RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011136
(493 letters)
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 539 bits (1390), Expect = 0.0
Identities = 302/396 (76%), Positives = 344/396 (86%), Gaps = 2/396 (0%)
Query: 21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
KNP+LIC P+M +S+DKMV++ KA+ GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81 LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF SI GKKP K KVI
Sbjct: 62 LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
VSSHNYQ TPSVEDL LVARIQ +GADIVK ATTA+DI DVAR+F IT +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
MGERGL+SRILC+KFGG+LTFGTL++ VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
KPV HSKSPI++N+AFKSV FNGV+VHLLVD++ F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR G + SS
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414
LA K VVIGAGGAGKALAYGAK KGA+VVIANRTY
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTY 397
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; HET: TLA; 1.75A {Aquifex
aeolicus} PDB: 2ysw_A
Length = 219
Score = 224 bits (571), Expect = 6e-71
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 12/223 (5%)
Query: 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTL--IKESPVPTLF 82
LI VP+ + + + KA GAD+VE+R+D + + + L + + T+
Sbjct: 2 LIAVPLDDTNFSENLK---KAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58
Query: 83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVS 142
T R EGG+ + E + + +DY D+EL K K+I+S
Sbjct: 59 TIRSPEEGGREVKNREELFE----ELSPLSDYTDIELSSRGLLVKLYNITKEAGKKLIIS 114
Query: 143 SHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG 202
HN++ TP + ++ G I K A A DVAR+ I+ + I + MG
Sbjct: 115 YHNFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEKILISMG 173
Query: 203 ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
+ G ISR+ FG +T+ +LE APGQ ++++++L
Sbjct: 174 DYGKISRLAGYVFGSVITYCSLEKA--FAPGQIPLEEMVELRK 214
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis,
3-dehydroquinase, structural genomi NPPSFA; 2.00A
{Geobacillus kaustophilus}
Length = 257
Score = 224 bits (572), Expect = 2e-70
Identities = 67/239 (28%), Positives = 102/239 (42%), Gaps = 13/239 (5%)
Query: 24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
IC P++GE K++ + + DL+E R D + + +E + +
Sbjct: 20 PCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEI 79
Query: 79 PTLFTYRPIWEGGQY-DGDENERVDVLRLAMELGA-DYIDVELQVAREFNDSIRGKKPEK 136
P LFT R EGGQ +E E ++ GA D +D EL D R +
Sbjct: 80 PILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECS 139
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
++VS H + TP E L + + + GADI K A DV + Q T ++
Sbjct: 140 VWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARREL 199
Query: 194 -VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP 251
+P+I + MG G I+R+ FG +TF SAPGQ I D+ + + Q
Sbjct: 200 AIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQ--SSAPGQIPIDDVRTVLSILQTYS 256
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover,
shikimate pathway, lyase; 1.90A {Staphylococcus aureus
subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Length = 238
Score = 222 bits (568), Expect = 3e-70
Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 17/240 (7%)
Query: 19 MRKNPTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK--- 74
M + I + S+++ ++ D++E+R+D +N + + + K
Sbjct: 1 MTH--VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKV 58
Query: 75 -ESPVPTLFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDS---I 129
+ L TYR +GG + ++++ LA G D ID+E Q + I
Sbjct: 59 MQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRII 118
Query: 130 RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT 189
+ +VI+S HN++ TP +++L + ++Q + VK A + DV + Q
Sbjct: 119 THLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAM 178
Query: 190 V----HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
++G+ M + GLISR FGG LT+G + APGQ + DL
Sbjct: 179 STFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGE--PQAPGQIDVTDLKAQVT 236
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 219 bits (560), Expect = 6e-68
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 16/187 (8%)
Query: 230 SAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL 289
S+ ++L N + ++ G++ P+ HS SP + N+A + G ++
Sbjct: 8 SSGVDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFE 67
Query: 290 V--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL 347
V A + + G ++P+K+ A + DE+ AK +GA+N I+ DG L
Sbjct: 68 VDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYL 125
Query: 348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R 406
GYNTD G I AI++ + GK V++GAGGA A+ A +G
Sbjct: 126 RGYNTDGTGHIRAIKESGFD-----------MRGKTMVLLGAGGAATAIGAQAAIEGIKE 174
Query: 407 VVIANRT 413
+ + NR
Sbjct: 175 IKLFNRK 181
>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate,
amino-acid biosynthesis, aromatic amino acid
biosynthesis, lyase; HET: DHS; 2.20A {Clostridium
difficile}
Length = 258
Score = 214 bits (547), Expect = 7e-67
Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 14/235 (5%)
Query: 24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
ICVPI+G++ ++ + + + D++E R+D +N + +K ++ E +
Sbjct: 20 PKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDI 79
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRGK-KPEK 136
P LFT+R + EGG+ + + + G D IDVEL + E D + ++
Sbjct: 80 PLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKE 139
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VH 191
KVI+S+H++ TP E++ + + R+Q GAD+ K A + DV + + T ++
Sbjct: 140 VKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIY 199
Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
+ PII + M G+ISR+ FG LTFG ++ VSAPGQ + K+L + N
Sbjct: 200 ADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKELNSVLNL 252
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus
pyogenes, dehydroshikimate, PSI-2, protein ST
initiative; HET: MSE; 1.85A {Streptococcus pyogenes
serotype M1}
Length = 231
Score = 213 bits (543), Expect = 1e-66
Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 16/237 (6%)
Query: 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPT 80
N I P+M D+ + + +L+E R D L + ++ +
Sbjct: 2 NAMRIVAPVMPRHFDEAQ-AIDISKYEDVNLIEWRADFLPKDEIVAVAPAIFEKFAGKEI 60
Query: 81 LFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKV 139
+FT R + EGG E VD++ + DYID E + + + +
Sbjct: 61 IFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEML----DFPNL 116
Query: 140 IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VHSQV 194
I+S HN++ TP E+L + + +VK A DV + T ++ +
Sbjct: 117 ILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQ 174
Query: 195 PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP 251
+ MG+ G +SR G T+ +L++ VS PGQ T+ D+ + +M
Sbjct: 175 EFATISMGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLNDMKRIIEVLEMDI 229
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
barrel, lyase; 1.03A {Salmonella enterica subsp} PDB:
3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A
1l9w_A* 1qfe_A*
Length = 276
Score = 213 bits (543), Expect = 4e-66
Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 14/237 (5%)
Query: 21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE----- 75
+ I V +MG+++ + + + D++E R+D N E++
Sbjct: 37 EGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREII 96
Query: 76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDS-IRGKK 133
+ P LFT+R EGG+ + +D+ R A++ G D ID+EL + + +
Sbjct: 97 TDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAH 156
Query: 134 PEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV--- 190
VI+S+H++ TP+ E++ + ++Q GADI K A DV + TV
Sbjct: 157 QHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQ 216
Query: 191 --HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
++ PII + M + G+ISR+ FG TFG ++ SAPG ++ DL +
Sbjct: 217 ERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVADLRTVLT 271
>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis,
aromatic amino acid biosynthe schiff base, lyase; 1.60A
{Streptococcus mutans}
Length = 259
Score = 211 bits (538), Expect = 2e-65
Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 16/234 (6%)
Query: 19 MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SP 77
M + I VP+M +++++ + D++E R D L + + ++ S
Sbjct: 30 MGRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSG 88
Query: 78 VPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKPEK 136
+FT R EGG + + ++R +A DYID E R+ + + +
Sbjct: 89 HEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DF 144
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VH 191
+I+S HN++ TP E+L + + + A +VK A + DV + T ++
Sbjct: 145 SNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLN 202
Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
+ + M + G ISR+ G TF +LE SAPGQ ++ D+ +
Sbjct: 203 PNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE--SAPGQISLADMRKIKE 254
>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A
{Archaeoglobus fulgidus}
Length = 196
Score = 197 bits (501), Expect = 7e-61
Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 31/221 (14%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR 85
+ + ++ A AD+VE+R+D R + + T R
Sbjct: 3 LVATLSSPEELEL--------AEKADVVELRIDLFDFSGARVDK---------EKILTCR 45
Query: 86 PIWEGGQYDGDENERVDVLRLAME-LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH 144
+ +GG+++GDE ER++ ++ A + L DY+D+E + D C++I S H
Sbjct: 46 RVSDGGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSAFDF-------NCRIIESYH 98
Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGER 204
N+ TP +L ++ D+VK AT DV + +I + ++ +MGER
Sbjct: 99 NFIRTPDYSEL---KGIVEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGER 154
Query: 205 GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
+R+L A G + + + APGQ ++ D ++ +
Sbjct: 155 FSFTRVLAAYLGSPFIYCYVGS--PKAPGQISLDDAREIIS 193
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 200 bits (512), Expect = 9e-61
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 17/191 (8%)
Query: 227 GIVSAPGQPTIKDLLDLYNFRQM-GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVF 285
G+ + + T++ G+I P+ HS SP ++NEAF +G + V+
Sbjct: 10 GVDLGTENLYFQSNAMTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVY 69
Query: 286 VHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQS 343
+ V ++ Q + + + G++ ++P+K K D++ A+ +GAVN ++
Sbjct: 70 LAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND-- 127
Query: 344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK 403
DG L G+ TD G + A+++ + GK + GAGGA A+ A
Sbjct: 128 DGVLTGHITDGTGYMRALKEAGHD-----------IIGKKMTICGAGGAATAICIQAALD 176
Query: 404 GA-RVVIANRT 413
G + I NR
Sbjct: 177 GVKEISIFNRK 187
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 197 bits (504), Expect = 5e-60
Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 18/203 (8%)
Query: 243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTY 300
++ + T+++G+IG PV HS SP+ N + G N V++ + +++ K F+ +
Sbjct: 2 HHHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGF 61
Query: 301 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISA 360
+ G + T+P KE + D V+ AK IGAVN + +GK +GYNTD++G + +
Sbjct: 62 KALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKS 119
Query: 361 IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY--GESL 418
++ + + K +V+GAGGA +A+ Y +GA+V + NRT L
Sbjct: 120 LKSLIPE-----------VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKL 168
Query: 419 -TFLRLMSWLLLNTLLFDSVIVI 440
L ++ +++
Sbjct: 169 AQKFPLEVVNSPEEVIDKVQVIV 191
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 197 bits (503), Expect = 9e-60
Identities = 75/206 (36%), Positives = 104/206 (50%), Gaps = 28/206 (13%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
+ TKV G+IG PV HS SPI++N AFK G N V+V V +++ +
Sbjct: 7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
GF+ TIPHK +K DE+D A+ IGAVN I DGK GYNTD +GA A+E+ +
Sbjct: 67 GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEI- 123
Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY--GESL------ 418
+ K V+ GAGGA +A+A+ AK ++IANRT E+L
Sbjct: 124 ----------GRVKDKNIVIYGAGGAARAVAFEL-AKDNNIIIANRTVEKAEALAKEIAE 172
Query: 419 ----TFLRLMSWLLLNTLLFDSVIVI 440
F + + L+ L I+I
Sbjct: 173 KLNKKFGEEVKFSGLDVDLDGVDIII 198
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 193 bits (492), Expect = 4e-58
Identities = 71/207 (34%), Positives = 99/207 (47%), Gaps = 23/207 (11%)
Query: 245 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSS 302
N G KV+G+IG PV HS SP+++N+AF +G + V + +
Sbjct: 15 NLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRA 74
Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
AG + TIPHK A + DEVD A+ IGAVN II DG+L GYNTD +G + A+E
Sbjct: 75 LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALE 132
Query: 363 DGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY--GESL- 418
+ + L GK +VIGAGG + + + + A R+ +ANRT E L
Sbjct: 133 EEMNI----------TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV 182
Query: 419 -----TFLRLMSWLLLNTLLFDSVIVI 440
S T L + I+I
Sbjct: 183 REGDERRSAYFSLAEAETRLAEYDIII 209
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 188 bits (480), Expect = 1e-56
Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGF 308
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G
Sbjct: 3 LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62
Query: 309 SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGR 368
+ T+P KE A + CD++ +A GAVN ++ + +L GYNTD +G +++
Sbjct: 63 NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115
Query: 369 LNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG--ESLTFLRLMSW 426
+ +++GAGG+ KALA K +G +V + NR+ + L +
Sbjct: 116 ----------KNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF 165
Query: 427 LLLNTLLFDSVI 438
+ FD +I
Sbjct: 166 MEPPKSAFDLII 177
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 184 bits (470), Expect = 4e-55
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 18/168 (10%)
Query: 249 MGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAG 307
+ DT++ + G+P + +N + +G N ++ DI + + G
Sbjct: 2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 308 FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRG 367
+ ++P KE + DE+ A++I +VN I+ +G L YNTDY+ + IE
Sbjct: 60 CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117
Query: 368 RLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTY 414
+ +V G+GG KA+ + ++ I R
Sbjct: 118 K------------NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 153
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 183 bits (468), Expect = 1e-54
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 19/196 (9%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
M +T ++G+IG+ +GHS S ++ F+ VG G++ V + + + T+
Sbjct: 1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
G + TIP+K +K E+ A+ IGAVN + + G+NTDY+G +
Sbjct: 61 GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSK--- 115
Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTY--GESL-TFLR 422
V + + VV+G+GGA +A+ K A+ + + R + +
Sbjct: 116 --FRVE------IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK 167
Query: 423 LMSWLLLNTLLFDSVI 438
++S+ L+ L D +I
Sbjct: 168 VISYDELSNLKGDVII 183
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 182 bits (464), Expect = 4e-54
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 20/171 (11%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
D+ + G+IG+ + S++P ++ + G V+ + D+
Sbjct: 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
F G + T P+K+A + DEV A +GAVN ++ G G+NTD G +E+G
Sbjct: 63 FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121
Query: 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414
L V +GAGG G A+AY G ++ +A+
Sbjct: 122 LPN-----------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 176 bits (449), Expect = 3e-52
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
F ++G PV HS SP ++ A +S+G G + + + + F G + T
Sbjct: 2 LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLT 60
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
+P KEAA+ D V A+ IGAVN +++ +G+LFG+NTD G + A++ G
Sbjct: 61 LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAGG------ 112
Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414
L G +V+GAGGAG+A+A+ + G V + NRT
Sbjct: 113 -----IPLKGPA-LVLGAGGAGRAVAFALREAGLEVWVWNRTP 149
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 172 bits (439), Expect = 2e-50
Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIP 313
F +IG P+ HS SP++++ F+S+ + + V + + S GF+ TIP
Sbjct: 3 FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG 373
HKE + D+++ AKS+GAVN ++ + DGK GYNTD +G ++ ++ G
Sbjct: 63 HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEG------ 114
Query: 374 GVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTY--GESL-TFLRLMSWLLL 429
+ +++GAGGA K +A K + +ANRT + + ++
Sbjct: 115 -----IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHA 169
Query: 430 NTLLFDSVIVI 440
+ L + I+I
Sbjct: 170 ESHLDEFDIII 180
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A
{Thermotoga maritima}
Length = 253
Score = 160 bits (407), Expect = 4e-46
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIP 313
F IIG PV HS SP LYNE FK G N + + + + ++ GF+ TIP
Sbjct: 3 FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRI-LEEYDGFNATIP 61
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG 373
HKE ++ + + A+ I AVNC+ R + GYNTD+VG + ++E
Sbjct: 62 HKERVMRYVEPSED-AQRIKAVNCVFRGK------GYNTDWVGVVKSLEG---------- 104
Query: 374 GVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTY--GESLTF-LRLMSWLLL 429
+ VV+GAGGA +A+ Y + + + NRT ++L F +++ S L
Sbjct: 105 ----VEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQL 160
Query: 430 NTLLFDSVIVI 440
+ ++ + +
Sbjct: 161 DEVVKKAKSLF 171
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 156 bits (398), Expect = 1e-44
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
+ + + G P+ HSKSP ++ + + + + +L +D + S G + T
Sbjct: 2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
+P KE A DE+ A GAVN ++R + DG+L G NTD VG +S +E RL+
Sbjct: 62 VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLE-----RLSF 115
Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413
G ++IGAGGA + + + V I NRT
Sbjct: 116 I------RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 151
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A
{Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB:
1p74_A*
Length = 272
Score = 154 bits (393), Expect = 6e-44
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
++ + G P+ SKSP++ N+ ++ L D + + G + T
Sbjct: 2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
P KE A + DE AK A N + + DGKL+ NTD +G ++ ++ RLN
Sbjct: 62 SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQ-----RLNW 115
Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413
+ +++GAGGA K + +V+ANRT
Sbjct: 116 L------RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT 151
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 155 bits (394), Expect = 6e-44
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDF 305
M + + G P+ HSKSP ++ + + ++ V D + + + +
Sbjct: 3 AMASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGG 62
Query: 306 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL 365
G + T+P KE A + D + A+ GAVN + + DG++ G NTD G + +
Sbjct: 63 RGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLL--- 118
Query: 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRT 413
V L G ++IGAGGA + + + A + + NRT
Sbjct: 119 --AQQVL------LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT 159
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A
{Pseudomonas putida}
Length = 272
Score = 152 bits (386), Expect = 7e-43
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 23/197 (11%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSC 310
+ + +IG+P+ H+KSP+++ ++ + + DD + S G +
Sbjct: 2 SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61
Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
T P K A + D A+ A N + DG++ N D +G + IE+ L
Sbjct: 62 TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEE----NLG 115
Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYG--ESL------TFL 421
L + +++GAGGA + +A + +VIANR +L + L
Sbjct: 116 EP------LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRL 169
Query: 422 RLMSWLLLNTLLFDSVI 438
R+ + L FD V+
Sbjct: 170 RISRYEALEGQSFDIVV 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 1e-09
Identities = 77/437 (17%), Positives = 127/437 (29%), Gaps = 153/437 (35%)
Query: 80 TLFTYRPIWEGGQYDGDENERVDVLRLAMELGADY-------IDV------ELQVAREFN 126
+F GGQ G+ ++ + LR +L Y I EL
Sbjct: 158 AIF-------GGQ--GNTDDYFEELR---DLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 127 DSI--RG-------KKPEK-------------CKVI---------VSSHNYQYTPSVEDL 155
+ + +G + P C +I V++ +TP
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG---- 261
Query: 156 SNLVARIQAS---GADIV------------KFATTALDITDVARVFQITVHSQ--VPIIG 198
L + ++ + +V F + V F I V P
Sbjct: 262 -ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTS 318
Query: 199 L--------VMGERGLISRILCAKFGGFLTFGTLENGI----VSAPGQPTIKDLLDLYNF 246
L + G+ S +L LT +++ + P ++ + L N
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSIS--N-LTQEQVQDYVNKTNSHLPAGKQVE--ISLVNG 373
Query: 247 RQM----GPDTKVFGI------IGKPVGHSKSPILYNE---AFKSVGFNGVFV----HLL 289
+ GP ++G+ P G +S I ++E F S F V HLL
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF-SNRFLPVASPFHSHLL 432
Query: 290 VDDIAKFFQTYSSND--FAGFSCTIP--HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG 345
V + N+ F IP ++++ I V+CIIR
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRLPVKW 490
Query: 346 KLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA 405
+ T A ++ G GG S G L G G
Sbjct: 491 E----TTTQFKATHILDFG-------PGGASGL--GVLTHRNKDG------------TGV 525
Query: 406 RVVIA-------NRTYG 415
RV++A + YG
Sbjct: 526 RVIVAGTLDINPDDDYG 542
Score = 38.5 bits (89), Expect = 0.006
Identities = 51/295 (17%), Positives = 84/295 (28%), Gaps = 114/295 (38%)
Query: 146 YQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVF--QITVHSQVPIIGLVMGE 203
Y+ + + +D+ N AD T I D+ +T+H GE
Sbjct: 1636 YKTSKAAQDVWNR--------ADNHFKDTYGFSILDIVINNPVNLTIHFG--------GE 1679
Query: 204 RGLISRILCAKFGGFLTFGTLENG-IVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGK- 261
+G + + + + F T+ +G + + I + Y FR G++
Sbjct: 1680 KG---KRIRENYSA-MIFETIVDGKLKTEKIFKEINEHSTSYTFR--SEK----GLLSAT 1729
Query: 262 ----P--VGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHK 315
P K+ E KS G L+ D FAG H
Sbjct: 1730 QFTQPALTLMEKAAF---EDLKSKG-------LIPADAT----------FAG------H- 1762
Query: 316 EAAVKCCDEVDTVAKSIG---AVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL-----RG 367
S+G A+ + +S IE + RG
Sbjct: 1763 ---------------SLGEYAALASL----------------ADVMS-IESLVEVVFYRG 1790
Query: 368 RL-------NVSGGVSSALAGKLFVVIGAGGAGKALAYG----AKAKGARVVIAN 411
+ G + + + A + +AL Y K G V I N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Score = 36.6 bits (84), Expect = 0.020
Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 37/120 (30%)
Query: 17 GGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES 76
G + NP + E++ +V +GK +G LVEI N+N
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGK--RTG-WLVEI-----VNYN------------ 1847
Query: 77 PVPTLFTYRPIWEGGQY--DGDENERVDVL-RLAMELGADYID-VELQVAREFNDSIRGK 132
V QY GD +D + + + ID +ELQ + + + G
Sbjct: 1848 -VE----------NQQYVAAGD-LRALDTVTNVLNFIKLQKIDIIELQKSLSL-EEVEGH 1894
Score = 32.3 bits (73), Expect = 0.47
Identities = 35/292 (11%), Positives = 68/292 (23%), Gaps = 120/292 (41%)
Query: 211 LCAKFGGFLTFGTLENGIVSAPGQPTIKDLLD--LYNFRQM------------------- 249
L KF G+++ +V +L+ L F
Sbjct: 60 LVGKFLGYVSS------LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 250 GPDTKVFGII----------GKPVGHSKSPILYNEAFKSVG-------FNG--------- 283
K +I +P + L+ G F G
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAIFGGQGNTDDYFE 171
Query: 284 ----------VFVHLLVDDIAKFFQTYSSNDFAG---FSCTIP-----HKEAAVKCCDEV 325
V V L+ A+ F+ + + D +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 326 DTVAKS---IG-------AVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGV 375
++ S IG V KL G+ + L+G S G+
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTA--------KLLGFTP------GELRSYLKGATGHSQGL 277
Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL 427
+A+A I + ++ + + ++ ++
Sbjct: 278 VTAVA------IAETDSWESF-----------------FVSVRKAITVLFFI 306
Score = 31.2 bits (70), Expect = 1.1
Identities = 30/200 (15%), Positives = 49/200 (24%), Gaps = 71/200 (35%)
Query: 19 MRKNPTLICVPIMG-------ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT 71
+ NP + + G E+ M+ + + D K N E+ +
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFE------TIVDGKLKTEKIFKEIN--EHSTS 1716
Query: 72 LIKESPV----------PTLFT-----YRPIWEGGQYDGDENERVDVLRLAME----LG- 111
S P L + + G D A LG
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD----------ATFAGHSLGE 1766
Query: 112 -------ADYIDVE--LQVAREFNDSIRGKKPEKCKVIVSSHNYQY-----TPS------ 151
AD + +E ++V RG + Y P
Sbjct: 1767 YAALASLADVMSIESLVEVVF-----YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 152 -VEDLSNLVARIQASGADIV 170
E L +V R+ +V
Sbjct: 1822 SQEALQYVVERVGKRTGWLV 1841
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 7e-06
Identities = 36/256 (14%), Positives = 72/256 (28%), Gaps = 47/256 (18%)
Query: 237 IKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKF 296
KD+ D+ + + ++ II S + L+ S V KF
Sbjct: 35 CKDVQDM--PKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMV---------QKF 82
Query: 297 FQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFG-YNTDYV 355
+ ++ F + E + + R +D ++F YN +
Sbjct: 83 VEEVLRINY-KFLMSPIKTEQ-------RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 356 GAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGK-ALAYGAKAKGARVVIANRTY 414
+ L L + V ++ G G+GK +A V +Y
Sbjct: 135 QPYLKLRQALL-ELRPAKNV---------LIDGVLGSGKTWVA-------LDVC---LSY 174
Query: 415 GESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGN---HLEWVTAAF 471
+ WL L ++ + + + + H N + + A
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 472 NLFFYLT--CNSYVVM 485
N +V+
Sbjct: 235 RRLLKSKPYENCLLVL 250
Score = 42.9 bits (100), Expect = 2e-04
Identities = 65/407 (15%), Positives = 118/407 (28%), Gaps = 131/407 (32%)
Query: 3 SPNLLV----ASG-SKLVSGGMRKNPTLICVPIMGESVDKMV-VDMGKANASGADLVEI- 55
+ N+L+ SG + + + K+ +++ N S ++E+
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------FKIFWLNLKNCN-SPETVLEML 202
Query: 56 -----RLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110
++D N+ R + + IK R + + Y + VL
Sbjct: 203 QKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLLVLL----- 251
Query: 111 GADYIDV-ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADI 169
+V + FN CK+++++ Q T
Sbjct: 252 -----NVQNAKAWNAFN--------LSCKILLTTRFKQVT-------------------- 278
Query: 170 VKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIV 229
D A I++ L E + L K+ L+
Sbjct: 279 --------DFLSAATTTHISLDHHSM--TLTPDE----VKSLLLKY--------LDCRPQ 316
Query: 230 SAPGQ-----P--------TIKDLLDLY-NFRQMGPDTKVFGIIGKPVGHSKSPILYNEA 275
P + P +I+D L + N++ + D K+ II + + P Y +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLE-PAEYRKM 374
Query: 276 FKSVGFNGVF---VH----LL-----------VDDIAKFFQTYS--SNDFAGFSCTIP-- 313
F + VF H LL V + YS + +IP
Sbjct: 375 FDRL---SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG----KLFGYNTDYVG 356
+ E VK +E + N SD L Y ++G
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Score = 36.4 bits (83), Expect = 0.023
Identities = 51/305 (16%), Positives = 91/305 (29%), Gaps = 95/305 (31%)
Query: 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTL 81
NP + I+ ES+ + D K+ N + + T+I+ S + L
Sbjct: 326 NPRRLS--IIAESIRDGL---------------ATWDNWKHVN-CDKLTTIIESS-LNVL 366
Query: 82 --FTYRPIWEGGQYDG----DENERV--DVL-RLAMELGADYIDVELQVAREFNDSIRGK 132
YR +D + + +L + ++ DV + V + S+ K
Sbjct: 367 EPAEYRK-----MFDRLSVFPPSAHIPTILLSLIWFDV--IKSDVMVVVNKLHKYSLVEK 419
Query: 133 KPEKCKVIVSSHNYQ--YTPSVEDLSNLVARI-----QASGADIVKFATTALDITDVARV 185
+P++ + S + +E+ L I D LD
Sbjct: 420 QPKESTI--SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----QYF 473
Query: 186 FQ-ITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGI------VSAPGQPTIK 238
+ I H + + ER + R++ FL F LE I +A G +
Sbjct: 474 YSHIGHH----LKNIEHPERMTLFRMV------FLDFRFLEQKIRHDSTAWNASG-SILN 522
Query: 239 DLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQ 298
L L ++ + I N+ LV+ I F
Sbjct: 523 TLQQLKFYKP----------------Y----ICDNDPKY---------ERLVNAILDFLP 553
Query: 299 TYSSN 303
N
Sbjct: 554 KIEEN 558
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 39.9 bits (93), Expect = 0.001
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE 416
+ G V+G G G ++A A GA+V + R
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDL 190
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 37.9 bits (89), Expect = 0.002
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 371 VSGGVSSA---LAGKLF----VVIGAGGAGKALAYGAKAKGARVVIANRTY 414
VS + S + K +++G G +A +V +A R
Sbjct: 6 VS--IPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 38.6 bits (90), Expect = 0.004
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
V+IG+GGAG A A A+ GA+V++
Sbjct: 130 VIIGSGGAGLAAAVSARDAGAKVIL 154
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 38.0 bits (89), Expect = 0.006
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
+AGK V G G GK A + GARVV+
Sbjct: 209 IAGKTACVCGYGDVGKGCAAALRGFGARVVV 239
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 38.1 bits (89), Expect = 0.006
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
VV G G AG A + A GA V++
Sbjct: 45 VVAGYGIAGVAASIEAARAGADVLV 69
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 37.6 bits (88), Expect = 0.009
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
GK VV G G GK KA G+ V +
Sbjct: 218 FGGKQVVVCGYGEVGKGCCAALKAMGSIVYV 248
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 37.3 bits (87), Expect = 0.011
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
+AGK+ VV G G GK A GARV +
Sbjct: 245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKV 275
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 37.0 bits (86), Expect = 0.013
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
VV+G+GGAG + A A GA+V++
Sbjct: 130 VVVGSGGAGFSAAISATDSGAKVIL 154
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 37.0 bits (86), Expect = 0.014
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+V+GAG AG + AK GA V++
Sbjct: 125 LVVGAGSAGFNASLAAKKAGANVIL 149
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 36.7 bits (85), Expect = 0.014
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
+ LAG + GA G GKA+A A GA +VIA +T
Sbjct: 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKT 78
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 36.6 bits (85), Expect = 0.015
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
G S G+ VV G G G A A +GAR+V++
Sbjct: 23 DGFLSGFDGRAAVVTGGASGIGLATATEFARRGARLVLS 61
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 35.9 bits (84), Expect = 0.016
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
LAG+ +V GAG G G+ A GARVV +RT
Sbjct: 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT 40
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 36.5 bits (85), Expect = 0.017
Identities = 18/78 (23%), Positives = 32/78 (41%)
Query: 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS 425
R +S L G+ ++ G G G++LA A A G V+ N T + F ++
Sbjct: 122 GARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVA 181
Query: 426 WLLLNTLLFDSVIVIRIL 443
+ L + ++ L
Sbjct: 182 FTATADALATANFIVNAL 199
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 36.2 bits (84), Expect = 0.019
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
AG+ V G G G L +G +V IA+
Sbjct: 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADI 40
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 35.7 bits (83), Expect = 0.025
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR 412
A + V+ GA G G A +GA V++A R
Sbjct: 14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVR 48
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 35.5 bits (83), Expect = 0.026
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
+G +V GAG G G+ A GA+VV RT
Sbjct: 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT 40
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 35.0 bits (80), Expect = 0.027
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRT 413
+ G G GK+L G VV +R
Sbjct: 24 IFGTGDFGKSLGLKMLQCGYSVVFGSRN 51
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 35.4 bits (82), Expect = 0.028
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 376 SSALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIA 410
+++ + +V G GA G +A+ V
Sbjct: 2 AASGEARRVLVYGGRGALGSRCVQAFRARNWWVASI 37
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT
structure initiative; HET: MSE; 1.80A {Pseudomonas
aeruginosa PAO1} SCOP: c.1.15.7
Length = 264
Score = 35.4 bits (81), Expect = 0.029
Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 17 GGMRKNPTLICVPIMGESVDKMV--VDM-GKANASGADLVEIRLDGLKNFNPRENIKTLI 73
G M +P I + G + + +GA VE+R + E + I
Sbjct: 1 GHMSLHPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREELFAGPPDTEALTAAI 60
Query: 74 KESPVPTLF-TYRPIWEGGQYDGDENERV-DVLRLAMELGADYIDVEL------QVAREF 125
+ + +F + +W DG N + LR A GA ++ V L
Sbjct: 61 QLQGLECVFSSPLELWRE---DGQLNPELEPTLRRAEACGAGWLKVSLGLLPEQPDLAAL 117
Query: 126 NDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADI 169
+ +++V + +E L + D+
Sbjct: 118 GRRLARHGL---QLLVENDQTPQGGRIEVLERFFRLAERQQLDL 158
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 34.9 bits (80), Expect = 0.036
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRT 413
++G+G ++LA G +VV+ +R
Sbjct: 33 ILGSGDFARSLATRLVGSGFKVVVGSRN 60
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 34.7 bits (79), Expect = 0.042
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRT 413
V+G G G+ +A G V I R
Sbjct: 24 VLGTGTVGRTMAGALADLGHEVTIGTRD 51
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 35.1 bits (81), Expect = 0.047
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412
++ R+ V L + +V+G G G + G V +ANR
Sbjct: 165 VQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANR 212
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 34.5 bits (80), Expect = 0.053
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
++ +V GAG G G+AL G +G +V + R
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGR 35
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 34.5 bits (80), Expect = 0.054
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
L GK +V GA G G+ +AY GA VV+ R
Sbjct: 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTAR 60
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 34.8 bits (80), Expect = 0.055
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412
+ G V+G G G +A A GA V + R
Sbjct: 155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGAR 188
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 34.9 bits (79), Expect = 0.060
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLN 430
++GAG AG L + V + + + LRL++ + N
Sbjct: 26 GIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHN 71
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 34.5 bits (80), Expect = 0.060
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
+ G++ ++ GAG G G+ AY +++V+
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLW 61
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 34.1 bits (79), Expect = 0.070
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L+GK + GA G G A+A A GA V IA ++
Sbjct: 4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKS 39
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 34.1 bits (79), Expect = 0.081
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
GK+ + G G G GK + + GA+ VIA+R
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASR 58
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 34.2 bits (79), Expect = 0.081
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L GK + G G G A+A A GA V + ++
Sbjct: 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKS 42
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 33.8 bits (78), Expect = 0.084
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
+ G++ VV GA G G+ +A GA V I R
Sbjct: 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRH 38
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 34.1 bits (79), Expect = 0.085
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
V+ GAG G A++ GA VI
Sbjct: 200 VIQGAGPLGLFGVVIARSLGAENVIV 225
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 33.7 bits (78), Expect = 0.095
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
G + + + ++V G G G GK +A G A GA V+I R
Sbjct: 3 GSMQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRN 44
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 33.6 bits (78), Expect = 0.11
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L G++ +V GA G G A A A GA VV+ RT
Sbjct: 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRT 47
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 33.4 bits (77), Expect = 0.11
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANR 412
K +V+G GA G + K+K + +
Sbjct: 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDF 54
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 33.6 bits (78), Expect = 0.12
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANR 412
VIG+GGA A A A +GA+V + R
Sbjct: 8 AVIGSGGAAMAAALKAVEQGAQVTLIER 35
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 33.2 bits (77), Expect = 0.13
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L G V GAG G G + A GAR+++ +R
Sbjct: 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDRE 44
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 33.3 bits (76), Expect = 0.13
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGAR 406
G NT ++ + ++ GK VV+ G G A +GA
Sbjct: 96 NGSNTTAAAGVALVVKAA----------GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAE 145
Query: 407 VVIANRT 413
VV+ R
Sbjct: 146 VVLCGRK 152
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 33.6 bits (77), Expect = 0.13
Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANR------TYGESLT-----FLRLMSWLLLNTLL 433
+VIGAG AG A G +V I + GESL L L+ +
Sbjct: 9 LVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEA--GFLDAVK 66
Query: 434 FDSVIVIRILLFTWH 448
F
Sbjct: 67 AQGFQQKFGAKFVRG 81
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 33.3 bits (77), Expect = 0.15
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L ++ +V GA G G+ A GA V++ R
Sbjct: 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRN 45
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 32.9 bits (76), Expect = 0.16
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
S+A+ K+ ++ G G GK +A +GARVVI RT
Sbjct: 1 SNAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRT 39
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 32.9 bits (76), Expect = 0.16
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L GK ++ GA G G +A A GAR+V++ R
Sbjct: 18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRD 53
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 33.0 bits (76), Expect = 0.17
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L G++ +V G G GKA+ G+ VVIA+R
Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRK 51
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP:
d.283.1.1
Length = 451
Score = 33.0 bits (76), Expect = 0.20
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 96 DENERV--DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEK 136
DEN+++ + A++ G V L + + +R K ++
Sbjct: 16 DENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDR 58
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 32.9 bits (76), Expect = 0.21
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
FV GAG G + AK GA ++IA
Sbjct: 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIA 220
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 32.6 bits (75), Expect = 0.21
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
S VIGAG G +A A+G V R
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRN 40
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 33.0 bits (76), Expect = 0.22
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
VVIG G G A+AY + +
Sbjct: 21 VVIGGGIIGSAIAYYLAKENKNTAL 45
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 32.7 bits (75), Expect = 0.22
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANR 412
++ +V G GA G A+ K G V+ +
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDL 35
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 32.9 bits (76), Expect = 0.24
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 14/56 (25%)
Query: 371 VSGGVSSA---LAGKLF--------VVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414
VS + SA LA + +V+GAG GK +A +G V++ANRTY
Sbjct: 148 VS--IGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 201
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif,
metal-binding site, polymorphism, metal binding protein;
2.50A {Homo sapiens}
Length = 287
Score = 32.5 bits (73), Expect = 0.24
Identities = 23/113 (20%), Positives = 35/113 (30%), Gaps = 15/113 (13%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEI----RLDGLKNFNPRENIKTLIKESPVPTL 81
+CV +SV+ A GAD +E+ G ++ + + +P
Sbjct: 44 VCV----DSVE----SAVNAERGGADRIELCSGLSEGGT--TPSMGVLQVVKQSVQIPVF 93
Query: 82 FTYRPIWEGGQYDGDENER-VDVLRLAMELGADYIDVELQVAREFNDSIRGKK 133
RP Y E E +RLA GAD + D
Sbjct: 94 VMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMS 146
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 32.9 bits (76), Expect = 0.24
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
+ K +V+G +G+A A GA V +
Sbjct: 5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVN 38
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 32.6 bits (75), Expect = 0.25
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
+ G +VIGAG G AKA GA VV
Sbjct: 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCT 198
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 33.0 bits (75), Expect = 0.28
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
+V+GAG AG A A A GARV++
Sbjct: 132 LVVGAGPAGLAAAREASRSGARVMLL 157
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 32.1 bits (74), Expect = 0.29
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 372 SGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
G + L K+ V+ G G G LA +GA +V+A RT
Sbjct: 2 PGSMGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAART 44
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 32.5 bits (75), Expect = 0.29
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
GK V+IG G G + A+G +
Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVM 34
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 32.6 bits (75), Expect = 0.31
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
V G GG G ++ G KA GA +I
Sbjct: 196 AVFGLGGVGLSVIMGCKAAGAARIIG 221
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 32.1 bits (74), Expect = 0.32
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRT 413
L G++ +V G G G +A G A+A G VV+A+R
Sbjct: 19 LRGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRN 54
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 32.2 bits (74), Expect = 0.36
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 371 VSGGVSSAL------AGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
+S G +A+ G + V G GG G A+ G K GA +I
Sbjct: 175 ISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIG 220
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 32.1 bits (74), Expect = 0.37
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRT 413
LAG+ VV GAG G G+A+A+G A+A GA V+ RT
Sbjct: 29 LAGRTAVVTGAGSGIGRAIAHGYARA-GAHVLAWGRT 64
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 32.1 bits (74), Expect = 0.38
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL 421
+IG+G AG + + G +V + ++ T +
Sbjct: 3 YIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPI 39
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 31.8 bits (73), Expect = 0.39
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
S K+ +V GAG G G+A+A G V +A R
Sbjct: 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGR 60
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 31.8 bits (73), Expect = 0.39
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L K+ + G G G G +A G VIA+R+
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRS 60
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 32.2 bits (74), Expect = 0.39
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTY 414
VVIGAGGAG A G + ++ +
Sbjct: 11 VVIGAGGAGMRAALQISQSGQTCALLSKVF 40
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 32.2 bits (73), Expect = 0.44
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANR------TYGESLTFLRLMSWL----LLNTLLF 434
+VIG G G LA +G RV++ R GESL + L + +
Sbjct: 11 IVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKR 70
Query: 435 DSVIVIRILLFTWH 448
+ R F W
Sbjct: 71 AGFPIKRGGTFRWG 84
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 31.9 bits (73), Expect = 0.48
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTY 414
VV+GAGGAG A+G G + +
Sbjct: 22 VVVGAGGAGLRAAFGLSEAGFNTACVTKLF 51
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 31.8 bits (73), Expect = 0.48
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
G++ +V G G G G+ +A A+G VVI R
Sbjct: 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRR 66
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 31.7 bits (73), Expect = 0.49
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRT 413
L+GK ++ GA G GK +A A+A GA+V +A R
Sbjct: 30 LSGKRALITGASTGIGKKVALAYAEA-GAQVAVAARH 65
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 32.0 bits (72), Expect = 0.50
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVI 409
++++G+G G A K +V++
Sbjct: 4 YIIVGSGLFGAVCANELKKLNKKVLV 29
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 31.8 bits (73), Expect = 0.50
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 371 VSGGVSSAL------AGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
S G +A+ G V G G G + G K GA +IA
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIA 225
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 31.8 bits (73), Expect = 0.53
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
V G GG G + G KA GA +I
Sbjct: 196 AVFGLGGVGFSAIVGCKAAGASRIIG 221
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 31.8 bits (73), Expect = 0.53
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
G VVIG GG G +A A VIA
Sbjct: 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIA 201
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 31.4 bits (72), Expect = 0.58
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
LAG++ +V G G G+ +A G GARV I R
Sbjct: 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARD 62
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 31.3 bits (72), Expect = 0.58
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRT 413
L GK +V G+ G G A A G A A GARV++ +
Sbjct: 7 LTGKTALVTGSARGLGFAYAEGLAAA-GARVILNDIR 42
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 31.5 bits (72), Expect = 0.59
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
V G G G A G + GA+ +IA
Sbjct: 197 AVFGLGAVGLAAVMGCHSAGAKRIIA 222
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 31.6 bits (71), Expect = 0.60
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVI 409
++++GAG AG LA + G RV+I
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLI 57
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural
genomics, PS biology, midwest center for structural
genomics, MCSG; 2.70A {Pseudomonas aeruginosa}
Length = 449
Score = 31.5 bits (72), Expect = 0.61
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEK 136
++ A GA +V + + + + S+R + E
Sbjct: 22 QIIAEARRQGASACEVAVSLEQGLSTSVRQGEVET 56
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 31.4 bits (72), Expect = 0.62
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 357 AISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE 416
I+A E L +S + L ++ GAGG G AKA G R VI + E
Sbjct: 129 GITAYE-TLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLR-VITTASRNE 186
Query: 417 SLTFLR 422
++ + +
Sbjct: 187 TIEWTK 192
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 31.4 bits (72), Expect = 0.62
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
+ ++GK ++ GAG G AKA GA VI
Sbjct: 163 AGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIV 197
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 31.3 bits (70), Expect = 0.62
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVV-IANRT 413
V+IGAG LA KG R+V + +RT
Sbjct: 14 VLIGAGNLATNLAKALYRKGFRIVQVYSRT 43
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 31.5 bits (71), Expect = 0.62
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTY------GESLT 419
+IG G AG G V I R+ GESL
Sbjct: 27 AIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLL 67
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 31.2 bits (71), Expect = 0.70
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYG---AKAKGARVVIANRT 413
+ L + V+ GA G G+ALA + G+ ++++ R+
Sbjct: 1 ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARS 42
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 31.2 bits (71), Expect = 0.73
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
V G V++G G G A K GA VI
Sbjct: 204 VIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVIL 243
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 30.9 bits (71), Expect = 0.74
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
G S K+ +V G+G G G+A A +GA VV+A
Sbjct: 1 GPGSMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVA 39
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 31.3 bits (71), Expect = 0.76
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 384 FVVIGAGGAGKALAYG-AKAKGARVVI--ANRTYGE 416
+VV+GAG G A AY G V++ A G
Sbjct: 26 YVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGS 61
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 31.1 bits (71), Expect = 0.77
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 19/59 (32%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVV-------------------IANRTYGESLTFLRLM 424
+V+GAG G A Y +G + + I YGE ++ L
Sbjct: 7 IVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLA 65
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 31.2 bits (71), Expect = 0.81
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVI 409
+ G++ +V GAG G G+A A A+GARVV+
Sbjct: 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVV 56
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 30.9 bits (71), Expect = 0.81
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L ++ +V G G A GARV+IA+
Sbjct: 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLD 46
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 30.7 bits (70), Expect = 0.84
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIA 410
G +V G AGG G+A A G VVIA
Sbjct: 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIA 60
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 30.8 bits (69), Expect = 0.91
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVI 409
+++GAG +G + KG +V I
Sbjct: 6 ILIVGAGFSGAVIGRQLAEKGHQVHI 31
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase;
peptidoglycan synthesis, cell WALL, cell division,
oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia
coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A*
2q85_A* 2mbr_A*
Length = 340
Score = 31.0 bits (71), Expect = 0.94
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 158 LVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRI 210
L+ A D+V+ A V F + + +V IG GE + I
Sbjct: 290 LINEDNAKSEDVVQLAHHV--RQKVGEKFNVWLEPEVRFIG-ASGEVSAVETI 339
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 30.9 bits (70), Expect = 0.97
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
+AGK+ VV G G GK A + GA V +
Sbjct: 275 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWV 305
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural
genomics, PSI, protein structure initiative; 1.70A
{Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Length = 256
Score = 30.6 bits (68), Expect = 0.98
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEI-RLDGLKNFNP-RENIKTLIKESPVPTLFT 83
IC S++ A +GAD VE+ P +K++ + +P
Sbjct: 6 ICC----YSME----CALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPI 57
Query: 84 YRPIWEGGQYDGDENERV-DVLRLAMELGAD 113
RP Y E + + +R ELG
Sbjct: 58 IRPRGGDFCYSDGEFAAILEDVRTVRELGFP 88
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 30.6 bits (68), Expect = 1.00
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANR 412
+ G G G+A+ + + G V
Sbjct: 24 IFGKGNMGQAIGHNFEIAGHEVTYYGS 50
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 30.9 bits (70), Expect = 1.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVV 408
VV+G G G A A+ +G RV+
Sbjct: 8 VVVGGGPVGLATAWQVAERGHRVL 31
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 30.9 bits (70), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
+ GK ++ G G GK A K +GARV +
Sbjct: 272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSV 302
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 30.8 bits (70), Expect = 1.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+VIG G AG A + KG ++
Sbjct: 9 LVIGGGLAGLRAAVATQQKGLSTIV 33
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 30.9 bits (70), Expect = 1.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
++GK+ V+ G G GK A K GARV I
Sbjct: 255 ISGKIVVICGYGDVGKGCASSMKGLGARVYI 285
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 30.8 bits (70), Expect = 1.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+V+G G G A A G + ++
Sbjct: 8 LVVGGGPGGSTAARYAAKYGLKTLM 32
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 30.5 bits (70), Expect = 1.1
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRT 413
L G +V G G G + A GA V +R
Sbjct: 7 LEGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRN 42
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 30.6 bits (70), Expect = 1.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L GK+ V G+ G G A+A GA V I +
Sbjct: 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNS 67
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 30.2 bits (69), Expect = 1.2
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
G S +L GK+ ++ GAG G G+ +A GA+VVI +R
Sbjct: 1 GPGSMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDR 41
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 30.2 bits (69), Expect = 1.2
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L G +V G G G A+ GARV +R
Sbjct: 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN 54
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 30.2 bits (69), Expect = 1.3
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 369 LNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
+ + ++ ++ ++ G G G G+A A A+GA++ + +
Sbjct: 1 MTATSSPTTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDV 45
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 30.2 bits (69), Expect = 1.3
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 376 SSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR 412
SAL GK+ ++ GA G G+A A A+GA V IA R
Sbjct: 2 PSALQGKVALITGASSGIGEATARALAAEGAAVAIAAR 39
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 30.4 bits (69), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVI 409
G++ +V GAG G G+A A +GA VV+
Sbjct: 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVV 38
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 30.2 bits (69), Expect = 1.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
L K+ +V + G G A+A GA VV+++R
Sbjct: 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSR 46
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 30.2 bits (69), Expect = 1.4
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
L GK+ +V GA G G+A A +GA+VV+ R
Sbjct: 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTAR 40
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 30.2 bits (69), Expect = 1.4
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 379 LAGKLFVVIGAGGA---GKALAYGAKAKGARVVIANRTYGESL 418
L GK+ VV GA G G A G GA V I + +
Sbjct: 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGA 60
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 30.4 bits (67), Expect = 1.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVI--ANRTYG 415
+IG G AG + A A G +V + +R G
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG 38
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 30.6 bits (69), Expect = 1.5
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
++IG G AG + AY +G ++++
Sbjct: 10 LIIGGGFAGSSAAYQLSRRGLKILL 34
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 30.2 bits (69), Expect = 1.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
L GK ++ GAG G GK +A GA VV+++
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDI 43
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 30.4 bits (69), Expect = 1.5
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 19/59 (32%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVV-------------------IANRTYGESLTFLRLM 424
++IG+G G A Y A G V+ + YGE ++ L+
Sbjct: 6 IIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLV 64
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 29.8 bits (68), Expect = 1.6
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
A ++V G G GKA+ VI
Sbjct: 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINID 36
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 30.2 bits (69), Expect = 1.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 375 VSSALAGKLFVVIGAGGAGK-ALAYGAKAKGARVV 408
V+ A G+ + G GG G A+ Y AKA G VV
Sbjct: 159 VTGAKPGEWVAIYGIGGLGHVAVQY-AKAMGLNVV 192
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 30.2 bits (69), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 375 VSSALAGKLFVVIGAGGAGK-ALAYGAKAKGARVV 408
V+ G+ V+ G GG G A+ Y A+A G RV
Sbjct: 161 VTDTRPGQWVVISGIGGLGHVAVQY-ARAMGLRVA 194
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 30.4 bits (69), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVI 409
K+ ++ GAG G GK + GA+VV+
Sbjct: 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVV 37
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 30.0 bits (68), Expect = 1.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413
L G+ +++G G G+ +A+ K G +V+ +R+
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRS 172
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 30.4 bits (69), Expect = 1.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
++GAGGAG A A IA
Sbjct: 9 AIVGAGGAGLRAAIAAAQANPNAKIA 34
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 29.8 bits (68), Expect = 1.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
G +++ L K+ ++ GA G G + GARVV+A
Sbjct: 3 GSMTAELENKVAIITGACGGIGLETSRVLARAGARVVLA 41
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 29.5 bits (67), Expect = 1.7
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE 416
++IGA G G A+ K A V+ A R G+
Sbjct: 3 AMKILLIGASGTLGSAVKERL-EKKAEVITAGRHSGD 38
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 29.8 bits (68), Expect = 1.7
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
LAGK+ +V GAG G G A+A +G V+ A
Sbjct: 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCA 59
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA),
exonuclease, transferase, transferase/DNA complex; HET:
US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1
PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A*
2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Length = 605
Score = 30.2 bits (69), Expect = 1.7
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 140 IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALD 178
++S NY E L +A+++ + T +LD
Sbjct: 1 MISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLD 39
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 30.1 bits (67), Expect = 1.7
Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 385 VVIGAGGAGKALAYGAK--AKGARVVI-----ANRTYGESLTFLRLMSWLLLN 430
+VIGAG AG A K + I G + N
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPAN 56
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 29.8 bits (68), Expect = 1.7
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
++GK+ V+ G+ G G A+A G +GA +V+ R
Sbjct: 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQ 40
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 29.8 bits (68), Expect = 1.8
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
S L ++ GA G G +A G G RVV+ R
Sbjct: 2 SLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIAR 39
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 29.9 bits (68), Expect = 1.8
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIA 410
+ G + V+ G A G G A A +GA V+
Sbjct: 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLL 42
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 29.8 bits (66), Expect = 1.8
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRT 413
+G G + K + I +R+
Sbjct: 6 NFVGTGTLTRFFLECLKDRYEIGYILSRS 34
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 29.9 bits (68), Expect = 1.9
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
+ ++ GAG G G+A A A G V RT
Sbjct: 26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRT 61
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 29.5 bits (67), Expect = 1.9
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 368 RLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L ++ K V+ G+ G G A+A GA +V+
Sbjct: 12 DLGTENLYFQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG 58
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 29.8 bits (68), Expect = 2.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
L G +V G G G +LA A GA++++A
Sbjct: 173 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA 204
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 29.8 bits (68), Expect = 2.0
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
L K+ +V GAG G G+A+A + VV
Sbjct: 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVEL 39
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 29.9 bits (68), Expect = 2.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413
+ G+ V+G G G + A GA+V +RT
Sbjct: 122 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT 156
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 29.9 bits (68), Expect = 2.0
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
G ++G GG G K VIA
Sbjct: 186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIA 216
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 29.5 bits (67), Expect = 2.0
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT 413
L GK +V G+ G GKA+A A+GA V+I R
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRR 43
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 29.8 bits (68), Expect = 2.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
L K+ V+ GA G G A A A+GARV I R
Sbjct: 27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGR 61
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 29.4 bits (67), Expect = 2.0
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L+ + VV G G G A GA V R
Sbjct: 6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARD 41
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 29.5 bits (67), Expect = 2.1
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIA 410
+ + VV G A G G A GA+VV+
Sbjct: 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVL 39
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 29.9 bits (68), Expect = 2.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
V GAG G A A A+ GA VVI
Sbjct: 190 YVAGAGPVGLAAAASARLLGAAVVIV 215
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 29.5 bits (67), Expect = 2.1
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
GK+ +V GAG G A A +G + + +
Sbjct: 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDM 39
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 29.9 bits (68), Expect = 2.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
+ GAG G+ A GA+ GA VI
Sbjct: 190 YIAGAGPVGRCAAAGARLLGAACVIV 215
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 29.4 bits (67), Expect = 2.2
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
AGK +V G G G+A+A +GA V +
Sbjct: 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALC 36
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 29.4 bits (67), Expect = 2.2
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L GK ++ G+ G G+A A +GA V IA
Sbjct: 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIA 38
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 29.5 bits (67), Expect = 2.3
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIA 410
L ++F+V G + G G A+ +GA V+
Sbjct: 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGL 37
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 29.7 bits (68), Expect = 2.3
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 373 GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412
GGV + VVIGAG AG A A GA V + +
Sbjct: 161 GGVPGVEPADV-VVIGAGTAGYNAARIANGMGATVTVLDI 199
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 29.8 bits (68), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
L G V G G KAL +GA++V+
Sbjct: 171 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVT 202
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 30.0 bits (67), Expect = 2.4
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 385 VVIGAGGAGKALAYGAKAKGARV 407
+++G G A+ A +
Sbjct: 26 LMVGGGMGNCGAAFEAVRWADKY 48
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 29.5 bits (67), Expect = 2.4
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
GK+ +V GA G G A+ +A GARV +A+R
Sbjct: 26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRA 61
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 29.8 bits (67), Expect = 2.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVI 409
G++ VV GAG G G+ A +GA+VV+
Sbjct: 17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVV 48
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 29.5 bits (67), Expect = 2.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
+ GK+ +V GA G G+A A KGA+V + +
Sbjct: 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDW 39
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 29.4 bits (67), Expect = 2.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L+GK ++ G G G A A A GARVV+A
Sbjct: 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLA 35
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 29.4 bits (66), Expect = 2.6
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 16/87 (18%)
Query: 37 KMVVDMGKANASGADLVEIRLDGLKNFNPR------ENIKTLIKESPVPTLFTYRPIWEG 90
+ + M +A+A L + P E ++ + KE VP +
Sbjct: 141 QDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESG---- 196
Query: 91 GQYDGDENERVDVLRLAMELGADYIDV 117
++ +L G D
Sbjct: 197 ------NGISMETAKLLYSYGIKNFDT 217
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A
{Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A
1qnl_A
Length = 385
Score = 29.6 bits (67), Expect = 2.6
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 110 LGADYI--DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGA 167
+G+DYI V R G ++ PS +DL V RI + A
Sbjct: 146 IGSDYIYPRESNHVMRHLYRQHGGT-------VLEEIYIPLYPSDDDLQRAVERIYQARA 198
Query: 168 DIV 170
D+V
Sbjct: 199 DVV 201
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 29.4 bits (67), Expect = 2.7
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
AGK+ VV G G G G + GARVVI
Sbjct: 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVIC 39
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 29.1 bits (66), Expect = 2.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L+G+ +V G G G A+A GA V IA
Sbjct: 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIA 42
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 29.0 bits (66), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
+ GKL VV G G A A GAR+++ +R
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRN 40
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 29.4 bits (67), Expect = 2.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
++IGAG AG A G V +
Sbjct: 8 IIIGAGAAGLFCAAQLAKLGKSVTV 32
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 29.1 bits (66), Expect = 2.7
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L K+ +V GA G G+A+A +G++V+
Sbjct: 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDL 38
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 29.3 bits (67), Expect = 2.7
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 373 GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412
GGV + V++G G G A A GA+V I +
Sbjct: 159 GGVPGVAPASV-VILGGGTVGTNAAKIALGMGAQVTILDV 197
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 29.5 bits (67), Expect = 2.8
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
G +V GAG G AKA GA V+
Sbjct: 170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVV 201
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 29.3 bits (67), Expect = 2.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 373 GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412
GGV GK+ V++G G G A A GA+V I +
Sbjct: 160 GGVPGVKPGKV-VILGGGVVGTEAAKMAVGLGAQVQIFDI 198
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 29.4 bits (67), Expect = 2.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
V+IGAG AG A A +G RV++
Sbjct: 31 VIIGAGAAGMMCAIEAGKRGRRVLV 55
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 29.3 bits (65), Expect = 2.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
VIGAG +G A AY K G V +
Sbjct: 17 AVIGAGVSGLAAAYKLKIHGLNVTV 41
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 29.0 bits (66), Expect = 2.9
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
GK +VIG G G A GA V++ R
Sbjct: 6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGR 40
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 29.6 bits (65), Expect = 3.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVI---ANRTYGESLTF 420
++IG+G +G A A ++ G V + +R G TF
Sbjct: 281 VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF 320
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 29.1 bits (66), Expect = 3.0
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESL 418
+ +++G G L G V + + + ++L
Sbjct: 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQAL 180
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 29.4 bits (67), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+VIG G +G A GA +GA V++
Sbjct: 30 IVIGGGPSGLMAAIGAAEEGANVLL 54
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 29.1 bits (66), Expect = 3.1
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRT 413
L GK+ +V GA G G A+A AKA GA +V +
Sbjct: 32 LKGKIALVTGASYGIGFAIASAYAKA-GATIVFNDIN 67
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 29.2 bits (65), Expect = 3.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
V+G G +G A+A+ +++G V+
Sbjct: 20 AVVGGGISGLAVAHHLRSRGTDAVL 44
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 29.1 bits (66), Expect = 3.2
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
L G++ ++ G G G+AL A+GARV + ++
Sbjct: 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDK 37
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 29.2 bits (66), Expect = 3.2
Identities = 12/65 (18%), Positives = 24/65 (36%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVI 438
++GAG G +A +A G + +R+ + L L + +
Sbjct: 137 REEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRV 196
Query: 439 VIRIL 443
+I +L
Sbjct: 197 LINLL 201
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 29.1 bits (66), Expect = 3.3
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
K+ +V G G G A+ GA+VV
Sbjct: 12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSV 44
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 29.1 bits (66), Expect = 3.3
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
S+L+G++ VV GA G G A+A + GARVV+ R
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTAR 61
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 29.1 bits (66), Expect = 3.3
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
VIG G G GA GA + A
Sbjct: 171 CVIGIGPVGLMSVAGANHLGAGRIFA 196
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 29.1 bits (66), Expect = 3.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L ++ +V G G G G+A A GA VV+A
Sbjct: 25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVA 57
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 29.0 bits (66), Expect = 3.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L + +V GA G G+A+A GA VV+ +
Sbjct: 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLK 45
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.2 bits (64), Expect = 3.6
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
+ G++ K +++GAG AG G V I
Sbjct: 34 IDNGLNPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTI 72
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 28.6 bits (65), Expect = 3.7
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYGE 416
+ L KL V+ G G G+A+A +GA + IA+
Sbjct: 2 TQRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP 43
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 29.0 bits (66), Expect = 3.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIA 410
+ IG G G A+A A A G RV +
Sbjct: 7 LIAIGGGSGGLAVAEKAAAFGKRVALI 33
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 28.7 bits (65), Expect = 3.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
+GK ++ GAG G A +A GA ++
Sbjct: 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILV 194
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 28.6 bits (65), Expect = 4.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L GK+ +V G G G + A+GA+VV
Sbjct: 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFG 37
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 29.1 bits (64), Expect = 4.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRT 413
+++G+G + G +V +A RT
Sbjct: 7 LMLGSGFVTRPTLDVLTDSGIKVTVACRT 35
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.0 bits (65), Expect = 4.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+IGAG AG +A K G VI
Sbjct: 8 AIIGAGAAGIGMAITLKDFGITDVI 32
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 28.9 bits (64), Expect = 4.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANR 412
V+G G G A A KG V+ +
Sbjct: 9 VLGLGNGGHAFAAYLALKGQSVLAWDI 35
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 28.7 bits (65), Expect = 4.1
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
S AG ++G G G A+ GA VI
Sbjct: 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVIL 212
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 28.7 bits (63), Expect = 4.1
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 386 VIGAGGA-GKALAYGAKAKGARVVIANR 412
++G G GK LA G +V+ +R
Sbjct: 5 LLGGTGNLGKGLALRLATLGHEIVVGSR 32
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 28.6 bits (65), Expect = 4.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L GK+ ++ G G G A+A +GA+V+I
Sbjct: 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMIT 36
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics,
center for structural of infectious diseases, csgid;
HET: FAD; 2.20A {Vibrio cholerae}
Length = 357
Score = 28.7 bits (65), Expect = 4.3
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 158 LVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRI 210
+V AS D++ A V + I + +V IG E L +
Sbjct: 304 IVNTGDASAQDVLMLAADI--QQRVFNCYGIELEHEVRFIG-ESEETNLKQWM 353
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 28.6 bits (65), Expect = 4.3
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L K +V G G G A+ GA + R
Sbjct: 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN 47
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 28.8 bits (64), Expect = 4.4
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
++ + VV G G G + + G VV+ R
Sbjct: 7 NTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCR 44
>2wmi_A Fucolectin-related protein; glycoside hydrolase, hydrolase, fucose
utilization, blood group antigen; HET: A2G GAL FUC;
1.90A {Streptococcus pneumoniae} PDB: 2wmj_A* 2wmk_A*
2wmi_B*
Length = 606
Score = 29.1 bits (64), Expect = 4.4
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 211 LCAKFGGFLTFGTLENG-----IVSAPGQPTIKDLLDLY 244
+ AK GG+ + NG G+ + +D Y
Sbjct: 180 VSAKNGGYFIWAEQNNGSAIEKAFGKNGKIAFQKSVDKY 218
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 28.8 bits (65), Expect = 4.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
A+ K V+GAG AG A A A A+G +V +
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTL 401
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 28.3 bits (64), Expect = 4.6
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 376 SSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR 412
KL V+ GA G G+A+A +G +++ R
Sbjct: 11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLAR 48
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur
protein, non-mevalonate pathway, terpene biosynt
isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Length = 366
Score = 28.7 bits (65), Expect = 4.7
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 159 VARIQASGADIVKFATTALDITDVARVFQITVHSQVPII 197
+ R+ +G +IV+ A DV + +I S +P+I
Sbjct: 52 IKRLYEAGCEIVRVAV--PHKEDVEALEEIVKKSPMPVI 88
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 28.3 bits (64), Expect = 4.7
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
K +V G G G A A GA V + R+
Sbjct: 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRS 47
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 28.3 bits (64), Expect = 4.8
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 367 GRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
G N+ K+ V+ GA G G L + + RVV +R+
Sbjct: 14 GTENLYFQSMMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRS 61
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 28.3 bits (64), Expect = 4.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 379 LAGKLFVVIGAGGA--GKALAYGAKAKGARVVIA 410
L GK+ +V A G G A A +GA VVI+
Sbjct: 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVIS 53
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 28.3 bits (64), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT 413
+ K +V+ A G G+A+A +GA V I R
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARN 52
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 28.3 bits (64), Expect = 5.0
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 18/68 (26%)
Query: 353 DYVGAISAIEDGLRGRLN----------VSGGVSSALAGKLFVVIGAGGAGKALAYGAKA 402
D I + L+ + +SGG S LAG+L A A+ +
Sbjct: 17 DPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRL--------AQLAVESIREE 68
Query: 403 KGARVVIA 410
G IA
Sbjct: 69 GGDAQFIA 76
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 28.3 bits (64), Expect = 5.1
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 372 SGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVI 409
SG V + + +V G G G A+A G +V I
Sbjct: 12 SGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAI 50
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 28.2 bits (64), Expect = 5.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L GK+ V+ G+ G GK++A + A+VV+
Sbjct: 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVN 37
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 28.3 bits (64), Expect = 5.8
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVI 409
+ VV GAG G+A A +GA VV+
Sbjct: 6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVL 37
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 28.3 bits (64), Expect = 5.9
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
+ L L +V GAG G G+A++ +GA V +
Sbjct: 2 QNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLD 40
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 28.3 bits (64), Expect = 5.9
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
L G+ VV G G G+ +A GA V +A R+
Sbjct: 8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRS 43
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 28.4 bits (64), Expect = 6.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 385 VVIGAGGAGKALAYG-AKAKGARVVI 409
+++G GG G A AY AK G V
Sbjct: 25 IIVGGGGHGLATAYFLAKNHGITNVA 50
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 28.4 bits (64), Expect = 6.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+VIGAG G + A K G +
Sbjct: 27 IVIGAGIGGLSAAVALKQSGIDCDV 51
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 27.9 bits (63), Expect = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L+GK +V GA G G+A +GA +V
Sbjct: 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAV 36
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 27.8 bits (63), Expect = 6.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
+ LAGK +V GA G GKA+A A GA V+++
Sbjct: 1 TERLAGKTALVTGAAQGIGKAIAARLAADGATVIVS 36
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 27.8 bits (63), Expect = 6.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT 413
L GK+ +V GA G GKA+A +GA+V+ +
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS 42
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6
motif two domain P transport protein; HET: NAG B12;
2.60A {Homo sapiens} PDB: 3kq4_A*
Length = 399
Score = 28.2 bits (62), Expect = 6.7
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGG----VSSALA 380
VDT A + A+ C+ + G GY + + + I + + ++ +G S+ LA
Sbjct: 152 VDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGDIYSTGLA 211
Query: 381 GKLFVVIGAGGAGK 394
+ V +
Sbjct: 212 MQALSVTPEPSKKE 225
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 28.3 bits (62), Expect = 6.7
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
V+IGAG G A G +
Sbjct: 13 VIIGAGPTGLGAAVRLTELGYKNWH 37
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 27.9 bits (63), Expect = 6.8
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412
K+ V+ GA G G+A+A G + + R
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGAR 34
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.50A {Thermotoga maritima}
SCOP: c.129.1.1
Length = 195
Score = 27.7 bits (62), Expect = 6.9
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 375 VSSALAGKLFVVIGAGGAG--KALAYGAKAKGARVV 408
+ LA K ++V G G + ++ G + G VV
Sbjct: 50 LGRTLAKKGYLVFNGGRDGVMELVSQGVREAGGTVV 85
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 28.3 bits (62), Expect = 7.0
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 385 VVIGAGGAGKALAYG-AKAKGARVVI 409
+VIGAG G A + G +I
Sbjct: 14 LVIGAGPTGLGAAKRLNQIDGPSWMI 39
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 27.9 bits (63), Expect = 7.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVI 409
L G+ +V GA GG G+A+A A+GA V +
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGL 56
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 27.9 bits (63), Expect = 7.0
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 374 GVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVI 409
G S A ++ V G GG G A++ G V +
Sbjct: 18 GPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAV 54
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 28.1 bits (63), Expect = 7.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
VVIG G +G + Y + G VI
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVI 31
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 7.2
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 380 AGKLFVVIGAGGA--GKALAYGAKAKGARVVIANRTYGESLT 419
K ++ GAG G + G GA+VV+ + + +T
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVT 516
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 27.8 bits (63), Expect = 7.3
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 379 LAGKLFVVI---GAGGAGKALAYGAKAKGARVVIA 410
L GK V + GA G G + +GA+V +
Sbjct: 4 LQGK--VALVTGGASGVGLEVVKLLLGEGAKVAFS 36
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 27.9 bits (63), Expect = 7.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVI 409
S + +V G G G A+ A +G RV +
Sbjct: 21 QSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGV 55
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 28.0 bits (63), Expect = 7.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL 421
++IG+G AG +LA + +V++ E TF
Sbjct: 11 VLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFY 48
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 28.2 bits (63), Expect = 7.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+V+G G +G A G +V++
Sbjct: 5 IVVGGGFSGLKAARDLTNAGKKVLL 29
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 28.0 bits (63), Expect = 7.8
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 372 SGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
G + ++ +V GA G G +A +G RV + R
Sbjct: 13 RGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG 55
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 27.9 bits (63), Expect = 7.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVI 409
L GK ++ GA G G A+A G++V+I
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVII 43
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 27.9 bits (63), Expect = 7.8
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 379 LAGKLFVVI---GAGGAGKALAYGAKAKGARVVIA 410
L K V I GAGG G+ A GA+VVIA
Sbjct: 14 LQDK--VAIITGGAGGIGETTAKLFVRYGAKVVIA 46
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 28.0 bits (63), Expect = 7.9
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
+ G ++ GAG G AKA GA ++
Sbjct: 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVI 209
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 27.9 bits (63), Expect = 7.9
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR 412
+ K+ ++ GA GG G+ +A GA++++ R
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGAR 36
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 27.6 bits (62), Expect = 7.9
Identities = 27/118 (22%), Positives = 38/118 (32%), Gaps = 38/118 (32%)
Query: 98 NERVDVLRLAMELGADYI-----DVELQVAREFNDSIRGKKPEKCKVI-VSSHNYQYTPS 151
N+R D +A GAD + D+ + VAR+ I +I S+H+
Sbjct: 102 NDRAD---IARAAGADVLHLGQRDLPVNVARQ----ILAPD----TLIGRSTHDPD---- 146
Query: 152 VEDLSNLVARIQASGADIVK----FATT-----ALDITDVARVFQITVHSQVPI--IG 198
VA A AD + T A + RV P IG
Sbjct: 147 ------QVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIG 198
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 26.7 bits (59), Expect = 8.0
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 385 VVIGAGGAGKALAYG-AKAKGARVVIANRT 413
V+GAG G+ +A + V +A+
Sbjct: 9 CVVGAGKIGQMIAALLKTSSNYSVTVADHD 38
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 27.9 bits (63), Expect = 8.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410
K ++IGAG G A A GA+ V A
Sbjct: 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTA 190
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 28.2 bits (62), Expect = 8.1
Identities = 6/37 (16%), Positives = 20/37 (54%)
Query: 142 SSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALD 178
S H++ + S+ + L+A ++ + + +A +++
Sbjct: 4 SHHHHHHGSSLTTAAPLLALLRENQDSVKTYALESIN 40
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 27.6 bits (62), Expect = 8.1
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
S + V G G G A+A A+G V R
Sbjct: 19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARD 57
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 27.5 bits (62), Expect = 8.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L GK ++ G+ G G A A GA+V +
Sbjct: 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLH 37
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 28.0 bits (63), Expect = 8.2
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT 413
L+ + +V G G G+ +A GA V +A R+
Sbjct: 39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARS 74
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 27.5 bits (62), Expect = 8.4
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRT 413
+IG G A+ G K ++I+ +
Sbjct: 8 IIGVGKMASAIIKGLKQTPHELIISGSS 35
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 27.8 bits (63), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIA 410
++VIG G G A A A GAR +
Sbjct: 23 YLVIGGGSGGLASARRAAELGARAAVV 49
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 27.9 bits (61), Expect = 8.4
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
V++G+G G A G +V +
Sbjct: 50 VIVGSGPIGCTYARELVGAGYKVAM 74
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 28.0 bits (62), Expect = 8.5
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 382 KLFVVIGAGGAGK-----ALAYGAKAKGARVVI 409
+ V G GG GK +LA V++
Sbjct: 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLL 49
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus
stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A*
3mmd_A* 1r86_A
Length = 379
Score = 28.0 bits (62), Expect = 8.6
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 110 LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADI 169
G DYI V Q AR++ + K+ ++ +N + P L NLV +++ G I
Sbjct: 176 AGIDYIKVAFQAARKYGG-------DNIKLYMNDYNTEVEPKRTALYNLVKQLKEEGVPI 228
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 28.0 bits (62), Expect = 8.7
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 382 KLFVVIGAGGAGK-----ALAYGAKAKGARVVI 409
G GG GK A A +G RV++
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLL 41
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 27.5 bits (62), Expect = 8.8
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYGE 416
+GK V GAG G G A A GA+V ++ + +
Sbjct: 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ 43
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 27.5 bits (62), Expect = 9.0
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 372 SGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVI 409
+ G + +V G G G A+A A G +V +
Sbjct: 6 TEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAV 44
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 27.5 bits (62), Expect = 9.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA 410
L GK +V G+ G G +A GA +V+
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLN 34
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 27.6 bits (62), Expect = 9.2
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 14/65 (21%)
Query: 21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDG-----LKNFNPRENIKTLIKE 75
+ L + I E G +SG DL E+ + + F + I+
Sbjct: 74 DSNDLKVIIISAE---------GPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRN 124
Query: 76 SPVPT 80
PVP
Sbjct: 125 HPVPV 129
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 27.8 bits (61), Expect = 9.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412
A +V+GAG G A GARVV+ +
Sbjct: 89 ACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEK 123
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 27.6 bits (62), Expect = 9.4
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVI 409
++VIGAG AG + Y + RVV+
Sbjct: 12 YLVIGAGIAGASTGY-WLSAHGRVVV 36
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 27.6 bits (61), Expect = 9.9
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 382 KLFVVIGAGGAGK-----ALAYGAKAKGARVVIANRT 413
+ +G G + A A ++G RV++A
Sbjct: 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLA 39
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 27.4 bits (61), Expect = 9.9
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 382 KLFVVIGAGGAGK-----ALAYGAKAKGARVVI 409
K V G GG GK +LA + V++
Sbjct: 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLL 52
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 27.8 bits (63), Expect = 9.9
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIA 410
++ IG G G A A G + +
Sbjct: 7 YIAIGGGSGGIASINRAAMYGQKCALI 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.410
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,784,897
Number of extensions: 507006
Number of successful extensions: 2450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2328
Number of HSP's successfully gapped: 364
Length of query: 493
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 396
Effective length of database: 3,993,456
Effective search space: 1581408576
Effective search space used: 1581408576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)