVLVNNAGISL-VGFLE 108 (282)
T ss_pred HHHhc-CCCCEEEecCcccc-ccccc
Confidence 233 56789999888877 44443
No 383
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.03 E-value=0.58 Score=50.34 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=63.4
Q ss_pred cHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEeCC----------hHHHHHHH
Q 011136 353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRT----------YGESLTFL 421 (493)
Q Consensus 353 D~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~R~----------~~~a~~la 421 (493)
.++|.+.+++..+.. .+.+++|++|+|-|.|-+|..++..|.+.|++|+ |.+.+ .++...+.
T Consensus 216 TG~Gv~~~~~~~l~~-------~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~ 288 (454)
T PTZ00079 216 TGYGLVYFVLEVLKK-------LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLM 288 (454)
T ss_pred cHHHHHHHHHHHHHH-------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHH
Confidence 478888877766543 1367899999999999999999999999999766 87776 55554443
Q ss_pred HHhhh-----hhhcccccceEEEEeecccccCCceEEEEec
Q 011136 422 RLMSW-----LLLNTLLFDSVIVIRILLFTWHLKFFIAANI 457 (493)
Q Consensus 422 ~~~~~-----~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~ 457 (493)
+.-.. ..+... ......+ +-++.|.-+.+|++||
T Consensus 289 ~~k~~~~g~i~~~~~~-~~~a~~~-~~~~~~~~~cDI~iPc 327 (454)
T PTZ00079 289 DLKNVKRGRLKEYAKH-SSTAKYV-PGKKPWEVPCDIAFPC 327 (454)
T ss_pred HHHhhcCCcHHhhhhc-cCCcEEe-CCcCcccCCccEEEec
Confidence 21110 111110 1112222 3457788888999965
No 384
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=93.00 E-value=3.8 Score=39.34 Aligned_cols=136 Identities=16% Similarity=0.069 Sum_probs=86.9
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCC-HHHH
Q 011136 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGD-ENER 100 (493)
Q Consensus 22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~-~~~~ 100 (493)
+.+++|+.+-..|.+++++-+++. ....|+||.=.+++..+.+ +.++.+++.. ++++.+.. .... ...+
T Consensus 2 ~~~~l~~alD~~~~~~~~~~~~~~-~~~~~~vk~g~~l~~~~G~-~~v~~ir~~~--~i~~D~k~------~di~~~~~~ 71 (215)
T PRK13813 2 KDSRIILALDVTDRERALKIAEEL-DDYVDAIKVGWPLVLASGL-GIIEELKRYA--PVIADLKV------ADIPNTNRL 71 (215)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHhc-cccCCEEEEcHHHHHhhCH-HHHHHHHhcC--CEEEEeec------cccHHHHHH
Confidence 568899999999999999988876 3447899999988765543 4577776544 56654442 1122 2222
Q ss_pred HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCC-----CHHHHHHHHHHHHHcCCCEEE
Q 011136 101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTP-----SVEDLSNLVARIQASGADIVK 171 (493)
Q Consensus 101 ~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp-----~~~el~~~~~~~~~~gaDIvK 171 (493)
..+.+.+.|+|++.+=.....+.+..+. ..++.+.++.+-.+- . ++ -.+.+........+.|++..|
T Consensus 72 --~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~-~-~~~~~~~~~~~~~~v~~m~~e~G~~g~~ 144 (215)
T PRK13813 72 --ICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEM-S-HPGALEFIQPHADKLAKLAQEAGAFGVV 144 (215)
T ss_pred --HHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeC-C-CCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence 2266778899999997766544444443 334566777654332 1 22 123345555566678999887
No 385
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.99 E-value=0.54 Score=48.20 Aligned_cols=46 Identities=28% Similarity=0.226 Sum_probs=40.7
Q ss_pred EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL 428 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~ 428 (493)
|+.|||+|.+|.++++.|...|. ++++++++.++++..+.++....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~ 48 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT 48 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh
Confidence 47899999999999999998885 89999999999998888877644
No 386
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.96 E-value=0.21 Score=49.03 Aligned_cols=42 Identities=31% Similarity=0.298 Sum_probs=36.6
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTF 420 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~l 420 (493)
.++++++|+|+ |+.|++++..|.+.|++|+.+.|+.++++.+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 45789999996 8899999999999999999999998876554
No 387
>PRK08226 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.24 Score=48.46 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=35.9
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
+++|+++|.|+ ||.|++++..|.+.|++|++++|+.+ ..++++.
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~ 48 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADE 48 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHH
Confidence 45789999986 78999999999999999999999875 3344333
No 388
>PRK12746 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.26 Score=47.86 Aligned_cols=46 Identities=35% Similarity=0.452 Sum_probs=37.9
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v-~~R~~~~a~~la~~~ 424 (493)
+++++++|.|+ ||.|++++..|.+.|++|.+ ..|+.++.+++.+.+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~ 51 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREI 51 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 45789999996 78999999999999997766 589888777766654
No 389
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.89 E-value=2.1 Score=44.56 Aligned_cols=137 Identities=18% Similarity=0.236 Sum_probs=85.5
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 329 (493)
.-++| +|-+.+.-- .-...++++|++..-..++- +++.+.++.+ .+++..|.-|-.|.... +|+ -
T Consensus 91 iIlvGddpaS~~Yv~-~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~h----id~----~ 161 (345)
T PLN02897 91 VVLVGQQRDSQTYVR-NKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQH----LDE----S 161 (345)
T ss_pred EEEeCCChHHHHHHH-HHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH----H
Confidence 35566 444433332 23456889999887665553 3577777777 56889999999997532 221 1
Q ss_pred HHhcceeeEEEec-----cCCeE-EEEe------ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHH
Q 011136 330 KSIGAVNCIIRRQ-----SDGKL-FGYN------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKAL 396 (493)
Q Consensus 330 ~~igAvNti~~~~-----~~g~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~ 396 (493)
+.+.+++.-.--+ .-|++ .|.+ .--.|++.-|++. +.+++||+++|||-+. .|+-+
T Consensus 162 ~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~-----------~i~l~GK~vvVIGRS~iVGkPl 230 (345)
T PLN02897 162 KILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRS-----------GVEIAGKNAVVIGRSNIVGLPM 230 (345)
T ss_pred HHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccccHHH
Confidence 2233333322110 01222 1111 1246677766653 2678999999999988 89999
Q ss_pred HHHHHhCCCeEEEEeC
Q 011136 397 AYGAKAKGARVVIANR 412 (493)
Q Consensus 397 ~~~L~~~g~~i~v~~R 412 (493)
+.-|.+.|+.|+++..
T Consensus 231 a~LL~~~~ATVTicHs 246 (345)
T PLN02897 231 SLLLQRHDATVSTVHA 246 (345)
T ss_pred HHHHHHCCCEEEEEcC
Confidence 9999999999988875
No 390
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=92.87 E-value=0.18 Score=49.64 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=31.0
Q ss_pred cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
+++|.++|.|+ +|.|++++..|++.|++|++..|+.
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~ 42 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPD 42 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence 46899999997 4999999999999999998886543
No 391
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=92.85 E-value=11 Score=40.91 Aligned_cols=210 Identities=15% Similarity=0.122 Sum_probs=125.5
Q ss_pred CHHHHHHHHHhhhhcCCCEEEE----EecC---CCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136 34 SVDKMVVDMGKANASGADLVEI----RLDG---LKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (493)
Q Consensus 34 ~~~e~~~~~~~~~~~~aD~vEl----RlD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (493)
+.++.+.-++.+.+.|.+.+|. ..|. +..-++.+.++.+++. .+.++-.-+|..+--|...-.++.....++
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence 4455555566666779999999 3332 1112345677777664 356666667865555653445555666788
Q ss_pred HHHHhCCcEEEEEccccc-chh-HHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 011136 106 LAMELGADYIDVELQVAR-EFN-DSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LDI 179 (493)
Q Consensus 106 ~~l~~~~dyIDIEl~~~~-~~~-~~l~~~~~~~~kiI~S~H~f~~tp--~~~el~~~~~~~~~~gaDIvKia~~a--~s~ 179 (493)
.+++.|++.+-|=....+ +.+ ..+..+++.+..+.+.... ...| +.+.+.+..+++.+.|||.+-|+=|+ -+|
T Consensus 103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~-t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P 181 (467)
T PRK14041 103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISY-TVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTP 181 (467)
T ss_pred HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCH
Confidence 999999999888655543 112 2222334455566544432 1134 55678999999999999998887555 457
Q ss_pred hHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136 180 TDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (493)
Q Consensus 180 ~D~~~l~~~~~~-~~~PlIa~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~ 245 (493)
.++.++.+.+++ .+.|+-.- ++--+|..+-+..-.-|.-..=+++.. -+...||++.+++...++
T Consensus 182 ~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~-~g~gagN~atE~lv~~L~ 249 (467)
T PRK14041 182 KRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISP-FSMGTSQPPFESMYYAFR 249 (467)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccc-cCCCCCChhHHHHHHHHH
Confidence 888888877654 35565433 333334444444434444333233332 122346999988877665
No 392
>PRK05855 short chain dehydrogenase; Validated
Probab=92.85 E-value=0.24 Score=54.08 Aligned_cols=48 Identities=31% Similarity=0.439 Sum_probs=42.6
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
..++++++|+|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 360 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIR 360 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 456789999997 899999999999999999999999999888887664
No 393
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.84 E-value=0.2 Score=46.19 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=33.7
Q ss_pred EEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136 384 FVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLT 419 (493)
Q Consensus 384 vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~ 419 (493)
|+|+|| |.+|+.++..|.+.|++|+++.|+.++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 689997 899999999999999999999999998876
No 394
>PLN02712 arogenate dehydrogenase
Probab=92.83 E-value=0.39 Score=54.40 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=32.9
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE 416 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~ 416 (493)
+.+++.|||.|.+|++++.+|.+.|++|++++|+..+
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~ 87 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS 87 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3468999999999999999999999999999998543
No 395
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.80 E-value=0.24 Score=47.91 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=36.6
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~ 424 (493)
+++|+++|.|+ ||.|++++..|.+.|++|++. .|+.++.+.+...+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 50 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL 50 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh
Confidence 45789999996 789999999999999987765 55677777766544
No 396
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.79 E-value=0.24 Score=55.52 Aligned_cols=48 Identities=27% Similarity=0.402 Sum_probs=42.9
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++++.+.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 416 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIR 416 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 467899999997 889999999999999999999999999888877664
No 397
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.79 E-value=0.23 Score=49.08 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=31.0
Q ss_pred cCCCEEEEEe---cchHHHHHHHHHHhCCCeEEEEeCC
Q 011136 379 LAGKLFVVIG---AGGAGKALAYGAKAKGARVVIANRT 413 (493)
Q Consensus 379 l~~~~vlvlG---aGGaara~~~~L~~~g~~i~v~~R~ 413 (493)
+++|.++|-| ++|.|++++..|++.|++|++..|+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~ 41 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVV 41 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence 5689999999 4699999999999999999888775
No 398
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=92.78 E-value=0.26 Score=55.96 Aligned_cols=49 Identities=29% Similarity=0.405 Sum_probs=43.1
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
.++.+|++||.|+ ||.|++++..|.+.|++|++++|+.++.+.+.+.+.
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEIN 459 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4578999999997 789999999999999999999999988888776654
No 399
>PLN02602 lactate dehydrogenase
Probab=92.76 E-value=0.68 Score=48.41 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=42.1
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL 428 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~ 428 (493)
+++.|||+|.+|.++++.|...|. +|.+++++.++++..+.++....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~ 86 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA 86 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh
Confidence 699999999999999999998885 89999999999988888777654
No 400
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=92.74 E-value=2.6 Score=39.71 Aligned_cols=106 Identities=25% Similarity=0.356 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhH---HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011136 36 DKMVVDMGKANASGADLVEIRLDGLKNFNPREN---IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA 112 (493)
Q Consensus 36 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~---l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~ 112 (493)
++....++.+.+.|+++|.+|.-.+.+.+-.+. +..+.+..+.|++++-+ .+.+.+.|+
T Consensus 13 ~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~~------------------~~la~~~g~ 74 (196)
T TIGR00693 13 ADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVNDR------------------VDLALALGA 74 (196)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEECH------------------HHHHHHcCC
Confidence 346667777788999999999743221110112 23333445788887431 245567787
Q ss_pred cEEEEEcc-cccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136 113 DYIDVELQ-VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (493)
Q Consensus 113 dyIDIEl~-~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi 172 (493)
+.|=+... .+....+.+ ...+..|-+|.|+. ++ ..++.+.|+|++++
T Consensus 75 ~GvHl~~~~~~~~~~r~~---~~~~~~ig~s~h~~------~e----~~~a~~~g~dyi~~ 122 (196)
T TIGR00693 75 DGVHLGQDDLPASEARAL---LGPDKIIGVSTHNL------EE----LAEAEAEGADYIGF 122 (196)
T ss_pred CEEecCcccCCHHHHHHh---cCCCCEEEEeCCCH------HH----HHHHhHcCCCEEEE
Confidence 76655322 222222222 23456788999942 23 24566789999997
No 401
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.74 E-value=0.19 Score=49.58 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=35.4
Q ss_pred cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCC---hHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRT---YGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~---~~~a~~la~~~ 424 (493)
+++|.++|.|+ +|.|++++..|++.|++|++..|. .++.+++.+.+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~ 55 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF 55 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc
Confidence 45889999994 699999999999999999887653 44555554433
No 402
>PRK06924 short chain dehydrogenase; Provisional
Probab=92.71 E-value=0.23 Score=48.19 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=33.2
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHH
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-GESLTFL 421 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~-~~a~~la 421 (493)
|+++|.|+ ||.|++++..|++.|++|+++.|+. ++.+++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~ 43 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLA 43 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHH
Confidence 57999996 8899999999999999999999986 4444443
No 403
>PRK08278 short chain dehydrogenase; Provisional
Probab=92.71 E-value=0.27 Score=48.88 Aligned_cols=38 Identities=42% Similarity=0.602 Sum_probs=33.8
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE 416 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~ 416 (493)
+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~ 42 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEP 42 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccccc
Confidence 46789999997 789999999999999999999998653
No 404
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=92.68 E-value=0.65 Score=48.41 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=50.4
Q ss_pred EEEEEecchHHHHHHHHHHhCC--------CeEEEEeC-----ChHHHHHHHHHhhhhh-hccc-ccceEEEEeeccccc
Q 011136 383 LFVVIGAGGAGKALAYGAKAKG--------ARVVIANR-----TYGESLTFLRLMSWLL-LNTL-LFDSVIVIRILLFTW 447 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g--------~~i~v~~R-----~~~~a~~la~~~~~~~-~~~~-~~~~~~v~~~l~~~~ 447 (493)
++.|||+|..|.|++..|++.| .+|.++.| +.+-.+.+.+...... ++.. ..+++++..++++..
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4789999999999999999988 79999999 3333333333211111 1111 123566666665432
Q ss_pred -CCceEEEEeccccCCchhhHhhh
Q 011136 448 -HLKFFIAANIIHLGNHLEWVTAA 470 (493)
Q Consensus 448 -~~~~~i~~n~tplG~~~~~~~~~ 470 (493)
..|..|++ ++...+.+-
T Consensus 81 ~~ADiIIlA------VPs~~i~~v 98 (342)
T TIGR03376 81 KGADILVFV------IPHQFLEGI 98 (342)
T ss_pred hcCCEEEEE------CChHHHHHH
Confidence 23555666 666666543
No 405
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=92.67 E-value=0.17 Score=51.15 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=34.2
Q ss_pred EEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 386 VIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 386 vlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
+||.|-||.+++..|.+.|++|+++||+.++.+.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~ 37 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA 37 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 5799999999999999999999999999999888765
No 406
>PRK05650 short chain dehydrogenase; Provisional
Probab=92.66 E-value=0.27 Score=48.47 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=38.3
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++++|.|+ ||.|++++..|.+.|.+|+++.|+.++.+++.+.+.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 45 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLR 45 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 36899987 889999999999999999999999988888776554
No 407
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.63 E-value=0.14 Score=60.25 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=32.5
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~ 413 (493)
..||+|+|||+|.||.++|+.|++.|++|+|+.|.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Confidence 35899999999999999999999999999999875
No 408
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.63 E-value=0.17 Score=59.19 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=32.6
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~ 413 (493)
..+|+|+|||+|.+|.++|+.|+..|++|+|+.+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 46899999999999999999999999999999974
No 409
>PRK07775 short chain dehydrogenase; Provisional
Probab=92.57 E-value=0.33 Score=48.18 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=39.0
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
.+.|.++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~ 54 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKI 54 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45689999997 88999999999999999999999888777665544
No 410
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=92.56 E-value=4.6 Score=39.77 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=84.0
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC----------C--Cc---hhHHHHHHhhCCCcEEEEeccCCC
Q 011136 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN----------F--NP---RENIKTLIKESPVPTLFTYRPIWE 89 (493)
Q Consensus 25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----------~--~~---~~~l~~l~~~~~~PiI~T~R~~~e 89 (493)
.+.+.+.+.|.++...-++.+ +.++|.||+-.-+=.. + ++ .+.++.++ ...+|+.+-+|...
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~- 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK-ELNKPIFVKIRGNC- 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH-cCCCcEEEEeCCCC-
Confidence 466899999999999988876 5689999997654110 0 22 12334444 45789999999621
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc------chhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHH
Q 011136 90 GGQYDGDENERVDVLRLAMELGADYIDVELQVAR------EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQ 163 (493)
Q Consensus 90 GG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~------~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~ 163 (493)
++....++.+.+.+.|+++|.|+-..+- +.++++... -+...||++==-+ +.++..+.++
T Consensus 146 ------~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~-~~~ipIIgNGgI~----s~eda~e~l~--- 211 (231)
T TIGR00736 146 ------IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEE-FNDKIIIGNNSID----DIESAKEMLK--- 211 (231)
T ss_pred ------CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHh-cCCCcEEEECCcC----CHHHHHHHHH---
Confidence 2245667777888899999999855432 234444332 1236678753212 3444444443
Q ss_pred HcCCCEEEEEee
Q 011136 164 ASGADIVKFATT 175 (493)
Q Consensus 164 ~~gaDIvKia~~ 175 (493)
.|||-|=+++.
T Consensus 212 -~GAd~VmvgR~ 222 (231)
T TIGR00736 212 -AGADFVSVARA 222 (231)
T ss_pred -hCCCeEEEcHh
Confidence 59998877653
No 411
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=92.55 E-value=2.7 Score=45.06 Aligned_cols=134 Identities=17% Similarity=0.168 Sum_probs=80.6
Q ss_pred CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCc-EEEEeccCCCCCCCCCCHHHHH
Q 011136 23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVP-TLFTYRPIWEGGQYDGDENERV 101 (493)
Q Consensus 23 ~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~P-iI~T~R~~~eGG~~~~~~~~~~ 101 (493)
+|++++-+-..++++.+..++.+.+.|+|.+|.-..... ....+.++.+++....+ ++..+|.... | ..
T Consensus 3 ~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~-~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g------~~-- 72 (430)
T PRK07028 3 RPILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIK-SEGMNAIRTLRKNFPDHTIVADMKTMDT-G------AI-- 72 (430)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhhHHHHHHHHHHCCCCEEEEEeeeccc-h------HH--
Confidence 688889999999999999999988899999997221110 01134566666554444 5556776433 2 22
Q ss_pred HHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 011136 102 DVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA 173 (493)
Q Consensus 102 ~ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia 173 (493)
.++.+.+.|+++|-+-...++.....+. ..++.+.+++.-.. .+++. .+.++++.+.|+|++++.
T Consensus 73 -~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~---s~~t~---~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 73 -EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLI---NVPDP---VKRAVELEELGVDYINVH 138 (430)
T ss_pred -HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEec---CCCCH---HHHHHHHHhcCCCEEEEE
Confidence 4557788999998864322211122222 22335667765211 11121 234566777899999875
No 412
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.54 E-value=0.24 Score=48.52 Aligned_cols=37 Identities=30% Similarity=0.488 Sum_probs=32.8
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
.+++|+++|.|+ ||.|++++..|++.|++|++++|+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 356899999987 7899999999999999999999864
No 413
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=92.52 E-value=1.4 Score=43.76 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccC-CCCCCCCCCHHHHHHHHHHHHHh
Q 011136 32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPI-WEGGQYDGDENERVDVLRLAMEL 110 (493)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~l~~ 110 (493)
..+.+++..-++++.+.++|+|=+---++. ..... ...+.++++++-.. +.|. ...........+.+++.
T Consensus 32 ~~~~~~~~~~~~~a~~~~~~~v~~~p~~~~------~~~~~-~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~v~~al~~ 102 (258)
T TIGR01949 32 IKGLVDIRKTVNEVAEGGADAVLLHKGIVR------RGHRG-YGKDVGLIIHLSASTSLSP--DPNDKRIVTTVEDAIRM 102 (258)
T ss_pred CCCcCCHHHHHHHHHhcCCCEEEeCcchhh------hcccc-cCCCCcEEEEEcCCCCCCC--CCCcceeeeeHHHHHHC
Confidence 346677777777777778888876543322 11111 23467887766211 1221 11122344568889999
Q ss_pred CCcEEEEEccccc----chh---HHHhh-cCCCCcEEEEEcc-----cCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 011136 111 GADYIDVELQVAR----EFN---DSIRG-KKPEKCKVIVSSH-----NYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177 (493)
Q Consensus 111 ~~dyIDIEl~~~~----~~~---~~l~~-~~~~~~kiI~S~H-----~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~ 177 (493)
|++.|++...... +.. .++.. .++.+..+|+-.+ ... .+.+++.+..+.+.+.|||++|.-..
T Consensus 103 Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~--~~~~~~~~~~~~a~~~GADyikt~~~-- 178 (258)
T TIGR01949 103 GADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDD--RDPELVAHAARLGAELGADIVKTPYT-- 178 (258)
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCccccc--ccHHHHHHHHHHHHHHCCCEEeccCC--
Confidence 9999999876331 222 33332 2345666666322 211 22334444457777899999997532
Q ss_pred CHhHHHHHHHHhccCCCCEEEE
Q 011136 178 DITDVARVFQITVHSQVPIIGL 199 (493)
Q Consensus 178 s~~D~~~l~~~~~~~~~PlIa~ 199 (493)
.|...+-++......|+.++
T Consensus 179 --~~~~~l~~~~~~~~iPVva~ 198 (258)
T TIGR01949 179 --GDIDSFRDVVKGCPAPVVVA 198 (258)
T ss_pred --CCHHHHHHHHHhCCCcEEEe
Confidence 23333344444457888765
No 414
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.49 E-value=0.32 Score=51.44 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=35.1
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
..+.||++.|||.|.+|+.++..|...|++|.++++..
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~ 149 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR 149 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcc
Confidence 57889999999999999999999999999999999754
No 415
>PRK06484 short chain dehydrogenase; Validated
Probab=92.49 E-value=0.26 Score=53.63 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=40.8
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~ 425 (493)
++|.++|.|+ +|.|++++..|++.|++|+++.|+.++.+++++.++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG 50 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence 4789999987 779999999999999999999999999888877653
No 416
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=92.48 E-value=4 Score=42.08 Aligned_cols=89 Identities=19% Similarity=0.375 Sum_probs=61.6
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC----C------C--Cc---hhHHHHHHhhCCCcEEEEeccCCC
Q 011136 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK----N------F--NP---RENIKTLIKESPVPTLFTYRPIWE 89 (493)
Q Consensus 25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~----~------~--~~---~~~l~~l~~~~~~PiI~T~R~~~e 89 (493)
.+.+.|.+++.+++..-++.+.+.|+|.|||-.-.=. . + ++ .+.++.+++..++|+.+-+|.
T Consensus 66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~--- 142 (321)
T PRK10415 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT--- 142 (321)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc---
Confidence 3458999999999988887766789999999766411 0 0 12 233445555567898888883
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 011136 90 GGQYDGDENERVDVLRLAMELGADYIDVE 118 (493)
Q Consensus 90 GG~~~~~~~~~~~ll~~~l~~~~dyIDIE 118 (493)
| +..+.++..++.+.+.+.|+++|.|.
T Consensus 143 -G-~~~~~~~~~~~a~~le~~G~d~i~vh 169 (321)
T PRK10415 143 -G-WAPEHRNCVEIAQLAEDCGIQALTIH 169 (321)
T ss_pred -c-ccCCcchHHHHHHHHHHhCCCEEEEe
Confidence 3 33333456677778888899999885
No 417
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.48 E-value=0.35 Score=41.36 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=35.4
Q ss_pred EEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
++|+|.|..|+.++..|.+.+.+++++.+++++.+++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~ 41 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG 41 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc
Confidence 68999999999999999995559999999999998887643
No 418
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=92.47 E-value=0.27 Score=49.43 Aligned_cols=76 Identities=17% Similarity=0.052 Sum_probs=52.3
Q ss_pred CCEEEEEecchHHHHHHHHHHhC--CCeE-EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAK--GARV-VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI 457 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~--g~~i-~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~ 457 (493)
..++-|||.|.+|+..+..|... ++++ .|++|+.++++++++.++.... ..++++-. .+.++++.+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~----------~~~~eell-~~~D~Vvi~ 74 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPP----------VVPLDQLA-THADIVVEA 74 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcc----------cCCHHHHh-cCCCEEEEC
Confidence 46899999999999999999863 5665 4899999999999887663210 01121111 334677878
Q ss_pred cccCCchhhH
Q 011136 458 IHLGNHLEWV 467 (493)
Q Consensus 458 tplG~~~~~~ 467 (493)
+|-..+.+..
T Consensus 75 tp~~~h~e~~ 84 (271)
T PRK13302 75 APASVLRAIV 84 (271)
T ss_pred CCcHHHHHHH
Confidence 8876664444
No 419
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.47 E-value=4.6 Score=37.43 Aligned_cols=92 Identities=18% Similarity=0.176 Sum_probs=61.9
Q ss_pred cEEEEeecCCC----HHHHHHHHHhhhhcCCCEEEEEecCCCCCC--c---hhHHHHHHhh--CCCcEEEEeccCCCCCC
Q 011136 24 TLICVPIMGES----VDKMVVDMGKANASGADLVEIRLDGLKNFN--P---RENIKTLIKE--SPVPTLFTYRPIWEGGQ 92 (493)
Q Consensus 24 ~~Icv~l~~~~----~~e~~~~~~~~~~~~aD~vElRlD~l~~~~--~---~~~l~~l~~~--~~~PiI~T~R~~~eGG~ 92 (493)
..+.+-+...+ .++..+.++.+.+.|+|++.+-..+....+ . .+.++.+++. .++|+++..+....
T Consensus 49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--- 125 (201)
T cd00945 49 VPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL--- 125 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC---
Confidence 33445677777 899999999999999999999876543222 1 2345556665 48999988875322
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 011136 93 YDGDENERVDVLRLAMELGADYIDVELQ 120 (493)
Q Consensus 93 ~~~~~~~~~~ll~~~l~~~~dyIDIEl~ 120 (493)
.+.+.-.++.+.+...|+++|..-..
T Consensus 126 --~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 126 --KTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred --CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 34455555555556678999876544
No 420
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=92.46 E-value=9.2 Score=39.71 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=96.3
Q ss_pred cccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEE---------ecC-CCCCCchhHHHHHHhhC-CCcEEE
Q 011136 14 LVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIR---------LDG-LKNFNPRENIKTLIKES-PVPTLF 82 (493)
Q Consensus 14 ~~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElR---------lD~-l~~~~~~~~l~~l~~~~-~~PiI~ 82 (493)
|..-++++..-.+...++. ++.+.-++.+.+.|+|.||+= +++ +...++.+.++.+++.. +..+..
T Consensus 5 i~D~TLRDG~q~~~~~f~~---~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ 81 (333)
T TIGR03217 5 ITDVTLRDGMHAIRHQFTI---EQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAV 81 (333)
T ss_pred EEECCCCCCCcCCCCcCCH---HHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEE
Confidence 3334455555444444444 444444445556799999993 332 23233445566665443 233332
Q ss_pred EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHH
Q 011136 83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVA 160 (493)
Q Consensus 83 T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~ 160 (493)
-++. |.. . .+-++.+.+.|++.|-|=....+ +...+.. .++..+..+.++.-+.... +.+++.+..+
T Consensus 82 ll~p----g~~--~----~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~ 150 (333)
T TIGR03217 82 LLLP----GIG--T----VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMT-PPEKLAEQAK 150 (333)
T ss_pred Eecc----Ccc--C----HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHH
Confidence 3332 211 1 23467888999999887655443 2223332 3445677777665442222 4568999999
Q ss_pred HHHHcCCCEEEEEeec--CCHhHHHHHHHHhcc
Q 011136 161 RIQASGADIVKFATTA--LDITDVARVFQITVH 191 (493)
Q Consensus 161 ~~~~~gaDIvKia~~a--~s~~D~~~l~~~~~~ 191 (493)
++.+.|||.+-++=+. -+|+|+.++.+.+++
T Consensus 151 ~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~ 183 (333)
T TIGR03217 151 LMESYGADCVYIVDSAGAMLPDDVRDRVRALKA 183 (333)
T ss_pred HHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 9999999998877444 458999888887654
No 421
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.46 E-value=0.7 Score=46.98 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=59.5
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcC-CCEEEEEecCC--------CCCCc---hhHHHHHHhhCCCcEEEEeccCCC
Q 011136 22 NPTLICVPIMGESVDKMVVDMGKANASG-ADLVEIRLDGL--------KNFNP---RENIKTLIKESPVPTLFTYRPIWE 89 (493)
Q Consensus 22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~-aD~vElRlD~l--------~~~~~---~~~l~~l~~~~~~PiI~T~R~~~e 89 (493)
+.| +.++|.+.+.++...-++.+.+.| +|+|||=+-.- ...++ .+.++.+++..+.|+.+-++.
T Consensus 91 ~~p-~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~--- 166 (301)
T PRK07259 91 DTP-IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP--- 166 (301)
T ss_pred CCc-EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC---
Confidence 345 557999999999999999888888 99999954110 00011 234555666568899887763
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 011136 90 GGQYDGDENERVDVLRLAMELGADYIDV 117 (493)
Q Consensus 90 GG~~~~~~~~~~~ll~~~l~~~~dyIDI 117 (493)
+.++..++.+.+.+.|+|+|++
T Consensus 167 ------~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 ------NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred ------CchhHHHHHHHHHHcCCCEEEE
Confidence 1134566777778889999976
No 422
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=92.44 E-value=0.41 Score=50.63 Aligned_cols=55 Identities=29% Similarity=0.404 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
+.|...+.+..+.. .+.+++|++|.|-|.|-+|+-++..|.+.|++|+.++-+..
T Consensus 187 g~Gv~~~~~~a~~~-------~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 187 GYGVFYAIREALKA-------LGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred ceehHHHHHHHHHH-------cCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 55665555533221 12448999999999999999999999999998887775554
No 423
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=92.44 E-value=0.46 Score=54.40 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=34.8
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTF 420 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~l 420 (493)
+++.|||+|.+|.+++..|...|. +|++++|+.++.+..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a 44 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELA 44 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHH
Confidence 679999999999999999999993 899999998886654
No 424
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.43 E-value=12 Score=41.87 Aligned_cols=210 Identities=15% Similarity=0.144 Sum_probs=127.8
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136 34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (493)
Q Consensus 34 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (493)
+.++.+.-++.+.+.|.+.+|.- .|. +..-++.+.++.+++.. +.++-.-+|..+--|..+-+++...+.++
T Consensus 24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~ 103 (592)
T PRK09282 24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE 103 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence 34455555556667799999995 553 11224566777777653 57777778865555655556677778899
Q ss_pred HHHHhCCcEEEEEcccccc--hhHHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 011136 106 LAMELGADYIDVELQVARE--FNDSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LDI 179 (493)
Q Consensus 106 ~~l~~~~dyIDIEl~~~~~--~~~~l~~~~~~~~kiI~S~H~f~~tp--~~~el~~~~~~~~~~gaDIvKia~~a--~s~ 179 (493)
.+.+.|++.+-|=....+- ....+..+++.+..+-+... +...| +.+.+.+..+++.+.|||.+-|+=|+ -++
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~-~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P 182 (592)
T PRK09282 104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTIS-YTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTP 182 (592)
T ss_pred HHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEE-eccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCH
Confidence 9999999988876544331 22222223344555543332 22234 56779999999999999998887665 357
Q ss_pred hHHHHHHHHhcc-CCCCEEE--EecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136 180 TDVARVFQITVH-SQVPIIG--LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (493)
Q Consensus 180 ~D~~~l~~~~~~-~~~PlIa--~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~ 245 (493)
.+..++.+.+++ .+.|+=. -++.-++..+-+..-..|....=+++..- ..-.||++.+++...++
T Consensus 183 ~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~-g~~agn~~~e~vv~~L~ 250 (592)
T PRK09282 183 YAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPL-AFGTSQPPTESMVAALK 250 (592)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeecccc-CCCcCCHhHHHHHHHHH
Confidence 888888877554 2455432 34444454554444444543332333321 22347888887776665
No 425
>PRK05693 short chain dehydrogenase; Provisional
Probab=92.42 E-value=0.29 Score=48.45 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=35.3
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL 421 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la 421 (493)
|++||.|+ ||.|++++..|.+.|++|+++.|+.++.+.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA 42 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57899987 88999999999999999999999988776654
No 426
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=92.41 E-value=0.37 Score=49.83 Aligned_cols=92 Identities=18% Similarity=0.098 Sum_probs=63.0
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
..+.||+|.|+|.|..|++++.-|...|+.|.-.+|+..+.+...+.... . .+.++-| .+.++++=
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~------------~d~~~~~-~~sD~ivv 223 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-F------------VDIEELL-ANSDVIVV 223 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-c------------cCHHHHH-hhCCEEEE
Confidence 56789999999999999999999999998888888987766555443332 1 2233334 44556665
Q ss_pred ccccCCchhhHhhhhhHHHHhhccceEee
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVM 485 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~ 485 (493)
+-||.-+-..+ +|..+.-.||..+|.
T Consensus 224 ~~pLt~~T~~l---iNk~~~~~mk~g~vl 249 (336)
T KOG0069|consen 224 NCPLTKETRHL---INKKFIEKMKDGAVL 249 (336)
T ss_pred ecCCCHHHHHH---hhHHHHHhcCCCeEE
Confidence 66666555544 466666666665553
No 427
>PRK06482 short chain dehydrogenase; Provisional
Probab=92.41 E-value=0.31 Score=48.16 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=37.0
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL 423 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~ 423 (493)
|++||.|+ ||.|++++..|.+.|++|+++.|+.++.+.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR 45 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 67999996 8899999999999999999999998887777554
No 428
>PRK06153 hypothetical protein; Provisional
Probab=92.40 E-value=0.13 Score=54.13 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=30.6
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR 412 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R 412 (493)
+++++|+|+|+||.|..++..|++.|+ +|++++-
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 457899999999999999999999999 9998663
No 429
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.40 E-value=0.29 Score=47.81 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=31.6
Q ss_pred cCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCC
Q 011136 379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRT 413 (493)
Q Consensus 379 l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~ 413 (493)
+++|+++|.|++ |.|++++..|++.|++|+++.|+
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 467899999994 79999999999999999999887
No 430
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=92.37 E-value=3.5 Score=40.85 Aligned_cols=121 Identities=18% Similarity=0.262 Sum_probs=75.1
Q ss_pred HHHHHHhhCC-CcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccC
Q 011136 68 NIKTLIKESP-VPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNY 146 (493)
Q Consensus 68 ~l~~l~~~~~-~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f 146 (493)
.++.+++..+ .|+|.-.-+ |... +.+.-.+..+..++.|++.|-||-.. +..+.+...+..+.-||+. -+.
T Consensus 63 ~~~~I~r~~~~~pviaD~~~----G~g~-~~~~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~~a~i~ViaR-td~ 134 (240)
T cd06556 63 HVRAVRRGAPLALIVADLPF----GAYG-APTAAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLTAAAVPVIAH-TGL 134 (240)
T ss_pred HHHHHHhhCCCCCEEEeCCC----CCCc-CHHHHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHHHcCCeEEEE-eCC
Confidence 3555666664 699987743 5433 54566677788888999999999753 2333333322334555542 222
Q ss_pred CCCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEecCC
Q 011136 147 QYTP-----------------SVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGE 203 (493)
Q Consensus 147 ~~tp-----------------~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~l~~~~~~~~~PlIa~~MG~ 203 (493)
+| ..++.++......+.|||.+=+-.. +.++.. ++.+..+.|++.+++|.
T Consensus 135 --~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~---~i~~~~~~P~~~~gag~ 201 (240)
T cd06556 135 --TPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAK---QITEALAIPLAGIGAGS 201 (240)
T ss_pred --chhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHH---HHHHhCCCCEEEEecCc
Confidence 22 2345566666667899999766533 555554 44555688999998887
No 431
>PRK07985 oxidoreductase; Provisional
Probab=92.32 E-value=0.3 Score=49.21 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=37.5
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC--hHHHHHHHHHh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT--YGESLTFLRLM 424 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~--~~~a~~la~~~ 424 (493)
.+++|+++|.|+ ||.|++++..|++.|++|++..|+ .++.+++.+.+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~ 95 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKII 95 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHH
Confidence 367899999998 789999999999999999888764 34555665544
No 432
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=92.26 E-value=2.2 Score=41.70 Aligned_cols=144 Identities=22% Similarity=0.135 Sum_probs=87.5
Q ss_pred HHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH-----HHHHHHHHHhC
Q 011136 37 KMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER-----VDVLRLAMELG 111 (493)
Q Consensus 37 e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~-----~~ll~~~l~~~ 111 (493)
+....++++.+.++++|=+.--++. ..+.....++..+-+.++- +.|+. ..+.+ ..-.+.+++.|
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~~------~~~~~~~~~~~~~~~vi~f-p~g~~---~~~~k~~~~~~~~ve~A~~~G 89 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYVK------PAAELLAGSGVKVGLVIGF-PFGTS---TTEPKGYDQIVAEVEEAIRLG 89 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGHH------HHHHHSTTSTSEEEEEEST-TTSSS---THHHHTCEEEHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhCCCEEEECHHHHH------HHHHHhhccccccceEEEe-CCCCC---ccccccccchHHHHHHHHHcC
Confidence 6777777887889999877654432 2333333222223333432 23332 33455 67788999999
Q ss_pred CcEEEEEccc---cc-------chhHHHh-hcCCCCcEEEEEcccCCCCCCHH---------HHHHHHHHHHHcCCCEEE
Q 011136 112 ADYIDVELQV---AR-------EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVE---------DLSNLVARIQASGADIVK 171 (493)
Q Consensus 112 ~dyIDIEl~~---~~-------~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~---------el~~~~~~~~~~gaDIvK 171 (493)
+|-||+=++. .. +.+.++. ..++.+.++|+- -. |..+ .+....+-+.++|+|++|
T Consensus 90 Ad~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~----l~~~~~~~~~~~~~I~~a~ria~e~GaD~vK 164 (236)
T PF01791_consen 90 ADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PY----LRGEEVADEKKPDLIARAARIAAELGADFVK 164 (236)
T ss_dssp -SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-EC----ECHHHBSSTTHHHHHHHHHHHHHHTT-SEEE
T ss_pred CceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-Ee----cCchhhcccccHHHHHHHHHHHHHhCCCEEE
Confidence 9999997766 21 1233333 345788999986 32 2222 256666667889999999
Q ss_pred EEee---cCCHhHHHHHHHHhccCCCC
Q 011136 172 FATT---ALDITDVARVFQITVHSQVP 195 (493)
Q Consensus 172 ia~~---a~s~~D~~~l~~~~~~~~~P 195 (493)
..+. ..+.+|+..+.+.......|
T Consensus 165 t~tg~~~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 165 TSTGKPVGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp EE-SSSSCSHHHHHHHHHHHHHTHSST
T ss_pred ecCCccccccHHHHHHHHHHHHhcCCC
Confidence 9887 45567777777777766777
No 433
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.25 E-value=0.28 Score=47.97 Aligned_cols=40 Identities=30% Similarity=0.503 Sum_probs=36.9
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL 421 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la 421 (493)
++++|+|+|-.|+.+|..|.+.|.+|+++.++.+++++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~ 40 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFL 40 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHh
Confidence 4689999999999999999999999999999999988843
No 434
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.25 E-value=0.17 Score=57.12 Aligned_cols=35 Identities=34% Similarity=0.383 Sum_probs=32.6
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
.+++|+|||+|.+|.++++.|++.|++|+|+.|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 58899999999999999999999999999999863
No 435
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=92.21 E-value=0.19 Score=50.79 Aligned_cols=33 Identities=33% Similarity=0.398 Sum_probs=28.3
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
.|+|||+|.+|.++|.+|++.|+++.|+.|...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 589999999999999999999999999998543
No 436
>PRK08263 short chain dehydrogenase; Provisional
Probab=92.18 E-value=0.36 Score=47.83 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=38.0
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+.+.+.+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~ 47 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY 47 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc
Confidence 578999986 88999999999999999999999988877766543
No 437
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=92.17 E-value=0.63 Score=49.30 Aligned_cols=121 Identities=24% Similarity=0.368 Sum_probs=74.2
Q ss_pred eecCCccccccHHHHHHHHHHcCCCceeecccc---ccHHHHHHHhcCCCCCeEEEc---cCchHHHhhhhhhhcHHHHH
Q 011136 258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV---DDIAKFFQTYSSNDFAGFSCT---IPHKEAAVKCCDEVDTVAKS 331 (493)
Q Consensus 258 viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~---~~l~~~~~~l~~~~~~G~~VT---~P~K~~v~~~~d~~~~~A~~ 331 (493)
+-|-||.--+. .+|.++ -|++..=..+++ +.+.++++.+ .+.|.|.|+- -|.+..+-..+.+.
T Consensus 97 ~ag~pVmeGKa-~Lfk~f---aGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~~------ 165 (432)
T COG0281 97 LAGKPVMEGKA-VLFKAF---AGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRYR------ 165 (432)
T ss_pred ccCcchhhhHH-HHHHHh---cCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhhc------
Confidence 34455555554 222321 356744444444 3566666666 5789999863 35444443333221
Q ss_pred hcceeeEEEeccCCeEEEEecc--H------HHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhC
Q 011136 332 IGAVNCIIRRQSDGKLFGYNTD--Y------VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK 403 (493)
Q Consensus 332 igAvNti~~~~~~g~l~G~NTD--~------~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~ 403 (493)
. .+--+|-| | -|++++++- .+..++..++++.|||.+|-+++..|...
T Consensus 166 ---~----------~IPvFhDDqqGTaiv~lA~llnalk~-----------~gk~l~d~kiv~~GAGAAgiaia~~l~~~ 221 (432)
T COG0281 166 ---M----------NIPVFHDDQQGTAIVTLAALLNALKL-----------TGKKLKDQKIVINGAGAAGIAIADLLVAA 221 (432)
T ss_pred ---C----------CCCcccccccHHHHHHHHHHHHHHHH-----------hCCCccceEEEEeCCcHHHHHHHHHHHHh
Confidence 1 13334444 3 334455542 23678889999999999999999999999
Q ss_pred CC---eEEEEeCC
Q 011136 404 GA---RVVIANRT 413 (493)
Q Consensus 404 g~---~i~v~~R~ 413 (493)
|+ +|++++|.
T Consensus 222 g~~~~~i~~~D~~ 234 (432)
T COG0281 222 GVKEENIFVVDRK 234 (432)
T ss_pred CCCcccEEEEecC
Confidence 97 79999873
No 438
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=92.17 E-value=0.18 Score=49.70 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=27.7
Q ss_pred EEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANR 412 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R 412 (493)
+|+|+|+||.|..++..|+..|+ +++|++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~ 31 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDM 31 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999999 9999775
No 439
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=92.17 E-value=0.8 Score=42.50 Aligned_cols=53 Identities=32% Similarity=0.335 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYGES 417 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~~~~a 417 (493)
..|++..|+.. +.+++||+++|+|.+. .|+-++.-|.+.|+.|+++...-...
T Consensus 20 p~aii~lL~~~-----------~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l 73 (160)
T PF02882_consen 20 PLAIIELLEYY-----------GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNL 73 (160)
T ss_dssp HHHHHHHHHHT-----------T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSH
T ss_pred HHHHHHHHHhc-----------CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcc
Confidence 35667777652 2578999999999997 99999999999999999988764333
No 440
>PRK06483 dihydromonapterin reductase; Provisional
Probab=92.14 E-value=0.33 Score=46.71 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=32.7
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES 417 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a 417 (493)
+|++||.|+ ||.|++++..|++.|++|++++|+.++.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~ 39 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPA 39 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhH
Confidence 478999997 7799999999999999999999987653
No 441
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.12 E-value=0.31 Score=50.34 Aligned_cols=88 Identities=19% Similarity=0.069 Sum_probs=56.0
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN 456 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n 456 (493)
.++.||++-|||.|..|++++.-++-.|++|..++|... .+..+.++..+. ++++-+ .+.++++-
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~~~y~------------~l~ell-~~sDii~l 206 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELGARYV------------DLDELL-AESDIISL 206 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcCceec------------cHHHHH-HhCCEEEE
Confidence 568899999999999999999999977889999999864 222222222221 122222 44566666
Q ss_pred ccccCCchhhHhhhhhHHHHhhccce
Q 011136 457 IIHLGNHLEWVTAAFNLFFYLTCNSY 482 (493)
Q Consensus 457 ~tplG~~~~~~~~~~~~~~~~~~~~~ 482 (493)
..|+.-....+ +|......+|..
T Consensus 207 ~~Plt~~T~hL---in~~~l~~mk~g 229 (324)
T COG1052 207 HCPLTPETRHL---INAEELAKMKPG 229 (324)
T ss_pred eCCCChHHhhh---cCHHHHHhCCCC
Confidence 66666654444 344444444443
No 442
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.10 E-value=0.27 Score=47.10 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=34.8
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL 421 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la 421 (493)
++++|.|+ ||.|++++..|++.|++|+++.|+.++.+.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ 42 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence 57899985 88999999999999999999999988766553
No 443
>PRK12743 oxidoreductase; Provisional
Probab=92.09 E-value=0.38 Score=47.06 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=36.3
Q ss_pred CCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhh
Q 011136 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMS 425 (493)
Q Consensus 381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~ 425 (493)
+|+++|.|+ ||.|++++..|++.|++|+++. |+.++++.+.+.+.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~ 48 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVR 48 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH
Confidence 578999998 7799999999999999887764 56777777666543
No 444
>PRK09135 pteridine reductase; Provisional
Probab=92.09 E-value=0.4 Score=46.13 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=36.3
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLM 424 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~ 424 (493)
.++++||.|+ |+.|+.++..|.+.|++|+++.|+ .++.+.+.+.+
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 51 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAEL 51 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4688999998 779999999999999999988885 45555555544
No 445
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=92.07 E-value=2.7 Score=42.14 Aligned_cols=126 Identities=20% Similarity=0.227 Sum_probs=75.9
Q ss_pred HHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHH---hhCCCcEEEEeccCCCCCCC--CCCHHHHHHHHHHHH
Q 011136 36 DKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLI---KESPVPTLFTYRPIWEGGQY--DGDENERVDVLRLAM 108 (493)
Q Consensus 36 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~---~~~~~PiI~T~R~~~eGG~~--~~~~~~~~~ll~~~l 108 (493)
+....+++++++.|+|.+-+|+..-..... .+.++.+. +...+|+++-... .|... ..+.+......+.+.
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~--~g~~~e~~~~~~~i~~a~~~a~ 170 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYP--RGPGIKNEYDPEVVAHAARVAA 170 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEec--CCCccCCCccHHHHHHHHHHHH
Confidence 445666778888999999999865432111 22333444 3357898875432 22211 113344455567888
Q ss_pred HhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCC-CHHHHHHHHHHHHHcCCC
Q 011136 109 ELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP-SVEDLSNLVARIQASGAD 168 (493)
Q Consensus 109 ~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp-~~~el~~~~~~~~~~gaD 168 (493)
+.|+|||-..+.-+.+.++++... ...+|++|= .-+. +.++..+.+.++.+.||+
T Consensus 171 e~GAD~vKt~~~~~~~~l~~~~~~--~~ipV~a~G---Gi~~~~~~~~l~~v~~~~~aGA~ 226 (267)
T PRK07226 171 ELGADIVKTNYTGDPESFREVVEG--CPVPVVIAG---GPKTDTDREFLEMVRDAMEAGAA 226 (267)
T ss_pred HHCCCEEeeCCCCCHHHHHHHHHh--CCCCEEEEe---CCCCCCHHHHHHHHHHHHHcCCc
Confidence 899999988754434556666532 235555541 1111 456788888888889987
No 446
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.07 E-value=0.98 Score=46.30 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=38.1
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW 426 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~ 426 (493)
.|.+++|.|+|+++.+++..++..|++|+++.++.+|. ++++.++.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~-~~a~~~Ga 210 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAAR-RLALALGA 210 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHhCC
Confidence 37899999999999998887788899888889988874 56676664
No 447
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=92.03 E-value=6.3 Score=39.53 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc-----------hhHHHHHHhhC--CCcEEEEeccCCCCCCCCCCHHHH
Q 011136 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNP-----------RENIKTLIKES--PVPTLFTYRPIWEGGQYDGDENER 100 (493)
Q Consensus 34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~-----------~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~ 100 (493)
+.++.+.-++.+.+.|+|.||+ -+..... .+.++.+++.. +.++...+|... .-
T Consensus 18 ~~~~~~~ia~~L~~~GVd~IEv---G~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~ 84 (266)
T cd07944 18 GDEFVKAIYRALAAAGIDYVEI---GYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN----------DD 84 (266)
T ss_pred CHHHHHHHHHHHHHCCCCEEEe---ecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC----------CC
Q ss_pred HHHHHHHHHhCCcE--EEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE--eec
Q 011136 101 VDVLRLAMELGADY--IDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA--TTA 176 (493)
Q Consensus 101 ~~ll~~~l~~~~dy--IDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia--~~a 176 (493)
.+.++.+.+.|+++ |-+..+.-+...+.+..++..+.+|.++.-+...++ .+.+.+.++++.+.|+|.+-++ +=.
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~-~~~~~~~~~~~~~~g~~~i~l~DT~G~ 163 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYS-DEELLELLELVNEIKPDVFYIVDSFGS 163 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCC-HHHHHHHHHHHHhCCCCEEEEecCCCC
Q ss_pred CCHhHHHHHHHHhccC-C--CCE
Q 011136 177 LDITDVARVFQITVHS-Q--VPI 196 (493)
Q Consensus 177 ~s~~D~~~l~~~~~~~-~--~Pl 196 (493)
-+|+++.++.+.+.+. + .|+
T Consensus 164 ~~P~~v~~lv~~l~~~~~~~~~i 186 (266)
T cd07944 164 MYPEDIKRIISLLRSNLDKDIKL 186 (266)
T ss_pred CCHHHHHHHHHHHHHhcCCCceE
No 448
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=92.00 E-value=5.1 Score=41.52 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=63.4
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC----------C--Cc---hhHHHHHHhhCCCcEEEEeccCCC
Q 011136 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN----------F--NP---RENIKTLIKESPVPTLFTYRPIWE 89 (493)
Q Consensus 25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----------~--~~---~~~l~~l~~~~~~PiI~T~R~~~e 89 (493)
-+.+.|.+++.+++..-++.+.+.|+|.|||=...-.. + ++ .+.++.+++....|+-+-+|-..+
T Consensus 66 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~ 145 (333)
T PRK11815 66 PVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGID 145 (333)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeC
Confidence 36689999999999998888878899999997664210 0 11 134555655567888777775333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 011136 90 GGQYDGDENERVDVLRLAMELGADYIDVE 118 (493)
Q Consensus 90 GG~~~~~~~~~~~ll~~~l~~~~dyIDIE 118 (493)
+. .+.++..++.+.+.+.|++++.|-
T Consensus 146 ~~---~t~~~~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 146 DQ---DSYEFLCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred CC---cCHHHHHHHHHHHHHhCCCEEEEc
Confidence 32 233456677778888899999875
No 449
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.96 E-value=0.18 Score=53.54 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=30.7
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR 412 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R 412 (493)
+++.+|+|+|+||.|..++..|+..|+ +|+|++.
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF 74 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 456799999999999999999999999 9998774
No 450
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=91.96 E-value=2.2 Score=42.73 Aligned_cols=154 Identities=17% Similarity=0.115 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh--hCCCcEEEEeccC-CCCCCCCCCHHHHHHHHHHHH
Q 011136 32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK--ESPVPTLFTYRPI-WEGGQYDGDENERVDVLRLAM 108 (493)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~l 108 (493)
..+++++..-++++.+.++|+|=+---+ +....+ ..+.|+++++=+. .-| .. +..+....-.+.++
T Consensus 35 ~~~~~d~~~~~~~a~~~~~~av~v~~~~---------~~~~~~~~~~~~~l~~~i~~~~~~~-~~-~~~~~~~~~ve~A~ 103 (267)
T PRK07226 35 IDGLVDIRDTVNKVAEGGADAVLMHKGL---------ARHGHRGYGRDVGLIVHLSASTSLS-PD-PNDKVLVGTVEEAI 103 (267)
T ss_pred CcCcCCHHHHHHHHHhcCCCEEEeCHhH---------HhhhccccCCCCcEEEEEcCCCCCC-CC-CCcceeeecHHHHH
Confidence 3466677777777777788888664322 221111 2467888765421 111 00 11134555677899
Q ss_pred HhCCcEEEEEccccc----c---hhHHHhh-cCCCCcEEEEE-ccc---CCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 011136 109 ELGADYIDVELQVAR----E---FNDSIRG-KKPEKCKVIVS-SHN---YQYTPSVEDLSNLVARIQASGADIVKFATTA 176 (493)
Q Consensus 109 ~~~~dyIDIEl~~~~----~---~~~~l~~-~~~~~~kiI~S-~H~---f~~tp~~~el~~~~~~~~~~gaDIvKia~~a 176 (493)
+.|++.+|+=+.... + .+.++.. .++.+..+|+. |-+ .+...+.+++....+.+.+.|||++|.-...
T Consensus 104 ~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~ 183 (267)
T PRK07226 104 KLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG 183 (267)
T ss_pred HcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC
Confidence 999999998765432 1 2233332 23456666663 211 1122233456666677888999999997432
Q ss_pred CCHhHHHHHHHHhccCCCCEEEEe
Q 011136 177 LDITDVARVFQITVHSQVPIIGLV 200 (493)
Q Consensus 177 ~s~~D~~~l~~~~~~~~~PlIa~~ 200 (493)
|...+-+.....++|+.+.+
T Consensus 184 ----~~~~l~~~~~~~~ipV~a~G 203 (267)
T PRK07226 184 ----DPESFREVVEGCPVPVVIAG 203 (267)
T ss_pred ----CHHHHHHHHHhCCCCEEEEe
Confidence 33333344444568886664
No 451
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.95 E-value=0.41 Score=48.20 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=38.1
Q ss_pred cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHh
Q 011136 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG-ESLTFLRLM 424 (493)
Q Consensus 377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~~~ 424 (493)
..+++|+++|.|+ ||.|++++..|++.|++|++++|+.+ ..+.+.+.+
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~ 91 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRV 91 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH
Confidence 3567899999997 77999999999999999999999753 344444444
No 452
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.87 E-value=0.28 Score=50.10 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=36.0
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
.+++|+|+|++|.-+++.|++.|++|+++.|..++.+.+.+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~ 43 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ 43 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh
Confidence 36999999999999999999999999999998777766654
No 453
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=91.83 E-value=0.37 Score=51.38 Aligned_cols=42 Identities=33% Similarity=0.421 Sum_probs=36.4
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLT 419 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~ 419 (493)
.+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~ 217 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITL 217 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 457899999998 889999999999999999999998766543
No 454
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=91.83 E-value=0.4 Score=46.29 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=34.6
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYGESLTFLRLM 424 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v-~~R~~~~a~~la~~~ 424 (493)
++|.++|.|+ ||.|++++..|++.|+++++ ..|+..+.++..+.+
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 48 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQ 48 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHH
Confidence 4688999987 88999999999999997766 455555555555443
No 455
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.83 E-value=4.1 Score=40.55 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=82.5
Q ss_pred CcEEEEeecC--CC-----HHHHHHHHHhhhhcCCCEEEEEecCCCCCCchh---HHHHHH---hhCCCcEEEEeccCCC
Q 011136 23 PTLICVPIMG--ES-----VDKMVVDMGKANASGADLVEIRLDGLKNFNPRE---NIKTLI---KESPVPTLFTYRPIWE 89 (493)
Q Consensus 23 ~~~Icv~l~~--~~-----~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~---~l~~l~---~~~~~PiI~T~R~~~e 89 (493)
...+|+++.. +. .+.....++++++.|+|.|-+|...... ...+ .++.+. +..++|+++-.- ..
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~-~~~~~~~~~~~i~~~~~~~g~~liv~~~--~~ 146 (258)
T TIGR01949 70 DVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSD-TEWEQIRDLGMIAEICDDWGVPLLAMMY--PR 146 (258)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEe--cc
Confidence 3446777722 21 1134556778888999999999875432 1112 233333 335789887322 23
Q ss_pred CCCCC-CCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 011136 90 GGQYD-GDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD 168 (493)
Q Consensus 90 GG~~~-~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaD 168 (493)
|.... .+.+...+..+.+.+.|+|||=+....+.+.++++... ...+|+++=- -.+.+.++..+.++++.+.||+
T Consensus 147 Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~--~~iPVva~GG--i~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 147 GPHIDDRDPELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKG--CPAPVVVAGG--PKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred CcccccccHHHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHh--CCCcEEEecC--CCCCCHHHHHHHHHHHHHcCCc
Confidence 32211 23333334457778899999998866445666666542 3455655411 1222467888999999999998
No 456
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.80 E-value=1.8 Score=45.23 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=54.5
Q ss_pred ecCCCHHHHHHHHH----hhhhcCCCEEEEEecC-------CCC---C---------Cc-----hhHHHHHHhhCC----
Q 011136 30 IMGESVDKMVVDMG----KANASGADLVEIRLDG-------LKN---F---------NP-----RENIKTLIKESP---- 77 (493)
Q Consensus 30 l~~~~~~e~~~~~~----~~~~~~aD~vElRlD~-------l~~---~---------~~-----~~~l~~l~~~~~---- 77 (493)
++..+++++.++.. ++.+.|.|.|||=.-. |.. . ++ .+.++.+|+...
T Consensus 134 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~ 213 (353)
T cd04735 134 LTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHAD 213 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccC
Confidence 45555565555533 4456899999996532 111 0 11 134555666554
Q ss_pred CcEEEEeccCCCCCC-CCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 011136 78 VPTLFTYRPIWEGGQ-YDGDENERVDVLRLAMELGADYIDVEL 119 (493)
Q Consensus 78 ~PiI~T~R~~~eGG~-~~~~~~~~~~ll~~~l~~~~dyIDIEl 119 (493)
.++.+-+|-..+... ...+.++..++++.+.+.|+|||+|-.
T Consensus 214 ~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 214 KDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred CCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 567788886532211 112457778888888889999999854
No 457
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=91.79 E-value=3.5 Score=38.23 Aligned_cols=107 Identities=24% Similarity=0.275 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh---hCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011136 36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK---ESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA 112 (493)
Q Consensus 36 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~ 112 (493)
.+....++++.+.|++.|++|.-........+.++.+++ ..+.++++.- + ++.+.+.|+
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~---------------~---~~~a~~~g~ 73 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIND---------------R---VDLALAVGA 73 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC---------------h---HHHHHHcCC
Confidence 456667777778899999999743321111122333332 2356766421 1 345677899
Q ss_pred cEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136 113 DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (493)
Q Consensus 113 dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi 172 (493)
+.+-++..... ...+...+..+.++-+|.| ++ +...++...|+|++.+
T Consensus 74 ~~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~----t~------~~~~~~~~~g~d~i~~ 121 (196)
T cd00564 74 DGVHLGQDDLP--VAEARALLGPDLIIGVSTH----SL------EEALRAEELGADYVGF 121 (196)
T ss_pred CEEecCcccCC--HHHHHHHcCCCCEEEeeCC----CH------HHHHHHhhcCCCEEEE
Confidence 98877753221 1222222344677888877 22 2345566789999876
No 458
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=91.79 E-value=4.6 Score=38.65 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=67.0
Q ss_pred cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe---cCCCCCC-chhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHH
Q 011136 24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRL---DGLKNFN-PRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENE 99 (493)
Q Consensus 24 ~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl---D~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~ 99 (493)
..|.++|...|......+++.+.+.|+|+|++|+ .+.+++. ..+.++.+++..+.|+-+++... +.+.
T Consensus 4 ~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--------d~~~ 75 (220)
T PRK05581 4 VLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--------NPDR 75 (220)
T ss_pred cEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--------CHHH
Confidence 4588999999999999999999999999999986 2222221 13456666654445554555542 2333
Q ss_pred HHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcc
Q 011136 100 RVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH 144 (493)
Q Consensus 100 ~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H 144 (493)
+. +.+.+.|+++|-+=....+.....+...+..+.+++.+.+
T Consensus 76 ~i---~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (220)
T PRK05581 76 YV---PDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLN 117 (220)
T ss_pred HH---HHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEEC
Confidence 44 3445778888655433332222222222345677777764
No 459
>PRK06128 oxidoreductase; Provisional
Probab=91.79 E-value=0.38 Score=48.47 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=36.9
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH--HHHHHHHHhh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG--ESLTFLRLMS 425 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~--~a~~la~~~~ 425 (493)
.+++|++||.|+ ||.|++++..|++.|++|++..|+.+ +.+++.+.+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~ 102 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQ 102 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHH
Confidence 356899999997 88999999999999999888776533 3445554443
No 460
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=91.78 E-value=0.2 Score=55.96 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=31.1
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR 412 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R 412 (493)
+++.+|+|+|+||.|..++..|+..|+ +|++++.
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 567899999999999999999999999 9998773
No 461
>PRK06953 short chain dehydrogenase; Provisional
Probab=91.77 E-value=0.34 Score=46.26 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=35.5
Q ss_pred CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
++++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~ 43 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA 43 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh
Confidence 47889985 889999999999999999999999888777653
No 462
>PRK14031 glutamate dehydrogenase; Provisional
Probab=91.74 E-value=1 Score=48.56 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEE-Ee
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI-AN 411 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v-~~ 411 (493)
+.|...+++..+.. .+.+++|++|+|.|.|-+|..++..|.+.|++|+. .+
T Consensus 208 g~Gv~~~~~~~~~~-------~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 208 GYGNIYFLMEMLKT-------KGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHHh-------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 78888887776543 13578999999999999999999999999997765 44
No 463
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.73 E-value=2.1 Score=43.73 Aligned_cols=140 Identities=20% Similarity=0.317 Sum_probs=83.1
Q ss_pred EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136 256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT 327 (493)
Q Consensus 256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~ 327 (493)
.-++| +|-+++.- ..-...++++|++.....++- +++.+.++.+ .+++..|.-|-+|.-..+ -..++.+++
T Consensus 38 iI~vg~d~as~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p 116 (297)
T PRK14168 38 TILVGESPASLSYV-TLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDP 116 (297)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence 34555 33333333 233567889999876554432 4677777777 567899999999963211 111111211
Q ss_pred HHHHhcceeeEEEeccCCeE-EEE------eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHH
Q 011136 328 VAKSIGAVNCIIRRQSDGKL-FGY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYG 399 (493)
Q Consensus 328 ~A~~igAvNti~~~~~~g~l-~G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~ 399 (493)
.+.+-..+..- -|++ .|. -.-..|++.-|+.. +.+++||+|+|+|.+. .|+-++.-
T Consensus 117 -~KDVDGl~~~n----~g~l~~~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~l 180 (297)
T PRK14168 117 -DKDVDGFHPVN----VGRLMIGGDEVKFLPCTPAGIQEMLVRS-----------GVETSGAEVVVVGRSNIVGKPIANM 180 (297)
T ss_pred -cccccccChhh----HHHHhcCCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcccHHHHHH
Confidence 11122222110 1222 121 11256677766642 2678999999999988 99999999
Q ss_pred HHhC----CCeEEEEeC
Q 011136 400 AKAK----GARVVIANR 412 (493)
Q Consensus 400 L~~~----g~~i~v~~R 412 (493)
|.+. ++.|+++.+
T Consensus 181 L~~~~~~~~atVtv~hs 197 (297)
T PRK14168 181 MTQKGPGANATVTIVHT 197 (297)
T ss_pred HHhcccCCCCEEEEecC
Confidence 9887 578998864
No 464
>PRK06847 hypothetical protein; Provisional
Probab=91.71 E-value=0.22 Score=51.64 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=31.2
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
.++|+|||+|.+|.+++..|++.|++|+|+.|+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4679999999999999999999999999999864
No 465
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.71 E-value=0.42 Score=48.04 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=34.9
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT 419 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~ 419 (493)
+++.|||+|-||.+++..|+..|++|++++++.++.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~ 41 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDR 41 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHH
Confidence 47999999999999999999999999999999988753
No 466
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.70 E-value=0.48 Score=45.36 Aligned_cols=46 Identities=35% Similarity=0.471 Sum_probs=35.5
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG-ESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~~~ 424 (493)
+++++++|.|+ |+.|++++..|.+.|++|++..|+.+ +.+.+.+.+
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~ 50 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEI 50 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH
Confidence 35789999997 78999999999999999878777654 344444433
No 467
>PRK14030 glutamate dehydrogenase; Provisional
Probab=91.66 E-value=1.4 Score=47.36 Aligned_cols=96 Identities=21% Similarity=0.129 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEE--------Ee---CChHHHHHHHH
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI--------AN---RTYGESLTFLR 422 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v--------~~---R~~~~a~~la~ 422 (493)
+.|...+++..+.. .+.+++|++|+|-|.|-+|..++..|.+.|++|+. +| -+.++...|.+
T Consensus 208 g~Gv~~~~~~~~~~-------~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~ 280 (445)
T PRK14030 208 GFGALYFVHQMLET-------KGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLE 280 (445)
T ss_pred HHHHHHHHHHHHHH-------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHH
Confidence 77887777765543 13578999999999999999999999999998776 67 55655433332
Q ss_pred Hhhhhh-h---cccccceEEEEeecccccCCceEEEEec
Q 011136 423 LMSWLL-L---NTLLFDSVIVIRILLFTWHLKFFIAANI 457 (493)
Q Consensus 423 ~~~~~~-~---~~~~~~~~~v~~~l~~~~~~~~~i~~n~ 457 (493)
.-.... . ....++....+ +.++.|..+.+|++||
T Consensus 281 ~k~~~~~~~~~~~~~~~ga~~i-~~~~~~~~~cDVliPc 318 (445)
T PRK14030 281 LRASGNDIVAPYAEKFPGSTFF-AGKKPWEQKVDIALPC 318 (445)
T ss_pred HHHhcCccHHHHHhcCCCCEEc-CCccceeccccEEeec
Confidence 211100 0 00011122222 3456788888999854
No 468
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=91.66 E-value=14 Score=41.45 Aligned_cols=226 Identities=13% Similarity=0.124 Sum_probs=128.4
Q ss_pred ccccccCCCCCcEE-EEeecCCCHHHHHHHHHhhhhcCCCEEEE----EecC-CC--CCCchhHHHHHHhhC-CCcEEEE
Q 011136 13 KLVSGGMRKNPTLI-CVPIMGESVDKMVVDMGKANASGADLVEI----RLDG-LK--NFNPRENIKTLIKES-PVPTLFT 83 (493)
Q Consensus 13 ~~~~~~~~~~~~~I-cv~l~~~~~~e~~~~~~~~~~~~aD~vEl----RlD~-l~--~~~~~~~l~~l~~~~-~~PiI~T 83 (493)
+|..-++++..--+ ++.+ +.++.+.-++.+.+.|.+.+|. ..|- +. .-++.+.++.+++.. +.|+-.-
T Consensus 6 ~i~DtTLRDG~Qs~~~tr~---~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml 82 (593)
T PRK14040 6 AITDVVLRDAHQSLFATRL---RLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQML 82 (593)
T ss_pred EEEECCccccccccccccc---CHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEE
Confidence 34444555443332 4333 3445555555555679999999 2442 11 224566788777654 5777666
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-c-hhHHHhhcCCCCcEE--EEEcccCCCCC--CHHHHHH
Q 011136 84 YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-E-FNDSIRGKKPEKCKV--IVSSHNYQYTP--SVEDLSN 157 (493)
Q Consensus 84 ~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~-~-~~~~l~~~~~~~~ki--I~S~H~f~~tp--~~~el~~ 157 (493)
+|..+==|-.+-+++...+.++.+.+.|++++-|=....+ + ....+..+++.+..+ -++|- ..| +.+.+.+
T Consensus 83 ~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt---~~p~~~~~~~~~ 159 (593)
T PRK14040 83 LRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYT---TSPVHTLQTWVD 159 (593)
T ss_pred ecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEe---eCCccCHHHHHH
Confidence 7743333433445666777899999999999888644332 1 112233333344443 23432 233 4567899
Q ss_pred HHHHHHHcCCCEEEEEeec--CCHhHHHHHHHHhcc-CCCCEEEEe--cCCcchhhhhhccccCCcccccccCCCcCCCC
Q 011136 158 LVARIQASGADIVKFATTA--LDITDVARVFQITVH-SQVPIIGLV--MGERGLISRILCAKFGGFLTFGTLENGIVSAP 232 (493)
Q Consensus 158 ~~~~~~~~gaDIvKia~~a--~s~~D~~~l~~~~~~-~~~PlIa~~--MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAP 232 (493)
..+++.+.|||.+-|+=|+ -+++++.++.+.+++ .+.|+=.-+ .--++..+-+..-.-|....=+++..- ....
T Consensus 160 ~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~gl-G~~~ 238 (593)
T PRK14040 160 LAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSM-SMTY 238 (593)
T ss_pred HHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccc-cccc
Confidence 9999999999998888665 457888888876554 355554332 222333333333333433322333221 2245
Q ss_pred CCCCHHhHHHHhh
Q 011136 233 GQPTIKDLLDLYN 245 (493)
Q Consensus 233 GQ~~i~~l~~~~~ 245 (493)
||++++++...++
T Consensus 239 Gn~~le~vv~~L~ 251 (593)
T PRK14040 239 GHSATETLVATLE 251 (593)
T ss_pred cchhHHHHHHHHH
Confidence 8888888776665
No 469
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.65 E-value=0.43 Score=46.79 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=30.7
Q ss_pred ccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeC
Q 011136 378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANR 412 (493)
Q Consensus 378 ~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R 412 (493)
.+++|+++|.|++ |.|++++..|++.|++|++++|
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~ 40 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYW 40 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEec
Confidence 3678999999994 8999999999999999888754
No 470
>PRK08309 short chain dehydrogenase; Provisional
Probab=91.58 E-value=0.52 Score=44.35 Aligned_cols=42 Identities=24% Similarity=0.131 Sum_probs=36.9
Q ss_pred EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~ 424 (493)
+++|.|+.|.+.+++..|.+.|++|.+..|+.++++.+...+
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l 43 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKRES 43 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHh
Confidence 589999989999999999999999999999998888876544
No 471
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=91.54 E-value=0.35 Score=48.40 Aligned_cols=69 Identities=6% Similarity=-0.030 Sum_probs=48.4
Q ss_pred EEEEEecchHHHHHHHHHHhCC--Ce-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136 383 LFVVIGAGGAGKALAYGAKAKG--AR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH 459 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g--~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp 459 (493)
++.|||.|.+|+.++.++.+.+ ++ +.+++|+.++++++++.++.. +..++++-. ++.++++.++|
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~-----------~~~~~~ell-~~~DvVvi~a~ 70 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAK-----------ACLSIDELV-EDVDLVVECAS 70 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCe-----------eECCHHHHh-cCCCEEEEcCC
Confidence 6899999999999999988764 54 778999999999888754421 223333222 45677777775
Q ss_pred cCCc
Q 011136 460 LGNH 463 (493)
Q Consensus 460 lG~~ 463 (493)
-..+
T Consensus 71 ~~~~ 74 (265)
T PRK13304 71 VNAV 74 (265)
T ss_pred hHHH
Confidence 4333
No 472
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=91.53 E-value=0.26 Score=53.39 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=32.5
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
...++|+|||||.+|.+++.+|.+.|.+++|+.|+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 346889999999999999999999999999998864
No 473
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.52 E-value=0.44 Score=51.44 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=33.0
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
+.+++++|+|.|++|++++..|.+.|++|++++++.
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 457899999999999999999999999999999864
No 474
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.50 E-value=0.68 Score=47.30 Aligned_cols=95 Identities=18% Similarity=0.086 Sum_probs=70.3
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEee----cccccCCceEEE
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRI----LLFTWHLKFFIA 454 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~----l~~~~~~~~~i~ 454 (493)
....+|+|||.|-++.-++.-...+|++|+|.+++.+|.+.|-..|.. +++++.| +++.. .+++++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~---------rv~~~~st~~~iee~v-~~aDlv 235 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG---------RVHTLYSTPSNIEEAV-KKADLV 235 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc---------eeEEEEcCHHHHHHHh-hhccEE
Confidence 345679999999999999998888999999999999999988776664 3333332 23444 668999
Q ss_pred EeccccCCc--hhhHhhhhhHHHHhhccceEeee
Q 011136 455 ANIIHLGNH--LEWVTAAFNLFFYLTCNSYVVME 486 (493)
Q Consensus 455 ~n~tplG~~--~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
++|+=++-. |..++ .+....+-++-|++|
T Consensus 236 IgaVLIpgakaPkLvt---~e~vk~MkpGsVivD 266 (371)
T COG0686 236 IGAVLIPGAKAPKLVT---REMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEecCCCCceehh---HHHHHhcCCCcEEEE
Confidence 999877654 55554 333555678888887
No 475
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.49 E-value=0.38 Score=52.44 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=34.9
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESL 418 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~ 418 (493)
+.+++++|+|.|+.|++++..|...|++|+++++..++.+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~ 49 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALR 49 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 3578999999999999999999999999999998765543
No 476
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.43 E-value=0.28 Score=47.09 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=32.9
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
+++|+++|.|+ ||.|++++..|++.|++|++++|+..
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 40 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDK 40 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 56789999997 77999999999999999999999754
No 477
>PRK07411 hypothetical protein; Validated
Probab=91.40 E-value=0.22 Score=52.76 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=30.7
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR 412 (493)
Q Consensus 379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R 412 (493)
++..+|+|+|+||.|..++..|+..|+ +|++++.
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~ 70 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF 70 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 456899999999999999999999999 9998764
No 478
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.38 E-value=0.43 Score=49.25 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=37.7
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHHhhhh
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANR---TYGESLTFLRLMSWL 427 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R---~~~~a~~la~~~~~~ 427 (493)
.|++|+|+|+|++|..++..++..|++|++++| +.+|. ++++.++..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~~~Ga~ 221 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVEELGAT 221 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCE
Confidence 478999999999999999988889999999998 45554 466666543
No 479
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=91.36 E-value=10 Score=36.86 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136 32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG 111 (493)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~ 111 (493)
..|.+++..-++++.+.+..+|=+.--+. +..+..++.+++. +.|+=.-+.|.. +.+.+..-.+.+++.|
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v------~~a~~~l~~~~v~-v~tVigFP~G~~---~~~~K~~E~~~Av~~G 83 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV------PLAKELLKGTEVR-ICTVVGFPLGAS---TTDVKLYETKEAIKYG 83 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHHH------HHHHHHcCCCCCe-EEEEeCCCCCCC---cHHHHHHHHHHHHHcC
Confidence 34566777777776666555544322111 1222223333433 445545555543 3456666678899999
Q ss_pred CcEEEEEcccc-------cc---hhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE----eec
Q 011136 112 ADYIDVELQVA-------RE---FNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA----TTA 176 (493)
Q Consensus 112 ~dyIDIEl~~~-------~~---~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia----~~a 176 (493)
+|-||+=++.. +. .+.++.. .+..-.|+|+-... .+.+++....+-+.+.|||++|-. ...
T Consensus 84 AdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~----L~~~ei~~a~~ia~eaGADfvKTsTGf~~~g 159 (211)
T TIGR00126 84 ADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL----LTDEEIRKACEICIDAGADFVKTSTGFGAGG 159 (211)
T ss_pred CCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence 99999977654 11 2333332 22233677765432 245678888888889999999987 244
Q ss_pred CCHhHHHHHHHHhc
Q 011136 177 LDITDVARVFQITV 190 (493)
Q Consensus 177 ~s~~D~~~l~~~~~ 190 (493)
-+++|+..+.+...
T Consensus 160 at~~dv~~m~~~v~ 173 (211)
T TIGR00126 160 ATVEDVRLMRNTVG 173 (211)
T ss_pred CCHHHHHHHHHHhc
Confidence 67788877776654
No 480
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=91.33 E-value=8.2 Score=38.76 Aligned_cols=126 Identities=10% Similarity=0.168 Sum_probs=72.6
Q ss_pred EEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch---------------------hHHHHHHhhCCCc-EEEEe
Q 011136 27 CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---------------------ENIKTLIKESPVP-TLFTY 84 (493)
Q Consensus 27 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~~~~P-iI~T~ 84 (493)
=++.-.++.+...+-++.+.+.|+|++||=+=+-+...+. +.++.+|+....| ++.|+
T Consensus 20 yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y 99 (263)
T CHL00200 20 FITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTY 99 (263)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence 3467788999999989888899999999977443222110 1233344444567 33333
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 011136 85 RPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA 164 (493)
Q Consensus 85 R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~ 164 (493)
=.. .+.-. .-++++.+.+.|+| .+|+ ||. ..+|..+.++.+++
T Consensus 100 ~N~----i~~~G---~e~F~~~~~~aGvd------------------------gvii--pDL----P~ee~~~~~~~~~~ 142 (263)
T CHL00200 100 YNP----VLHYG---INKFIKKISQAGVK------------------------GLII--PDL----PYEESDYLISVCNL 142 (263)
T ss_pred ccH----HHHhC---HHHHHHHHHHcCCe------------------------EEEe--cCC----CHHHHHHHHHHHHH
Confidence 210 00000 01233333333333 3344 443 13577788888888
Q ss_pred cCCCEEEEEeecCCHhHHHHHHHHh
Q 011136 165 SGADIVKFATTALDITDVARVFQIT 189 (493)
Q Consensus 165 ~gaDIvKia~~a~s~~D~~~l~~~~ 189 (493)
.|-+.+=++.+..+.+....+.+..
T Consensus 143 ~gi~~I~lv~PtT~~eri~~i~~~a 167 (263)
T CHL00200 143 YNIELILLIAPTSSKSRIQKIARAA 167 (263)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHhC
Confidence 8888888877776666665555543
No 481
>PLN02334 ribulose-phosphate 3-epimerase
Probab=91.29 E-value=6.7 Score=38.22 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=70.7
Q ss_pred CCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc----hhHHHHHHhhCCCcEEEEeccCCCCCCCCCC
Q 011136 21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP----RENIKTLIKESPVPTLFTYRPIWEGGQYDGD 96 (493)
Q Consensus 21 ~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~ 96 (493)
++.-.|+.++...+...+..+++++.+.|+|.+-+|+--..-... .+.++.+++.++.|+-+++-.. +
T Consensus 5 ~~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~--------~ 76 (229)
T PLN02334 5 KNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVT--------N 76 (229)
T ss_pred cCCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccC--------C
Confidence 344467778777787888889999888899999998754321111 1456677766677777776542 3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEccc-ccch-hHHHhhcCCCCcEEEEEcc
Q 011136 97 ENERVDVLRLAMELGADYIDVELQV-AREF-NDSIRGKKPEKCKVIVSSH 144 (493)
Q Consensus 97 ~~~~~~ll~~~l~~~~dyIDIEl~~-~~~~-~~~l~~~~~~~~kiI~S~H 144 (493)
++.|.+ .+.+.|+|+|.+=+.. ..+. ...+...+..+.++-+|.|
T Consensus 77 p~d~~~---~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~ 123 (229)
T PLN02334 77 PEDYVP---DFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLN 123 (229)
T ss_pred HHHHHH---HHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEEC
Confidence 445555 4467899999544331 1122 2222222345678888877
No 482
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=91.28 E-value=0.25 Score=58.29 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=31.5
Q ss_pred CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (493)
Q Consensus 380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~ 413 (493)
.+++|+|||+|.+|.++|+.|++.|++|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4689999999999999999999999999999865
No 483
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.27 E-value=0.26 Score=51.51 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=31.9
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
..+|+|||+|-+|.++|.+|++.|++|+|+.|..+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 36899999999999999999999999999998753
No 484
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.26 E-value=0.53 Score=49.47 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=54.7
Q ss_pred CCEEEEEecchHHHHHHHHHHhCC-------CeEEEEeCChH-HHHHHHHHhhhh-----hhcc-cccceEEEEeecccc
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKG-------ARVVIANRTYG-ESLTFLRLMSWL-----LLNT-LLFDSVIVIRILLFT 446 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g-------~~i~v~~R~~~-~a~~la~~~~~~-----~~~~-~~~~~~~v~~~l~~~ 446 (493)
..++.|||+|..|.|++..|++.| .+|.++.|+.+ ..+++++.++.. +++. ...+++++-.++.+.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 358999999999999999999987 58999999976 233344444322 2221 122366666655432
Q ss_pred c-CCceEEEEeccccCCchhhHhhhhhH
Q 011136 447 W-HLKFFIAANIIHLGNHLEWVTAAFNL 473 (493)
Q Consensus 447 ~-~~~~~i~~n~tplG~~~~~~~~~~~~ 473 (493)
. -.|..+++ +++..+.+-...
T Consensus 91 v~~aDiIvlA------VPsq~l~~vl~~ 112 (365)
T PTZ00345 91 VEDADLLIFV------IPHQFLESVLSQ 112 (365)
T ss_pred HhcCCEEEEE------cChHHHHHHHHH
Confidence 2 13455555 777776644333
No 485
>PRK12367 short chain dehydrogenase; Provisional
Probab=91.26 E-value=0.39 Score=47.26 Aligned_cols=37 Identities=38% Similarity=0.511 Sum_probs=33.5
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
.+++|+++|.|+ ||.|++++..|++.|++|++++|+.
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 467899999998 7899999999999999999999986
No 486
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.26 E-value=1.3 Score=44.51 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=32.8
Q ss_pred EEEEEecchHHHHHHHHHHhCC----CeEEEEeCCh-HHHHHHHHH
Q 011136 383 LFVVIGAGGAGKALAYGAKAKG----ARVVIANRTY-GESLTFLRL 423 (493)
Q Consensus 383 ~vlvlGaGGaara~~~~L~~~g----~~i~v~~R~~-~~a~~la~~ 423 (493)
++.|||+|-+|.+++..|.+.| .+|++++|+. ++.+.+...
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~ 48 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDK 48 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHH
Confidence 5899999999999999999988 4899999864 445555443
No 487
>PRK09414 glutamate dehydrogenase; Provisional
Probab=91.25 E-value=1.3 Score=47.69 Aligned_cols=96 Identities=18% Similarity=0.099 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEE-e----------CChHHHHHHHH
Q 011136 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA-N----------RTYGESLTFLR 422 (493)
Q Consensus 354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~-~----------R~~~~a~~la~ 422 (493)
+.|...+++..+.. .+.+++|++|+|.|-|.+|+.++..|.+.|++|+.+ + -+.+...+..+
T Consensus 212 g~Gv~~~~~~~~~~-------~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~ 284 (445)
T PRK09414 212 GYGLVYFAEEMLKA-------RGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKE 284 (445)
T ss_pred cHHHHHHHHHHHHh-------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHH
Confidence 67777777665542 135788999999999999999999999999976655 5 35554444433
Q ss_pred Hh--hhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136 423 LM--SWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH 459 (493)
Q Consensus 423 ~~--~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp 459 (493)
.- ....++... .... .+.++.|..+.+|++||..
T Consensus 285 ~~~~~l~~~~~~~--~~~~-i~~~~i~~~d~DVliPaAl 320 (445)
T PRK09414 285 VRRGRISEYAEEF--GAEY-LEGGSPWSVPCDIALPCAT 320 (445)
T ss_pred hcCCchhhhhhhc--CCee-cCCccccccCCcEEEecCC
Confidence 22 111111000 0111 2344667778899998874
No 488
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.23 E-value=0.4 Score=49.97 Aligned_cols=42 Identities=31% Similarity=0.355 Sum_probs=36.0
Q ss_pred CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHH
Q 011136 381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRL 423 (493)
Q Consensus 381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~ 423 (493)
+.+|+|+|+|.+|..++..++..|+ +|++++++.+|. ++|++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~~ 211 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL-ELAKE 211 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHH
Confidence 3389999999999999888899998 999999999887 45544
No 489
>PRK12827 short chain dehydrogenase; Provisional
Probab=91.20 E-value=0.49 Score=45.47 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=35.2
Q ss_pred cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC----ChHHHHHHHHHh
Q 011136 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR----TYGESLTFLRLM 424 (493)
Q Consensus 379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R----~~~~a~~la~~~ 424 (493)
+++++++|.|+ ||.|++++..|.+.|++++++.| +.++.+++.+.+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 54 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGI 54 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHH
Confidence 45789999997 88999999999999998888665 444445454443
No 490
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.18 E-value=0.48 Score=46.25 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=34.3
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHH
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFL 421 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la 421 (493)
.+++|+++|.|+ ||.|++++..|.+.|++|++..| +.+.++++.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~ 49 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR 49 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence 356899999997 88999999999999998877655 444444443
No 491
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.17 E-value=0.71 Score=46.95 Aligned_cols=41 Identities=27% Similarity=0.223 Sum_probs=34.1
Q ss_pred EEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHh
Q 011136 384 FVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 384 vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~ 424 (493)
+.|||+|-+|..+++.|+..|. +|+++++++++++..+.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl 42 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDI 42 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHH
Confidence 4699999999999999998876 9999999988776555433
No 492
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=91.15 E-value=0.31 Score=47.85 Aligned_cols=40 Identities=38% Similarity=0.534 Sum_probs=34.7
Q ss_pred ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES 417 (493)
Q Consensus 378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a 417 (493)
.+++|.++|.|+ ||.|++++..|++.|++|++.+|+.++.
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~ 46 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG 46 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 467899999996 7899999999999999999999886553
No 493
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.14 E-value=1.2 Score=46.35 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=35.7
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR 422 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~ 422 (493)
.++.|||+|.+|.+++..|++.| .++++.|+.+..+.+.+
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~ 47 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDIND 47 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh
Confidence 47999999999999999999998 67888899988888765
No 494
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=91.12 E-value=0.85 Score=46.80 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=46.3
Q ss_pred CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 011136 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG 198 (493)
Q Consensus 136 ~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~l~~~~~~~~~PlIa 198 (493)
+..|.+-.-..+.|-+.+.-.+++.++.+.|||||+++++ +.+|...+-...++.+.|+|+
T Consensus 19 daPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVa 79 (361)
T COG0821 19 DAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVA 79 (361)
T ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEE
Confidence 3344433333445556777889999999999999999998 788887777777778999986
No 495
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=91.10 E-value=0.26 Score=54.38 Aligned_cols=33 Identities=33% Similarity=0.366 Sum_probs=27.2
Q ss_pred CEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~ 414 (493)
|+|+|||||.+|.++++.|.+.|.+++++.|+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 789999999999999999999999999998864
No 496
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=91.09 E-value=7.6 Score=40.04 Aligned_cols=96 Identities=11% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC----------C--Cc---hhHHHHHHhhCCCcEEEEecc
Q 011136 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN----------F--NP---RENIKTLIKESPVPTLFTYRP 86 (493)
Q Consensus 22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----------~--~~---~~~l~~l~~~~~~PiI~T~R~ 86 (493)
..| +.+.|.+++.+++.+-++.+.+.|+|.|||-...=.. + ++ .+.++.+++..+.|+-+-+|.
T Consensus 54 e~p-~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~ 132 (318)
T TIGR00742 54 ESP-VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI 132 (318)
T ss_pred CCc-EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 444 5589999999999998888777899999997765210 0 11 233555556668899888886
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc
Q 011136 87 IWEGGQYDGDENERVDVLRLAMELGADYIDVELQV 121 (493)
Q Consensus 87 ~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~ 121 (493)
-.+-. .+.+...++.+.+.+.|++.|+|--+.
T Consensus 133 g~~~~---~~~~~~~~~~~~l~~~G~~~itvHgRt 164 (318)
T TIGR00742 133 GIDPL---DSYEFLCDFVEIVSGKGCQNFIVHARK 164 (318)
T ss_pred CCCCc---chHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 32111 122455677788888899999987654
No 497
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.03 E-value=1 Score=47.50 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=40.8
Q ss_pred CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhh
Q 011136 382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWL 427 (493)
Q Consensus 382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~ 427 (493)
++|||+|+|.+|--+|.-+.+.+. +|-++||+-.|++.+.+.+...
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~ 48 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARS 48 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhC
Confidence 369999999999999999988876 9999999999999998877753
No 498
>PRK10637 cysG siroheme synthase; Provisional
Probab=90.99 E-value=0.46 Score=51.43 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=34.7
Q ss_pred cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG 415 (493)
Q Consensus 377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~ 415 (493)
.+++||+|||+|+|.+|.-=+..|.+.|++|+|++....
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~ 46 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFI 46 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 568899999999999998888899999999999987653
No 499
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.99 E-value=3.7 Score=39.85 Aligned_cols=118 Identities=21% Similarity=0.204 Sum_probs=71.7
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (493)
Q Consensus 26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (493)
+..-+...+.++...-++.+.+.|.+++|+.++. .+..+.++.+++..+- +++=.-| -.++ +-.+
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~---~~~~~~I~~l~~~~p~-~~IGAGT-------Vl~~----~~a~ 81 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRT---PAALEAIRLIAKEVPE-ALIGAGT-------VLNP----EQLA 81 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHHCCC-CEEEEee-------ccCH----HHHH
Confidence 3345889999999999999888899999999532 1223556677655432 2221111 1122 3466
Q ss_pred HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136 106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (493)
Q Consensus 106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi 172 (493)
.+++.|++|+-. -...++.++.- ++.+.-.|=.. .||+ + ..++.++|||++|+
T Consensus 82 ~a~~aGA~Fivs-P~~~~~vi~~a---~~~~i~~iPG~----~Tpt-----E-i~~a~~~Ga~~vKl 134 (212)
T PRK05718 82 QAIEAGAQFIVS-PGLTPPLLKAA---QEGPIPLIPGV----STPS-----E-LMLGMELGLRTFKF 134 (212)
T ss_pred HHHHcCCCEEEC-CCCCHHHHHHH---HHcCCCEeCCC----CCHH-----H-HHHHHHCCCCEEEE
Confidence 788899999843 33334444332 23343334111 1443 3 56688899999999
No 500
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=90.98 E-value=0.5 Score=48.40 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=36.7
Q ss_pred CCCEEEEEec-chHHHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHh
Q 011136 380 AGKLFVVIGA-GGAGKALAYGAKAKG--ARVVIANRTYGESLTFLRLM 424 (493)
Q Consensus 380 ~~~~vlvlGa-GGaara~~~~L~~~g--~~i~v~~R~~~~a~~la~~~ 424 (493)
+++++||.|+ |+.|++++..|.+.| ++|++++|+..+...+.+.+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~ 50 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF 50 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh
Confidence 5789999997 889999999999886 48999999877665555443
Done!